Citrus Sinensis ID: 040410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF
Secondary Structure (PSIPRED)
cccccccccccEEEccccccEEccccccccccccHHHccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccccccccHHHcccHHHHEEHHcccccccccHHHcccccccEEEccccccccccccHHccEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MSDQAKKKQHTYVRLQAkhytgelpflsgnlRSLKedlsknnssgelptsignlfplkeLDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF
Flexible Loop (DISEMBL)
msdqakkkqhTYVRLqakhytgelpfLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILhlsqnsfrgriKLDFELSKEF
Low Complexity Region (SEG)
MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCnffnrilfllrnliqliilHLSQNSFRGRIKLDFELSKEF
Disordered region (IsUnstruct)
***********YVRLQAKHYTGELPFL**********************SIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDF******
Disordered Region (DISOPRED)
MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF
Disordered Region (DISEMBL)
***********YVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF
Disordered Region (DISPRO)
****AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELS***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.918	0.185	0.323	1e-11
P93194	1109	Receptor-like protein kin	N/A	no	0.929	0.143	0.307	2e-11
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.842	0.126	0.331	2e-10
O82318	960	Probably inactive leucine	no	no	0.877	0.156	0.324	3e-10
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.877	0.125	0.324	1e-09
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.836	0.129	0.314	2e-09
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.894	0.142	0.298	3e-09
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.859	0.121	0.324	8e-09
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.859	0.121	0.324	8e-09
Q9LP24	1120	Probable leucine-rich rep	no	no	0.847	0.129	0.359	8e-09

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 7/164 (4%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNS-SGELPTSIGNLFPLKELDFLFNKLSS 69
           T V L    + GE+P   GNL  L+  +  NN  +GE+P+S+GNL  L  L+   N+L  
Sbjct: 137 TLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVG 196

Query: 70  EFSCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
           +   S      L+ L L S N   ++P S+ N + L    L  N+  GE+ AS  NL  L
Sbjct: 197 KIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIEL 256

Query: 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFEL 167
            V++    +    I     NL +L I  LS N+F      D  +
Sbjct: 257 RVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSI 300

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 13  VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF 71
           V L    + G +P   GN   L+  DLS N+ +G +P ++G L  L+ L   FN L   F
Sbjct: 97  VVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPF 156

Query: 72  SCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEV 125
             S      L+ ++         +P +I N + L    L  N+FSG + +S  N+ +L+ 
Sbjct: 157 PESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQE 216

Query: 126 LAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171
           L +N  N    +   L NL  L+ L +  NS  G I LDF   K+ 
Sbjct: 217 LYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQI 262

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC------S 74
           G++P   G +++LK   L +N+ SG +P+S+ NL  L+ L+   N L+  F        S
Sbjct: 394 GQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTS 453

Query: 75  LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF 134
           L  L L    F   VP SI+N + L + +L  N FSGE+ AS  NL  L  L ++K N  
Sbjct: 454 LSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMS 513

Query: 135 NRILFLLRNLIQLIILHLSQNSFRGRIKLDF 165
             +   L  L  + ++ L  N+F G +   F
Sbjct: 514 GEVPVELSGLPNVQVIALQGNNFSGVVPEGF 544

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 12  YVRLQAKHYTGELPFLSGNLRSLKED-LSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
           ++ L +   TG +P   G +++LK   L  NN SGE+P  IG L  L  LD ++N LS  
Sbjct: 197 FLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGP 256

Query: 71  FSCSLKRL------FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
              SL  L      FL       ++P SI +   L   D   N  SGE+      ++SLE
Sbjct: 257 IPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLE 316

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
           +L +   N   +I   + +L +L +L L  N F G I
Sbjct: 317 ILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGI 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 70/157 (44%), Gaps = 7/157 (4%)

Query: 13  VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF 71
           + L   H +GE+P     L +L   DLS N  +G +P  +GN   L+ L+   N+L+   
Sbjct: 609 ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHI 668

Query: 72  S------CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEV 125
                   SL +L L        VP S+ N   L   DL FN  SGEL +    ++ L  
Sbjct: 669 PESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVG 728

Query: 126 LAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162
           L I +  F   I   L NL QL  L +S+N   G I 
Sbjct: 729 LYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIP 765

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 19/162 (11%)

Query: 2   SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKEL 60
           S+  K+   T + L    + G +P   GN  +L+   L+ N  +GELP  IG L  L  L
Sbjct: 475 SNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTL 534

Query: 61  DFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNL 120
           +   NKL+ E                  VP  I N   LQ  D+  N FSG L +   +L
Sbjct: 535 NISSNKLTGE------------------VPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSL 576

Query: 121 KSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162
             LE+L ++  N    I   L NL +L  L +  N F G I 
Sbjct: 577 YQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
            ++ L   H++G LP+   N+  L+  D+  N  +G++P  +GNL  L++LD   N  + 
Sbjct: 479 VFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDIPAQLGNLVNLEQLDLSRNSFTG 538

Query: 70  EFSCSLKRL------FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
               S   L       L +     ++P SI N  +L   DL +N  SGE+      + SL
Sbjct: 539 NIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTLLDLSYNSLSGEIPQELGQVTSL 598

Query: 124 EV-LAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKL 163
            + L ++   F   I     +L QL  L LS NS  G IK+
Sbjct: 599 TINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDIKV 639

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 15  LQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC 73
           LQ   + G +P    N   L   DLS N  +G +P+S+G+L  LK+L    N+LS E   
Sbjct: 434 LQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQ 493

Query: 74  ------SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
                 +L+ L L   +    +P S++N  +L W  L  N+ SGE+ AS   L +L +L 
Sbjct: 494 ELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILK 553

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
           +   +    I   L N   LI L L+ N   G I
Sbjct: 554 LGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSI 587

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 15  LQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC 73
           LQ   + G +P    N   L   DLS N  +G +P+S+G+L  LK+L    N+LS E   
Sbjct: 434 LQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQ 493

Query: 74  ------SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
                 +L+ L L   +    +P S++N  +L W  L  N+ SGE+ AS   L +L +L 
Sbjct: 494 ELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILK 553

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
           +   +    I   L N   LI L L+ N   G I
Sbjct: 554 LGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSI 587

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS------EFSC 73
           TG +P    N+  L E DLS NN  GELP +IGNL  L  L    N+LS        F  
Sbjct: 571 TGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133
           +L+ L L S NF  ++P + ++F +L   +L  NKF G +   +K L  L  L ++    
Sbjct: 631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSK-LTQLTQLDLSHNQL 689

Query: 134 FNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
              I   L +L  L  L LS N+  G I   FE
Sbjct: 690 DGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFE 722

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
18414102	891	receptor like protein 50 [Arabidopsis th	0.783	0.150	0.415	6e-13
2244748	869	disease resistance Cf-2 like protein [Ar	0.783	0.154	0.415	6e-13
15228515	711	receptor like protein 43 [Arabidopsis th	0.929	0.223	0.361	1e-12
359493539	1001	PREDICTED: receptor-like protein 12-like	0.807	0.137	0.388	3e-12
224111710	1176	predicted protein [Populus trichocarpa]	0.906	0.131	0.358	4e-12
125540245	478	hypothetical protein OsI_08020 [Oryza sa	0.883	0.315	0.341	5e-12
224111702	676	predicted protein [Populus trichocarpa]	0.871	0.220	0.364	6e-12
15228434	943	receptor like protein 35 [Arabidopsis th	0.783	0.142	0.380	6e-12
148909941	818	unknown [Picea sitchensis]	0.941	0.196	0.327	8e-12
224141725	836	predicted protein [Populus trichocarpa]	0.883	0.180	0.354	2e-11

>gi|18414102|ref|NP_567412.1| receptor like protein 50 [Arabidopsis thaliana] gi|16604663|gb|AAL24124.1| putative disease resistance Cf-2 [Arabidopsis thaliana] gi|20259297|gb|AAM14384.1| putative disease resistance Cf-2 protein [Arabidopsis thaliana] gi|332657943|gb|AEE83343.1| receptor like protein 50 [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 24  LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFSCS------L 75
           LP  SGN + L+  +L   N  GE+PTS+ +L  L +LD  +N  L+ E   S      L
Sbjct: 121 LPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHL 180

Query: 76  KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135
           + L L SC F  K+P S+ N   L   DL +N F+GEL  S  NLKSL VL +++CNFF 
Sbjct: 181 RVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFG 240

Query: 136 RILFLLRNLIQLIILHLSQNSF 157
           +I   L +L  L  L +S+N F
Sbjct: 241 KIPTSLGSLSNLTDLDISKNEF 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2244748|emb|CAB10171.1| disease resistance Cf-2 like protein [Arabidopsis thaliana] gi|7268096|emb|CAB78434.1| disease resistance Cf-2 like protein [Arabidopsis thaliana]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 24  LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFSCS------L 75
           LP  SGN + L+  +L   N  GE+PTS+ +L  L +LD  +N  L+ E   S      L
Sbjct: 121 LPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHL 180

Query: 76  KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135
           + L L SC F  K+P S+ N   L   DL +N F+GEL  S  NLKSL VL +++CNFF 
Sbjct: 181 RVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFG 240

Query: 136 RILFLLRNLIQLIILHLSQNSF 157
           +I   L +L  L  L +S+N F
Sbjct: 241 KIPTSLGSLSNLTDLDISKNEF 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228515|ref|NP_189531.1| receptor like protein 43 [Arabidopsis thaliana] gi|238479928|ref|NP_001154652.1| receptor like protein 43 [Arabidopsis thaliana] gi|9294230|dbj|BAB02132.1| disease resistance protein-like [Arabidopsis thaliana] gi|332643980|gb|AEE77501.1| receptor like protein 43 [Arabidopsis thaliana] gi|332643981|gb|AEE77502.1| receptor like protein 43 [Arabidopsis thaliana]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 1   MSDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLK-EDLSKNNSSGELPTSIGNLFPLKE 59
           MS        TY+ L   H++G++P   GNL  L   DL  N  SG++P+SIGNL  L  
Sbjct: 138 MSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSIGNLSHLTT 197

Query: 60  LDFLFNKLSSEFSCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGEL 113
           L+  FN+   +F  S      L  L L   NF  ++P SI N + L    L  N FSG++
Sbjct: 198 LELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQI 257

Query: 114 LASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159
            +   NL  L  L ++  NFF  I   L  L  L  ++LS N+F G
Sbjct: 258 PSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLSYNTFIG 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 75/152 (49%), Gaps = 14/152 (9%)

Query: 21  TGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC------- 73
           +G  P  S N   ++ DLS  N SGELP SIGNL  L+ LD        EFS        
Sbjct: 254 SGNFPRFSENNSLMELDLSFTNLSGELPASIGNLKSLQTLDLS----GCEFSGFIHTSIG 309

Query: 74  ---SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130
              SL+ L L  C F   +P SI N   LQ  DL   +FSG +  S  NLKSL+ L ++ 
Sbjct: 310 NLKSLQTLDLSGCEFSGFIPTSIGNLKSLQTLDLSDCEFSGSIPTSIGNLKSLQTLDLSN 369

Query: 131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162
           C F   I   + NL  L  L+L  N+F G++ 
Sbjct: 370 CEFLGSIPTSIGNLKSLRSLYLFSNNFSGQLP 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111710|ref|XP_002332892.1| predicted protein [Populus trichocarpa] gi|222833737|gb|EEE72214.1| predicted protein [Populus trichocarpa]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 9   QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKL 67
           Q T + L    + G LP    NL+ L    LS NN SG +P    N   L  L+  +N  
Sbjct: 414 QLTSLDLSYNSFQGHLPLSLRNLKKLDSLTLSSNNFSGPIPDVFVNQTQLTSLELSYNSF 473

Query: 68  SSEFSCSL------KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLK 121
                 SL        L L S NF  K+P+   N  +L   DL +N F G L  S +NLK
Sbjct: 474 QGHLPLSLINLKKLDSLTLSSNNFSGKIPYGFFNLTQLTSLDLSYNSFQGHLPLSLRNLK 533

Query: 122 SLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKL 163
            L+ L ++  NF  +I +   NL QL  L LS NSF+G + L
Sbjct: 534 KLDSLTLSSNNFSGKIPYGFFNLTQLTSLDLSYNSFQGHLPL 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125540245|gb|EAY86640.1| hypothetical protein OsI_08020 [Oryza sativa Indica Group]

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 12  YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
           Y+ L   + +G +P   GNL+ L + DLS NN  G++P S+GNL  L +LD  +N L  +
Sbjct: 297 YLLLDRNNLSGHIPSNMGNLQQLTQLDLSDNNLKGKMPPSLGNLQQLTQLDLSYNNLKGK 356

Query: 71  FSCSL---KRLF---LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
              SL   +RL    L + N    +P    +  +L W +L  N   GE+ +S  NL+ L 
Sbjct: 357 MPPSLGNLQRLVSFNLSNNNLQGDIPSKFGDLQQLVWLNLGNNYLHGEVPSSVANLQQLV 416

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162
           +L ++  N   ++   L NL +L  L LS N+F G+I 
Sbjct: 417 LLDLSHNNLSGKVPRSLGNLPKLRQLDLSHNNFGGKIP 454

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111702|ref|XP_002332890.1| predicted protein [Populus trichocarpa] gi|222833735|gb|EEE72212.1| predicted protein [Populus trichocarpa]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
           T++ L + ++ G++P   GNL+ L    LS NN SG++P      F L  LD   NK   
Sbjct: 143 THLNLNSSNFAGQIPSSLGNLKKLYSLTLSFNNFSGKIPNG---FFNLTWLDLSNNKFDG 199

Query: 70  EFSCSL---KRLFLVSC---NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
           +   SL   K+L+ ++    NF  K+P+   N  +L W DL  NKF G++ +S  NLK L
Sbjct: 200 QIPSSLGNLKKLYSLTLSFNNFSGKIPNGFFNLTQLTWLDLSNNKFDGQIPSSLGNLKKL 259

Query: 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162
             L ++  NF ++I     NL QL  L LS N F G+I 
Sbjct: 260 YSLTLSFNNFSSKIPDGFFNLTQLTWLDLSNNKFDGQIP 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228434|ref|NP_187719.1| receptor like protein 35 [Arabidopsis thaliana] gi|6016687|gb|AAF01514.1|AC009991_10 putative disease resistance protein [Arabidopsis thaliana] gi|12321885|gb|AAG50981.1|AC073395_23 disease resistance protein, putative; 7647-10478 [Arabidopsis thaliana] gi|332641479|gb|AEE75000.1| receptor like protein 35 [Arabidopsis thaliana]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 8/142 (5%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKL------SSEFSCSLKRLFLVSC 83
           NLR L  DL++N+  GE+P+SIGNL  L  L   +N+       S E    L  L L S 
Sbjct: 126 NLRVL--DLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSN 183

Query: 84  NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRN 143
            F  ++P SI N + L   +L  N+FSG++ +S  NL +L  L++   +FF +I   + N
Sbjct: 184 QFSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGN 243

Query: 144 LIQLIILHLSQNSFRGRIKLDF 165
           L +L  L+LS N+F G I   F
Sbjct: 244 LARLTYLYLSYNNFVGEIPSSF 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909941|gb|ABR18056.1| unknown [Picea sitchensis]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
           + + L   + TG +P   GNL  L    L +NN +G +P +IGNL  L  L    N  + 
Sbjct: 429 STLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTG 488

Query: 70  EFS------CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
                      L  L L   NF   +P  I+NF++LQ  DL  N F+G++     +L+ L
Sbjct: 489 GIPEAIGNLSQLTSLTLNQNNFTGGIPEVIDNFSQLQLLDLSKNGFTGQIPGYLASLQEL 548

Query: 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171
            VL++        I   + NL QL +L LS N   GRI  D E  + F
Sbjct: 549 RVLSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGF 596

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141725|ref|XP_002324215.1| predicted protein [Populus trichocarpa] gi|222865649|gb|EEF02780.1| predicted protein [Populus trichocarpa]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 15  LQAKHYTGELPFLSGNLRSLKED-LSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC 73
           L +    G++P   G +RSLK   L  NN SGE+PT IG L  L  LD ++N L  +   
Sbjct: 172 LASNQLVGQIPHELGQMRSLKLIYLGYNNLSGEIPTEIGQLISLNHLDLVYNNLIGQIPS 231

Query: 74  SL------KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
           SL      + LFL    F   +P SI    +L   DL  N  SGE+      LK+LE+L 
Sbjct: 232 SLGNLTDLQYLFLYQNKFTGPIPKSIFGLTKLISLDLSDNFLSGEIPELIIQLKNLEILH 291

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDF 165
           +   +F  +I   L +L +L +L L  N   G I  D 
Sbjct: 292 LFSNHFTGKIPVALSSLPRLQVLQLWSNKLSGEIPKDL 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.783	0.150	0.359	2.9e-13
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.918	0.166	0.323	1.5e-11
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.883	0.153	0.308	5.5e-11
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.918	0.185	0.292	1.5e-10
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.894	0.148	0.345	2.5e-10
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.690	0.123	0.352	7.9e-10
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.426	0.080	0.386	9.8e-10
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.959	0.183	0.300	1.5e-09
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.830	0.109	0.295	2.6e-09
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.690	0.098	0.328	3.6e-09

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 51/142 (35%), Positives = 70/142 (49%)

Query:    24 LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFSCS------L 75
             LP  SGN + L+  +L   N  GE+PTS+ +L  L +LD  +N  L+ E   S      L
Sbjct:   121 LPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHL 180

Query:    76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCXXXX 135
             + L L SC F  K+P S+ N   L   DL +N F+GEL  S  NLKSL VL +++C    
Sbjct:   181 RVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFG 240

Query:   136 XXXXXXXXXXXXXXXHLSQNSF 157
                             +S+N F
Sbjct:   241 KIPTSLGSLSNLTDLDISKNEF 262

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 53/164 (32%), Positives = 74/164 (45%)

Query:    11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
             T + L    + G +P    NL  L    LS N  SG++P+SIGNL  L  L+   N+ S 
Sbjct:   152 TSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQFSG 211

Query:    70 EFSCSLKRL----FLV--SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
             +   S+  L    FL   S +F+ ++P SI N ARL +  L +N F GE+ +S  NL  L
Sbjct:   212 QIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQL 271

Query:   124 EVLAINKCXXXXXXXXXXXXXXXXXXXHLSQNSFRGRIKLDFEL 167
              VL ++                      LS N F G I  +  L
Sbjct:   272 IVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISL 315

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 49/159 (30%), Positives = 75/159 (47%)

Query:    11 TYVRLQAKHYTGELPFLSGNLRSLKED-LSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
             T + L   ++ GE+PF  GNL  L    LS NN  GE+P+S GNL  L  L+   NKLS 
Sbjct:   259 TSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSG 318

Query:    70 EFSCSL---KRLFLVSC---NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
              F  +L   ++L  +S         +P ++++ + L+ +D   N F+G L +S  N+ SL
Sbjct:   319 SFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSL 378

Query:   124 EVLAI-NKCXXXXXXXXXXXXXXXXXXXHLSQNSFRGRI 161
             + + + N                      L  N+FRG I
Sbjct:   379 KTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPI 417

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 48/164 (29%), Positives = 70/164 (42%)

Query:    11 TYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNS-SGELPTSIGNLFPLKELDFLFNKLSS 69
             T V L    + GE+P   GNL  L+  +  NN  +GE+P+S+GNL  L  L+   N+L  
Sbjct:   137 TLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVG 196

Query:    70 EFSCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
             +   S      L+ L L S N   ++P S+ N + L    L  N+  GE+ AS  NL  L
Sbjct:   197 KIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIEL 256

Query:   124 EVLAINKCXXXXXXXXXXXXXXXXXXXHLSQNSFRGRIKLDFEL 167
              V++                        LS N+F      D  +
Sbjct:   257 RVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSI 300

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 57/165 (34%), Positives = 76/165 (46%)

Query:    13 VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE- 70
             VR+Q  H +G +P  SG+L  L+  +L+KNN +G++P  I     L  +D  FN LSS  
Sbjct:   418 VRIQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLS 477

Query:    71 ---FSCSLKRLFLVSCN-FWEKVPHSINNFARLQWYDLVFNKFSG---ELLASTKNLKSL 123
                FS    + F+ S N F  K+P+ I +   L   DL FN FSG   E +AS + L SL
Sbjct:   478 SSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSL 537

Query:   124 EVLAINKCXXXXXXXXXXXXXXXXXXXHLSQNSFRGRIKLDFELS 168
               L  N+                     LS NS  G I  D   S
Sbjct:   538 N-LKSNQLVGEIPKALAGMHMLAVLD--LSNNSLTGNIPADLGAS 579

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 44/125 (35%), Positives = 63/125 (50%)

Query:    11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
             TY+ L + H++G++    GNL  L   +L  N  SG+ P+SI NL  L  LD  +N+   
Sbjct:   148 TYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFG 207

Query:    70 EFSCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
             +F  S      L  L L S  F  ++P SI N + L   DL  N FSG++ +   NL  L
Sbjct:   208 QFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQL 267

Query:   124 EVLAI 128
               L +
Sbjct:   268 TFLGL 272

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:    12 YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
             ++ L +    G LP   G+LR+L+  DLS N+ +G +P+SIGN+  LK+LD   N ++  
Sbjct:   353 FLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGT 412

Query:    71 FSCSLKRLF-LVSCN 84
              + SL +L  LV  N
Sbjct:   413 IAESLGQLAELVDLN 427

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 52/173 (30%), Positives = 77/173 (44%)

Query:     2 SDQAKKKQHTYVRLQAKH--YTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLK 58
             S+ + +  H    L   H  + G++     NL  L   DLS N  SG++  SIGNL  L 
Sbjct:    50 SNSSIRNLHFLTTLDRSHNDFEGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLT 109

Query:    59 ELDFLFNKLSSEFSCSLKRL----FL-VSCN-FWEKVPHSINNFARLQWYDLVFNKFSGE 112
              LD  FN+ S +   S+  L    FL +S N F+ ++P SI N + L +  L  N+F G+
Sbjct:   110 SLDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQ 169

Query:   113 LLASTKNLKSLEVLAINKCXXXXXXXXXXXXXXXXXXXHLSQNSFRGRIKLDF 165
               +S   L +L  L ++                     +LS N+F G I   F
Sbjct:   170 FPSSIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSF 222

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 143 (55.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 44/149 (29%), Positives = 69/149 (46%)

Query:    20 YTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRL 78
             ++GELP   GNL++L+  DLS N  +G +P S+ NL  LKE+   +N LS + S ++ +L
Sbjct:   101 FSGELPEALGNLQNLQYLDLSNNELTGPIPISLYNLKMLKEMVLDYNSLSGQLSPAIAQL 160

Query:    79 -----FLVSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCX 132
                    +S N     +P  + +   L+  D+  N F+G + A+  NL  L     ++  
Sbjct:   161 QHLTKLSISMNSISGSLPPDLGSLKNLELLDIKMNTFNGSIPATFGNLSCLLHFDASQNN 220

Query:   133 XXXXXXXXXXXXXXXXXXHLSQNSFRGRI 161
                                LS NSF G I
Sbjct:   221 LTGSIFPGITSLTNLLTLDLSSNSFEGTI 249

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 41/125 (32%), Positives = 60/125 (48%)

Query:    13 VRLQAKHYTGELPFLSGNLRSL-KEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF 71
             + L      G +P   G L SL K +L+KN   G +P S+GNL  L  +D  FN LS E 
Sbjct:   657 LNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGEL 716

Query:    72 SCSLKR------LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEV 125
             S  L        L++    F  ++P  + N  +L++ D+  N  SGE+      L +LE 
Sbjct:   717 SSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEF 776

Query:   126 LAINK 130
             L + K
Sbjct:   777 LNLAK 781

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02980001 annotation not avaliable (832 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 12  YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
           ++ L +    G++P   G ++SLK   L  NN SGE+P  IG L  L  LD ++N L+  
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 71  FSCS------LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
              S      L+ LFL        +P SI +  +L   DL  N  SGE+      L++LE
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD 164
           +L +   NF  +I   L +L +L +L L  N F G I  +
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 9/157 (5%)

Query: 12  YVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
           Y+ L   ++TG +P   G++ +L+  DLS N  SGE+P  IG+   LK LD   N L  +
Sbjct: 122 YLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 71  FS------CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
                    SL+ L L S     ++P  +     L+W  L +N  SGE+      L SL 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
            L +   N    I   L NL  L  L L QN   G I
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 21  TGELPFLSGNLRSLKED-LSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C 73
           TG +P   GNL++L+   L +N  SG +P SI +L  L  LD   N LS E         
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133
           +L+ L L S NF  K+P ++ +  RLQ   L  NKFSGE+  +     +L VL ++  N 
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 134 FNRILFLLRNLIQLIILHLSQNSFRGRI 161
              I   L +   L  L L  NS  G I
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 15  LQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF--- 71
           L    + G LP   G+ R    DLS+N  SG +P  +G+L  L +L    NKLS E    
Sbjct: 459 LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 72  --SC-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123
             SC  L  L L       ++P S +    L   DL  N+ SGE+  +  N++SL
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 14/159 (8%)

Query: 13  VRLQAKHYTGELP--FLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
           VRLQ   ++GELP  F    L     D+S NN  G + +   ++  L+ L    NK    
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFL-DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 71  F-----SCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGEL---LASTKNLKS 122
                 S  L+ L L    F   VP  + + + L    L  NK SGE+   L+S K L S
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 123 LEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
           L+   ++      +I      +  L  L LSQN   G I
Sbjct: 528 LD---LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 15  LQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF-- 71
           L + ++TG++P    +L  L+   L  N  SGE+P ++G    L  LD   N L+ E   
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 72  ----SCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
               S +L +L L S +   ++P S+     L+   L  N FSGEL +    L  +  L 
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159
           I+  N   RI     ++  L +L L++N F G
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 37  DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS-------SEFSCSLKRLFLVSCNFWEKV 89
           DLS  N SG++ ++I  L  ++ ++   N+LS          S SL+ L L + NF   +
Sbjct: 75  DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134

Query: 90  PH-SINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI 148
           P  SI N   L   DL  N  SGE+     +  SL+VL +       +I   L NL  L 
Sbjct: 135 PRGSIPNLETL---DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 149 ILHLSQNSFRGRI 161
            L L+ N   G+I
Sbjct: 192 FLTLASNQLVGQI 204

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFL 80
           G +P     LR L+  +LS N+  G +P S+G++  L+ LD  +N  +            
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---------- 481

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS 116
                   +P S+     L+  +L  N  SG + A+
Sbjct: 482 --------IPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
PLN03150	623	hypothetical protein; Provisional	99.27
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.21
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.63
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.96
KOG4308	478	consensus LRR-containing protein [Function unknown	94.24
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.76
smart00370	26	LRR Leucine-rich repeats, outliers.	92.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.21
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.78
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.86

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=5.7e-23  Score=171.16  Aligned_cols=157  Identities=32%  Similarity=0.422  Sum_probs=67.7

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      +++|++|+|++|.+++..|..++.+++|++ ++++|.+.+.+|..+..+++|++|++++|.+.+..|     + +|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            344444444444444444444444444444 444444443444444444444444444444443333     2 344444


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+.+..|..++.+++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            44444444444444444444444444444443444444444444444444444433333333344444444444444333


Q ss_pred             ccCc
Q 040410          160 RIKL  163 (171)
Q Consensus       160 ~~p~  163 (171)
                      .+|.
T Consensus       299 ~~p~  302 (968)
T PLN00113        299 EIPE  302 (968)
T ss_pred             CCCh
Confidence            3333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=6.4e-23  Score=170.87  Aligned_cols=167  Identities=30%  Similarity=0.376  Sum_probs=107.9

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      ++++++|++|++++|.+.+..|..++.+++|++ ++++|.+.+.+|+.++.+++|++|++++|.+.+..|     + +|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            455666666666666666656666666666666 666666665566666666666666666666665555     4 666


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      +|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccccCcccccccC
Q 040410          157 FRGRIKLDFELSKE  170 (171)
Q Consensus       157 ~~~~~p~~~~~l~~  170 (171)
                      +.+.+|..+..+++
T Consensus       320 ~~~~~~~~~~~l~~  333 (968)
T PLN00113        320 FTGKIPVALTSLPR  333 (968)
T ss_pred             cCCcCChhHhcCCC
Confidence            66666655555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-22  Score=132.44  Aligned_cols=161  Identities=24%  Similarity=0.278  Sum_probs=130.3

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S   74 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~   74 (171)
                      +.+.++++++.|.|++|.++. +|+.++.+.+|+. ++.+|+++ ++|.++.++++|++|++..|++. ..|     . .
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            456677788888999999886 6778888999999 99989887 78888999999999998888776 344     4 7


Q ss_pred             cceEeccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           75 LKRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        75 L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      ++.|++.+|++. ..+|..|..+..|+.|++++|.+. -+|..++++++|+.|.+..|.+. .+|..++.++.|++|+++
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            888888888775 346778888888888888888887 67888888888888888888876 578888888888888888


Q ss_pred             cCccccccCcccccc
Q 040410          154 QNSFRGRIKLDFELS  168 (171)
Q Consensus       154 ~n~~~~~~p~~~~~l  168 (171)
                      +|++. .+|..++.+
T Consensus       182 gnrl~-vlppel~~l  195 (264)
T KOG0617|consen  182 GNRLT-VLPPELANL  195 (264)
T ss_pred             cceee-ecChhhhhh
Confidence            88886 567666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=2.8e-21  Score=127.60  Aligned_cols=153  Identities=22%  Similarity=0.311  Sum_probs=133.2

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc-cc-----c-
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE-FS-----C-   73 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-----~-   73 (171)
                      +.+..+.+|+.|++.+|.+++ +|.+++.+++|+. ++.-|.+. .+|..|+.+|.|+.||+.+|++... .|     + 
T Consensus        50 pnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence            467789999999999999987 7889999999999 99999987 7999999999999999999988653 45     6 


Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhcccc---CceE
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ---LIIL  150 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---L~~L  150 (171)
                      .++.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|+.++.++.|+.|.+++|++. .+|+.++.+.-   =+..
T Consensus       128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~  204 (264)
T KOG0617|consen  128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVM  204 (264)
T ss_pred             HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHH
Confidence            8999999999998 78999999999999999999988 89999999999999999999998 57777777632   2344


Q ss_pred             ecccCcccc
Q 040410          151 HLSQNSFRG  159 (171)
Q Consensus       151 ~l~~n~~~~  159 (171)
                      .+..|.+..
T Consensus       205 r~E~NPwv~  213 (264)
T KOG0617|consen  205 RMEENPWVN  213 (264)
T ss_pred             hhhhCCCCC
Confidence            566666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.66  E-value=3.5e-17  Score=125.47  Aligned_cols=165  Identities=21%  Similarity=0.083  Sum_probs=134.8

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      |..+.+++.|+|..|.++..-...+..|+.|+. ++++|.+...-++.+.-.++|++|++++|+++..-+     + .|+
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            445777888888888888766667888999999 999999886667777778899999999999985544     4 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEccccccccccc---ccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL---ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      +|+++.|+++......|..+.+|+.|+++.|.+++.+-   ..+..+++|+.|++.+|.+......+|..+..|++||+.
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence            99999999986555678888999999999999876544   345678999999999999985545789999999999999


Q ss_pred             cCccccccCcccccc
Q 040410          154 QNSFRGRIKLDFELS  168 (171)
Q Consensus       154 ~n~~~~~~p~~~~~l  168 (171)
                      +|.+...-|..|..+
T Consensus       425 ~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM  439 (873)
T ss_pred             CCcceeecccccccc
Confidence            999876556666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=4.7e-17  Score=124.77  Aligned_cols=155  Identities=18%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      |..+.+|.+|.|+.|+++...+..|.+|++|+. ++..|.+...-.-.|.++++|+.+.+.+|.+...-.     | +++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            445556666667777776655566677777777 777776642213335555555555555554431111     3 444


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccc------------------------cccCCCCCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA------------------------STKNLKSLEVLAINKCN  132 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~------------------------~~~~l~~L~~L~l~~n~  132 (171)
                      +|++..|+++.....++..+++|+.|++++|.|..--++                        ++..+..|+.|.+++|+
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            444444444433333344444444444444444433334                        44444444444444444


Q ss_pred             cchhhhHHhhccccCceEecccCccc
Q 040410          133 FFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       133 ~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++..--.+|..+++|++||+++|.++
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence            44322234555566666666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=1.8e-17  Score=128.35  Aligned_cols=162  Identities=22%  Similarity=0.223  Sum_probs=88.0

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCC------------------------cchhhh-hcCCCccCCcCCccCCCCCCC
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGN------------------------LRSLKE-DLSKNNSSGELPTSIGNLFPL   57 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~------------------------l~~L~~-~l~~~~~~~~~~~~~~~l~~L   57 (171)
                      ++.++..|+.|||++|.+.+ +|..+.+                        +..|-. |+++|.+. .+|+.+..+..|
T Consensus        98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML  175 (1255)
T ss_pred             hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence            45556666666666665554 3433333                        344444 44444443 445555555555


Q ss_pred             cEEEccCCcCC----Cccc-c-ccceEeccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410           58 KELDFLFNKLS----SEFS-C-SLKRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK  130 (171)
Q Consensus        58 ~~L~l~~~~~~----~~~~-~-~L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~  130 (171)
                      ++|++++|.+.    ..+| | +|++|++++.+-+ ..+|.++..+.+|..++++.|.+. .+|+-+.++.+|+.|.+++
T Consensus       176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence            55555555442    1223 4 5666666554433 345666666666777777776666 5666666677777777777


Q ss_pred             CccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410          131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK  169 (171)
Q Consensus       131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~  169 (171)
                      |.++ ++....+...++++|+++.|++. .+|+.++.++
T Consensus       255 N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  255 NKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             Ccee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            6665 33333344444455555555544 3444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=1.9e-16  Score=122.87  Aligned_cols=146  Identities=21%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c--ccceEe
Q 040410            7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C--SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~--~L~~L~   79 (171)
                      ++.|.+|.+++..-+ ..+|.++..+.+|+. |++.|.+. .+|+.+-.+++|+.|++++|.++....   .  .+++|+
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence            444555555554332 235666666666666 66666665 566666666666666666666553222   1  455555


Q ss_pred             cccccccccC-------------------------hhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410           80 LVSCNFWEKV-------------------------PHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        80 l~~~~~~~~~-------------------------~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  134 (171)
                      ++.|+++ .+                         |.+||.+.+|+.+..++|.+. -+|+++|++..|+.|.+++|++.
T Consensus       275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence            5555554 34                         444555555555555555444 45555665555666666665554


Q ss_pred             hhhhHHhhccccCceEecccCc
Q 040410          135 NRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus       135 ~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                       .+|+++--++.|+.||+..|.
T Consensus       353 -TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  353 -TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             -echhhhhhcCCcceeeccCCc
Confidence             355555555666666666554

>PLN03210 Resistant to P

Probab=99.54  E-value=3.3e-14  Score=120.60  Aligned_cols=148  Identities=26%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEe
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLF   79 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~   79 (171)
                      +..+++|++|++++|.....+|..+..+++|+. ++++|...+.+|..+ .+++|+.|++++|...+.+|  . +|++|+
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~  731 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD  731 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence            334444555555544433334445555555555 555543333444433 44555555555544333333  2 444555


Q ss_pred             cccccccccChhhh------------------------------hcCcCCcEEEcccccccccccccccCCCCCceEecc
Q 040410           80 LVSCNFWEKVPHSI------------------------------NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAIN  129 (171)
Q Consensus        80 l~~~~~~~~~~~~~------------------------------~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~  129 (171)
                      +.+|.+. .+|..+                              ...++|+.|++++|.....+|.+++++++|+.|+++
T Consensus       732 L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        732 LDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE  810 (1153)
T ss_pred             cCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence            5444433 222211                              011345555555555444556666666666666666


Q ss_pred             cCccchhhhHHhhccccCceEeccc
Q 040410          130 KCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus       130 ~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      +|...+.+|... .+++|++|++++
T Consensus       811 ~C~~L~~LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        811 NCINLETLPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             CCCCcCeeCCCC-CccccCEEECCC
Confidence            554333344322 333344444433

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=1.2e-16  Score=117.80  Aligned_cols=149  Identities=26%  Similarity=0.304  Sum_probs=103.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC--ccc-c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFS-C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-~-~L~~L   78 (171)
                      ++.+..+..+++.+|.+....|..+. ++.|++ |...|.++ .+|+.++.+.+|.-|++..|.+..  .+| | .+.++
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El  233 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL  233 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence            34444555566666666553333333 677777 76666665 677777777777777777777652  223 6 77788


Q ss_pred             ecccccccccChhhhh-cCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           79 FLVSCNFWEKVPHSIN-NFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +.+.|.+. .+|...+ .++++.+||+.+|.+. ++|+.++.+++|.+||+++|.++ .+|..++++ .|+.|-+.+|++
T Consensus       234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            88888776 4555554 6778888888888877 77888888888888888888887 467777777 677777777776


Q ss_pred             c
Q 040410          158 R  158 (171)
Q Consensus       158 ~  158 (171)
                      .
T Consensus       310 r  310 (565)
T KOG0472|consen  310 R  310 (565)
T ss_pred             H
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.52  E-value=1.3e-16  Score=117.62  Aligned_cols=157  Identities=24%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEe
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLF   79 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~   79 (171)
                      .+.+++.++.++|.+.+ .+++++.+..++. +..+|.++ .+|+.++.+.++..+++.+|.+....|    | .+++++
T Consensus       112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld  189 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD  189 (565)
T ss_pred             hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence            34445555555555544 4445555555555 55555544 444444444444444444444442222    3 444444


Q ss_pred             cccccccccChhh----------------------hhcCcCCcEEEccccccccccccccc-CCCCCceEecccCccchh
Q 040410           80 LVSCNFWEKVPHS----------------------INNFARLQWYDLVFNKFSGELLASTK-NLKSLEVLAINKCNFFNR  136 (171)
Q Consensus        80 l~~~~~~~~~~~~----------------------~~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~  136 (171)
                      ...|-+. .+|+.                      |+.+..|++++++.|.+. -+|...+ .+.++..||+..|.+. +
T Consensus       190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e  266 (565)
T KOG0472|consen  190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E  266 (565)
T ss_pred             cchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence            4444443 34444                      444444555555555544 4554444 6677777778777776 6


Q ss_pred             hhHHhhccccCceEecccCccccccCcccccc
Q 040410          137 ILFLLRNLIQLIILHLSQNSFRGRIKLDFELS  168 (171)
Q Consensus       137 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l  168 (171)
                      .|.++..+++|.+||+++|.+++ +|-.++++
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl  297 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL  297 (565)
T ss_pred             CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence            78888888888888888888874 67777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.48  E-value=9.6e-16  Score=117.15  Aligned_cols=156  Identities=26%  Similarity=0.324  Sum_probs=106.3

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c--ccceEec
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C--SLKRLFL   80 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~--~L~~L~l   80 (171)
                      +..-+..||+.|++.+ +|..++.+..|+. .++.|.+. .+|+.+..+..|.+++++.|+++ ..|   |  .|+.|.+
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence            4455677889999887 7888888889999 88888886 78888889999999999999887 444   4  7888888


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      ++|+++ .+|..++....|..++.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++ |.+||+++|++. .
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-Y  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-e
Confidence            888776 56777776666777777666665 45555555555555555555544 3444444332 455555555554 3


Q ss_pred             cCcccccccC
Q 040410          161 IKLDFELSKE  170 (171)
Q Consensus       161 ~p~~~~~l~~  170 (171)
                      +|-.|.+|+.
T Consensus       226 iPv~fr~m~~  235 (722)
T KOG0532|consen  226 LPVDFRKMRH  235 (722)
T ss_pred             cchhhhhhhh
Confidence            4555554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-14  Score=116.05  Aligned_cols=149  Identities=23%  Similarity=0.217  Sum_probs=121.5

Q ss_pred             ccCCCCcEEEeecccccCCCCCcc-------------------------CCcchhhh-hcCCCccCCcCCccCCCCCCCc
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLS-------------------------GNLRSLKE-DLSKNNSSGELPTSIGNLFPLK   58 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~-------------------------~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~   58 (171)
                      ..++.|++|+|..|.+...++..+                         ..+..|+. .+.+|.+++...+.+.++++|+
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            358889999999998765221111                         13466888 8899999877777899999999


Q ss_pred             EEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccC
Q 040410           59 ELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC  131 (171)
Q Consensus        59 ~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  131 (171)
                      .|++++|++. .+|      . .|++|++++|+++ .+|..+..+..|++|....|.+. .+| .+..++.|+.+|++.|
T Consensus       387 VLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  387 VLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             eeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence            9999999988 566      4 7899999999998 78999999999999999999998 788 7899999999999999


Q ss_pred             ccchhhhHHhhccccCceEecccCcc
Q 040410          132 NFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus       132 ~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      .++...-.+....++|++||+++|..
T Consensus       463 ~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  463 NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhhhhhhCCCcccceeeccCCcc
Confidence            98753333333338899999999984

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.48  E-value=8.6e-15  Score=108.24  Aligned_cols=155  Identities=25%  Similarity=0.220  Sum_probs=81.4

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcch---hhh-hcCCCccCC----cCCccCCCC-CCCcEEEccCCcCCCccc--
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRS---LKE-DLSKNNSSG----ELPTSIGNL-FPLKELDFLFNKLSSEFS--   72 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~-~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~--   72 (171)
                      +.++++|+.|++++|.+....+..+..+..   |++ ++++|.+.+    .+...+..+ ++|+.+++++|.+++...  
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            344566777777777665434444444433   666 666666541    122234445 666777777666653211  


Q ss_pred             -------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh
Q 040410           73 -------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR  136 (171)
Q Consensus        73 -------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~  136 (171)
                             + .+++|++++|.+.+.    ++..+...++|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence                   3 566666666666532    222333445666666666655422    233344556666666666665542


Q ss_pred             hhHHhhc-----cccCceEecccCccc
Q 040410          137 ILFLLRN-----LIQLIILHLSQNSFR  158 (171)
Q Consensus       137 ~~~~~~~-----~~~L~~L~l~~n~~~  158 (171)
                      ....+..     .+.|++|++++|.+.
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCC
Confidence            2222211     145666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.47  E-value=3.8e-13  Score=114.20  Aligned_cols=157  Identities=22%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccce
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKR   77 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~   77 (171)
                      +..+++|+.++|+++.....+| .++.+++|+. ++.+|.....+|..+..+++|+.|++++|...+.+|    + +|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            3456677777777665444344 4666777777 777776555677777778888888888776555555    4 7788


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccc------------------------------cCCCCCceEe
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST------------------------------KNLKSLEVLA  127 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~------------------------------~~l~~L~~L~  127 (171)
                      |++++|.....+|..   ..+|+.|++.+|.+. .+|..+                              ...++|+.|+
T Consensus       709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~  784 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF  784 (1153)
T ss_pred             EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence            888877655445532   356778888887765 455432                              1124677888


Q ss_pred             cccCccchhhhHHhhccccCceEecccCccccccCccc
Q 040410          128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDF  165 (171)
Q Consensus       128 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~  165 (171)
                      +++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus       785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            88887777889999999999999999876555666553

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.37  E-value=2.2e-13  Score=100.67  Aligned_cols=153  Identities=19%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             CCCcEEEeecccccCC----CCCccCCc-chhhh-hcCCCccCC----cCCccCCCCCCCcEEEccCCcCCCcc----c-
Q 040410            8 KQHTYVRLQAKHYTGE----LPFLSGNL-RSLKE-DLSKNNSSG----ELPTSIGNLFPLKELDFLFNKLSSEF----S-   72 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~----~~~~~~~l-~~L~~-~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~----~-   72 (171)
                      ++|++|++++|.+++.    +...+..+ ++|++ ++++|.+++    .+...+..+++|++|++++|.+.+..    + 
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            4599999999998742    23345566 88999 999999873    23344667789999999999987421    1 


Q ss_pred             ----c-ccceEeccccccccc----ChhhhhcCcCCcEEEcccccccccccccccC-----CCCCceEecccCccch---
Q 040410           73 ----C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTKN-----LKSLEVLAINKCNFFN---  135 (171)
Q Consensus        73 ----~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~---  135 (171)
                          . +|++|++++|.+.+.    +...+..+++|++|++++|.+.+.....++.     ...|++|++++|.++.   
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence                4 799999999988643    3345567789999999999887643443432     3799999999999862   


Q ss_pred             -hhhHHhhccccCceEecccCccccc
Q 040410          136 -RILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus       136 -~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                       .+...+..+++|+++++++|.+...
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHH
Confidence             3445566678899999999998743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.36  E-value=7.4e-14  Score=111.93  Aligned_cols=149  Identities=23%  Similarity=0.318  Sum_probs=94.1

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----------
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----------   72 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------   72 (171)
                      +.+.+|+.+...+|.++. +|..+....+|+. ....|.++ .+|+...++.+|++|++..|++.. +|           
T Consensus       261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASL  337 (1081)
T ss_pred             HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHH
Confidence            456666677777776644 5666677777777 77777776 788888888899999998887652 22           


Q ss_pred             --------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCceEeccc
Q 040410           73 --------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEVLAINK  130 (171)
Q Consensus        73 --------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~  130 (171)
                                          + .++.|++.+|.+++..-.-+.++.+|+.|++++|.+. .+|. .+.++..|++|++++
T Consensus       338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSG  416 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSG  416 (1081)
T ss_pred             HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhccc
Confidence                                2 4555666666666555555556666666666666655 4443 344556666666666


Q ss_pred             Cccch----------------------hhhHHhhccccCceEecccCccc
Q 040410          131 CNFFN----------------------RILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       131 n~~~~----------------------~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      |.+..                      .+| .+..++.|+.+|++.|.++
T Consensus       417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  417 NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            65442                      234 4455555666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=1.3e-12  Score=105.65  Aligned_cols=84  Identities=18%  Similarity=0.153  Sum_probs=55.3

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      +|+.|++++|.+. .+|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.++ .+|..+..+++++.++++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            4555555555554 23321   235666666666665 45543   235677778888877 678888889999999999


Q ss_pred             cCccccccCcccc
Q 040410          154 QNSFRGRIKLDFE  166 (171)
Q Consensus       154 ~n~~~~~~p~~~~  166 (171)
                      +|.+++..|..+.
T Consensus       454 ~N~Ls~~~~~~L~  466 (788)
T PRK15387        454 GNPLSERTLQALR  466 (788)
T ss_pred             CCCCCchHHHHHH
Confidence            9999877666553

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=2.5e-12  Score=103.03  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             CcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410           57 LKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK  130 (171)
Q Consensus        57 L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~  130 (171)
                      ++.|++++|.+.+.+|     + +|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5566666666666655     4 666677777766666666666666777777777766666666666666777777777


Q ss_pred             CccchhhhHHhhcc-ccCceEecccCcc
Q 040410          131 CNFFNRILFLLRNL-IQLIILHLSQNSF  157 (171)
Q Consensus       131 n~~~~~~~~~~~~~-~~L~~L~l~~n~~  157 (171)
                      |.+.+.+|..++.. .++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            76666666665543 3445666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.3e-13  Score=105.76  Aligned_cols=150  Identities=22%  Similarity=0.220  Sum_probs=114.1

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      ..|..+.|..|++-. +|..++.+..|.. +++.|.++ .+|..+..++ |+.+-+++|+++ .+|     . .+..|+.
T Consensus        98 ~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen   98 VSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhh
Confidence            345556666676654 6777888888888 88888877 7777776665 788888888776 333     3 7777888


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      +.|.+. .+|..++++.+|+.+++..|++. .+|+.++.+ .|..||+++|++. .+|-.|.+|+.|++|-+.+|.+. .
T Consensus       174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S  248 (722)
T KOG0532|consen  174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S  248 (722)
T ss_pred             hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence            888887 67778888888888888888887 678888744 4888888888887 57888888888888888888886 3


Q ss_pred             cCcccc
Q 040410          161 IKLDFE  166 (171)
Q Consensus       161 ~p~~~~  166 (171)
                      .|..++
T Consensus       249 PPAqIC  254 (722)
T KOG0532|consen  249 PPAQIC  254 (722)
T ss_pred             ChHHHH
Confidence            455443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=7e-12  Score=101.67  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=26.4

Q ss_pred             CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      +|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+  .++|++|++++|.+.
T Consensus       326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            4555555555554 3444332  35555555555554 234322  134555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=2.7e-13  Score=100.00  Aligned_cols=77  Identities=16%  Similarity=0.086  Sum_probs=59.3

Q ss_pred             hhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccc
Q 040410           92 SINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELS  168 (171)
Q Consensus        92 ~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l  168 (171)
                      .|..+++|+.+++++|.+++--+.+|.+...++.|.+..|.+...-...|.++..|++|++.+|+++-.-|..|..+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            56778889999999998886666788888888888888888765445667888888888888888875555555443

>PLN03150 hypothetical protein; Provisional

Probab=99.27  E-value=1.7e-11  Score=98.31  Aligned_cols=94  Identities=29%  Similarity=0.322  Sum_probs=84.4

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      .++.|++.+|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788999999998899999999999999999999988899889999999999999999998899999999999999999


Q ss_pred             cCccccccCccccc
Q 040410          154 QNSFRGRIKLDFEL  167 (171)
Q Consensus       154 ~n~~~~~~p~~~~~  167 (171)
                      +|.+.+.+|..+..
T Consensus       499 ~N~l~g~iP~~l~~  512 (623)
T PLN03150        499 GNSLSGRVPAALGG  512 (623)
T ss_pred             CCcccccCChHHhh
Confidence            99999888877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.27  E-value=4.1e-12  Score=102.98  Aligned_cols=83  Identities=20%  Similarity=0.234  Sum_probs=52.4

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      +|++|++++|.++. +|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQAS  396 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence            46666666666652 444432  57888888888776 5666553  57788888888776 4565443  246777777


Q ss_pred             cCccccccCcccc
Q 040410          154 QNSFRGRIKLDFE  166 (171)
Q Consensus       154 ~n~~~~~~p~~~~  166 (171)
                      +|.+. .+|..+.
T Consensus       397 ~N~L~-~LP~sl~  408 (754)
T PRK15370        397 RNNLV-RLPESLP  408 (754)
T ss_pred             cCCcc-cCchhHH
Confidence            77776 4555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=2.5e-11  Score=82.04  Aligned_cols=116  Identities=28%  Similarity=0.341  Sum_probs=38.3

Q ss_pred             hhhh-hcCCCccCCcCCccCC-CCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhh-hcCcCCcEEEcc
Q 040410           33 SLKE-DLSKNNSSGELPTSIG-NLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLV  105 (171)
Q Consensus        33 ~L~~-~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~  105 (171)
                      ++++ ++.+|.++ .+. .++ .+.+|+.|++++|.+...-.   + .|++|++++|.++. +...+ ..+++|++|+++
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence            3445 55555554 222 233 34555555555555542211   3 55555555555553 33333 356778888888


Q ss_pred             cccccc-cccccccCCCCCceEecccCccchh---hhHHhhccccCceEe
Q 040410          106 FNKFSG-ELLASTKNLKSLEVLAINKCNFFNR---ILFLLRNLIQLIILH  151 (171)
Q Consensus       106 ~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~  151 (171)
                      +|.+.. .-...++.+++|+.|++.+|.+...   -...+..+++|+.||
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            887753 1124556777788888888776532   123466777888776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.21  E-value=4e-11  Score=97.25  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             CcEEEccCCcCCCccc--c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCcc
Q 040410           57 LKELDFLFNKLSSEFS--C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF  133 (171)
Q Consensus        57 L~~L~l~~~~~~~~~~--~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  133 (171)
                      |+.|++++|++.. +|  . +++.|++++|.+. .+|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|.+
T Consensus       344 Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~L  414 (788)
T PRK15387        344 LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRL  414 (788)
T ss_pred             cceEecCCCccCC-CCCCCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcC
Confidence            4444444444442 22  2 4444444444444 23321   135666777776666 44542   24677777777777


Q ss_pred             chhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          134 FNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       134 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      . .+|...   .+|+.|++++|.+. .+|..+..+++|
T Consensus       415 s-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        415 T-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             C-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC
Confidence            6 355432   35667788888876 577777666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.16  E-value=4.7e-12  Score=93.54  Aligned_cols=100  Identities=27%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccC-CcCCCccc------c-ccceEe
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLF-NKLSSEFS------C-SLKRLF   79 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~------~-~L~~L~   79 (171)
                      +.+.++|..|.|+...+..|+.+++|++ |++.|.++...|..|.+++++..|-+.+ |+++ .+|      + +++-|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            3456788888888877778888888888 8888888766677788888776666555 6665 333      3 444444


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKF  109 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~  109 (171)
                      +.-|.+.-...+.+..++++..|.+.+|.+
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            444444433333444444444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=3.4e-11  Score=91.83  Aligned_cols=146  Identities=35%  Similarity=0.409  Sum_probs=79.4

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcc-hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEe
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLR-SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~   79 (171)
                      ++.++.+++.++.++. ++.....+. +|+. ++++|.+. .+|..++.+++|+.|+++.|++....+    . .++.|+
T Consensus       115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            4456666666666665 344444553 6666 66666665 555556666666666666666653333    3 566666


Q ss_pred             cccccccccChhhhhcCcCCcEEEccccc-----------------------ccccccccccCCCCCceEecccCccchh
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNK-----------------------FSGELLASTKNLKSLEVLAINKCNFFNR  136 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-----------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~  136 (171)
                      +++|++. .+|..+.....|+++.+++|+                       +. .++..++.+.+++.|++++|.+. .
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~  269 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-S  269 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-c
Confidence            6666665 344443344445555555553                       32 22344445555555555555554 2


Q ss_pred             hhHHhhccccCceEecccCccc
Q 040410          137 ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       137 ~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++. ++...+++++++++|.+.
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccc-ccccCccCEEeccCcccc
Confidence            222 455555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=8.3e-12  Score=89.74  Aligned_cols=120  Identities=21%  Similarity=0.160  Sum_probs=60.7

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecccc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSC   83 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~   83 (171)
                      |+++||++|.|+. +.++..-++.++. ++++|.+. .+. .+..+++|+.||+++|.++....    + ++++|.++.|
T Consensus       286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            4555566655554 3444555555555 66665554 222 25555556666666655543222    3 5555555555


Q ss_pred             cccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccc
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~  134 (171)
                      .+.  ...+++.+.+|..|++.+|.+.. .-...|++++.|+++.+-+|.+.
T Consensus       363 ~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  363 KIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            553  22344555555555555555542 11234555555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=9.8e-11  Score=89.30  Aligned_cols=130  Identities=29%  Similarity=0.357  Sum_probs=77.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceE
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRL   78 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L   78 (171)
                      ..+++|+.|++++|.++. ++...+..+.|+. ++++|.+. .+|..+.....|+++.+++|.......    . .+..+
T Consensus       160 ~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         160 RNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence            444555555555555544 2333334455555 55555554 444433333345555555553211111    2 44555


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhH
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF  139 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  139 (171)
                      .+..|++. ..+..++.++.++.+++.+|.++ .++. ++...+++.++++++.+....+.
T Consensus       238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            55555554 23567788889999999999998 5555 88999999999999988755444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=4.2e-10  Score=82.04  Aligned_cols=155  Identities=16%  Similarity=0.111  Sum_probs=107.4

Q ss_pred             cccCCCCcEEEeecccccCCCCCcc----CCcchhhh-hcCCCccCCcC-------------CccCCCCCCCcEEEccCC
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLS----GNLRSLKE-DLSKNNSSGEL-------------PTSIGNLFPLKELDFLFN   65 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~-~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~   65 (171)
                      +...+.|++++||.|.+....++.+    .+...|++ .+.+|.+....             -..+.+-++|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4456789999999999987666544    46688999 99999876321             222445678999999999


Q ss_pred             cCCCccc---------c-ccceEecccccccc----cChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEe
Q 040410           66 KLSSEFS---------C-SLKRLFLVSCNFWE----KVPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLA  127 (171)
Q Consensus        66 ~~~~~~~---------~-~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~  127 (171)
                      ++.....         + .++.+++..|++..    ....++..+++|+.|++.+|.++..    +.+.++.+++|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            8864332         4 78888888887742    2345667788888888888877632    344556777888888


Q ss_pred             cccCccchhhhHHh-----hccccCceEecccCccc
Q 040410          128 INKCNFFNRILFLL-----RNLIQLIILHLSQNSFR  158 (171)
Q Consensus       128 l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~  158 (171)
                      +++|.+...-..++     ...++|+.+.+.+|.+.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            88887654322222     22356777777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1e-10  Score=84.19  Aligned_cols=125  Identities=22%  Similarity=0.187  Sum_probs=100.3

Q ss_pred             Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEEc
Q 040410           30 NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDL  104 (171)
Q Consensus        30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l  104 (171)
                      .++.|.+ |+++|.++ .+-+++.-.|+++.|+++.|.+.....   + +++.|++++|.++ .+..+-..+.++++|.+
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            5678889 99999987 677788888999999999998874433   5 8999999999887 45555567788999999


Q ss_pred             ccccccccccccccCCCCCceEecccCccchhhh--HHhhccccCceEecccCcccc
Q 040410          105 VFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL--FLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       105 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      ++|.+. . ...+.++.+|..||+.+|++.. +.  ..+++++-|+++.+.+|++.+
T Consensus       360 a~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIE-T-LSGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHh-h-hhhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccc
Confidence            999886 2 3567888999999999998862 22  347888889999999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=4.8e-10  Score=62.89  Aligned_cols=60  Identities=32%  Similarity=0.316  Sum_probs=53.4

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcC
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKL   67 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   67 (171)
                      ++|++|++++|.++...+..|..+++|++ ++++|.+....+..|.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999999877778999999999 9999999855566899999999999999974

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=7.7e-10  Score=62.06  Aligned_cols=60  Identities=32%  Similarity=0.278  Sum_probs=36.1

Q ss_pred             CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +|++|++++|.+..-.+..+..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666622224556666666666666666644445566666666666666653

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=1.1e-09  Score=74.08  Aligned_cols=110  Identities=25%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             cCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccc-cC
Q 040410           46 ELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KN  119 (171)
Q Consensus        46 ~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~  119 (171)
                      ..+. +.+..+++.|++.+|.++..-.    + +++.|+++.|.+.. + +++..++.|++|++++|.++ .+.+.+ ..
T Consensus        11 ~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~   86 (175)
T PF14580_consen   11 QIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKN   86 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH
T ss_pred             cccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHh
Confidence            3443 4455678999999999874322    5 89999999999984 3 36778899999999999998 555545 36


Q ss_pred             CCCCceEecccCccchh-hhHHhhccccCceEecccCcccc
Q 040410          120 LKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       120 l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|++|++++|.+... --..+..+++|+.|++.+|++..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            89999999999998642 11456788999999999999974

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4e-10  Score=84.37  Aligned_cols=154  Identities=21%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             cccCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc------c
Q 040410            4 QAKKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS------C   73 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------~   73 (171)
                      ...+++++.|||+.|-+...  +.....+|++|+. +++.|.+..-.... -..+++++.|.+++|.+++.--      +
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            34678888888888877543  2334567888888 88888875211111 2256788888888888874322      4


Q ss_pred             -ccceEecccccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchh-hhH-----Hhhcc
Q 040410           74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNR-ILF-----LLRNL  144 (171)
Q Consensus        74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~-----~~~~~  144 (171)
                       +++.|++.+|............+..|+.|++++|.+- .++  ...+.++.|..|.++.|.+... .|+     .-...
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence             7777777777422222223334456788888877665 233  3456677777777777765421 111     12334


Q ss_pred             ccCceEecccCccc
Q 040410          145 IQLIILHLSQNSFR  158 (171)
Q Consensus       145 ~~L~~L~l~~n~~~  158 (171)
                      ++|++|++..|++.
T Consensus       301 ~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  301 PKLEYLNISENNIR  314 (505)
T ss_pred             ccceeeecccCccc
Confidence            67778888877774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.65  E-value=3.8e-09  Score=77.13  Aligned_cols=154  Identities=18%  Similarity=0.259  Sum_probs=95.3

Q ss_pred             ccCCCCcEEEeecccccCC----CCCccCCcchhhh-hcCCCcc---CCcCCc-------cCCCCCCCcEEEccCCcCCC
Q 040410            5 AKKKQHTYVRLQAKHYTGE----LPFLSGNLRSLKE-DLSKNNS---SGELPT-------SIGNLFPLKELDFLFNKLSS   69 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~-~l~~~~~---~~~~~~-------~~~~l~~L~~L~l~~~~~~~   69 (171)
                      -.+..++.++|++|.+...    +...+.+.+.|+. ++++-..   ...+|+       .+...++|+++||+.|-+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3567889999999988643    2334455566666 6654321   112333       33456789999999998765


Q ss_pred             ccc---------c-ccceEecccccccccC-------------hhhhhcCcCCcEEEcccccccccccc----cccCCCC
Q 040410           70 EFS---------C-SLKRLFLVSCNFWEKV-------------PHSINNFARLQWYDLVFNKFSGELLA----STKNLKS  122 (171)
Q Consensus        70 ~~~---------~-~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~l~~  122 (171)
                      ..+         + +|++|++.+|++.-..             ....+.-+.|+++..++|.+......    .+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            544         5 8888888888775211             11223446788888888877633222    2234456


Q ss_pred             CceEecccCccchh----hhHHhhccccCceEecccCccc
Q 040410          123 LEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       123 L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      |+.+.++.|.+..+    +..++..+++|+.||++.|.++
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            77777777765422    3345666777777777777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.8e-09  Score=80.92  Aligned_cols=152  Identities=25%  Similarity=0.208  Sum_probs=100.9

Q ss_pred             cCCCCcEEEeecccccCCCC-CccCCcchhhh-hcCCCccCCc--CCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410            6 KKKQHTYVRLQAKHYTGELP-FLSGNLRSLKE-DLSKNNSSGE--LPTSIGNLFPLKELDFLFNKLSSEFS------C-S   74 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~   74 (171)
                      +++.|+.+.|.++.+..... .....+++++. |++.|-+..+  +-....++|+|+.|+++.|++.-.+.      . .
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46678888888887764221 24556788888 8888877632  22345578888888888888764333      4 7


Q ss_pred             cceEecccccccccCh-hhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh--HHhhccccCceEe
Q 040410           75 LKRLFLVSCNFWEKVP-HSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL--FLLRNLIQLIILH  151 (171)
Q Consensus        75 L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~  151 (171)
                      ++.|.+++|+++..-- ...-.++++..|++.+|...........-+..|+.|++++|.+.. .+  ...+.++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            8888888888873222 233456888888888884222222333455678888888887753 33  4566777777777


Q ss_pred             cccCccc
Q 040410          152 LSQNSFR  158 (171)
Q Consensus       152 l~~n~~~  158 (171)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            7777664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=3.9e-08  Score=81.51  Aligned_cols=121  Identities=19%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCc--cCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN--SSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      ..+.+.+-++.+... +... ..+.|++ -+..|.  +....++.|..++.|++||+++|.-.+.+|     + +||+|+
T Consensus       524 ~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            445555555554331 1111 1124555 444443  321223336667777777777766555566     4 677777


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN  132 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  132 (171)
                      ++++.+. .+|.+++++..|.+|++..+......|.....+.+|++|.+....
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777776 678888888888888887766544555666667888888776543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=3.4e-09  Score=84.23  Aligned_cols=118  Identities=24%  Similarity=0.236  Sum_probs=72.9

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------cccceEeccc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------CSLKRLFLVS   82 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~L~~L~l~~   82 (171)
                      |.+.+.++|.+.. +..++.-++.++. +++.|++. ++. .+..+++|++||+++|.+. .+|      |.|+.|++.+
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            4555666666654 4556666777888 88888876 344 6777888888888888776 333      1566666666


Q ss_pred             ccccccChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCcc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNF  133 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~  133 (171)
                      |.++  ...++.++.+|+.||+++|-+.+.-- .-++.+..|..|.+.+|.+
T Consensus       242 N~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6664  23356666667777777666553211 2234445566666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=3.7e-08  Score=63.38  Aligned_cols=126  Identities=16%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             hcCCCccCCcCCcc---CCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410           37 DLSKNNSSGELPTS---IGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN  107 (171)
Q Consensus        37 ~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n  107 (171)
                      +++.|.+- .+++.   +.....|...++++|.+....+     . .++++++..|.+. .+|..+..++.|+.++++.|
T Consensus        33 dLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   33 DLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             ccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccC
Confidence            55555542 23332   3334455666777776653222     2 4667777777776 68888888899999999999


Q ss_pred             cccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccc
Q 040410          108 KFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~  166 (171)
                      ++. ..|+.+..+.++..|+..+|... ++|-.+--.+..-..+++++.+.+..+..+.
T Consensus       111 ~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  111 PLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             ccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            888 67888888888888888887765 5554422112233345677777665554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.35  E-value=2.1e-07  Score=66.46  Aligned_cols=157  Identities=20%  Similarity=0.135  Sum_probs=108.1

Q ss_pred             ccccCCCCcEEEeecccccCCCCCc----cCCcchhhh-hcCCCccCCcCCccCC-------------CCCCCcEEEccC
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFL----SGNLRSLKE-DLSKNNSSGELPTSIG-------------NLFPLKELDFLF   64 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~----~~~l~~L~~-~l~~~~~~~~~~~~~~-------------~l~~L~~L~l~~   64 (171)
                      .+.+++.+..++||.|.|....|+.    +++-..|++ .+++|.+.+....-++             +-|.|++++...
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4567889999999999988766654    455677888 9999987533222232             457899999999


Q ss_pred             CcCCCccc---------c-ccceEeccccccccc-----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCce
Q 040410           65 NKLSSEFS---------C-SLKRLFLVSCNFWEK-----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEV  125 (171)
Q Consensus        65 ~~~~~~~~---------~-~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~  125 (171)
                      |++.....         . .++++.+..|.+.-.     ...+..++.+|+.|++.+|.++..    +...++.++.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            98763222         3 678888888877521     222445668899999999887632    3345567788899


Q ss_pred             EecccCccchhhhHHh------hccccCceEecccCcccc
Q 040410          126 LAINKCNFFNRILFLL------RNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       126 L~l~~n~~~~~~~~~~------~~~~~L~~L~l~~n~~~~  159 (171)
                      |.+..|-++.+-..++      ...++|..|...+|...+
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            9998887654322222      223678888888887764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=6.7e-07  Score=74.38  Aligned_cols=81  Identities=28%  Similarity=0.320  Sum_probs=44.8

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      .|++|++++|.-.+.+|..++.+-+|+.|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+.
T Consensus       572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            5556666655555555666666666666666665555 556666666666666655554433334444445555555544


Q ss_pred             cC
Q 040410          154 QN  155 (171)
Q Consensus       154 ~n  155 (171)
                      ..
T Consensus       651 ~s  652 (889)
T KOG4658|consen  651 RS  652 (889)
T ss_pred             cc
Confidence            43

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=8.2e-08  Score=76.65  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410           56 PLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK  130 (171)
Q Consensus        56 ~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~  130 (171)
                      +|.+.+.++|.+.-.-.    + .+|.|+++.|+++..-  .+..+++|++||+++|.+. .+|..--.-..|+.|.+.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            34444455554432221    2 5666666666665322  5555666666666666665 4443111112366666666


Q ss_pred             CccchhhhHHhhccccCceEecccCccc
Q 040410          131 CNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      |.++. + ..+.++.+|..||+++|.+.
T Consensus       242 N~l~t-L-~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  242 NALTT-L-RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             cHHHh-h-hhHHhhhhhhccchhHhhhh
Confidence            65542 2 33556666666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=8.1e-08  Score=73.90  Aligned_cols=120  Identities=23%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccc
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSC   83 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~   83 (171)
                      .+..+++..|.+.. .-..+..+.+++. ++.+|.+. .+...+..+++|++|++++|.++...+   + .|+.|++.+|
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence            33444444444443 1223455555666 66666654 333335556666666666666654444   3 5566666666


Q ss_pred             cccccChhhhhcCcCCcEEEccccccccccccc-ccCCCCCceEecccCcc
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLAS-TKNLKSLEVLAINKCNF  133 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~  133 (171)
                      .+..  ...+..+..|+.+++++|.+... ... ...+.+++.+++..|.+
T Consensus       151 ~i~~--~~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  151 LISD--ISGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cchh--ccCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCch
Confidence            6542  12333355666666666655522 211 34455555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.24  E-value=1.4e-07  Score=72.60  Aligned_cols=148  Identities=27%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L   78 (171)
                      +..+++++.+++..|.+.. +...+..+++|++ ++++|.++ .+. .+..++.|+.|++.+|.+.....   + .++.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcchhccCCccchhhhcc
Confidence            6678889999999998876 2323778889999 99999887 444 37777889999999998874332   5 78888


Q ss_pred             ecccccccccChhh-hhcCcCCcEEEcccccccccccccccCCCC------------------------CceEecccCcc
Q 040410           79 FLVSCNFWEKVPHS-INNFARLQWYDLVFNKFSGELLASTKNLKS------------------------LEVLAINKCNF  133 (171)
Q Consensus        79 ~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~------------------------L~~L~l~~n~~  133 (171)
                      ++++|.+...-+ . ...+..++.+.+++|.+..  ...+.....                        |+.+++++|.+
T Consensus       168 ~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  168 DLSYNRIVDIEN-DELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             cCCcchhhhhhh-hhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcc
Confidence            888888874333 1 3566677777777776541  111222222                        45555555555


Q ss_pred             chhhhHHhhccccCceEecccCccc
Q 040410          134 FNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       134 ~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      . ..+..+..+..+..+++..|.+.
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             c-cccccccccccccccchhhcccc
Confidence            4 22234445555666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=5.1e-07  Score=64.57  Aligned_cols=153  Identities=20%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             ccCCCCcEEEeecccccCC----CCCccCCcchhhh-hcCCCccC---Cc-------CCccCCCCCCCcEEEccCCcCCC
Q 040410            5 AKKKQHTYVRLQAKHYTGE----LPFLSGNLRSLKE-DLSKNNSS---GE-------LPTSIGNLFPLKELDFLFNKLSS   69 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~-~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~   69 (171)
                      ..+..++.++||+|.|...    +...+..-++|+. +++.-...   ..       +.+.+.++|+|+..+++.|-+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3467889999999988653    2233344455555 55443211   11       22234456777777777777665


Q ss_pred             ccc---------c-ccceEecccccccccChhhhh-------------cCcCCcEEEccccccccccccccc-----CCC
Q 040410           70 EFS---------C-SLKRLFLVSCNFWEKVPHSIN-------------NFARLQWYDLVFNKFSGELLASTK-----NLK  121 (171)
Q Consensus        70 ~~~---------~-~L~~L~l~~~~~~~~~~~~~~-------------~l~~L~~l~l~~n~~~~~~~~~~~-----~l~  121 (171)
                      ..|         . .+.+|.+++|++.-..-..++             .-+.|+++..+.|++. ..+...+     .-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence            554         2 577777777766411111111             2245666666666654 2222111     113


Q ss_pred             CCceEecccCccchh-----hhHHhhccccCceEecccCccc
Q 040410          122 SLEVLAINKCNFFNR-----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       122 ~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      .|..+.+..|.++-+     +-..+.-+++|+.||++.|.++
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            455555555555422     0011222345555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=2.4e-07  Score=59.72  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             CCcEEEccCCcCCCccc--------c-ccceEecccccccccChhhhhc-CcCCcEEEcccccccccccccccCCCCCce
Q 040410           56 PLKELDFLFNKLSSEFS--------C-SLKRLFLVSCNFWEKVPHSINN-FARLQWYDLVFNKFSGELLASTKNLKSLEV  125 (171)
Q Consensus        56 ~L~~L~l~~~~~~~~~~--------~-~L~~L~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~  125 (171)
                      .+-.+++++|.+- .++        . .+..+++++|.+. .+|..|.. .+.+++++++.|.++ .+|..++.++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3456678888654 233        2 6777899999998 56666654 468999999999998 78988999999999


Q ss_pred             EecccCccchhhhHHhhccccCceEecccCccc
Q 040410          126 LAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       126 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      +.++.|.+. ..|..+..+.++-.|+..+|...
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            999999998 45777888888889998888775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=3.4e-06  Score=43.78  Aligned_cols=36  Identities=31%  Similarity=0.313  Sum_probs=17.8

Q ss_pred             CCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410          122 SLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       122 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      +|++|++++|.+. .+|..++++++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=5e-08  Score=70.45  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cC-CcCCccCCCCCCCcEEEccCCcCCCccc-------c-c
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SS-GELPTSIGNLFPLKELDFLFNKLSSEFS-------C-S   74 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~-~   74 (171)
                      .++.|+.|.+.++.+.+.+...+++-.+|+. +++.|. ++ ..+.--+.++..|..|++++|.+.....       - +
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            4555666666666666655566666666777 666654 22 0112224456667777777776543222       2 5


Q ss_pred             cceEeccccccc---ccChhhhhcCcCCcEEEccccc-ccccccccccCCCCCceEecccCccchhhhHH---hhccccC
Q 040410           75 LKRLFLVSCNFW---EKVPHSINNFARLQWYDLVFNK-FSGELLASTKNLKSLEVLAINKCNFFNRILFL---LRNLIQL  147 (171)
Q Consensus        75 L~~L~l~~~~~~---~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~L  147 (171)
                      +..|+++++.-.   ..+..-...++++.+||++++. +.......+.+++-|++|.++.|..-  +|..   +...++|
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcce
Confidence            666666665321   1122223456777777777653 34344455667777777777777532  3332   4555677


Q ss_pred             ceEecccC
Q 040410          148 IILHLSQN  155 (171)
Q Consensus       148 ~~L~l~~n  155 (171)
                      .+||+.++
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            77776553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=4e-06  Score=43.52  Aligned_cols=36  Identities=28%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             CCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410           98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  134 (171)
                      +|++|++++|.+. .+|..++++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5667777777776 56666677777777777777665

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=3.8e-05  Score=58.58  Aligned_cols=75  Identities=20%  Similarity=0.197  Sum_probs=44.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVS   82 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~   82 (171)
                      +..+.+++.|++++|.++. +|..   ..+|++ .+++|.-...+|..+  .++|+.|++.+|.....+|-+|+.|.+..
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~  121 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPVL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKG  121 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCCC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeCC
Confidence            3456788899999887765 3421   234777 777654333556544  24788888887732223332555566554


Q ss_pred             cc
Q 040410           83 CN   84 (171)
Q Consensus        83 ~~   84 (171)
                      +.
T Consensus       122 n~  123 (426)
T PRK15386        122 SA  123 (426)
T ss_pred             CC
Confidence            43

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=1.7e-05  Score=57.66  Aligned_cols=153  Identities=17%  Similarity=0.112  Sum_probs=86.8

Q ss_pred             CCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccc
Q 040410            7 KKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLK   76 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~   76 (171)
                      .+.++.+||.+|.+++.  +...+.++++|++ +++.|++...+...-..+.+|+++-+.+..+.+...      + .++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            45667777877777542  3344567788888 888887763222111355677777777776654432      3 455


Q ss_pred             eEeccccccc-----ccChhh------------------------hhcCcCCcEEEccccccccccc-ccccCCCCCceE
Q 040410           77 RLFLVSCNFW-----EKVPHS------------------------INNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVL  126 (171)
Q Consensus        77 ~L~l~~~~~~-----~~~~~~------------------------~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L  126 (171)
                      +|+++.|+..     +...+.                        ...++++..+-+..|++...-. +.....+.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            6666655221     000000                        0012445545455554432111 233345666677


Q ss_pred             ecccCccchh-hhHHhhccccCceEecccCcccc
Q 040410          127 AINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       127 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      .++.+.+... ..+++..++.|+.|.+.++++..
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            7887777642 22567788889999999888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=8.6e-07  Score=64.20  Aligned_cols=149  Identities=17%  Similarity=0.127  Sum_probs=101.5

Q ss_pred             CcEEEeecccccCC-CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-------c-ccceEe
Q 040410           10 HTYVRLQAKHYTGE-LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-------C-SLKRLF   79 (171)
Q Consensus        10 L~~L~L~~~~~~~~-~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~-~L~~L~   79 (171)
                      ++.+||+...++.. .-..++...+|+. .+.++.+.+.+-..+..-.+|+.++++.+.=-....       | .|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            66778887776532 1223456678888 888888876666667788899999999874222222       6 899999


Q ss_pred             cccccccccChh-hhhcC-cCCcEEEccccc--ccc-cccccccCCCCCceEecccCccc-hhhhHHhhccccCceEecc
Q 040410           80 LVSCNFWEKVPH-SINNF-ARLQWYDLVFNK--FSG-ELLASTKNLKSLEVLAINKCNFF-NRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        80 l~~~~~~~~~~~-~~~~l-~~L~~l~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~  153 (171)
                      +++|........ .+... ++|+.|+++++.  +.. .+..-..+++.+.+||+++|... ...-.++.+.+.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            999977533222 12221 578889998763  111 22223357889999999998653 3344567888999999999


Q ss_pred             cCccc
Q 040410          154 QNSFR  158 (171)
Q Consensus       154 ~n~~~  158 (171)
                      .|..-
T Consensus       347 RCY~i  351 (419)
T KOG2120|consen  347 RCYDI  351 (419)
T ss_pred             hhcCC
Confidence            88753

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=9.1e-06  Score=66.17  Aligned_cols=16  Identities=25%  Similarity=0.289  Sum_probs=8.1

Q ss_pred             CCCCCcEEEccCCcCC
Q 040410           53 NLFPLKELDFLFNKLS   68 (171)
Q Consensus        53 ~l~~L~~L~l~~~~~~   68 (171)
                      ++|+|+.||+++++++
T Consensus       171 sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS  186 (699)
T ss_pred             ccCccceeecCCCCcc
Confidence            4455555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00018  Score=54.99  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             Ccchhhh-hcCCCccCCcCCccCCCCC-CCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEE
Q 040410           30 NLRSLKE-DLSKNNSSGELPTSIGNLF-PLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYD  103 (171)
Q Consensus        30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  103 (171)
                      .+.+++. ++++|.+. .+|    .+| +|+.|.+++|.-...+|   . +|+.|.+.+|.....+|.      +|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEE
Confidence            4567778 88988776 666    233 69999999876555666   3 899999998843334554      355555


Q ss_pred             cccccc--cccccccccCC------------------CCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410          104 LVFNKF--SGELLASTKNL------------------KSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus       104 l~~n~~--~~~~~~~~~~l------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      +..+..  -+.+|.++..+                  .+|++|++++|... .+|..+-  .+|+.|.++.+
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            554432  12455444332                  36777888777654 3343222  46777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.0003  Score=48.49  Aligned_cols=98  Identities=21%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccC-hhhhhcCcCCcEEEc
Q 040410           33 SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKV-PHSINNFARLQWYDL  104 (171)
Q Consensus        33 ~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l  104 (171)
                      .... |+++|.+. .++ .|..++.|.+|.+++|+++..-|     . .+.+|.+.+|++.... ......++.|+.|.+
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            3445 88888875 444 47788899999999999986666     3 6899999999886221 123456788999999


Q ss_pred             cccccccccc---ccccCCCCCceEecccCc
Q 040410          105 VFNKFSGELL---ASTKNLKSLEVLAINKCN  132 (171)
Q Consensus       105 ~~n~~~~~~~---~~~~~l~~L~~L~l~~n~  132 (171)
                      -+|++...--   -.++.+++|+.||++.-.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9998874211   246788999999987643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.25  E-value=0.00022  Score=58.34  Aligned_cols=126  Identities=25%  Similarity=0.270  Sum_probs=84.0

Q ss_pred             chhhh-hcCCCcc-CCcCCccCC-CCCCCcEEEccCCcCCCc-cc-----c-ccceEecccccccccChhhhhcCcCCcE
Q 040410           32 RSLKE-DLSKNNS-SGELPTSIG-NLFPLKELDFLFNKLSSE-FS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQW  101 (171)
Q Consensus        32 ~~L~~-~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~  101 (171)
                      .+|++ +++|... ...+|..++ -+|+|+.|.+.+-.+... +.     . +|+.|++++++++..  .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56777 7777542 233444444 378899988887665322 12     4 788899999888743  67888888888


Q ss_pred             EEcccccccc-cccccccCCCCCceEecccCccchh--hhHH----hhccccCceEecccCcccc
Q 040410          102 YDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNR--ILFL----LRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       102 l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~----~~~~~~L~~L~l~~n~~~~  159 (171)
                      |.+.+-.+.. .--..+.++++|+.||+|.......  +...    -..+++|+.||+++..+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            8887766652 2224567889999999987654321  1111    2336889999999887754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.19  E-value=0.00045  Score=47.63  Aligned_cols=95  Identities=19%  Similarity=0.074  Sum_probs=44.7

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCcc---c---c-ccceEecc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF---S---C-SLKRLFLV   81 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~---~-~L~~L~l~   81 (171)
                      ...+||++|.+..  -..+..++.|++ .+..|.++...|.--.-+++|+.|.+.+|.+....   |   | +|++|.+-
T Consensus        44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            3345555555432  223445555666 66666555222222223455666666665543211   1   4 56666655


Q ss_pred             cccccccCh---hhhhcCcCCcEEEccc
Q 040410           82 SCNFWEKVP---HSINNFARLQWYDLVF  106 (171)
Q Consensus        82 ~~~~~~~~~---~~~~~l~~L~~l~l~~  106 (171)
                      +|.++..--   .-+..+++|++||+..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            555542110   0123456666666643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.85  E-value=0.0011  Score=47.33  Aligned_cols=55  Identities=25%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cCcCCcEEEcccccccccccccc---cCCCCCceEecccCccchh---hhHHhhccccCceEe
Q 040410           95 NFARLQWYDLVFNKFSGELLAST---KNLKSLEVLAINKCNFFNR---ILFLLRNLIQLIILH  151 (171)
Q Consensus        95 ~l~~L~~l~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~  151 (171)
                      .+++|+++++++|.+..  +.++   ..+.+|..|+++.|..+..   --..+.-+++|++||
T Consensus        89 ~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            44667777777776642  3323   3445666777776654421   112234445666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.0012  Score=48.37  Aligned_cols=81  Identities=25%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             ccceEecccccccc--cChhhhhcCcCCcEEEcccccccccccccc-cCCCCCceEecccCccch-hhhHHhhccccCce
Q 040410           74 SLKRLFLVSCNFWE--KVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFN-RILFLLRNLIQLII  149 (171)
Q Consensus        74 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~  149 (171)
                      .++++++.+|.+++  .+.....+++.|++|+++.|.+.-. -+.+ ....+|+.|-+.+..+.- .....+..++.++.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            55666666666541  1222334566777777777665421 1122 244566666665554321 12233444455555


Q ss_pred             EecccC
Q 040410          150 LHLSQN  155 (171)
Q Consensus       150 L~l~~n  155 (171)
                      |+++.|
T Consensus       151 lHmS~N  156 (418)
T KOG2982|consen  151 LHMSDN  156 (418)
T ss_pred             hhhccc
Confidence            555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.69  E-value=0.00076  Score=29.30  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=11.9

Q ss_pred             CceEecccCccccccCccccc
Q 040410          147 LIILHLSQNSFRGRIKLDFEL  167 (171)
Q Consensus       147 L~~L~l~~n~~~~~~p~~~~~  167 (171)
                      |++|++++|.+. .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 55655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0016  Score=28.24  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=14.7

Q ss_pred             CCcEEEeecccccCCCCCccCC
Q 040410            9 QHTYVRLQAKHYTGELPFLSGN   30 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~   30 (171)
                      +|++|++++|.++ .+|..+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4778888888887 46655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00039  Score=50.36  Aligned_cols=95  Identities=23%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             cchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccCh-hhhhcCcCCcEEEc
Q 040410           31 LRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVP-HSINNFARLQWYDL  104 (171)
Q Consensus        31 l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l  104 (171)
                      +.+++. +.-+|.+. ++. ....|+.|++|.|+-|.++..-|   | .|++|++..|.+.+.-. ..+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            445555 66666665 333 35678899999999999886666   7 89999999998874322 24568899999999


Q ss_pred             ccccccccccc-----cccCCCCCceEe
Q 040410          105 VFNKFSGELLA-----STKNLKSLEVLA  127 (171)
Q Consensus       105 ~~n~~~~~~~~-----~~~~l~~L~~L~  127 (171)
                      ..|+..+.-+.     .+.-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            99987765443     223456666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.24  E-value=0.0026  Score=45.45  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccc--cccccccccccCCCCCceEecccCccchh-hhHHhhccccCceE
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN--KFSGELLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIIL  150 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L  150 (171)
                      .++.+.+.+..++.  -..+..+++|+.|.++.|  ++.+.++-..-.+++|+++.+++|.+... -...+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            55566655555542  224567788999999998  66665554444558999999999987621 11235666778888


Q ss_pred             ecccCccc
Q 040410          151 HLSQNSFR  158 (171)
Q Consensus       151 ~l~~n~~~  158 (171)
                      ++.+|...
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            88887765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00076  Score=48.89  Aligned_cols=66  Identities=23%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc--cCCCCCCCcEEEccCCcCCCccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT--SIGNLFPLKELDFLFNKLSSEFS   72 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~   72 (171)
                      +.+++.|++|.|+-|.|+.  -..+..+++|++ ++..|.+. ++-+  .+.++|+|+.|.+..|...+.-+
T Consensus        37 c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            3478899999999999986  345778899999 99999886 4433  47789999999999998876544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.92  E-value=0.031  Score=35.54  Aligned_cols=15  Identities=33%  Similarity=0.439  Sum_probs=7.0

Q ss_pred             CCCCCCCcEEEccCC
Q 040410           51 IGNLFPLKELDFLFN   65 (171)
Q Consensus        51 ~~~l~~L~~L~l~~~   65 (171)
                      |..+++++.+.+..+
T Consensus        31 F~~~~~l~~i~~~~~   45 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN   45 (129)
T ss_dssp             TTT-TT-SEEEESST
T ss_pred             ccccccccccccccc
Confidence            444555666665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.0077  Score=41.65  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccc-cccccccccCC-CCCceEecccCc-cchhhhHHhhccccCceE
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKF-SGELLASTKNL-KSLEVLAINKCN-FFNRILFLLRNLIQLIIL  150 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~-~~~~~~~~~~l-~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L  150 (171)
                      .++.++.++..+...--+.+..++.++.+.+.++.- .+..-+.++.. .+|+.|++++|. ++..-...+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456666666555544444455555555555555432 11112222222 466666666553 332222334555555555


Q ss_pred             ecc
Q 040410          151 HLS  153 (171)
Q Consensus       151 ~l~  153 (171)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.00  E-value=0.018  Score=44.89  Aligned_cols=121  Identities=25%  Similarity=0.211  Sum_probs=64.1

Q ss_pred             cchhhh-hcCCCccCCc--CCccCCCCCCCcEEEccCC-cCCCccc---------c-ccceEeccccc-ccccChhhhhc
Q 040410           31 LRSLKE-DLSKNNSSGE--LPTSIGNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCN-FWEKVPHSINN   95 (171)
Q Consensus        31 l~~L~~-~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~-~~~~~~~~~~~   95 (171)
                      .+.++. .+..+.-...  .-+.....+.|+.++++++ ......+         + .++.+++..+. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455666 5555532222  2234556677788877763 1111111         4 67777777766 55444444433


Q ss_pred             -CcCCcEEEccccc-ccccccccc-cCCCCCceEecccCccch--hhhHHhhccccCceEe
Q 040410           96 -FARLQWYDLVFNK-FSGELLAST-KNLKSLEVLAINKCNFFN--RILFLLRNLIQLIILH  151 (171)
Q Consensus        96 -l~~L~~l~l~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~  151 (171)
                       +++|+.|.+..+. +++..-..+ ..+++|++|+++.|....  .+.....++++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence             5677777766665 443333333 345668888877776532  1223334455555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.96  E-value=0.11  Score=33.01  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=54.3

Q ss_pred             cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                      .|....+|+.+.+... +...    +. + +++.+.+..+ +...-...+..+.+++.+.+.. .+..-....+..++++
T Consensus         7 ~F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            3556678888888743 3311    11 5 7888888764 5433344566777899998865 3331223456678899


Q ss_pred             ceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      +.+.+..+ +...-...+..+ +++.+.+..+ +..--...|.++++
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTK  127 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCcccccccc
Confidence            99998765 432233456776 8888887753 22222344555444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.24  E-value=0.0012  Score=51.79  Aligned_cols=154  Identities=22%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             ccCCCCcEEEeecccccCCC----CCccCCc-chhhh-hcCCCccCC----cCCccCCCCCCCcEEEccCCcCCCcc---
Q 040410            5 AKKKQHTYVRLQAKHYTGEL----PFLSGNL-RSLKE-DLSKNNSSG----ELPTSIGNLFPLKELDFLFNKLSSEF---   71 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~----~~~~~~l-~~L~~-~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~---   71 (171)
                      ....+|..|++++|.+++..    ...+... ..+++ .+..|.++.    .+.+.+...+.++.++++.|.+....   
T Consensus       112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~  191 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV  191 (478)
T ss_pred             cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence            34556677777777776421    1222232 45555 666666542    23333445667777777777663111   


Q ss_pred             ----------cc-ccceEeccccccccc----ChhhhhcCcC-CcEEEccccccccc----ccccccCC-CCCceEeccc
Q 040410           72 ----------SC-SLKRLFLVSCNFWEK----VPHSINNFAR-LQWYDLVFNKFSGE----LLASTKNL-KSLEVLAINK  130 (171)
Q Consensus        72 ----------~~-~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~l~l~~n~~~~~----~~~~~~~l-~~L~~L~l~~  130 (171)
                                +. ++++|++.+|.++..    +...+...+. +..+++..|.+.+.    +.+.+..+ ..++.++++.
T Consensus       192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~  271 (478)
T KOG4308|consen  192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR  271 (478)
T ss_pred             HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence                      12 577777777776522    1122334444 56677877776643    22334444 5678888888


Q ss_pred             Cccchh----hhHHhhccccCceEecccCccc
Q 040410          131 CNFFNR----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       131 n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      |.+...    +...+.+++.++++.+++|.+.
T Consensus       272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             CCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            877643    4445566677888888888764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.09  E-value=0.042  Score=24.09  Aligned_cols=17  Identities=18%  Similarity=0.235  Sum_probs=7.3

Q ss_pred             CCCceEecccCccchhh
Q 040410          121 KSLEVLAINKCNFFNRI  137 (171)
Q Consensus       121 ~~L~~L~l~~n~~~~~~  137 (171)
                      ++|+.|++++|.++++.
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            34555555555554433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.73  E-value=0.049  Score=21.86  Aligned_cols=10  Identities=40%  Similarity=0.438  Sum_probs=3.5

Q ss_pred             CcEEEccccc
Q 040410           99 LQWYDLVFNK  108 (171)
Q Consensus        99 L~~l~l~~n~  108 (171)
                      |+.|++++|.
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            4444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.71  E-value=0.00097  Score=47.17  Aligned_cols=84  Identities=20%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             CCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCce
Q 040410           51 IGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEV  125 (171)
Q Consensus        51 ~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~  125 (171)
                      +..+...+.||++.|++-....    + .+..++++.|.+- ..|..++....++.+++..|..+ ..|.+++..+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            5566778888888886542222    4 6777777777776 67888888888888888888777 77888999899999


Q ss_pred             EecccCccchh
Q 040410          126 LAINKCNFFNR  136 (171)
Q Consensus       126 L~l~~n~~~~~  136 (171)
                      ++.-.+.+...
T Consensus       116 ~e~k~~~~~~~  126 (326)
T KOG0473|consen  116 NEQKKTEFFRK  126 (326)
T ss_pred             hhhccCcchHH
Confidence            88888876543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.76  E-value=0.008  Score=42.71  Aligned_cols=61  Identities=18%  Similarity=0.048  Sum_probs=47.2

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS   69 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   69 (171)
                      ++.+.+++++.|.+.- .|.+++++..+++ +.+.|..+ ..|.+++..+.+++++.-.+.+..
T Consensus        64 ~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             HHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence            4445555666555543 6888888888999 88888887 889999999999999998887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.41  E-value=0.1  Score=23.28  Aligned_cols=17  Identities=6%  Similarity=-0.003  Sum_probs=13.0

Q ss_pred             CCCCcEEEeecccccCC
Q 040410            7 KKQHTYVRLQAKHYTGE   23 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~   23 (171)
                      +++|++|+|++|.+...
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            46788888888888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.41  E-value=0.1  Score=23.28  Aligned_cols=17  Identities=6%  Similarity=-0.003  Sum_probs=13.0

Q ss_pred             CCCCcEEEeecccccCC
Q 040410            7 KKQHTYVRLQAKHYTGE   23 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~   23 (171)
                      +++|++|+|++|.+...
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            46788888888888764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.21  E-value=0.4  Score=37.47  Aligned_cols=105  Identities=20%  Similarity=0.187  Sum_probs=69.1

Q ss_pred             CCCCcEEEccCCcCCCc---cc----c-ccceEecccc-cccccCh----hhhhcCcCCcEEEccccc-ccccccccccC
Q 040410           54 LFPLKELDFLFNKLSSE---FS----C-SLKRLFLVSC-NFWEKVP----HSINNFARLQWYDLVFNK-FSGELLASTKN  119 (171)
Q Consensus        54 l~~L~~L~l~~~~~~~~---~~----~-~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~  119 (171)
                      .+.|+.+.+.++.-...   .+    + .++.|+++.+ ......+    .....+.+++.+++..+. +++..-..++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            57788888877643322   23    5 8999999873 2211111    123345789999999887 66555555554


Q ss_pred             -CCCCceEecccCc-cchh-hhHHhhccccCceEecccCccc
Q 040410          120 -LKSLEVLAINKCN-FFNR-ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       120 -l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                       +++|+.|.+..|. ++.. +-.....+++|++|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence             6799999988777 4433 3344566788999999987653

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.26  E-value=1.1  Score=20.43  Aligned_cols=15  Identities=20%  Similarity=0.231  Sum_probs=9.0

Q ss_pred             CCCceEecccCccch
Q 040410          121 KSLEVLAINKCNFFN  135 (171)
Q Consensus       121 ~~L~~L~l~~n~~~~  135 (171)
                      ++|++|++++|.+..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            356666666666653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.98  E-value=0.78  Score=20.65  Aligned_cols=16  Identities=6%  Similarity=-0.014  Sum_probs=12.6

Q ss_pred             CCCCcEEEeecccccC
Q 040410            7 KKQHTYVRLQAKHYTG   22 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~   22 (171)
                      +++|+.|+|+.|.|+.
T Consensus         1 L~~L~~L~L~~NkI~~   16 (26)
T smart00365        1 LTNLEELDLSQNKIKK   16 (26)
T ss_pred             CCccCEEECCCCccce
Confidence            4678889998888854

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.78  E-value=0.24  Score=34.53  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             CCcEEEcccccccccccccccCCCCCceEecccCccch-hhhHHhhc-cccCceEecccCc
Q 040410           98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN-RILFLLRN-LIQLIILHLSQNS  156 (171)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~-~~~L~~L~l~~n~  156 (171)
                      .++.++-++..+....-+.+.++++++.|.+.+|...+ .--+.+++ .++|+.|+++.|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            47888888888887777888899999999998886433 22223333 4789999999775

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.86  E-value=1  Score=20.28  Aligned_cols=18  Identities=22%  Similarity=0.218  Sum_probs=13.2

Q ss_pred             ccCceEecccCccccccCc
Q 040410          145 IQLIILHLSQNSFRGRIKL  163 (171)
Q Consensus       145 ~~L~~L~l~~n~~~~~~p~  163 (171)
                      ++|++|++++|++. .+|.
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35788888888887 4564

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 4   QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62
           Q  K     + LQ   +TG++P    N   L    LS N  SG +P+S+G+L  L++L  
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 63  LFNKLSSE------FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS 116
             N L  E      +  +L+ L L   +   ++P  ++N   L W  L  N+ +GE+   
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 117 TKNLKSLEVLAI 128
              L++L +L +
Sbjct: 507 IGRLENLAILKL 518

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 4   QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62
           Q  K     + LQ   +TG++P    N   L    LS N  SG +P+S+G+L  L++L  
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 63  LFNKLSSE------FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS 116
             N L  E      +  +L+ L L   +   ++P  ++N   L W  L  N+ +GE+   
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 117 TKNLKSLEVLAI 128
              L++L +L +
Sbjct: 510 IGRLENLAILKL 521

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 1e-20
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF------SC 73
           TG++P    N   L    LS N  SG +P+S+G+L  L++L    N L  E         
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133
           +L+ L L   +   ++P  ++N   L W  L  N+ +GE+      L++L +L ++  +F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 134 FNRILFLLRNLIQLIILHLSQNSFRGRI 161
              I   L +   LI L L+ N F G I
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
            ++ + + +++  +PFL G+  +L+  D+S N  SG+   +I     LK L+   N+   
Sbjct: 203 EFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 70  EFS----CSLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
                   SL+ L L    F  ++P  +      L   DL  N F G +     +   LE
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 125 VLAINKCNFFNRI-LFLLRNLIQLIILHLSQNSFRGRI 161
            LA++  NF   + +  L  +  L +L LS N F G +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 5e-18
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 21  TGELPFLS-GNLRSLKE-DLSKNNSSGELPTSIGNLFP-LKELDFLFNKLSSE------- 70
           +GELP  +   +R LK  DLS N  SGELP S+ NL   L  LD   N  S         
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 71  -FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAIN 129
               +L+ L+L +  F  K+P +++N + L    L FN  SG + +S  +L  L  L + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 130 KCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
                  I   L  +  L  L L  N   G I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCS----- 74
            GE+P     +++L+   L  N+ +GE+P+ + N   L  +    N+L+ E         
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 75  -LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE--------- 124
            L  L L + +F   +P  + +   L W DL  N F+G + A+                 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

Query: 125 -------------VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
                          A N   F       L  L      +++   + G  
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLF 79
           TGE+P   G L +L    LS N+ SG +P  +G+   L  LD   N  +     ++ +  
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 80  --LVSCNFWEKVPHSINNFARLQWYDLVFN--KFSGELLASTKNLKSLEVLAINKCNFFN 135
             + +     K    I N    +      N  +F G        L +     I    +  
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 136 RILFLLRNLIQLIILHLSQNSFRGRI 161
                  N   ++ L +S N   G I
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYI 648

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 28  SGNLRSLKEDLSKNN---SSGELPTSIGNLFPLKELDFLFNKLSSEFS-----CSLKRLF 79
              + S+  DLS          + +S+ +L  L+ L    + ++   S      SL  L 
Sbjct: 49  DDKVTSI--DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 80  LVSCNFWEKVP--HSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNR 136
           L   +    V    S+ + + L++ ++  N        S    L SLEVL ++  +    
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 137 I---LFLLRNLIQLIILHLSQNSFRGRI 161
                 L     +L  L +S N   G +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDV 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 16/153 (10%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC------- 73
             +     +L  L+   LS ++ +G +         L  LD   N LS   +        
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 74  -SLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSGEL---LASTKNLKSLEVLAI 128
             LK L + S         S       L+  DL  N  SG        +     L+ LAI
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 129 NKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
           +       +       + L  L +S N+F   I
Sbjct: 186 SGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 19/117 (16%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
               + ++ Y G       N  S+   D+S N  SG +P  IG++  L  L+   N +S 
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 70  EFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVL 126
                              +P  + +   L   DL  NK  G +  +   L  L  +
Sbjct: 671 S------------------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 21  TGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLS-------SEFSC 73
            G +P     +      ++ N  +G+    I N    KE     N L             
Sbjct: 551 NGTIP---AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 74  SLKRLFLVSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132
           S +    ++   +      + +N   + + D+ +N  SG +     ++  L +L +   N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL-GHN 666

Query: 133 FFN-RILFLLRNLIQLIILHLSQNSFRGRI 161
             +  I   + +L  L IL LS N   GRI
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 88  KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI--LFLLRNLI 145
            V  S+ +   L+   L  +  +G + +  K   SL  L +++ +    +  L  L +  
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 146 QLIILHLSQNSFRGRIKLDFELS 168
            L  L++S N+     K+   L 
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS 68
           +G +P   G+LR L   DLS N   G +P ++  L  L E+D   N LS
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.9 bits (185), Expect = 9e-17
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS----SEFS--C 73
            G +P     L  L    ++  N SG +P  +  +  L  LDF +N LS       S   
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQWY-DLVFNKFSGELLASTKNLKSLEVLAINKCN 132
           +L  +          +P S  +F++L     +  N+ +G++  +  NL +L  + +++  
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 133 FFNRILFLLRNLIQLIILHLSQNSFRGRI 161
                  L  +      +HL++NS    +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
            Y+ +   + +G +P     +++L   D S N  SG LP SI +L  L  + F  N++S 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 70  E-------FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKS 122
                   FS     + +       K+P +  N   L + DL  N   G+      + K+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 123 LEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161
            + + + K N     L  +     L  L L  N   G +
Sbjct: 223 TQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKE-LDFLFNKLSSE-----FSC 73
           +G LP    +L +L       N  SG +P S G+   L   +    N+L+ +      + 
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133
           +L  + L              +    Q   L  N  + +L       K+L  L +     
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256

Query: 134 FNRILFLLRNLIQLIILHLSQNSFRGRI 161
           +  +   L  L  L  L++S N+  G I
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.9 bits (159), Expect = 3e-13
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 27/158 (17%)

Query: 11  TYVRLQAKHYTGELPFLS--GNLRSLKE-DLSKNNS-SGELPTSIGNLFPLKELDFLFNK 66
             + L   +     P  S   NL  L    +   N+  G +P +I  L  L  L      
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 67  LSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVL 126
           +S                    +P  ++    L   D  +N  SG L  S  +L +L  +
Sbjct: 113 VSGA------------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 127 AINKCNFFNRI---LFLLRNLIQLIILHLSQNSFRGRI 161
             +       I         L     + +S+N   G+I
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFT--SMTISRNRLTGKI 190

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 21  TGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE-----FSCSL 75
           TG++P    NL     DLS+N   G+     G+    +++    N L+ +      S +L
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 76  KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAI--NKC 131
             L L +   +  +P  +     L   ++ FN   GE +    NL+  +V A   NKC
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKC 303

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 17/126 (13%)

Query: 37  DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNF 96
           D       G L  +    + +  LD     L   +                 +P S+ N 
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY----------------PIPSSLANL 75

Query: 97  ARLQWYDLV-FNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155
             L +  +   N   G +  +   L  L  L I   N    I   L  +  L+ L  S N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 156 SFRGRI 161
           +  G +
Sbjct: 136 ALSGTL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 19  HYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCS--- 74
            + G          SLK  DLS N     + ++   L  L+ LDF  + L      S   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 75  ----LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAIN 129
               L  L +   +         N  + L+   +  N F    L      L++L  L ++
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 130 KCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
           +C           +L  L +L++S N+F       ++
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS------EFSCSLKRLFLV 81
            +   L+  DLS+         +  +L  L  L    N + S          SL++L  V
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 82  SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNRILFL 140
             N        I +   L+  ++  N      L     NL +LE L ++     +     
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 141 LRNLIQL----IILHLSQNSFRGRIKLDFELSK 169
           LR L Q+    + L LS N         F+  +
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 26  FLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC--------SLKR 77
           F +  L+SLK  L+  ++ G    S  +L  L+ LD   N LS +  C        SLK 
Sbjct: 319 FPTLKLKSLKR-LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 78  LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNR 136
           L L        +  +     +L+  D   +        S   +L++L  L I+  +    
Sbjct: 378 LDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 137 ILFLLRNLIQLIILHLSQNSFRGRIKLDF 165
              +   L  L +L ++ NSF+     D 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-------CSLKRLFL 80
            +LR+L   D+S  ++          L  L+ L    N     F         +L  L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
             C   +  P + N+ + LQ  ++  N F        K L SL+VL  +  +        
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 141 LRNLI-QLIILHLSQNSFRG 159
           L++    L  L+L+QN F  
Sbjct: 538 LQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC------SLKRLFLV 81
            +L  L    L+ N        +   L  L++L  +   L+S  +       +LK L + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 82  SCNFWE-KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAIN---KCNFFNRI 137
                  K+P   +N   L+  DL  NK         + L  + +L ++     N  N I
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 138 LFLLRNLIQLIILHLSQNSFRGRI 161
                  I+L  L L  N     +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 12/147 (8%)

Query: 30  NLRSLKEDLSKNN-SSGELPTSIGNLFPLKELDFLFNKLSS----EFSCSLKRLFLVSCN 84
           NL   +  L+  +    ++      L  +     +   +       ++   + L LV+C 
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 85  FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAI--NKCNFFNRILFLLR 142
           F                  L F    G    S  +L SLE L +  N  +F         
Sbjct: 316 F-----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 143 NLIQLIILHLSQNSFRGRIKLDFELSK 169
               L  L LS N           L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%)

Query: 27  LSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFW 86
           L  + ++L  DLS N        S  +   L+ LD    ++ +                 
Sbjct: 26  LPFSTKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---------------- 67

Query: 87  EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ 146
                +  + + L    L  N      L +   L SL+ L   + N  +   F + +L  
Sbjct: 68  --EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 147 LIILHLSQNSFRG 159
           L  L+++ N  + 
Sbjct: 126 LKELNVAHNLIQS 138

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 12/129 (9%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWE 87
            +L  L+E  +       ELP  + +     E   L          +L+ L L       
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGL---------VNLQSLRL-EWTGIR 196

Query: 88  KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL 147
            +P SI N   L+   +  +  S  L  +  +L  LE L +  C        +      L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 148 IILHLSQNS 156
             L L   S
Sbjct: 256 KRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 18/152 (11%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNL--FPLKELDFLFNKLSS---EFSC--SL 75
              +   N  + + +     +       + +        L+     L     +      L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 76  KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135
           + + +       ++P ++  FA L+   L  N     L AS  +L  L  L+I  C    
Sbjct: 107 QHMTI-DAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 136 RI---------LFLLRNLIQLIILHLSQNSFR 158
            +             + L+ L  L L     R
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 23  ELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF----LFNKLSSEFSC--SL 75
            LP    NL++LK   +  N+    L  +I +L  L+ELD             F     L
Sbjct: 197 SLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 76  KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135
           KRL L  C+    +P  I+   +L+  DL        L +    L +  ++ +       
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 136 RILFLLRNL 144
                    
Sbjct: 316 LDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 25/148 (16%)

Query: 28  SGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS---EFSC--SLKRLFLVS 82
                +L  +L  +    + P     L  L+ +      L            L+ L L  
Sbjct: 80  QPGRVAL--ELR-SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136

Query: 83  CNFWEKVPHSINNFARLQWYDLVFNKFSGEL---------LASTKNLKSLEVLAINKCNF 133
                 +P SI +  RL+   +       EL             + L +L+ L +     
Sbjct: 137 NPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE---- 191

Query: 134 FNRILFL---LRNLIQLIILHLSQNSFR 158
           +  I  L   + NL  L  L +  +   
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 10/134 (7%), Positives = 37/134 (27%), Gaps = 6/134 (4%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF-LFNKLSSEFSCSLKRLFLVSCNFW 86
            +    +      + +       +         D   ++    + + +  ++   +    
Sbjct: 9   HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 87  EKVPHSINNFAR--LQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNL 144
           +     + +  +      +L       +       L  L+ + I+       +   ++  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID-AAGLMELPDTMQQF 126

Query: 145 IQLIILHLSQNSFR 158
             L  L L++N  R
Sbjct: 127 AGLETLTLARNPLR 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC--SLKRLFLV 81
                L   D+  N  S   P     L  LK L+   N+LS      F+   +L  L L+
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 82  SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF--FNRILF 139
           S +  +   +       L   DL  N  S   L +   L++L+ L ++            
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 140 LLRNLIQLIILHLSQNSFRGRIKLDF 165
            +     L  L LS N  +      F
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 12/160 (7%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC------ 73
                F    L+ L+  ++  N+  G        L  LK L    +  S           
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 74  ----SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAI 128
                L  L L      +    + +    L+  DL  N+   EL     + L+++  + +
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 129 NKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELS 168
           +   +          +  L  L L + + +          
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 8/149 (5%)

Query: 27  LSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC--SLKRLFL 80
           L  N+  L  +L+ N        +      L  LD  FN +S            LK L L
Sbjct: 23  LPTNITVL--NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
                 +    +      L    L+ N             K+L  L ++     +  L  
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 141 LRNLIQLIILHLSQNSFRGRIKLDFELSK 169
              L  L  L LS N  +     + ++  
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC--------SLKRLF 79
             L ++ E  LS N        S   +  L+ L      L +  S         +L  L 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 80  LVSCNFWEKVPHSINNFARLQWYDLVFNKFS--------GELLASTKNLKSLEVLAINKC 131
           L + N        +    +L+  DL  N  +        G  +   K L  L +L +   
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 132 NFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
            F    + + ++L +L I+ L  N+        F 
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 18/151 (11%)

Query: 23  ELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFP--LKELDFLFNKLSS----EFSC-- 73
           E   L     S++   LS +  S    T+   L    L  LD  +N L+      F+   
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 74  SLKRLFLVSCNFWEKVPHSINNFARLQ---------WYDLVFNKFSGELLASTKNLKSLE 124
            L+  FL   N      HS++    ++            +           S + LK LE
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQN 155
            L +   +       +   LI L  L LS +
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFL 80
              P     LR+L   DLS NN +      +  L  L+ LD   N L+           L
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR----------L 519

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
                     + +   + L   +L  N F    +   K+L  L+++ +   N       +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 141 LRNLIQLIILHLSQNSFRGRIKLDFE 166
             N + L  L+L +N      K  F 
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFG 605

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 12/158 (7%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC-- 73
           +           +L E  L  N+              L  LD   N LSS          
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 74  SLKRLFLVSCNFWEKVPHSINNFA--RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC 131
           +L+ L L +          ++ FA   L+  +L  N+           +  L  L +N  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 132 NFFNRI---LFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
                +   L L      +  L LS +         F 
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 21/160 (13%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFP---LKELDFLFNKLSSE------ 70
               P     +  L    L+       L   +        ++ L    ++LS+       
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 71  --FSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVL-- 126
                +L  L L   N       S     +L+++ L +N        S   L ++  L  
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 127 -------AINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159
                  +I+  +      F  + L  L  L++  N   G
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 12/149 (8%)

Query: 25  PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---------CS 74
                   SLK+ +LS N      P     +  L  L     +L    +          S
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 75  LKRLFLVSCNFWEKVPHSINN--FARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132
           ++ L L +         +     +  L   DL +N  +     S   L  LE   +   N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 133 FFNRILFLLRNLIQLIILHLSQNSFRGRI 161
             +     L  L  +  L+L ++  +  I
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 16/159 (10%), Positives = 48/159 (30%), Gaps = 13/159 (8%)

Query: 19  HYTGELPFLSGNLRSLK---EDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS---EFS 72
           HY                  + ++ +     +  S        ++  L N ++       
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM 203

Query: 73  --CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130
               L++ ++ +  F  +           +     + +          NLK L  + +  
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK 169
           C    ++   L+ L ++ +++++ N      +L  +   
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/155 (12%), Positives = 51/155 (32%), Gaps = 18/155 (11%)

Query: 21  TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS------EFSC 73
           T  +      ++ L   +   N   G+LP + G+   L  L+  +N+++        F+ 
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 74  SLKRLFLVSCNFWEKVPH--SINNFARLQWYDLVFNKFSG-------ELLASTKNLKSLE 124
            ++ L        + +P+     + + +   D  +N+           L  +     ++ 
Sbjct: 378 QVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159
            + ++          L      L  ++L  N    
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 22  GELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLFNKLSSEFSC-----S 74
            +    +     ++   +  NN  +  + TS+  +  L  L+ L+N+L  +         
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

Query: 75  LKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINK-- 130
           L  L L       ++P +      +++      NK      +   K++  +  +  +   
Sbjct: 355 LASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 131 -----CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
                   F+ +       I +  ++LS N      K  F 
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 18/132 (13%)

Query: 28  SGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWE 87
           +G +  L   L    +SG +P +IG L  L+ L    +                      
Sbjct: 80  NGRVTGL--SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG------------ 125

Query: 88  KVPHSINNFARLQWYDLVFNKFSGELLASTKNLK--SLEVLAINKCNFFNRILFLLRNLI 145
             P  I+     +    +   +    +          L    IN       I    R  +
Sbjct: 126 --PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 146 QLIILHLSQNSF 157
           +   +    N+ 
Sbjct: 184 KDTQIGQLSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 22/174 (12%), Positives = 54/174 (31%), Gaps = 20/174 (11%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN--------SSGELPTSIGNLFPLKELD 61
           T V +       +LP     L  ++  +++ N            +          ++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 62  FLFNKLSS-----EFSC--SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL 114
             +N L +            L  L  +     E    +  +  +L   +L +N+ +    
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPA 370

Query: 115 ASTKNLKSLEVLAINKCNFFNRI--LFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
                 + +E L+    N    I  +F  +++  +  +  S N        +F+
Sbjct: 371 NFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 25/160 (15%)

Query: 21  TGELPFLSGNLRSLKE-DLSKN-------NSSGELPTSIGNLFPLKELDFLFNKLSS--- 69
           +     L      L   +L  N       NS  +   +  N + L  +D  FNKL+    
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 70  EFSC----SLKRLFLVSCNFWEKVPHSINNFARLQW------YDLVFNKFSGELLASTKN 119
           +F       L  + L   +F  K P    N + L+        D   N+   E       
Sbjct: 506 DFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 120 LKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159
             SL  L I   +       +  N   + +L +  N    
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 17/131 (12%)

Query: 26  FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCN 84
           F +  L  L   DLS N+ S   PT   N   LK                          
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------------RDAQGNR 553

Query: 85  FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNL 144
              + P  I     L    +  N        + K   ++ VL I      +  L  +   
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPY 610

Query: 145 IQLIILHLSQN 155
           I+  +  L  +
Sbjct: 611 IEAGMYMLFYD 621

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCS------ 74
           G   +      SL+  DLS N +   +  +   L  L+ LDF  + L      S      
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 75  -LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCN 132
            L  L +   N              L    +  N F    L++   N  +L  L ++KC 
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 133 FFNRILFLLRNLIQLIILHLSQNSFRG 159
                  +   L +L +L++S N+   
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 34/145 (23%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 26  FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLV--- 81
           F + +L  LK   L+ N   G +      L  L  LD   N LS    CS   L      
Sbjct: 322 FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 82  ----SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNR 136
               S N    +  +      LQ  D   +        S   +L+ L  L I+  N    
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 137 ILFLLRNLIQLIILHLSQNSFRGRI 161
              +   L  L  L ++ NSF+   
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 11/135 (8%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSCSLKRLFLVSCNF 85
           ++   +  L+  N   +       L  +  +      +            + L ++ C  
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319

Query: 86  WEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAI--NKCNFFNRILFLLRN 143
            +       +   L+   L  NK S  +      L SL  L +  N  +F     +    
Sbjct: 320 KQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 144 LIQLIILHLSQNSFR 158
              L  L LS N   
Sbjct: 375 TNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC--SLKRLFLV 81
            N   L+  DLS+         +   L  L  L    N + S     FS   SL+ L  V
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 82  SCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNF----FNR 136
                      I     L+  ++  N     +L A   NL +L  + ++         N 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 137 ILFLLRNLIQLIILHLSQNSFR 158
           + FL  N    + L +S N   
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 8/138 (5%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC-------SLKRLFL 80
            +L  L   D+S  N+  +       L  L  L    N               +L  L L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
             C   +      +   RLQ  ++  N       +    L SL  L  +          L
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 141 LRNLIQLIILHLSQNSFR 158
                 L   +L+ NS  
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 16/136 (11%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVS 82
            LP L   LR+L  ++S N  +  LP     L  L         L +  S  L +L++  
Sbjct: 75  SLPALPPELRTL--EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-GLCKLWI-F 129

Query: 83  CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLR 142
            N    +P        LQ   +  N+ +  L A    L  L           N++  L  
Sbjct: 130 GNQLTSLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLWAY-------NNQLTSLPM 178

Query: 143 NLIQLIILHLSQNSFR 158
               L  L +S N   
Sbjct: 179 LPSGLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFL 80
            LP L   L+ L   +S N  +  LPT       L +L    N+L+S       LK L +
Sbjct: 175 SLPMLPSGLQEL--SVSDNQLA-SLPTLPSE---LYKLWAYNNRLTSLPALPSGLKELIV 228

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
            S N    +P   +    L+   +  N+ +  L      L SL V       + N++  L
Sbjct: 229 -SGNRLTSLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSLSV-------YRNQLTRL 276

Query: 141 ---LRNLIQLIILHLSQNSFR 158
              L +L     ++L  N   
Sbjct: 277 PESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFL 80
            LP L   L+ L   +S  N    LP     L   KEL    N+L+S       L  L +
Sbjct: 215 SLPALPSGLKEL--IVS-GNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSGLLSLSV 268

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
              N   ++P S+ + +     +L  N  S   L + + + S    +     F       
Sbjct: 269 -YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 141 LRNLIQLIIL 150
            R    L + 
Sbjct: 328 PRETRALHLA 337

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 22/162 (13%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 13  VRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--- 69
           +R+  K    +          L++ +++N     +           ++  L N+++    
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 70  EFS--CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
                  L+ ++  +  F        N     +  +  + K       S  NLK L  + 
Sbjct: 443 AIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK 169
           +  C    ++   L +L +L  L+++ N      +L  + ++
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 28/171 (16%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSG---------ELPTSIGNLFPLKEL 60
           T V L       +LP    +L  L+  +++ N              L         ++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 61  DFLFNKLSS-----EFS--CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG-- 111
              +N L              L  L  V      +   +     +L    L +N+     
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 112 -ELLASTKNLKSLEVLAINKCNFFNRI--LFLLRNLIQLIILHLSQNSFRG 159
            +  A T  ++ L        N    I  +F  +++  +  +  S N    
Sbjct: 612 EDFCAFTDQVEGLGF----SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 13/152 (8%)

Query: 28  SGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFLVSCNF 85
           +G +  L   L+   + G +P +IG L  LK L F  +  +         +    +S   
Sbjct: 322 NGRVTGL--SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 86  WEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC------NFFNRILF 139
             ++              L  +    + +     +K ++  +          N  NRI F
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 140 L---LRNLIQLIILHLSQNSFRGRIKLDFELS 168
           +   ++ L +L I++ + + F           
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 19/145 (13%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKV 89
           N  ++   LS N              P+  +    N ++S           +  N  +  
Sbjct: 674 NASTV--TLSYNEIQKFPTELFATGSPISTIILSNNLMTS-----------IPENSLKPK 720

Query: 90  PHSINNFARLQWYDLVFNKFSG---ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ 146
             +  N   L   DL FNK +    +  A+   L  L  + ++  N F+       N  Q
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRAT--TLPYLSNMDVSY-NCFSSFPTQPLNSSQ 777

Query: 147 LIILHLSQNSFRGRIKLDFELSKEF 171
           L    +         ++  +     
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 17/143 (11%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS------EFSCSLKRLFLV 81
             +  L   D   N     L  + G    L +L   +N++         F+  ++ L   
Sbjct: 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 82  SCNFWEKVPH--SINNFARLQWYDLVFNKFSGE-----LLASTKNLKSLEVLAINKCNFF 134
                + +P+  +  +   +   D  +NK   E              +   + ++     
Sbjct: 628 HNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 135 NRILFLLRNLIQLIILHLSQNSF 157
                L      +  + LS N  
Sbjct: 687 KFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 25/156 (16%)

Query: 27  LSGNLRSLKE-DLSKNNSSGELP--TSIGNLFPLKELDFLFNKLSSE-----------FS 72
                  ++    S N     +P   +  +++ +  +DF +NK+ SE             
Sbjct: 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 73  CSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS-------GELLASTKNLKSLEV 125
            +   + L      +         + +    L  N  +            + KN   L  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 126 LAINKCNFFNRIL--FLLRNLIQLIILHLSQNSFRG 159
           + +   N    +   F    L  L  + +S N F  
Sbjct: 733 IDLRF-NKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 9/153 (5%)

Query: 23  ELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS---EFSC--SLK 76
              F      S++  +L K+        +      L+ELD     LS          +LK
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLK 304

Query: 77  RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAI--NKCNF 133
           +L L +  F      S +NF  L    +  N    EL     +NL++L  L +  +    
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 134 FNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166
            +     LRNL  L  L+LS N         F+
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 26  FLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--------EFSCSLKR 77
           F S   +SL    ++N            +  L    F                   S++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 78  LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI 137
           + L    F+    ++ + F+ LQ  DL     S EL +    L +L+ L ++   F N  
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 138 LFLLRNLIQLIILHLSQNSFRGRIKLDF 165
                N   L  L +  N+ R  +    
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 22  GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCS------ 74
                   NL  L+  +LS N        +      L+ LD  F +L  + + S      
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 75  -LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG---ELLASTKNLKSLEVLAINK 130
            LK L L             +    LQ  +L  N F     +   S + L  LE+L ++ 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 131 CNFFNRILFLLRNLIQLIILHLSQNSFRG 159
           C+  +       +L  +  + LS N    
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 29  GNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFSC--------SLKRL 78
            N  SL    +  N    EL T  + NL  L+ELD   + + +   C         L+ L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 79  FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNRI 137
            L           +     +L+  DL F +   +   S  +NL  L+VL ++        
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 138 LFLLRNLIQLIILHLSQNSFRGRIKL 163
             L   L  L  L+L  N F      
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC--SLKRLFLV 81
             L +L   DL++         +  +   L  L    N L        S   +LK LF +
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 82  SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLL 141
                      ++N   L+   L  N  S   L      + L+VL              +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 142 RNL--IQLIILHLSQNSFRG 159
            +L     + L+L+ N   G
Sbjct: 174 SSLQQATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 13/161 (8%)

Query: 18  KHYTGELPFLSGNLRSLKE-DLSKNN--SSGELPTSIGNLFPLKELDFLFNKLSS----- 69
                       NL +L+E DLS ++  +S      + NL  L+ L+  +N+  S     
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 70  -EFSCSLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
            +    L+ L L       K   S   N   L+  +L  +            L +L+ L 
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 128 INKCNFFNRILFL---LRNLIQLIILHLSQNSFRGRIKLDF 165
           +   +F    +     L+ L +L IL LS        +  F
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 8/146 (5%)

Query: 27  LSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSC--SLKRLFL 80
           L  +   L  + S N       T+   L  L  LD    ++       F     L  L L
Sbjct: 31  LPNSTECL--EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
            +         +++    L+    +    S        N K+LE L +   +  +  L  
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 141 LRNLIQLIILHLSQNSFRGRIKLDFE 166
                +L +L    N+     K D  
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMS 174

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 12/147 (8%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC--------SLKRLFLV 81
              +L  +L+  N    +     +    + L+F   +               SL      
Sbjct: 178 QATNLSLNLN-GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 82  SCNFWEKVPHSINNFAR--LQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF 139
             +  +  P          ++  +L  + F      +      L+ L +      + +  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPS 295

Query: 140 LLRNLIQLIILHLSQNSFRGRIKLDFE 166
            L  L  L  L LS N F    ++   
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISAS 322

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 20/128 (15%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFLVSCNFWE 87
            +  L  ++++N     LP    +L   + LD   N+LS+  E   SLK L +   N   
Sbjct: 81  QITVL--EITQNALI-SLPELPASL---EYLDACDNRLSTLPELPASLKHLDV-DNNQLT 133

Query: 88  KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL 147
            +P        L++ +   N+ +  L     +L+ L V         N++ FL      L
Sbjct: 134 MLPELPAL---LEYINADNNQLT-MLPELPTSLEVLSVR-------NNQLTFLPELPESL 182

Query: 148 IILHLSQN 155
             L +S N
Sbjct: 183 EALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFLVSCNFWE 87
               L   L++ N S  LP ++     +  L+   N L S  E   SL+ L     N   
Sbjct: 60  QFSEL--QLNRLNLS-SLPDNLPPQ--ITVLEITQNALISLPELPASLEYLDA-CDNRLS 113

Query: 88  KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL 147
            +P    +   L   D+  N+ +  L      L+ +           N++  L      L
Sbjct: 114 TLPELPASLKHL---DVDNNQLT-MLPELPALLEYINA-------DNNQLTMLPELPTSL 162

Query: 148 IILHLSQNSFR 158
            +L +  N   
Sbjct: 163 EVLSVRNNQLT 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 49  TSIGNLFPLKELDFLFNKLS--SEFSC--SLKRLFLVSCNFWEKVPHSINNFARLQWYDL 104
           T I     +K+L       +  +  S   +L+RL ++  +       +++    L   D+
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 105 VFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155
             +     +L     L  +  + ++       I+ L + L +L  L++  +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 30  NLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSCSLKRLFLVSCNF 85
             ++    L   +S+  +  +   +  L  +      ++     E++ ++K L + + + 
Sbjct: 21  TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78

Query: 86  WEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLI 145
                + I+  + L+   ++    + + + +   L SL +L I+     + IL  +  L 
Sbjct: 79  --TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 146 QLIILHLSQNS 156
           ++  + LS N 
Sbjct: 137 KVNSIDLSYNG 147

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 30  NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS-EFSCSLKRLFLVSCNFWE 87
            L  +   DL KN+ +     +   L  L+ LD   N L++  F  S+  +FL S N   
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL-SGNKLV 394

Query: 88  KVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNF-FNRILFLLRNLI 145
            +P             L  N+    ++L     +  L++L +N+  F             
Sbjct: 395 TLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 146 QLIILHLSQNSFRGRIKLDFELS 168
            L  L L +N  +   + +    
Sbjct: 452 SLEQLFLGENMLQLAWETELCWD 474

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 11/148 (7%)

Query: 30  NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-------CSLKRLFLV 81
            L + +   LS N       +S   L  L+ L+                   +L+ L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 82  SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST--KNLKSLEVLAINKCNFFN-RIL 138
           S   +   P +      L    L F   S  +L     +NLK+L  L ++K    +  + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 139 FLLRNLIQLIILHLSQNSFRGRIKLDFE 166
                L  L  +  S N      + + E
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 30  NLRSLKE-DLSKNNSSGEL-PTSIGNLFPLKELDFLFNKLSS------EFSCSLKRLFLV 81
            L  L+  +L    +   +   +  NL  L+ LD   +K+        +    L  L L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 82  SCNFWEKV--PHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRIL 138
            C   + V       N   L   DL  N+     L  S   L SL+ +  +    F    
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 139 FLLRNL--IQLIILHLSQNSFRGRIKLDFE 166
             L  L    L    L+ NS   R+ +D+ 
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 27  LSGN-LRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--------EFSCSLKR 77
           +SGN           N  S     S+     +    F F+ +              S++ 
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 78  LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI 137
           L L     +            L+  +L +NK +     +   L +L+VL ++        
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 138 LFLLRNLIQLIILHLSQNSFR 158
                 L ++  + L +N   
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIA 351

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 30  NLRSLKE-DLSKNNSSGELPTSI-GNLFPLKELDFLFNKLSS--EFSC--SLKRLFLVSC 83
            + SL+  DL +      +       L  L+ L+     L      +    L  L L   
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217

Query: 84  NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL--- 140
           +     P S      LQ   ++ ++       +  NL+SL  + +      N +  L   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH----NNLTLLPHD 273

Query: 141 -LRNLIQLIILHLSQNSFR 158
               L  L  +HL  N + 
Sbjct: 274 LFTPLHHLERIHLHHNPWN 292

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 25  PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC-------SLK 76
                   SLK  DLS N     + ++   L  L+ LDF  + L             +L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 77  RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFN 135
            L +   +         N  + L+   +  N F    L      L++L  L +++C    
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 136 RILFLLRNLIQLIILHLSQNSFR 158
                  +L  L +L++S N+F 
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFF 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS--SEFSC--SLKRLFLVSC 83
            +L SL       N  +    T + N+  L  L    NK++  S  +    L  L +   
Sbjct: 196 ASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI-GT 252

Query: 84  NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRN 143
           N    +  ++ +  +L+  ++  N+ S   ++   NL  L  L +N     N  + ++  
Sbjct: 253 NQISDIN-AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 144 LIQLIILHLSQN 155
           L  L  L LSQN
Sbjct: 310 LTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC-----SLKRLFLVS 82
            NL +L+E  L+++N S    + + NL  +  L+   N   S+ S       L  L +  
Sbjct: 107 QNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

Query: 83  CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-- 140
                K    I N   L    L +N+     ++   +L SL           N+I  +  
Sbjct: 165 SKV--KDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV----NQITDITP 216

Query: 141 LRNLIQLIILHLSQNSFRG 159
           + N+ +L  L +  N    
Sbjct: 217 VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 29  GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS--SEFSC--SLKRLFLVSC 83
            NL  +   +L  N++     + + N+  L  L    +K+   +  +    L  L L   
Sbjct: 129 ANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN 187

Query: 84  NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI--LFLL 141
               +    + +   L ++    N+ +   +    N+  L  L I      N+I  L  L
Sbjct: 188 QI--EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN----NKITDLSPL 239

Query: 142 RNLIQLIILHLSQN 155
            NL QL  L +  N
Sbjct: 240 ANLSQLTWLEIGTN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 30  NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFSCSLKRLFLVSCN 84
            L    +  L K N +  +     +L  +  L      + S    E+  +L ++   S N
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF-SNN 78

Query: 85  FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNL 144
               +   + N  +L    +  N+ +   +    NL +L  L +      +  +  L+NL
Sbjct: 79  QLTDITP-LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNL 133

Query: 145 IQLIILHLSQNSFRG 159
             L  L LS N+   
Sbjct: 134 TNLNRLELSSNTISD 148

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 25  PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCS-------LK 76
                   SLK  DLS N     + ++   L  L+ LDF  + L      S       L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 77  RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFN 135
            L +   +         N  + L+   +  N F    L      L++L  L ++      
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS----QC 480

Query: 136 RILFL----LRNLIQLIILHLSQNSFR 158
           ++  L      +L  L +L+++ N  +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLK 507

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 18/137 (13%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFSCSLKRLFL 80
           +LP L  +L S+      N         + NL  L  +    N L +  +   SL+ L +
Sbjct: 209 KLPDLPLSLESI--VAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
              N+   +P    +   L   + +F+  S        NL  L           N I  L
Sbjct: 265 -RDNYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNAS-------SNEIRSL 312

Query: 141 LRNLIQLIILHLSQNSF 157
                 L  L++S N  
Sbjct: 313 CDLPPSLEELNVSNNKL 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 30  NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS----EFS--CSLKRLFLVS 82
            L +L + D+S+N     L     +L+ LK L+   N L       FS   SL++L L  
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 83  CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLR 142
           CN       ++++   L    L     +     S K L  L+VL I+   + + +     
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 143 NLIQLIILHLSQNSFR 158
             + L  L ++  +  
Sbjct: 222 YGLNLTSLSITHCNLT 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.68
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.87

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1e-25  Score=182.49  Aligned_cols=86  Identities=23%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      +|++++|++++.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+.++++|++|++++|.
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cccccC
Q 040410          157 FRGRIK  162 (171)
Q Consensus       157 ~~~~~p  162 (171)
                      +.|.+|
T Consensus       716 l~g~iP  721 (768)
T 3rgz_A          716 LSGPIP  721 (768)
T ss_dssp             EEEECC
T ss_pred             ccccCC
Confidence            444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.2e-25  Score=165.93  Aligned_cols=164  Identities=19%  Similarity=0.187  Sum_probs=105.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEcc-------------------
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFL-------------------   63 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~-------------------   63 (171)
                      ++++++|++|++++|.++ .+|..++.+++|++ ++++|.+. .+|+.+..+++|++|+++                   
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            444555555555555555 34555555555555 55555554 445445555555555554                   


Q ss_pred             --------------CCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           64 --------------FNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        64 --------------~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                                    +|.++ .+|     + +|++|++++|.+.+ +|..++.+++|+.|++++|.+.+.+|..++.+++|
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence                          44444 233     4 56666666666663 55566677777777777777766777777777777


Q ss_pred             ceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      +.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus       256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            777777777777777777777888888888887777788877777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.3e-25  Score=164.83  Aligned_cols=159  Identities=24%  Similarity=0.270  Sum_probs=73.8

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c--cc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C--SL   75 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~--~L   75 (171)
                      +.++++|++|++++|.+++.+|..+..+++|++ ++++|.+.+.+|..+..+++|++|++++|.+++.+|     +  .+
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            344455555555555554444444555555555 555555444444445555555555555554443333     1  33


Q ss_pred             ceEecccccccccChhhh-----------------------hcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410           76 KRLFLVSCNFWEKVPHSI-----------------------NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN  132 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~-----------------------~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  132 (171)
                      ++|++++|.+.+..|..+                       ..+++|+.|++++|.+.+..|. +..+++|++|++++|.
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred             cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence            444444444443333333                       3334444444444444322222 3344444444444444


Q ss_pred             cchhhhHHhhccccCceEecccCccccccCc
Q 040410          133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKL  163 (171)
Q Consensus       133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~  163 (171)
                      +.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus       256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            4444455555555555555555555544444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.7e-25  Score=164.04  Aligned_cols=161  Identities=19%  Similarity=0.228  Sum_probs=128.8

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L   78 (171)
                      ..+.++.|+|++|.++. +|..++.+++|++ ++++|.+. .+|..+..+++|++|++++|.+. .+|     + +|++|
T Consensus        79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            35789999999999984 7888999999999 99999998 89999999999999999999998 555     5 89999


Q ss_pred             ecccccccccChhhhhc---------CcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCce
Q 040410           79 FLVSCNFWEKVPHSINN---------FARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLII  149 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  149 (171)
                      ++++|...+.+|..++.         +++|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            99998877777766554         777888888877777 677777777777777777777763 5556777777777


Q ss_pred             EecccCccccccCcccccccCC
Q 040410          150 LHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       150 L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      |++++|.+.+.+|..+..+++|
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCC
T ss_pred             EECcCCcchhhhHHHhcCCCCC
Confidence            7777777766667666665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.3e-25  Score=163.41  Aligned_cols=155  Identities=21%  Similarity=0.226  Sum_probs=119.6

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCC-CCcEEEccCCcCCC-----------
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLF-PLKELDFLFNKLSS-----------   69 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~-----------   69 (171)
                      .+.++++|++|++++|.+++..|..+..+++|++ ++++|.+.+.+|..+..++ +|++|++++|.+.+           
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L  199 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL  199 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred             HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcc
Confidence            3566777777777777777666666777777777 7777776656666666665 66666666665543           


Q ss_pred             ------------ccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccC
Q 040410           70 ------------EFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC  131 (171)
Q Consensus        70 ------------~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  131 (171)
                                  ..|     + +|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence                        233     4 677778888877755544 788899999999999999899999999999999999999


Q ss_pred             ccchhhhHHhhccccCceEecccCc-ccc
Q 040410          132 NFFNRILFLLRNLIQLIILHLSQNS-FRG  159 (171)
Q Consensus       132 ~~~~~~~~~~~~~~~L~~L~l~~n~-~~~  159 (171)
                      .+.+.+|.. ..+++|+.+++++|+ +.+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             cccccCCCC-ccccccChHHhcCCCCccC
Confidence            999888875 889999999999998 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=7.9e-25  Score=177.32  Aligned_cols=168  Identities=27%  Similarity=0.318  Sum_probs=110.8

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      +..+++|++|++++|.+++.+|..+..+++|++ ++++|.+.+.+|..++.+++|++|++++|.+.+.+|     + +|+
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence            344555555566655555555555566666666 666666655566666666666666666666655555     4 566


Q ss_pred             eEecccccccccChhhhh--------------------------------------------------------------
Q 040410           77 RLFLVSCNFWEKVPHSIN--------------------------------------------------------------   94 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~--------------------------------------------------------------   94 (171)
                      +|++++|.+.+.+|..++                                                              
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            666666666555554332                                                              


Q ss_pred             --------cCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccc
Q 040410           95 --------NFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus        95 --------~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~  166 (171)
                              .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.||+++|.+.|.+|..+.
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                    234566777777777777777777777777777777777777777777777788888888888777777777


Q ss_pred             cccCC
Q 040410          167 LSKEF  171 (171)
Q Consensus       167 ~l~~L  171 (171)
                      .++.|
T Consensus       702 ~l~~L  706 (768)
T 3rgz_A          702 ALTML  706 (768)
T ss_dssp             GCCCC
T ss_pred             CCCCC
Confidence            76654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.1e-23  Score=152.41  Aligned_cols=166  Identities=18%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      +..+++|++|++++|.+++..+..+..+++|++ ++++|. +....|..+..+++|++|++++|.+.+..+     + +|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            455666666666666666555556666666666 666665 443334556666666666666666654433     4 56


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            66666666666444445566666666666666665333334566666666666666666555555666666666666666


Q ss_pred             ccccccCccccccc
Q 040410          156 SFRGRIKLDFELSK  169 (171)
Q Consensus       156 ~~~~~~p~~~~~l~  169 (171)
                      .+.+..+..+..++
T Consensus       212 ~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          212 NLSALPTEALAPLR  225 (285)
T ss_dssp             CCSCCCHHHHTTCT
T ss_pred             cCCcCCHHHcccCc
Confidence            66543333344443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.4e-22  Score=145.89  Aligned_cols=159  Identities=18%  Similarity=0.109  Sum_probs=126.5

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S   74 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~   74 (171)
                      +.+..+++|++|++++|.+++  ...+..+++|++ ++++|.+++..+..+..+++|++|++++|.+.+..+     + +
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            456778888999999888876  347788888999 999998885555557888899999999988876544     5 7


Q ss_pred             cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      |++|++++|.+++..+..++.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            89999999988866666678888999999999988855556678888999999999988876666678888888988888


Q ss_pred             CccccccC
Q 040410          155 NSFRGRIK  162 (171)
Q Consensus       155 n~~~~~~p  162 (171)
                      |.+.+..|
T Consensus       215 N~~~~~~~  222 (272)
T 3rfs_A          215 NPWDCTCP  222 (272)
T ss_dssp             SCBCCCTT
T ss_pred             CCccccCc
Confidence            87765433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.2e-22  Score=146.95  Aligned_cols=165  Identities=21%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCc-CCCccc-----c-ccceE
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFS-----C-SLKRL   78 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-----~-~L~~L   78 (171)
                      .+++++|++++|.+++..+..+..+++|++ ++++|.+.+..|..+..+++|++|++++|. +....+     + +|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            568999999999999877778999999999 999999986668889999999999999997 665434     6 89999


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999999777888999999999999999998555567899999999999999998655556899999999999999999


Q ss_pred             cccCcccccccCC
Q 040410          159 GRIKLDFELSKEF  171 (171)
Q Consensus       159 ~~~p~~~~~l~~L  171 (171)
                      +..|..+..+++|
T Consensus       191 ~~~~~~~~~l~~L  203 (285)
T 1ozn_A          191 HVHPHAFRDLGRL  203 (285)
T ss_dssp             EECTTTTTTCTTC
T ss_pred             ccCHhHccCcccc
Confidence            8778888877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.8e-22  Score=143.39  Aligned_cols=162  Identities=19%  Similarity=0.163  Sum_probs=106.6

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      +++++|++++|.++...+..+..+++|++ ++++|.++ .+|+ .+..+++|++|++++|.+.+..+     + +|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            35777777777777655556777777777 77777776 3443 34667777777777777664333     4 677777


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            77777775555566777777777777777764333446677777777777777765444456667777777777777764


Q ss_pred             ccCcccccccC
Q 040410          160 RIKLDFELSKE  170 (171)
Q Consensus       160 ~~p~~~~~l~~  170 (171)
                      ..+..+..+++
T Consensus       196 ~~~~~~~~l~~  206 (270)
T 2o6q_A          196 VPEGAFDSLEK  206 (270)
T ss_dssp             CCTTTTTTCTT
T ss_pred             CCHHHhccccC
Confidence            33334544443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.8e-23  Score=166.33  Aligned_cols=159  Identities=15%  Similarity=0.226  Sum_probs=92.7

Q ss_pred             cccCCCCcEEEeecccccCC-----------------CCCccC--Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEcc
Q 040410            4 QAKKKQHTYVRLQAKHYTGE-----------------LPFLSG--NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFL   63 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~-----------------~~~~~~--~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~   63 (171)
                      ++++++|++|+|++|.+++.                 +|..++  .+++|++ ++++|.+.+.+|+.+..+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            45555666666666665553                 555555  5666666 666665555556556666666666666


Q ss_pred             CCc-CCC-ccc-----------c-ccceEecccccccccChh--hhhcCcCCcEEEcccccccccccccccCCCCCceEe
Q 040410           64 FNK-LSS-EFS-----------C-SLKRLFLVSCNFWEKVPH--SINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA  127 (171)
Q Consensus        64 ~~~-~~~-~~~-----------~-~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~  127 (171)
                      +|. +++ .+|           + +|++|++++|+++ .+|.  .++.+++|+.|++++|.+.+.+| .++.+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            665 554 333           2 4556666666665 4555  55666666666666666655555 555556666666


Q ss_pred             cccCccchhhhHHhhcccc-CceEecccCccccccCcccc
Q 040410          128 INKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       128 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~  166 (171)
                      +++|.+. .+|..+..+++ |++|++++|.+. .+|..+.
T Consensus       360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred             CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence            6666655 45555666666 666666666665 4555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=4.5e-22  Score=141.61  Aligned_cols=153  Identities=17%  Similarity=0.112  Sum_probs=132.7

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      ++++.|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+     + +|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            57899999999999877888999999999 999999986666678899999999999999986554     5 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      ++|++.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999866666678899999999999999855455788999999999999999876666788999999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.4e-22  Score=144.62  Aligned_cols=161  Identities=17%  Similarity=0.081  Sum_probs=140.5

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S   74 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~   74 (171)
                      +.+..+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+     + +
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            45778999999999999999877777899999999 999999985555568899999999999999986554     5 8


Q ss_pred             cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      |++|++++|++++..+..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.       +++++.++++.
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~  231 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI  231 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence            99999999999976677788999999999999999976667789999999999999988754       45688899999


Q ss_pred             CccccccCccccccc
Q 040410          155 NSFRGRIKLDFELSK  169 (171)
Q Consensus       155 n~~~~~~p~~~~~l~  169 (171)
                      |.+.|.+|.+++.++
T Consensus       232 n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          232 NKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHTGGGBBCTTSCBC
T ss_pred             HhCCCcccCcccccC
Confidence            999999999887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=9.7e-23  Score=162.11  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=141.7

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCC-cCCccCCCC------CCCcEEEccCCcCCCccc----
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSG-ELPTSIGNL------FPLKELDFLFNKLSSEFS----   72 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~----   72 (171)
                      ++++|++|++++|.+.+.+|..++.+++|++ ++++|. +++ .+|..++.+      ++|++|++++|.++ .+|    
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            8999999999999999999999999999999 999998 887 788888776      99999999999988 443    


Q ss_pred             ---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCC-CceEecccCccchhhhHHhhccc--
Q 040410           73 ---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKS-LEVLAINKCNFFNRILFLLRNLI--  145 (171)
Q Consensus        73 ---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--  145 (171)
                         + +|++|++++|.+.+.+| .++.+++|+.|++++|.+. .+|..++.+++ |++|++++|.+. .+|..+...+  
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence               5 89999999999998888 8899999999999999998 88999999998 999999999998 7887776654  


Q ss_pred             cCceEecccCccccccCcccc
Q 040410          146 QLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       146 ~L~~L~l~~n~~~~~~p~~~~  166 (171)
                      +|++|++++|.+.+.+|..+.
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSC
T ss_pred             ccCEEECcCCcCCCcchhhhc
Confidence            899999999999988888777

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=1.6e-22  Score=147.58  Aligned_cols=161  Identities=22%  Similarity=0.223  Sum_probs=101.0

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L   78 (171)
                      +++|++|++++|.++. ++..+..+++|++ ++++|.+.+..+ ..+..+++|++|++++|.+.+..+     + +|++|
T Consensus        77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            3444444444444443 3444556666666 666666653222 356667777777777776654443     4 67777


Q ss_pred             ecccccccc-cChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           79 FLVSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        79 ~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      ++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            777777664 3556666777777777777777655566677777777777777777654444566677777777777777


Q ss_pred             ccccCcccccc
Q 040410          158 RGRIKLDFELS  168 (171)
Q Consensus       158 ~~~~p~~~~~l  168 (171)
                      .+..|..+..+
T Consensus       236 ~~~~~~~~~~~  246 (306)
T 2z66_A          236 MTSKKQELQHF  246 (306)
T ss_dssp             CBCSSSSCCCC
T ss_pred             cccCHHHHHhh
Confidence            76666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2e-21  Score=139.65  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=136.2

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      .+.++++|++|++++|.++...+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+.+..+     + +|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            4778999999999999999866666789999999 999999985444567899999999999999986654     6 89


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            99999999999655566889999999999999998655567889999999999999998655556888999999999999


Q ss_pred             ccccc
Q 040410          156 SFRGR  160 (171)
Q Consensus       156 ~~~~~  160 (171)
                      ++...
T Consensus       216 ~~~c~  220 (270)
T 2o6q_A          216 PWDCT  220 (270)
T ss_dssp             CBCCS
T ss_pred             CeeCC
Confidence            98643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=7e-22  Score=151.14  Aligned_cols=74  Identities=22%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             CcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410           96 FARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK  169 (171)
Q Consensus        96 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~  169 (171)
                      +++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            33444444444444433334444444444444444444433344444455555555555555444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=148.62  Aligned_cols=166  Identities=21%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---------
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---------   72 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------   72 (171)
                      .|.++++|++|+|++|.++...+..+..+++|++ ++++|.++...+..+..+++|++|++++|.+....+         
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            3455666666666666665544455556666666 666665553222345555556666655555442211         


Q ss_pred             ---------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410           73 ---------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK  130 (171)
Q Consensus        73 ---------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~  130 (171)
                                           + +|++|++++|++. .+| .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence                                 3 4555555555554 233 244555666666666666654456666666666666666


Q ss_pred             CccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      |.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence            6666555556666677777777777776544444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.8e-21  Score=148.86  Aligned_cols=97  Identities=19%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      +|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  379 (455)
T 3v47_A          300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD  379 (455)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence            56666666666665556666666777777777776665555666667777777777777665556666666777777777


Q ss_pred             cCccccccCcccccccC
Q 040410          154 QNSFRGRIKLDFELSKE  170 (171)
Q Consensus       154 ~n~~~~~~p~~~~~l~~  170 (171)
                      +|.+.+..+..+..+++
T Consensus       380 ~N~l~~~~~~~~~~l~~  396 (455)
T 3v47_A          380 TNQLKSVPDGIFDRLTS  396 (455)
T ss_dssp             SSCCSCCCTTTTTTCTT
T ss_pred             CCccccCCHhHhccCCc
Confidence            77666533334444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.3e-21  Score=140.96  Aligned_cols=125  Identities=19%  Similarity=0.120  Sum_probs=54.2

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      +++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+     + +|++|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            444455444444433334444444444 444444442222234444444444444444433222     2 444444444


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~  134 (171)
                      |.+.+..+..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            44443222234444444444444444432 13444444444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.4e-21  Score=148.48  Aligned_cols=166  Identities=20%  Similarity=0.108  Sum_probs=101.8

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---------
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---------   72 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------   72 (171)
                      .|.++++|++|+|++|.+++..+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+....+         
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence            4566777777777777777666667777777777 777777763333346667777777777776653221         


Q ss_pred             ---------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410           73 ---------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK  130 (171)
Q Consensus        73 ---------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~  130 (171)
                                           + +|++|++++|++.+ +| .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence                                 2 44445555554442 22 344555666666666666655556666666666666666


Q ss_pred             CccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence            6666555556666677777777777766544444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.9e-21  Score=148.00  Aligned_cols=162  Identities=17%  Similarity=0.104  Sum_probs=120.4

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|+|++|.+++..+..+..+++|+. ++++|.+.+..+..|.++++|++|++++|.++...+     + +|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57999999999999988889999999999 999999986666789999999999999999885544     6 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEccc-------------------------ccccccccccccCCCCCceEecccCccch
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVF-------------------------NKFSGELLASTKNLKSLEVLAINKCNFFN  135 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~-------------------------n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  135 (171)
                      ++|.+....+..+..+++|+.|++++                         |.+. .+| .+..+++|+.|++++|.+.+
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcc
Confidence            99998855444555555555555554                         4443 222 24455566666666666665


Q ss_pred             hhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          136 RILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       136 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      ..|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            556667777777777777777776556666655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=2.4e-22  Score=146.68  Aligned_cols=164  Identities=21%  Similarity=0.187  Sum_probs=101.7

Q ss_pred             cCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-cc
Q 040410            6 KKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SL   75 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L   75 (171)
                      ++++|++|++++|.++..  .+..+..+++|++ ++++|.+. .+|..+..+++|++|++++|.+.+..+      + +|
T Consensus        50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred             ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence            344444444444444321  1223333444444 44444443 344455666666666666666554321      4 67


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      ++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            777777777776666667777778888887777765 4667777778888888888877765566777778888888888


Q ss_pred             CccccccCcccccccC
Q 040410          155 NSFRGRIKLDFELSKE  170 (171)
Q Consensus       155 n~~~~~~p~~~~~l~~  170 (171)
                      |.+.+..+..+..+++
T Consensus       209 N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             SCCSBCCSGGGTTCTT
T ss_pred             CccCccChhhccCccc
Confidence            8877544445555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=2.5e-21  Score=152.89  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS-----C-SLKR   77 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~   77 (171)
                      .+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..++. +..+++|++|++++|.+.+..+     + +|++
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  453 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH  453 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence            3444444444444444333444444444444 44444443222222 4444444444444444433322     3 4444


Q ss_pred             Eeccccccccc---ChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           78 LFLVSCNFWEK---VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        78 L~l~~~~~~~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      |++++|.+.+.   .+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++| +|++++
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            44444444321   11234444445555555544443334444455555555555555544444444444445 555555


Q ss_pred             CccccccCcccc
Q 040410          155 NSFRGRIKLDFE  166 (171)
Q Consensus       155 n~~~~~~p~~~~  166 (171)
                      |.+.+..|..+.
T Consensus       533 N~l~~~~~~~~~  544 (606)
T 3t6q_A          533 NHISIILPSLLP  544 (606)
T ss_dssp             SCCCCCCGGGHH
T ss_pred             CcccccCHhhcc
Confidence            555443333333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=3.1e-22  Score=163.36  Aligned_cols=161  Identities=18%  Similarity=0.193  Sum_probs=119.5

Q ss_pred             ccccCCCCcEEEeecccccC-----------------CCCCccC--Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEc
Q 040410            3 DQAKKKQHTYVRLQAKHYTG-----------------ELPFLSG--NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF   62 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l   62 (171)
                      .++++++|++|+|++|.+++                 .+|..++  .+++|+. ++++|.+.+.+|..+..+++|++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            46677778888888877776                 2676766  7777888 88777777777777777888888888


Q ss_pred             cCCc-CCC-ccc------------c-ccceEecccccccccChh--hhhcCcCCcEEEcccccccccccccccCCCCCce
Q 040410           63 LFNK-LSS-EFS------------C-SLKRLFLVSCNFWEKVPH--SINNFARLQWYDLVFNKFSGELLASTKNLKSLEV  125 (171)
Q Consensus        63 ~~~~-~~~-~~~------------~-~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~  125 (171)
                      ++|+ +++ .+|            + +|++|++++|.+. .+|.  .++.+++|+.|++++|.+. .+| .++.+++|+.
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD  599 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence            8776 665 444            2 4777788888777 6766  7777778888888887777 677 6777778888


Q ss_pred             EecccCccchhhhHHhhcccc-CceEecccCccccccCcccccc
Q 040410          126 LAINKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFELS  168 (171)
Q Consensus       126 L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~~l  168 (171)
                      |++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..+
T Consensus       600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~  641 (876)
T 4ecn_A          600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK  641 (876)
T ss_dssp             EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred             EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence            888888777 67777777777 888888888877 567665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.2e-21  Score=134.37  Aligned_cols=156  Identities=18%  Similarity=0.101  Sum_probs=129.1

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      .+++++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+     + +|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            457999999999998866667889999999 999999984444457889999999999999885543     5 899999


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+       .++++++|+++.|.+.|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            99999986666668889999999999999985544567889999999999998764       34578889999999999


Q ss_pred             ccCccccccc
Q 040410          160 RIKLDFELSK  169 (171)
Q Consensus       160 ~~p~~~~~l~  169 (171)
                      .+|.+++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            9998888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=1.7e-21  Score=153.81  Aligned_cols=168  Identities=19%  Similarity=0.152  Sum_probs=113.3

Q ss_pred             cccCCCCcEEEeecccccCCC--CCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-
Q 040410            4 QAKKKQHTYVRLQAKHYTGEL--PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-   73 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-   73 (171)
                      +..+++|++|++++|.+++..  +..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+      + 
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            344555556666555555433  445566666666 666666654455566666777777777776654432      4 


Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEccccccccc---ccccccCCCCCceEecccCccchhhhHHhhccccCceE
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE---LLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIIL  150 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  150 (171)
                      +|++|++++|.+.+..+..++.+++|+.|++++|.+.+.   .+..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            677777777777766666777777788888877777642   22456777788888888888776667777888888888


Q ss_pred             ecccCccccccCcccccccCC
Q 040410          151 HLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       151 ~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      ++++|.+.+..|..+..++.|
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC
T ss_pred             ECCCCccCcCChhHhCccccc
Confidence            888888877777777766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=2.8e-21  Score=147.61  Aligned_cols=163  Identities=18%  Similarity=0.113  Sum_probs=113.7

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      ++++.|+|++|.++...+..+..+++|++ ++++|.+....+..|..+++|++|++++|.++...+     + +|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57899999999999888889999999999 999999985556779999999999999999985544     5 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCceEecc----------------------cCccchhh
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEVLAIN----------------------KCNFFNRI  137 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~----------------------~n~~~~~~  137 (171)
                      ++|.+....+..+..+++|+.|++++|...+.++. .+.++++|++|+++                      +|.+.+..
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence            99998865555666666666666666332223332 34445555555554                      44444433


Q ss_pred             hHHhhccccCceEecccCccccccCcccccccC
Q 040410          138 LFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       138 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      |..+..+++|++|++++|.+.+..+..|..+++
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            445555555555555555555444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=148.43  Aligned_cols=163  Identities=20%  Similarity=0.176  Sum_probs=123.9

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|+|++|.+++..+..+..+++|++ ++++|.+.+..|..|..+++|++|++++|.+....+     + +|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46788888888888766777888888888 888888876557778888888888888887764433     5 7888888


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            88888777777778888888888888887766667778888888888888887765555677788888888888877765


Q ss_pred             cCcccccccC
Q 040410          161 IKLDFELSKE  170 (171)
Q Consensus       161 ~p~~~~~l~~  170 (171)
                      .+..+..+++
T Consensus       192 ~~~~~~~l~~  201 (477)
T 2id5_A          192 RDYSFKRLYR  201 (477)
T ss_dssp             CTTCSCSCTT
T ss_pred             ChhhcccCcc
Confidence            5555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=6.1e-21  Score=135.75  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=136.5

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      .+.++++++++.++. +|..+.  +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..+     + +|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            467889999999886 565554  58889 999999986667679999999999999999987655     5 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999976677889999999999999999855455678999999999999999865555789999999999999999976


Q ss_pred             cCcccccccCC
Q 040410          161 IKLDFELSKEF  171 (171)
Q Consensus       161 ~p~~~~~l~~L  171 (171)
                      .+..+..+++|
T Consensus       171 ~~~~~~~l~~L  181 (251)
T 3m19_A          171 PHGAFDRLGKL  181 (251)
T ss_dssp             CTTTTTTCTTC
T ss_pred             CHHHHhCCCCC
Confidence            66667766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=1.1e-21  Score=154.90  Aligned_cols=162  Identities=17%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      ..+++|++|++++|.+++ +|..+..+++|+. ++++|.+.+..| ..+..+++|++|++++|.+.+..|     + +|+
T Consensus       373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  451 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN  451 (606)
T ss_dssp             HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence            344555555555555544 3445555666666 666666554333 345566666666666666554443     3 566


Q ss_pred             eEeccccccccc-ChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           77 RLFLVSCNFWEK-VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        77 ~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      +|++++|.+.+. .|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus       452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            666666666542 4555566666666666666666555555666666666666666666555556666666666666666


Q ss_pred             ccccccCcccccc
Q 040410          156 SFRGRIKLDFELS  168 (171)
Q Consensus       156 ~~~~~~p~~~~~l  168 (171)
                      .+. .+|..+..+
T Consensus       532 ~l~-~~p~~~~~l  543 (606)
T 3vq2_A          532 RIE-TSKGILQHF  543 (606)
T ss_dssp             CCC-CEESCGGGS
T ss_pred             cCc-ccCHhHhhh
Confidence            665 345544444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=1e-20  Score=139.41  Aligned_cols=70  Identities=24%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             cEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          100 QWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       100 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      +.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++
T Consensus       195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  264 (330)
T 1xku_A          195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  264 (330)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence            33333334443333445555555666666666555444445555666666666666665 45555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=7.3e-22  Score=155.93  Aligned_cols=167  Identities=19%  Similarity=0.167  Sum_probs=144.4

Q ss_pred             cccCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-
Q 040410            4 QAKKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-   73 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-   73 (171)
                      +..+++|++|++++|.+++.  .+..+..+++|++ ++++|.+. .+|..+..+++|++|++++|.+.+..+      + 
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            45677888888888887764  3667788889999 99999887 577889999999999999998876544      5 


Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEccccccccc-ccccccCCCCCceEecccCccchhhhHHhhccccCceEec
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE-LLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHL  152 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  152 (171)
                      +|++|++++|.+.+..|..++.+++|+.|++++|.+.+. +|..++.+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            899999999999988888999999999999999999873 7888999999999999999999877888999999999999


Q ss_pred             ccCccccccCcccccccCC
Q 040410          153 SQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       153 ~~n~~~~~~p~~~~~l~~L  171 (171)
                      ++|.+.+..|..+..+++|
T Consensus       505 s~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTC
T ss_pred             CCCcCCCcCHHHccCCCcC
Confidence            9999998778888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=4.8e-21  Score=139.12  Aligned_cols=157  Identities=22%  Similarity=0.115  Sum_probs=91.0

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      ++++.|++++|.+++..+..+..+++|+. ++++|.++ .++. ...+++|++|++++|.+. .+|     + ++++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            34555555555555544555566666666 66666655 3333 255666666666666655 222     3 5666666


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      ++|++++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            666666544455666666666666666666433344556666666666666666433334556666666666666665 4


Q ss_pred             cCcccccc
Q 040410          161 IKLDFELS  168 (171)
Q Consensus       161 ~p~~~~~l  168 (171)
                      +|..+..+
T Consensus       187 ip~~~~~~  194 (290)
T 1p9a_G          187 IPKGFFGS  194 (290)
T ss_dssp             CCTTTTTT
T ss_pred             cChhhccc
Confidence            55554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.4e-21  Score=158.16  Aligned_cols=153  Identities=18%  Similarity=0.138  Sum_probs=131.3

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCC-cCCccCCC-------CCCCcEEEccCCcCCCccc---
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSG-ELPTSIGN-------LFPLKELDFLFNKLSSEFS---   72 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~---   72 (171)
                      ++++|++|+|++|.+.+.+|..++.+++|++ ++++|. +++ .+|..++.       +++|++|++++|.+. .+|   
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            8999999999999998889999999999999 999998 776 67765554       459999999999987 443   


Q ss_pred             ----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCC-CceEecccCccchhhhHHhhcccc
Q 040410           73 ----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKS-LEVLAINKCNFFNRILFLLRNLIQ  146 (171)
Q Consensus        73 ----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~  146 (171)
                          + +|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|..++.+++ |+.|++++|.+. .+|..+..++.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence                5 8999999999998 777 8889999999999999998 88988999988 999999999988 77877766654


Q ss_pred             --CceEecccCccccccCc
Q 040410          147 --LIILHLSQNSFRGRIKL  163 (171)
Q Consensus       147 --L~~L~l~~n~~~~~~p~  163 (171)
                        |+.|++++|.+.+.+|.
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSS
T ss_pred             CCCCEEECcCCcCCCcccc
Confidence              99999999999876553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=7.6e-21  Score=138.04  Aligned_cols=165  Identities=18%  Similarity=0.100  Sum_probs=139.5

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR   77 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~   77 (171)
                      .+.+++++++++++++.++. +|..+.  +.++. ++++|.+.+..+..+..+++|++|++++|.+++..+   + +|++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence            46788999999999999987 555543  68889 999999986667789999999999999999986544   6 9999


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      |++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            999999998 6788888999999999999999965557899999999999999999866566678999999999999999


Q ss_pred             ccccCcccccccCC
Q 040410          158 RGRIKLDFELSKEF  171 (171)
Q Consensus       158 ~~~~p~~~~~l~~L  171 (171)
                      ....+..+..+++|
T Consensus       161 ~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          161 TELPAGLLNGLENL  174 (290)
T ss_dssp             SCCCTTTTTTCTTC
T ss_pred             CccCHHHhcCcCCC
Confidence            85444445656543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=4.8e-21  Score=147.50  Aligned_cols=160  Identities=18%  Similarity=0.124  Sum_probs=113.1

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      .|.++++|++|+|++|.+++..|..+..+++|++ ++++|.+....+..+..+++|++|++++|.+.+..+     + +|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            4667888888888888888777778888888888 888888874333346788888888888888775544     5 77


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            88888888777666667777777777777777776444455667777777777777666544445556666666665555


Q ss_pred             ccccccC
Q 040410          156 SFRGRIK  162 (171)
Q Consensus       156 ~~~~~~p  162 (171)
                      ...+.+|
T Consensus       211 ~~~~~~~  217 (477)
T 2id5_A          211 PYLDTMT  217 (477)
T ss_dssp             TTCCEEC
T ss_pred             ccccccC
Confidence            4443333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=1.2e-20  Score=135.77  Aligned_cols=168  Identities=17%  Similarity=0.050  Sum_probs=140.8

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      .+.++++|++|++++|.++...+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+     + +|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            5678999999999999999877778999999999 999999986666789999999999999999876544     6 89


Q ss_pred             ceEeccccccccc-ChhhhhcCcCCcEEEcccccccccccccccCCCCCc----eEecccCccchhhhHHhhccccCceE
Q 040410           76 KRLFLVSCNFWEK-VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE----VLAINKCNFFNRILFLLRNLIQLIIL  150 (171)
Q Consensus        76 ~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L  150 (171)
                      ++|++++|.+.+. +|..++.+++|++|++++|.+.+..+..+..+.+++    .+++++|.+.+. +.......+|++|
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L  205 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKEL  205 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEE
Confidence            9999999999863 588999999999999999999866667787777777    899999999854 4444445589999


Q ss_pred             ecccCccccccCcccccccCC
Q 040410          151 HLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       151 ~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      ++++|.+.+..+..+..+++|
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSC
T ss_pred             ECCCCceeecCHhHhcccccc
Confidence            999999986545556666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1.5e-20  Score=148.64  Aligned_cols=65  Identities=22%  Similarity=0.139  Sum_probs=29.6

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCC
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSS   69 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~   69 (171)
                      |..+++|++|+|++|.+++..|..++.+++|++ ++++|.+. .+|+. |..+++|++|++++|.+.+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence            344444555555555544444444444444544 44444444 22222 3444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=1e-20  Score=139.52  Aligned_cols=41  Identities=17%  Similarity=0.031  Sum_probs=20.4

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccC
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSS   44 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~   44 (171)
                      +.++++|++|++++|.+++..|..++.+++|++ ++++|.+.
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  115 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV  115 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC
Confidence            344555555555555554444444555555555 55554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=2.7e-21  Score=141.70  Aligned_cols=159  Identities=18%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCcc-------
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF-------   71 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------   71 (171)
                      ..+++|++|++++|.+++. |..++.+     ++|++ ++++|.+.+..|..+..+++|++|++++|++.+..       
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            3444455555555554443 4334433     45555 55555554333345556666666666666544321       


Q ss_pred             -c-c-ccceEecccccccc--cCh-hhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhcc
Q 040410           72 -S-C-SLKRLFLVSCNFWE--KVP-HSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNL  144 (171)
Q Consensus        72 -~-~-~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  144 (171)
                       . + +|++|++++|++.+  ..+ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             1 3 56666666666552  111 223455666666666666654443 33445566666666666665 4554443  


Q ss_pred             ccCceEecccCccccccCccccccc
Q 040410          145 IQLIILHLSQNSFRGRIKLDFELSK  169 (171)
Q Consensus       145 ~~L~~L~l~~n~~~~~~p~~~~~l~  169 (171)
                      ++|++|++++|.+.+. |. +..++
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~  296 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELP  296 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCC
Confidence            5666666666666643 43 44443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.1e-20  Score=135.21  Aligned_cols=157  Identities=21%  Similarity=0.247  Sum_probs=106.8

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|++|++++|.+++..+  +..+++|++ ++++|.+. .++ .+..+++|++|++++|.+.+..+   + +|+
T Consensus        57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  132 (308)
T 1h6u_A           57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ  132 (308)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred             hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence            456677788888888887776333  777788888 88888776 343 57777788888888877765433   5 777


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      +|++++|.+.+. +. ++.+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.+ ++. +..+++|++|++++|.
T Consensus       133 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          133 VLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCc
Confidence            777777777643 32 6677777777777777763 343 6677777777777777764 332 6677777777777777


Q ss_pred             cccccCcccccccC
Q 040410          157 FRGRIKLDFELSKE  170 (171)
Q Consensus       157 ~~~~~p~~~~~l~~  170 (171)
                      +.+..  .+..+++
T Consensus       207 l~~~~--~l~~l~~  218 (308)
T 1h6u_A          207 ISDVS--PLANTSN  218 (308)
T ss_dssp             CCBCG--GGTTCTT
T ss_pred             cCccc--cccCCCC
Confidence            76432  2444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=2.3e-20  Score=140.40  Aligned_cols=64  Identities=22%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCC
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLS   68 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   68 (171)
                      +..+++|++|++++|.+++..+..++.+++|++ ++++|.+. .+|.. +..+++|++|++++|.+.
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~  154 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE  154 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC
Confidence            344455555555555554444444455555555 55555444 33332 344445555555544444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=2.8e-20  Score=139.92  Aligned_cols=107  Identities=17%  Similarity=0.068  Sum_probs=90.6

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      +..+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+....+     + +|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            567889999999999998877778999999999 999999986556678999999999999999874433     5 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEccccccc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS  110 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~  110 (171)
                      +|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            9999999998766777888888888888888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.9e-21  Score=143.57  Aligned_cols=155  Identities=17%  Similarity=0.086  Sum_probs=104.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc------c-c
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS------C-S   74 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------~-~   74 (171)
                      +.++++|++|++++|.+++..+..++.+++|++ ++++|.++ .+|.. +..+++|++|++++|.+....+      + +
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            556667777777777776655566677777777 77777766 34443 6667777777777776653211      4 6


Q ss_pred             cceEeccccc-ccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhH-HhhccccCceEec
Q 040410           75 LKRLFLVSCN-FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF-LLRNLIQLIILHL  152 (171)
Q Consensus        75 L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l  152 (171)
                      |++|++++|. +....+..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.. +|. .+..+++|++|++
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEEC
Confidence            7777777763 444445566777777777777777776667777777777777777777753 343 3445777888888


Q ss_pred             ccCccccc
Q 040410          153 SQNSFRGR  160 (171)
Q Consensus       153 ~~n~~~~~  160 (171)
                      ++|.+.+.
T Consensus       230 ~~n~l~~~  237 (353)
T 2z80_A          230 RDTDLDTF  237 (353)
T ss_dssp             ESCBCTTC
T ss_pred             CCCccccc
Confidence            88887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=3e-20  Score=146.86  Aligned_cols=108  Identities=17%  Similarity=0.063  Sum_probs=94.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      +..+++|++|+|++|.+++..+..++.+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+     + +|+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            456889999999999999877779999999999 999999986666678999999999999999885443     5 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG  111 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~  111 (171)
                      +|++++|.+.+..|..++.+++|+.|++++|.+.+
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            99999999998778889999999999999888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=5.7e-20  Score=135.44  Aligned_cols=163  Identities=20%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEeccc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVS   82 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~   82 (171)
                      +++++|++++|.+++..+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+. .+|   . +|++|++++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~  130 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE  130 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCC
Confidence            45677777777777655556777777777 77777776544666777777777777777766 333   3 566666666


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccc--cccccccCC---------------------CCCceEecccCccchhhhH
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSG--ELLASTKNL---------------------KSLEVLAINKCNFFNRILF  139 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l---------------------~~L~~L~l~~n~~~~~~~~  139 (171)
                      |.+.+..+..+..+++|+.|++++|.+..  ..+..+..+                     ++|+.|++++|.+.+..+.
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence            66665444555555556666555555431  223334444                     4555666666666655566


Q ss_pred             HhhccccCceEecccCccccccCcccccccCC
Q 040410          140 LLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       140 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      .+..+++|++|++++|.+.+..+..+..+++|
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            77888888888888888876656566666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=2.3e-20  Score=128.26  Aligned_cols=147  Identities=19%  Similarity=0.240  Sum_probs=125.1

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKR   77 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~   77 (171)
                      ..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. . ++.+..+++|++|++++|.+++..+     + +|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            457789999999999985 45 6889999999 99999765 3 4478899999999999999986444     6 8999


Q ss_pred             EecccccccccChhhhhcCcCCcEEEccccc-ccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNK-FSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      |++++|.+++..+..++.+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            9999999998788899999999999999998 55 566 68899999999999999985 44 68899999999999999


Q ss_pred             ccc
Q 040410          157 FRG  159 (171)
Q Consensus       157 ~~~  159 (171)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=9.8e-21  Score=140.75  Aligned_cols=166  Identities=16%  Similarity=0.138  Sum_probs=130.1

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc--cCCCCCCCcEEEccCCc-CCCccc-----c
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT--SIGNLFPLKELDFLFNK-LSSEFS-----C   73 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~-----~   73 (171)
                      .+.++++|++|++++|.+++..+..+..+++|++ ++++|.+. .+|.  .+..+++|++|++++|. +....+     +
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            4678899999999999998754445889999999 99999988 5665  68899999999999985 443323     5


Q ss_pred             -ccceEecccccccccChhhhhcCcCCcEEEccccccccccccc-ccCCCCCceEecccCccch----------------
Q 040410           74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS-TKNLKSLEVLAINKCNFFN----------------  135 (171)
Q Consensus        74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~----------------  135 (171)
                       ++++|++++|.+.+..|..++.+++|++|++++|.+. .+|.. +..+++|+.|++++|.+.+                
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence             8999999999998877888888889999999888876 45543 3456788888888877654                


Q ss_pred             ---------------hhhHHhhccccCceEecccCccccccCcc-cccccCC
Q 040410          136 ---------------RILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSKEF  171 (171)
Q Consensus       136 ---------------~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~~L  171 (171)
                                     .+|..+..+++|++|++++|.+. .+|.. +..+++|
T Consensus       253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L  303 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL  303 (353)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence                           25666778888888888888887 46665 3565543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=7e-21  Score=134.42  Aligned_cols=164  Identities=15%  Similarity=0.055  Sum_probs=106.0

Q ss_pred             cccCCCCcEEEeeccc-ccCCCCCccCCcchhhh-hcCC-CccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-cc
Q 040410            4 QAKKKQHTYVRLQAKH-YTGELPFLSGNLRSLKE-DLSK-NNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SL   75 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~-~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L   75 (171)
                      +..+++|++|++++|. ++...+..+..+++|++ ++++ |.++...+..+..+++|++|++++|.+.+ +|    + ++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L  129 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYST  129 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccc
Confidence            4566677777777775 55544446666777777 7776 66663333456667777777777776654 33    3 55


Q ss_pred             c---eEecccc-cccccChhhhhcCcCCc-EEEcccccccccccccccCCCCCceEecccCc-cchhhhHHhhcc-ccCc
Q 040410           76 K---RLFLVSC-NFWEKVPHSINNFARLQ-WYDLVFNKFSGELLASTKNLKSLEVLAINKCN-FFNRILFLLRNL-IQLI  148 (171)
Q Consensus        76 ~---~L~l~~~-~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~  148 (171)
                      +   +|++++| .+.+..+..+..+++|+ .+++++|.+. .+|......++|+.|++++|. +.+..+..+..+ ++|+
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence            5   7777777 66654455677777788 8888887777 566544444778888888884 764444567777 7888


Q ss_pred             eEecccCccccccCccccccc
Q 040410          149 ILHLSQNSFRGRIKLDFELSK  169 (171)
Q Consensus       149 ~L~l~~n~~~~~~p~~~~~l~  169 (171)
                      +|++++|.+....+..+..++
T Consensus       209 ~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          209 LLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             EEECTTCCCCCCCCTTCTTCS
T ss_pred             EEECCCCccccCChhHhccCc
Confidence            888888888743233344443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=3.5e-21  Score=150.83  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L   78 (171)
                      +++|++|++++|.+++..+ .+..+++|++ ++++|.+.+..+ ..+..+++|++|++++|.+.+..+     + +|++|
T Consensus       372 ~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            3344444444444333211 2444444444 444444442222 234445555555555554443333     3 45555


Q ss_pred             eccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           79 FLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        79 ~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      ++++|.+. +..|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            55555544 23444444555555555555555444444555555555555555555443334444555555555555555


Q ss_pred             cccc
Q 040410          158 RGRI  161 (171)
Q Consensus       158 ~~~~  161 (171)
                      .+..
T Consensus       531 ~~~~  534 (570)
T 2z63_A          531 DCSC  534 (570)
T ss_dssp             CCCT
T ss_pred             cCCC
Confidence            4433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=5.9e-20  Score=146.84  Aligned_cols=167  Identities=18%  Similarity=0.043  Sum_probs=94.4

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK   76 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~   76 (171)
                      +.++++|++|++++|.++...+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+     + +|+
T Consensus        69 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred             HhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence            445666666666666666544445666666666 666666653333456666666666666666554433     3 566


Q ss_pred             eEecccccccccChhhhh--cCcCCcEEEccccccc--------------------------------------------
Q 040410           77 RLFLVSCNFWEKVPHSIN--NFARLQWYDLVFNKFS--------------------------------------------  110 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~n~~~--------------------------------------------  110 (171)
                      +|++++|.+++..+..++  .+++|+.|++++|.+.                                            
T Consensus       149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~  228 (680)
T 1ziw_A          149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS  228 (680)
T ss_dssp             EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred             EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence            666666555544444332  2244555555544443                                            


Q ss_pred             -------ccccccccCCCC--CceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          111 -------GELLASTKNLKS--LEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       111 -------~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                             +..|..+..++.  |+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++
T Consensus       229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (680)
T 1ziw_A          229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN  297 (680)
T ss_dssp             CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred             ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence                   333334444433  667777776666555556666777777777777766655555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=4.2e-21  Score=140.66  Aligned_cols=159  Identities=16%  Similarity=0.036  Sum_probs=132.6

Q ss_pred             cCCCCcEEEeecccccCCCCCcc--CCcchhhh-hcCCCccCCcCCccCCCC-----CCCcEEEccCCcCCCccc-----
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLS--GNLRSLKE-DLSKNNSSGELPTSIGNL-----FPLKELDFLFNKLSSEFS-----   72 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~-~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~-----   72 (171)
                      ++++|++|++++|.+++..|..+  ..+++|++ ++++|.+.+. |..+..+     ++|++|++++|.+.+..+     
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            68999999999999998888876  89999999 9999999854 7777776     899999999999987665     


Q ss_pred             c-ccceEeccccccccc--Chhhh--hcCcCCcEEEcccccccc--ccc-ccccCCCCCceEecccCccchhhh-HHhhc
Q 040410           73 C-SLKRLFLVSCNFWEK--VPHSI--NNFARLQWYDLVFNKFSG--ELL-ASTKNLKSLEVLAINKCNFFNRIL-FLLRN  143 (171)
Q Consensus        73 ~-~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~l~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~  143 (171)
                      + +|++|++++|++.+.  .+..+  +.+++|++|++++|.+.+  .++ ..+..+++|++|++++|.+.+..| ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            6 899999999998754  34445  788999999999999873  233 334577999999999999987654 44666


Q ss_pred             cccCceEecccCccccccCcccc
Q 040410          144 LIQLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       144 ~~~L~~L~l~~n~~~~~~p~~~~  166 (171)
                      +++|++|++++|.+. .+|..+.
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc
Confidence            899999999999998 6787664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=2.2e-20  Score=149.29  Aligned_cols=162  Identities=22%  Similarity=0.132  Sum_probs=139.8

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|++++|.+++..+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+     + +|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57999999999999877778999999999 999999987677788999999999999999875443     6 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhh--ccccCceEecccCccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLR--NLIQLIILHLSQNSFR  158 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~  158 (171)
                      ++|.+.+..+..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+..+.  .+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999876667899999999999999999877788899999999999999999876666554  4588999999999998


Q ss_pred             cccCccccccc
Q 040410          159 GRIKLDFELSK  169 (171)
Q Consensus       159 ~~~p~~~~~l~  169 (171)
                      +..|..+..++
T Consensus       185 ~~~~~~~~~l~  195 (680)
T 1ziw_A          185 EFSPGCFHAIG  195 (680)
T ss_dssp             CBCTTGGGGSS
T ss_pred             ccChhhhhhhh
Confidence            77777665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=4.2e-20  Score=136.27  Aligned_cols=162  Identities=19%  Similarity=0.069  Sum_probs=118.2

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEeccc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVS   82 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~   82 (171)
                      +++++|++++|.+++..+..+..+++|++ ++++|.+++..|..+..+++|++|++++|.+. .+|   . +|++|++++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~  132 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHD  132 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCC
Confidence            57999999999999877778999999999 99999998666888999999999999999988 444   3 788888888


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccc----------------------------------------------ccccc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSG----------------------------------------------ELLAS  116 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~----------------------------------------------~~~~~  116 (171)
                      |.+.+..+..+..+++|+.|++++|.+..                                              ..+..
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~  212 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED  212 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence            88875555567777777777777766531                                              12234


Q ss_pred             ccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          117 TKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       117 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      ++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence            445555666666666665444445666666677777776666 466666655543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=5.5e-20  Score=150.37  Aligned_cols=162  Identities=21%  Similarity=0.179  Sum_probs=129.8

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcC-CccCCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGEL-PTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKR   77 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~   77 (171)
                      ..+++++|+|++|.+++..+..+..+++|++ ++++|...+.+ |..|..+++|++|++++|.+.+..|     + +|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            3467899999999998877888999999999 99998655455 6678899999999999998886655     5 8999


Q ss_pred             EecccccccccChhh--hhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhcc--ccCceEec
Q 040410           78 LFLVSCNFWEKVPHS--INNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNL--IQLIILHL  152 (171)
Q Consensus        78 L~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l  152 (171)
                      |++++|.+.+..+..  ++.+++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999888766654  7888999999999998875544 578889999999999998887667777666  67888888


Q ss_pred             ccCccccccCccccc
Q 040410          153 SQNSFRGRIKLDFEL  167 (171)
Q Consensus       153 ~~n~~~~~~p~~~~~  167 (171)
                      +.|.+.+..|..++.
T Consensus       182 ~~n~l~~~~~~~~~~  196 (844)
T 3j0a_A          182 AANSLYSRVSVDWGK  196 (844)
T ss_dssp             CCSBSCCCCCCCCCS
T ss_pred             CCCccccccccchhh
Confidence            888777666655444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=7.5e-20  Score=149.59  Aligned_cols=84  Identities=21%  Similarity=0.090  Sum_probs=50.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc--CCCCCCCcEEEccCCcCCCccc------c-
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS--IGNLFPLKELDFLFNKLSSEFS------C-   73 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~------~-   73 (171)
                      |.++++|++|+|++|.+++..|..++.+++|++ ++++|.+.+..|..  +..+++|++|++++|.+.+..+      + 
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            555666666666666666655666666666666 66666665444443  5666666666666666554322      3 


Q ss_pred             ccceEecccccccc
Q 040410           74 SLKRLFLVSCNFWE   87 (171)
Q Consensus        74 ~L~~L~l~~~~~~~   87 (171)
                      +|++|++++|.+.+
T Consensus       149 ~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          149 SLKSIDFSSNQIFL  162 (844)
T ss_dssp             SCCEEEEESSCCCC
T ss_pred             CCCEEECCCCcCCe
Confidence            55666665555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=126.23  Aligned_cols=147  Identities=18%  Similarity=0.128  Sum_probs=120.9

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      ++++++++.++. +|..+.  ..+++ ++++|.+++..+ ..+..+++|++|++++|.+++..+     + +|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            588999998876 565443  34567 999999884434 347889999999999999876544     5 899999999


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      |.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999877777788999999999999999877678889999999999999999877688889999999999999988643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=142.47  Aligned_cols=159  Identities=21%  Similarity=0.117  Sum_probs=136.1

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|++++|.+++..+..+..+++|++ ++++|.+.+..+..|..+++|++|++++|.+.+..+     + +|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47899999999999877788999999999 999999886556678999999999999999876544     6 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccC----ceEecccC
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL----IILHLSQN  155 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n  155 (171)
                      ++|++.+..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..++.+++|    +++++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999985444468899999999999999875 578999999999999999999987667778888888    88999999


Q ss_pred             ccccccCcccc
Q 040410          156 SFRGRIKLDFE  166 (171)
Q Consensus       156 ~~~~~~p~~~~  166 (171)
                      .+.+..|..+.
T Consensus       188 ~l~~~~~~~~~  198 (570)
T 2z63_A          188 PMNFIQPGAFK  198 (570)
T ss_dssp             CCCEECTTTTT
T ss_pred             CceecCHHHhc
Confidence            98876555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2.1e-20  Score=144.59  Aligned_cols=157  Identities=14%  Similarity=0.053  Sum_probs=86.3

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCC------------------
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS------------------   68 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------   68 (171)
                      ++|++|+|++|.+++..|..++.+++|++ ++++|.+.+..|  +..+++|++|++++|.++                  
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            36677777777776655556666777777 777776653222  555555655555555443                  


Q ss_pred             ----------------------Cccc-----c-ccceEecccccccccChhhhh-cCcCCcEEEcccccccccccccccC
Q 040410           69 ----------------------SEFS-----C-SLKRLFLVSCNFWEKVPHSIN-NFARLQWYDLVFNKFSGELLASTKN  119 (171)
Q Consensus        69 ----------------------~~~~-----~-~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~  119 (171)
                                            +..|     + +|++|++++|.+++..|..+. .+++|+.|++++|.+.+. +. ...
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence                                  2222     2 344444444444443333332 344444444444444422 21 223


Q ss_pred             CCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          120 LKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       120 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      +++|+.|++++|.+++ +|..+..+++|++|++++|.+.+ +|..+..+++
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence            5566666666666664 44446677777777777777764 5666655544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2e-19  Score=130.62  Aligned_cols=147  Identities=22%  Similarity=0.225  Sum_probs=98.5

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR   77 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~   77 (171)
                      .+..+++|++|++++|.+++..+  ++.+++|+. ++++|.+. .++ .+..+++|++|++++|.+.+...   + +|++
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~  138 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLES  138 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCE
T ss_pred             hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCE
Confidence            45566777777777777766333  667777777 77777765 333 36777777777777777664322   4 6777


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      |++++|.+.+.  ..+..+++|+.|++++|.+.+. +. ++.+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence            77777777643  4566777777777777777643 33 6677777777777777764 44 367777777777777776


Q ss_pred             cc
Q 040410          158 RG  159 (171)
Q Consensus       158 ~~  159 (171)
                      ..
T Consensus       213 ~~  214 (291)
T 1h6t_A          213 LN  214 (291)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=2.1e-20  Score=146.05  Aligned_cols=154  Identities=16%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc-cc-----c-ccc
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE-FS-----C-SLK   76 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-----~-~L~   76 (171)
                      .++++|++|++++|.+++..|..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+. .|     + +|+
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            34444444444444444433344444444444 4444444422222244444444444444444321 11     3 444


Q ss_pred             eEecccccccccCh-hhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEeccc
Q 040410           77 RLFLVSCNFWEKVP-HSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLSQ  154 (171)
Q Consensus        77 ~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~  154 (171)
                      +|++++|...+.++ ..+..+++|++|++++|.+.+..|..++.+++|++|+++.|... .+|.. +..+++|++|++++
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~  205 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRD  205 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEES
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccC
Confidence            44444444222222 34444444555555555444444444555555555555555443 23332 24466777777777


Q ss_pred             Ccccc
Q 040410          155 NSFRG  159 (171)
Q Consensus       155 n~~~~  159 (171)
                      |.+.+
T Consensus       206 n~l~~  210 (549)
T 2z81_A          206 TNLAR  210 (549)
T ss_dssp             CBCTT
T ss_pred             Ccccc
Confidence            77764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=2.5e-19  Score=139.24  Aligned_cols=136  Identities=16%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC--ccc-----c-ccceEecccccccccChhh-hhcCcCC
Q 040410           30 NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFS-----C-SLKRLFLVSCNFWEKVPHS-INNFARL   99 (171)
Q Consensus        30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-----~-~L~~L~l~~~~~~~~~~~~-~~~l~~L   99 (171)
                      .+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+  .+|     + +|++|++++|.+.+.+|.. +..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4445555 555555554445555555555555555555543  222     3 4555555555555433332 4444555


Q ss_pred             cEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcc-ccccc
Q 040410          100 QWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSK  169 (171)
Q Consensus       100 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~  169 (171)
                      +.|++++|.+.+..|..+.  ++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  468 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT  468 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence            5555555555444444332  45555555555555 45554455555666666666555 34443 44333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=3.6e-19  Score=125.08  Aligned_cols=126  Identities=21%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEc
Q 040410           32 RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDL  104 (171)
Q Consensus        32 ~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l  104 (171)
                      ++|+. ++++|.+.+..|..+..+++|++|++++|.+....+     + +|++|++++|++.+..+..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            44444 555555443334444445555555555554432221     3 4455555555554333333445555555555


Q ss_pred             ccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410          105 VFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       105 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555554 44555555555555555555554332233445555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=8.2e-20  Score=141.94  Aligned_cols=152  Identities=18%  Similarity=0.175  Sum_probs=135.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCC--cCCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSG--ELPTSIGNLFPLKELDFLFNKLSSEFS------C-S   74 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~   74 (171)
                      ..+++|++|++++|.+++..|..++.+++|+. ++++|.+.+  .+|..+..+++|++|++++|.+.+.+|      + +
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            57889999999999999988999999999999 999999984  456678999999999999999987455      5 8


Q ss_pred             cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEecc
Q 040410           75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLS  153 (171)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~  153 (171)
                      +++|++++|.+++..+..+.  ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence            99999999999877776554  78999999999998 89998889999999999999998 56665 8899999999999


Q ss_pred             cCccccc
Q 040410          154 QNSFRGR  160 (171)
Q Consensus       154 ~n~~~~~  160 (171)
                      +|++.+.
T Consensus       477 ~N~~~c~  483 (520)
T 2z7x_B          477 TNPWDCS  483 (520)
T ss_dssp             SSCBCCC
T ss_pred             CCCCccc
Confidence            9999764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.2e-19  Score=125.40  Aligned_cols=145  Identities=21%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC   83 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~   83 (171)
                      +.++++++.++. +|..+.  +.+++ ++++|.+.+..+..+..+++|++|++++|.+++..|     + +|++|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            345555555554 333332  45555 666666653333355566666666666666654433     3 5666666666


Q ss_pred             cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      .+....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666433334556666666666666666554556666666666666666666544445666666666666666653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=1.9e-19  Score=142.18  Aligned_cols=152  Identities=21%  Similarity=0.113  Sum_probs=123.4

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|+|++|.++...+..|..+++|++ ++++|.+++..+..|.++++|++|++++|++++..+     + +|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999877778999999999 999999885445568899999999999999875443     6 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccCc----eEecccC
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI----ILHLSQN  155 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n  155 (171)
                      ++|++++..+..++.+++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..+..+..+++++    .++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9999986555678899999999999998864 4677888899999999999998876666666665543    5677777


Q ss_pred             cccc
Q 040410          156 SFRG  159 (171)
Q Consensus       156 ~~~~  159 (171)
                      .+..
T Consensus       212 ~l~~  215 (635)
T 4g8a_A          212 PMNF  215 (635)
T ss_dssp             CCCE
T ss_pred             cccc
Confidence            7764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=7.2e-19  Score=130.17  Aligned_cols=156  Identities=19%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEe
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLF   79 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~   79 (171)
                      ..+++|++|++++|.+++..+  +..+++|+. ++++|.+. ..+. +..+++|++|++++|.+.+..+   + ++++|+
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  249 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLE  249 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             ccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEE
Confidence            344455555555555443211  445555555 55555554 2222 6667778888888877765444   5 788888


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+.+ . ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       250 l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          250 IGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            88888774 3 457788888888888888874 3 457788889999999999887777888889999999999999886


Q ss_pred             ccCcccccccC
Q 040410          160 RIKLDFELSKE  170 (171)
Q Consensus       160 ~~p~~~~~l~~  170 (171)
                      ..|  +..+++
T Consensus       326 ~~~--~~~l~~  334 (347)
T 4fmz_A          326 IRP--LASLSK  334 (347)
T ss_dssp             CGG--GGGCTT
T ss_pred             ccC--hhhhhc
Confidence            544  555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=3.9e-20  Score=135.79  Aligned_cols=94  Identities=12%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             ccceEecccccccccChhhh-hcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEec
Q 040410           74 SLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHL  152 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  152 (171)
                      +|++|++++|.+.+..+..+ ..+++|++|++++|.+. .++. ...+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence            55566666666554444443 24556666666666655 2232 2246677777777777764 4555777888888888


Q ss_pred             ccCccccccCcccccccCC
Q 040410          153 SQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       153 ~~n~~~~~~p~~~~~l~~L  171 (171)
                      ++|.+. .+|..+..+++|
T Consensus       222 ~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          222 RNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             TTSCCC-EECTTCCCCTTC
T ss_pred             cCCccc-chhhHhhcCCCC
Confidence            888887 467766665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.2e-19  Score=140.40  Aligned_cols=134  Identities=19%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEE
Q 040410           32 RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYD  103 (171)
Q Consensus        32 ~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  103 (171)
                      ++|+. ++++|.+++..|..+..+++|++|++++|.+++..|      + +|++|++++|.+++. + ....+++|+.|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEE
Confidence            34455 555666655456678889999999999999987655      5 899999999999865 3 334689999999


Q ss_pred             cccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc-cccCccccccc
Q 040410          104 LVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR-GRIKLDFELSK  169 (171)
Q Consensus       104 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~p~~~~~l~  169 (171)
                      +++|.+. .+|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++..++
T Consensus       198 Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             CCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             CCCCCCC-CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence            9999999 466679999999999999999985 7888889999999999999997 55666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=3.6e-20  Score=135.53  Aligned_cols=150  Identities=16%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             cCCCCcEEEeecccccCCCC----CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc--c------c
Q 040410            6 KKKQHTYVRLQAKHYTGELP----FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE--F------S   72 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~------~   72 (171)
                      .+++|++|++++|.+++..+    ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|++.+.  .      .
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            34445555555555443222    12234555555 6666665544445566677777777777765431  1      1


Q ss_pred             -c-ccceEecccccccccChh----hhhcCcCCcEEEcccccccccccccccCC---CCCceEecccCccchhhhHHhhc
Q 040410           73 -C-SLKRLFLVSCNFWEKVPH----SINNFARLQWYDLVFNKFSGELLASTKNL---KSLEVLAINKCNFFNRILFLLRN  143 (171)
Q Consensus        73 -~-~L~~L~l~~~~~~~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~  143 (171)
                       + +|++|++++|+++. .+.    .++.+++|++|++++|.+.+..|..++.+   ++|++|++++|.+. .+|..+. 
T Consensus       195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-  271 (310)
T 4glp_A          195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-  271 (310)
T ss_dssp             SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred             cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence             4 67777777777752 222    24566778888888887776656666655   57888888888777 5665443 


Q ss_pred             cccCceEecccCcccc
Q 040410          144 LIQLIILHLSQNSFRG  159 (171)
Q Consensus       144 ~~~L~~L~l~~n~~~~  159 (171)
                       ++|++|++++|.+.+
T Consensus       272 -~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             -SCCSCEECCSCCCCS
T ss_pred             -CCCCEEECCCCcCCC
Confidence             677888888888775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=3.4e-19  Score=129.43  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=131.5

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L   78 (171)
                      +..+++|++|++++|.++..  +.+..+++|++ ++++|.+. .+++ +..+++|++|++++|.+.+...   + +|++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence            45678899999999999873  35888999999 99999998 4555 9999999999999999886433   6 89999


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++++|.+.+ + ..+..+++|+.|++++|.+.+ + ..++.+++|++|++++|.+.+.. . +..+++|++|++++|.+.
T Consensus       118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccch-h-hcCCCccCEEECCCCcCC
Confidence            999999985 3 468899999999999999984 3 67889999999999999998643 3 889999999999999998


Q ss_pred             cccCcccccccCC
Q 040410          159 GRIKLDFELSKEF  171 (171)
Q Consensus       159 ~~~p~~~~~l~~L  171 (171)
                      + ++ .+..+++|
T Consensus       192 ~-l~-~l~~l~~L  202 (291)
T 1h6t_A          192 D-LR-ALAGLKNL  202 (291)
T ss_dssp             B-CG-GGTTCTTC
T ss_pred             C-Ch-hhccCCCC
Confidence            5 44 36666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=1e-19  Score=142.07  Aligned_cols=151  Identities=21%  Similarity=0.058  Sum_probs=135.3

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      ++|++|++++|.+++..|..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+     + +|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            58999999999999877889999999999 999999986666789999999999999999987665     6 8999999


Q ss_pred             ccccccc-cChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           81 VSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        81 ~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++|.+.+ ..|..++.+++|++|++++|...+.+| ..++++++|++|++++|.+.+..|..++.+++|++|+++.|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9999985 356788999999999999998554666 68999999999999999999888999999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.7e-19  Score=127.34  Aligned_cols=161  Identities=14%  Similarity=0.034  Sum_probs=131.0

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCCcCCccCCCCCCCcEEEccC-CcCCCccc-----c-ccceE
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLF-NKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-----~-~L~~L   78 (171)
                      +++++|++++|.+++..+..+..+++|+. ++++|. ++...+..+..+++|++|++++ |.++...+     + +|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            47999999999999877778999999999 999997 7743344788999999999998 88875443     6 89999


Q ss_pred             ecccccccccChhhhhcCcCCc---EEEcccc-cccccccccccCCCCCc-eEecccCccchhhhHHhhccccCceEecc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQ---WYDLVFN-KFSGELLASTKNLKSLE-VLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~---~l~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      ++++|.+.+ +|. ++.+++|+   .|++++| .+.+-.+..+..+++|+ .|++++|.+. .+|......++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            999999985 665 88888888   9999999 88854445688999999 9999999998 566543344889999999


Q ss_pred             cCc-cccccCcccccc-cCC
Q 040410          154 QNS-FRGRIKLDFELS-KEF  171 (171)
Q Consensus       154 ~n~-~~~~~p~~~~~l-~~L  171 (171)
                      +|+ +....+..+..+ ++|
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCC
T ss_pred             CCCCcccCCHHHhhccccCC
Confidence            995 875445556665 543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=6.8e-19  Score=139.14  Aligned_cols=149  Identities=22%  Similarity=0.217  Sum_probs=124.4

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|+.|+|++|.+++..+  +..+++|+. ++++|.+. .++ .+..+++|+.|++++|.+.+..+   + +|+
T Consensus        59 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~  134 (605)
T 1m9s_A           59 QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLE  134 (605)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCS
T ss_pred             hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCCccccCCCccC
Confidence            467788999999999999887444  888999999 99999987 444 68899999999999999886433   6 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      .|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  ++.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.
T Consensus       135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred             EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence            999999999854  578889999999999999985544  8889999999999999885 44 58889999999999998


Q ss_pred             cccc
Q 040410          157 FRGR  160 (171)
Q Consensus       157 ~~~~  160 (171)
                      +.+.
T Consensus       209 l~~~  212 (605)
T 1m9s_A          209 CLNK  212 (605)
T ss_dssp             EECC
T ss_pred             CcCC
Confidence            8753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=1.5e-19  Score=141.77  Aligned_cols=152  Identities=18%  Similarity=0.213  Sum_probs=122.2

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCC--cCCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSG--ELPTSIGNLFPLKELDFLFNKLSSEFS------C-S   74 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~   74 (171)
                      ..+++|++|++++|.+++..|..++.+++|+. ++++|.+++  ..|..+..+++|++|++++|.+.+.+|      + +
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56788888999998888877888888888999 999888873  223567888899999999988876444      5 7


Q ss_pred             cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEecc
Q 040410           75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLS  153 (171)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~  153 (171)
                      +++|++++|.+++..+..+.  ++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|.. +..+++|++|+++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            88899998888766655443  68899999999887 78887778889999999999888 46665 7888889999999


Q ss_pred             cCccccc
Q 040410          154 QNSFRGR  160 (171)
Q Consensus       154 ~n~~~~~  160 (171)
                      +|++.+.
T Consensus       506 ~N~~~c~  512 (562)
T 3a79_B          506 DNPWDCT  512 (562)
T ss_dssp             SCCBCCC
T ss_pred             CCCcCCC
Confidence            9988754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.9e-19  Score=132.63  Aligned_cols=150  Identities=19%  Similarity=0.120  Sum_probs=118.7

Q ss_pred             CCCcEEEeecccccCCCCCccC-Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            8 KQHTYVRLQAKHYTGELPFLSG-NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      +.++.|+|++|.+++..+..+. .+++|+. ++++|.+....+..|..+++|++|++++|.+....+     + +|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578899999998886666676 8899999 999998885555668889999999999998875443     5 889999


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccc----cCCCCCceEecccCccchhhhHHhhcccc--CceEecc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST----KNLKSLEVLAINKCNFFNRILFLLRNLIQ--LIILHLS  153 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~  153 (171)
                      +++|.+.+..+..+..+++|+.|++++|.+. .+|..+    ..+++|+.|++++|.+....+..+..++.  ++.|+++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            9999998777788888899999999999888 455443    56888999999999988544456777766  4788888


Q ss_pred             cCccc
Q 040410          154 QNSFR  158 (171)
Q Consensus       154 ~n~~~  158 (171)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            88875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.8e-18  Score=119.67  Aligned_cols=149  Identities=19%  Similarity=0.082  Sum_probs=123.3

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC   83 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~   83 (171)
                      +.++.+++.++. +|..+  .+++++ ++++|.+.+..+..+..+++|++|++++|.+.+..+     + +|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            577888888776 44433  358899 999999985445557899999999999999985544     5 8999999999


Q ss_pred             cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccC
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK  162 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p  162 (171)
                      ++.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            9996666668899999999999999985555668899999999999999986555568889999999999999887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=2.8e-20  Score=137.18  Aligned_cols=152  Identities=18%  Similarity=0.144  Sum_probs=92.8

Q ss_pred             ccCCCCcEEEeecccccCC-CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCC-cCCCc-cc-----c-c
Q 040410            5 AKKKQHTYVRLQAKHYTGE-LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFN-KLSSE-FS-----C-S   74 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~-----~-~   74 (171)
                      ..+++|++|++++|.+++. ++..+..+++|++ ++++|.+.+..+..+..+++|++|++++| .+++. ++     + +
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            3456666666666666543 4555566666666 66666665455555666667777777666 44432 22     4 6


Q ss_pred             cceEecccc-ccccc-ChhhhhcCc-CCcEEEcccc--ccc-ccccccccCCCCCceEecccCc-cchhhhHHhhccccC
Q 040410           75 LKRLFLVSC-NFWEK-VPHSINNFA-RLQWYDLVFN--KFS-GELLASTKNLKSLEVLAINKCN-FFNRILFLLRNLIQL  147 (171)
Q Consensus        75 L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L  147 (171)
                      |++|++++| .+++. ++..+..++ +|++|++++|  .+. +.++..+..+++|++|++++|. +++..+..+..+++|
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            677777766 66543 455566666 6777777666  333 3455555666677777777666 554555566666667


Q ss_pred             ceEecccCc
Q 040410          148 IILHLSQNS  156 (171)
Q Consensus       148 ~~L~l~~n~  156 (171)
                      ++|++++|.
T Consensus       250 ~~L~l~~~~  258 (336)
T 2ast_B          250 QHLSLSRCY  258 (336)
T ss_dssp             CEEECTTCT
T ss_pred             CEeeCCCCC
Confidence            777776664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=9.1e-19  Score=128.09  Aligned_cols=155  Identities=23%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L   78 (171)
                      +..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. .+++ +..+++|++|++++|.+.+...   + +|++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence            4467899999999999987 34 6888999999 99999998 5665 9999999999999999886433   6 89999


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++++|.+.+ ++ .+..+++|+.|++++|.+.+ ++. ++.+++|++|++++|.+.+ ++. +..+++|++|++++|.+.
T Consensus       113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            999999985 44 38899999999999999984 444 8899999999999999985 444 889999999999999998


Q ss_pred             cccCcccccccC
Q 040410          159 GRIKLDFELSKE  170 (171)
Q Consensus       159 ~~~p~~~~~l~~  170 (171)
                      +. +. +..+++
T Consensus       187 ~~-~~-l~~l~~  196 (308)
T 1h6u_A          187 DI-SP-LASLPN  196 (308)
T ss_dssp             CC-GG-GGGCTT
T ss_pred             cC-hh-hcCCCC
Confidence            53 32 555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=3.9e-19  Score=127.38  Aligned_cols=148  Identities=23%  Similarity=0.235  Sum_probs=128.2

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceE
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRL   78 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L   78 (171)
                      .+..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. .+++ +..+++|++|++++|++.+..+  . +|++|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEE
T ss_pred             chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCcCccccCcccEE
Confidence            45678999999999999986 44 7889999999 99999998 5665 9999999999999999986433  4 89999


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++++|++.+ .+ .+..+++|+.|++++|.+.+ ++ .++.+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.
T Consensus       112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            999999985 43 68899999999999999984 44 688999999999999999864  66889999999999999987


Q ss_pred             cc
Q 040410          159 GR  160 (171)
Q Consensus       159 ~~  160 (171)
                      +.
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.5e-19  Score=132.19  Aligned_cols=159  Identities=13%  Similarity=-0.003  Sum_probs=128.3

Q ss_pred             cCCCCcEEEeecccccCCCCCcc--CCcchhhh-hcCCCccCCcCC----ccCCCCCCCcEEEccCCcCCCccc-----c
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLS--GNLRSLKE-DLSKNNSSGELP----TSIGNLFPLKELDFLFNKLSSEFS-----C   73 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~-~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~-----~   73 (171)
                      .+++|++|++++|.+++..|..+  ..+++|++ ++++|.+.+..+    ..+..+++|++|++++|.+.+..+     +
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            34669999999999998888887  88999999 999999885444    235579999999999999976655     5


Q ss_pred             -ccceEeccccccccc--Ch--hhhhcCcCCcEEEcccccccccccc----cccCCCCCceEecccCccchhhhHHhhcc
Q 040410           74 -SLKRLFLVSCNFWEK--VP--HSINNFARLQWYDLVFNKFSGELLA----STKNLKSLEVLAINKCNFFNRILFLLRNL  144 (171)
Q Consensus        74 -~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  144 (171)
                       +|++|++++|++.+.  .+  ..++.+++|++|++++|.+. .++.    .++.+++|++|++++|.+.+..|..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence             899999999987642  22  23467899999999999986 3343    24678999999999999987767767776


Q ss_pred             ---ccCceEecccCccccccCcccc
Q 040410          145 ---IQLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       145 ---~~L~~L~l~~n~~~~~~p~~~~  166 (171)
                         ++|++|++++|.+. .+|..+.
T Consensus       248 ~~~~~L~~L~Ls~N~l~-~lp~~~~  271 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLE-QVPKGLP  271 (310)
T ss_dssp             CCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred             cCcCcCCEEECCCCCCC-chhhhhc
Confidence               69999999999998 5777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=9.8e-19  Score=137.21  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             CCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc--cc-----c-ccceEecccccccccChh-hhhcCcC
Q 040410           29 GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE--FS-----C-SLKRLFLVSCNFWEKVPH-SINNFAR   98 (171)
Q Consensus        29 ~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-----~-~L~~L~l~~~~~~~~~~~-~~~~l~~   98 (171)
                      ..+++|++ ++++|.+.+..|..+..+++|++|++++|.+++.  .|     + +|++|++++|.+.+.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56788888 9999988877788888999999999999988852  22     5 899999999999864554 4677889


Q ss_pred             CcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcc-cccccCC
Q 040410           99 LQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSKEF  171 (171)
Q Consensus        99 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~~L  171 (171)
                      |+.|++++|.+.+..|..+.  ++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..+++|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  499 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL  499 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence            99999999998877776554  68999999999988 67877779999999999999998 56766 6666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=2e-18  Score=132.65  Aligned_cols=147  Identities=23%  Similarity=0.261  Sum_probs=98.8

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR   77 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~   77 (171)
                      .+..+++|++|++++|.+++..+  +..+++|+. ++++|.+. .+++ +..+++|+.|++++|.+.+..+   + +|++
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  313 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLEDISPISNLKNLTY  313 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred             hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence            34556666666666666655322  566666777 77777665 3343 6667777777777777665444   4 6777


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      |++++|.+.+..+  ++.+++|+.|++++|.+.+.  ..++.+++|+.|++++|.+.+..|  +..+++|++|++++|.+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            7777777765443  56777777777777777642  457777788888888887776554  67777788888888877


Q ss_pred             cc
Q 040410          158 RG  159 (171)
Q Consensus       158 ~~  159 (171)
                      .+
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            65

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=3.1e-20  Score=136.31  Aligned_cols=132  Identities=20%  Similarity=0.165  Sum_probs=72.1

Q ss_pred             cchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEE
Q 040410           31 LRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWY  102 (171)
Q Consensus        31 l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  102 (171)
                      +++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+      + ++++|++++|.+++. + ....+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence            344555 666665554334445556666666666666554322      3 566666666665532 2 12235566666


Q ss_pred             EcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc-cccCcccc
Q 040410          103 DLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR-GRIKLDFE  166 (171)
Q Consensus       103 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~p~~~~  166 (171)
                      ++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. +.+|.++.
T Consensus       197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             ECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             ECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            66666665 34444556666666666666665 34555555566666666666655 33343333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=1.6e-18  Score=128.35  Aligned_cols=148  Identities=20%  Similarity=0.208  Sum_probs=127.4

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR   77 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~   77 (171)
                      .+..+++|+.+++++|.+++..+  +..+++|++ ++++|.+. ..+. +..+++|++|++++|.+.+...   + ++++
T Consensus       194 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  269 (347)
T 4fmz_A          194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKM  269 (347)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence            46788999999999999987433  888999999 99999998 4555 8899999999999999886432   6 9999


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      |++++|.+.+.  ..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..|  +..+++|++|++++|.+
T Consensus       270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            99999999853  468899999999999999998888899999999999999999986544  88999999999999987


Q ss_pred             c
Q 040410          158 R  158 (171)
Q Consensus       158 ~  158 (171)
                      +
T Consensus       346 ~  346 (347)
T 4fmz_A          346 K  346 (347)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=3.8e-18  Score=114.22  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccccc
Q 040410            7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCN   84 (171)
Q Consensus         7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~   84 (171)
                      .++|++|++++|.++ +.+|..+..+++|++ ++++|.+.+ + ..+..+++|++|++++|.+.                
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~----------------   84 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIF----------------   84 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCC----------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCc----------------
Confidence            467888888888876 456767777888888 888888763 3 56777778888888777765                


Q ss_pred             ccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhhh---HHhhccccCceEecccCcccc
Q 040410           85 FWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        85 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~  159 (171)
                        +..|..+..+++|+.|++++|.+.+ ++  ..++.+++|++|++++|.+.+..+   ..+..+++|++|++++|.+. 
T Consensus        85 --~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-  160 (168)
T 2ell_A           85 --GGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-  160 (168)
T ss_dssp             --SCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred             --hHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence              3467777778999999999998874 33  678889999999999999885433   37888999999999999886 


Q ss_pred             ccCcc
Q 040410          160 RIKLD  164 (171)
Q Consensus       160 ~~p~~  164 (171)
                      ++|..
T Consensus       161 ~~~~~  165 (168)
T 2ell_A          161 EAPDS  165 (168)
T ss_dssp             BCCSS
T ss_pred             hcccc
Confidence            45554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2.1e-19  Score=132.48  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=136.0

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCc-CCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGE-LPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      ++++.+++++|.+++..+ .+..+++|++ ++++|.+.+. ++..+..+++|++|++++|.+++..+     + +|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            789999999999988554 4668999999 9999998754 77788899999999999999876555     6 899999


Q ss_pred             cccc-ccccc-ChhhhhcCcCCcEEEcccc-ccccc-ccccccCCC-CCceEecccC--ccc-hhhhHHhhccccCceEe
Q 040410           80 LVSC-NFWEK-VPHSINNFARLQWYDLVFN-KFSGE-LLASTKNLK-SLEVLAINKC--NFF-NRILFLLRNLIQLIILH  151 (171)
Q Consensus        80 l~~~-~~~~~-~~~~~~~l~~L~~l~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~  151 (171)
                      +++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 67653 6667889999999999999 88754 677788899 9999999999  455 46778888999999999


Q ss_pred             cccCc-cccccCcccccccCC
Q 040410          152 LSQNS-FRGRIKLDFELSKEF  171 (171)
Q Consensus       152 l~~n~-~~~~~p~~~~~l~~L  171 (171)
                      +++|. +.+..+..+..+++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCCCCcCCHHHHHHHhCCCCC
Confidence            99999 666667777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=5.7e-18  Score=130.17  Aligned_cols=157  Identities=22%  Similarity=0.216  Sum_probs=88.2

Q ss_pred             cccCCCCcEEEeecccccCCCC--------------------CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEc
Q 040410            4 QAKKKQHTYVRLQAKHYTGELP--------------------FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF   62 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~--------------------~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l   62 (171)
                      +..+++|++|++++|.+++..+                    ..+..+++|++ ++++|.+.+ .++ +..+++|+.|++
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKL  272 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEEC
Confidence            4455556666665555554322                    23344445555 555555442 222 455555555555


Q ss_pred             cCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410           63 LFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL  138 (171)
Q Consensus        63 ~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  138 (171)
                      ++|.+.+..+   + +|++|++++|.+.+..+  ++.+++|+.|++++|.+.+..|  ++.+++|+.|++++|.+.+.  
T Consensus       273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  346 (466)
T 1o6v_A          273 GANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--  346 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             CCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence            5555554333   3 56666666666654222  5566666666666666664433  55666777777777766643  


Q ss_pred             HHhhccccCceEecccCccccccCcccccccC
Q 040410          139 FLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       139 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      ..+..+++|++|++++|.+.+..|  +..+++
T Consensus       347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  376 (466)
T 1o6v_A          347 SSLANLTNINWLSAGHNQISDLTP--LANLTR  376 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence            346677777777777777766544  444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=3.2e-18  Score=119.55  Aligned_cols=128  Identities=20%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL   80 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l   80 (171)
                      +++++|++++|.++...+..+..+++|+. ++++|.+.+..|..|..+++|++|++++|.++...+     + +|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57999999999999877778999999999 999999986668889999999999999999985443     6 8999999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN  135 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  135 (171)
                      ++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9999998778899999999999999999996666678999999999999998754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=3.5e-18  Score=135.02  Aligned_cols=154  Identities=19%  Similarity=0.092  Sum_probs=124.4

Q ss_pred             EEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccc
Q 040410           13 VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNF   85 (171)
Q Consensus        13 L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~   85 (171)
                      .+-++..++. +|..+-  ..+++ ++++|.+++..+..|.++++|++|++++|.+++..+     + +|++|++++|++
T Consensus        36 ~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            3433334544 554332  46889 999999985445679999999999999999985544     6 899999999999


Q ss_pred             cccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch-hhhHHhhccccCceEecccCccccccCcc
Q 040410           86 WEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN-RILFLLRNLIQLIILHLSQNSFRGRIKLD  164 (171)
Q Consensus        86 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p~~  164 (171)
                      .+..+..|..+++|++|++++|.+.+-.+..++++++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..|..
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            97666789999999999999999985444679999999999999999865 46788899999999999999998766666


Q ss_pred             ccccc
Q 040410          165 FELSK  169 (171)
Q Consensus       165 ~~~l~  169 (171)
                      +..+.
T Consensus       193 l~~L~  197 (635)
T 4g8a_A          193 LRVLH  197 (635)
T ss_dssp             GHHHH
T ss_pred             ccchh
Confidence            65543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3e-18  Score=135.47  Aligned_cols=156  Identities=19%  Similarity=0.172  Sum_probs=132.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L   78 (171)
                      +..+++|+.|++++|.+.. ++ .+..+++|+. ++++|.+. .+++ +..+++|+.|++++|.+.+...   + +|++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred             hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence            4568899999999999986 33 6889999999 99999998 4555 8899999999999999885333   6 89999


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ++++|.+.+ + ..+..+++|+.|++++|.+.+ + ..++.+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            999999985 3 468899999999999999984 3 678999999999999999986555  899999999999999998


Q ss_pred             cccCcccccccCC
Q 040410          159 GRIKLDFELSKEF  171 (171)
Q Consensus       159 ~~~p~~~~~l~~L  171 (171)
                      + + ..+..+++|
T Consensus       189 ~-l-~~l~~l~~L  199 (605)
T 1m9s_A          189 D-L-RALAGLKNL  199 (605)
T ss_dssp             B-C-GGGTTCTTC
T ss_pred             C-C-hHHccCCCC
Confidence            5 3 346666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.2e-17  Score=117.22  Aligned_cols=130  Identities=22%  Similarity=0.168  Sum_probs=113.8

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      .++|++|++++|.+++..+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+++..+     + +|++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            367999999999999988888999999999 999999974334457899999999999999986544     5 899999


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhh
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI  137 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  137 (171)
                      +++|++. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9999998 78888999999999999999998544467889999999999999987543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=2.3e-18  Score=118.23  Aligned_cols=139  Identities=15%  Similarity=0.212  Sum_probs=119.3

Q ss_pred             ccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcE
Q 040410           27 LSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQW  101 (171)
Q Consensus        27 ~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~  101 (171)
                      ..+.+++|+. ++++|.+. .+| .+..+++|++|++++|.+....+   + +|++|++++|.+++..+..++.+++|+.
T Consensus        39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3467889999 99999998 677 68999999999999997764323   6 8999999999999777888999999999


Q ss_pred             EEcccccccccccccccCCCCCceEecccCc-cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          102 YDLVFNKFSGELLASTKNLKSLEVLAINKCN-FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       102 l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      |++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L  183 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL  183 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence            9999999998788999999999999999998 55 566 68999999999999999985 44 66666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=4.8e-20  Score=138.56  Aligned_cols=155  Identities=21%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             ccCCCCcEEEeecccccC----CCCCccCCcchhhh-hcCCCccCCcCCcc----CCCC---------CCCcEEEccCCc
Q 040410            5 AKKKQHTYVRLQAKHYTG----ELPFLSGNLRSLKE-DLSKNNSSGELPTS----IGNL---------FPLKELDFLFNK   66 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~-~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~   66 (171)
                      ..+++|++|+|++|.++.    .++..+..+++|++ ++++|.+....+..    +..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            345555555555555554    23334444555555 55555543211111    1112         455555555555


Q ss_pred             CC-Cccc--------c-ccceEecccccccc-----cChhhhhcCcCCcEEEccccccc----ccccccccCCCCCceEe
Q 040410           67 LS-SEFS--------C-SLKRLFLVSCNFWE-----KVPHSINNFARLQWYDLVFNKFS----GELLASTKNLKSLEVLA  127 (171)
Q Consensus        67 ~~-~~~~--------~-~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~l~l~~n~~~----~~~~~~~~~l~~L~~L~  127 (171)
                      ++ ...+        + +|++|++++|++..     ..+..+..+++|+.|++++|.+.    ..+|..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            54 1111        3 55556665555542     12224445555666666655553    34455555555556666


Q ss_pred             cccCccchh----hhHHhhc--cccCceEecccCcccc
Q 040410          128 INKCNFFNR----ILFLLRN--LIQLIILHLSQNSFRG  159 (171)
Q Consensus       128 l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+.+.    ++..+..  +++|++|++++|.+.+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            655555543    3333322  5555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.75  E-value=9e-18  Score=110.25  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=93.9

Q ss_pred             CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccccc
Q 040410            7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCN   84 (171)
Q Consensus         7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~   84 (171)
                      .++++.|++++|.++ +.+|..+..+++|+. ++++|.+.+ + +.+..+++|++|++++|.++                
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~----------------   77 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVS----------------   77 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCC----------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCccc----------------
Confidence            356777777777776 456666667777777 777776663 3 45666677777777766655                


Q ss_pred             ccccChhhhhcCcCCcEEEccccccccc-ccccccCCCCCceEecccCccchhhh---HHhhccccCceEeccc
Q 040410           85 FWEKVPHSINNFARLQWYDLVFNKFSGE-LLASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHLSQ  154 (171)
Q Consensus        85 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~  154 (171)
                        +..|..++.+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..+   ..+..+++|++|++++
T Consensus        78 --~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           78 --GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             --SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             --chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence              34777777889999999999998752 34788899999999999999886544   4688889999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.1e-18  Score=125.84  Aligned_cols=145  Identities=19%  Similarity=0.136  Sum_probs=121.6

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCC-CCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIG-NLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      ++++++++.++. +|..+.  ..++. ++++|.+++..+..+. .+++|++|++++|.+.+..+     + +|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            688999998887 565543  45788 9999999855555566 89999999999999986554     6 899999999


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-h---hccccCceEecccCccc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-L---RNLIQLIILHLSQNSFR  158 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~---~~~~~L~~L~l~~n~~~  158 (171)
                      |.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|.. +   ..+++|++|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99997767788999999999999999997667899999999999999999985 4543 4   57899999999999998


Q ss_pred             c
Q 040410          159 G  159 (171)
Q Consensus       159 ~  159 (171)
                      .
T Consensus       177 ~  177 (361)
T 2xot_A          177 K  177 (361)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=7.9e-18  Score=117.53  Aligned_cols=129  Identities=19%  Similarity=0.132  Sum_probs=114.5

Q ss_pred             CCCcEEEeecccccCCCC-CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            8 KQHTYVRLQAKHYTGELP-FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      ..+++|++++|.+++..+ ..+..+++|+. ++++|.+++..+..|..+++|++|++++|.+++..+     + +|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999988644 45889999999 999999986556689999999999999999986655     6 899999


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchh
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNR  136 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  136 (171)
                      +++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999987788999999999999999999977788999999999999999998754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=6.6e-18  Score=132.53  Aligned_cols=144  Identities=19%  Similarity=0.157  Sum_probs=99.5

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEeccc
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLFLVS   82 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~l~~   82 (171)
                      +++|++|++++|.+++ +|. +..  +|+. ++++|.+++ +|.   .+++|++|++++|.+++ +|  + +|++|++++
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCC
Confidence            4556666666666665 444 443  6666 666666663 554   56777777777777765 44  5 788888888


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC-------ceEecccCccchhhhHHhhccccCceEecccC
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL-------EVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      |.+++ +|. +.  ++|+.|++++|.+. .+|. +..  +|       +.|++++|.++ .+|..+..+++|++|++++|
T Consensus       170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            88775 555 44  77888888888877 6676 554  66       88888888887 57777777888888888888


Q ss_pred             ccccccCcccccc
Q 040410          156 SFRGRIKLDFELS  168 (171)
Q Consensus       156 ~~~~~~p~~~~~l  168 (171)
                      .+.+.+|..+..+
T Consensus       241 ~l~~~~p~~l~~l  253 (571)
T 3cvr_A          241 PLSSRIRESLSQQ  253 (571)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHh
Confidence            8887777666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=3.7e-17  Score=125.51  Aligned_cols=148  Identities=17%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc------------
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE------------   70 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------   70 (171)
                      ++.+++|++|++++|.+++. +  ++.+++|++ ++++|.+++ +|  +..+++|++|++++|.+++.            
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~  154 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEE
T ss_pred             cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEE
Confidence            45566666666666666652 2  556666666 666666653 33  55566666666666655432            


Q ss_pred             ---------cc---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhh
Q 040410           71 ---------FS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI  137 (171)
Q Consensus        71 ---------~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  137 (171)
                               ++   + ++++|++++|++++ +|  ++.+++|+.|++++|.+.+ +  .++.+++|+.|++++|.+.+ +
T Consensus       155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-i  227 (457)
T 3bz5_A          155 CHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-I  227 (457)
T ss_dssp             CTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-C
T ss_pred             CCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-c
Confidence                     22   3 45555555555543 22  4455566666666665553 2  25566677777777777664 4


Q ss_pred             hHHhhccccCceEecccCccccccCcccc
Q 040410          138 LFLLRNLIQLIILHLSQNSFRGRIKLDFE  166 (171)
Q Consensus       138 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~  166 (171)
                      |  ++.+++|++|++++|.+.+..+..+.
T Consensus       228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~  254 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVNPLTELDVSTLS  254 (457)
T ss_dssp             C--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred             C--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence            5  56667777777777777654333333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=5.5e-17  Score=124.55  Aligned_cols=145  Identities=20%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|++|++++|.+++. +  ++.+++|++ ++++|.+++ ++  +..+++|++|++++|.+++ ++   + +|+
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~  130 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLT  130 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCC
T ss_pred             hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ecCCCCCcCC
Confidence            4678899999999999999884 3  889999999 999999984 44  8899999999999999986 45   6 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh------------------
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL------------------  138 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------  138 (171)
                      +|++++|.+++. +  ++.+++|+.|++++|...+.+  .++.+++|+.|++++|.+.+ +|                  
T Consensus       131 ~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          131 YLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCC
Confidence            999999998853 2  555566666666665333233  24444445555555444442 22                  


Q ss_pred             -HHhhccccCceEecccCcccc
Q 040410          139 -FLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       139 -~~~~~~~~L~~L~l~~n~~~~  159 (171)
                       ..++.+++|++|++++|.+.+
T Consensus       205 ~~~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          205 KLDLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CCCCTTCTTCSEEECCSSCCSC
T ss_pred             eeccccCCCCCEEECcCCcccc
Confidence             014555566666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=3.7e-18  Score=137.57  Aligned_cols=141  Identities=18%  Similarity=0.112  Sum_probs=113.2

Q ss_pred             CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcC
Q 040410           24 LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNF   96 (171)
Q Consensus        24 ~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l   96 (171)
                      .+..+..+..|+. ++++|.+. .+|..+..+++|++|++++|.++ .+|     + +|++|++++|.++ .+|..++.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            4667888899999 99999987 78888889999999999999988 555     5 8999999999998 789899999


Q ss_pred             cCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhcccc-CceEecccCccccccCcccccc
Q 040410           97 ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFELS  168 (171)
Q Consensus        97 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~~l  168 (171)
                      ++|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+|..+..... ...+++++|.+.+.+|..+..+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l  364 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI  364 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence            99999999999997 88988999999999999999999888887766532 2346788888888777766544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=2.8e-17  Score=112.41  Aligned_cols=125  Identities=20%  Similarity=0.123  Sum_probs=101.8

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      ++++++++.++. +|..+..  ++++ ++++|.+.+..+. .+..+++|++|++++|.+++..|     + +|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            789999999876 5665543  8889 9999999743333 38899999999999999987655     5 788999999


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL  138 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  138 (171)
                      |++.+..+..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            98887777778888889999999998887778888888899999999988876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1.4e-18  Score=130.59  Aligned_cols=83  Identities=13%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             cccCCCCcEEEeecccccCCCC----CccCCcchhhh-hcCCCccC---CcCCccC-------CCCCCCcEEEccCCcCC
Q 040410            4 QAKKKQHTYVRLQAKHYTGELP----FLSGNLRSLKE-DLSKNNSS---GELPTSI-------GNLFPLKELDFLFNKLS   68 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~-~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~   68 (171)
                      +..+++|++|+|++|.++...+    ..+..+++|++ ++++|.+.   +.+|..+       ..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3445566666666666554322    22445555666 55554322   2223322       45555666666665555


Q ss_pred             Cc----cc-----c-ccceEeccccccc
Q 040410           69 SE----FS-----C-SLKRLFLVSCNFW   86 (171)
Q Consensus        69 ~~----~~-----~-~L~~L~l~~~~~~   86 (171)
                      ..    ++     + +|++|++++|.++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            41    22     3 5555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=5.4e-17  Score=111.02  Aligned_cols=123  Identities=21%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410           35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF  106 (171)
Q Consensus        35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  106 (171)
                      +. +++++.+. .+|..+..  ++++|++++|.+.+..+      + +|++|++++|.+++..|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            44 66666665 56655433  67777777776654332      4 677777777777766666777777777777777


Q ss_pred             ccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410          107 NKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus       107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      |.+.+..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            777655555566777777777777777766666677777777777777776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=3.2e-18  Score=127.70  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=85.2

Q ss_pred             ccCC-CCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCcc----CCCC-CCCcEEEccCCcCCCccc
Q 040410            5 AKKK-QHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTS----IGNL-FPLKELDFLFNKLSSEFS   72 (171)
Q Consensus         5 ~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~   72 (171)
                      ..++ +|++|+|++|.+++..+..++.+     ++|++ ++++|.+++..+..    +..+ ++|++|++++|.+++..+
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            3444 56666666666655444444443     55666 66666655332322    2233 566666666666654332


Q ss_pred             ----------c-ccceEecccccccccCh----hhhhcCc-CCcEEEccccccccccccccc----CC-CCCceEecccC
Q 040410           73 ----------C-SLKRLFLVSCNFWEKVP----HSINNFA-RLQWYDLVFNKFSGELLASTK----NL-KSLEVLAINKC  131 (171)
Q Consensus        73 ----------~-~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~l~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n  131 (171)
                                . +|++|++++|.+++...    ..+...+ +|++|++++|.+.+..+..++    .+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence                      2 56666666666654332    2333443 677777777766654444333    23 46777777777


Q ss_pred             ccchh----hhHHhhc-cccCceEecccCcccc
Q 040410          132 NFFNR----ILFLLRN-LIQLIILHLSQNSFRG  159 (171)
Q Consensus       132 ~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~  159 (171)
                      .+.+.    ++..+.. .++|++|++++|.+.+
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            66542    4444544 3467777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1e-17  Score=119.97  Aligned_cols=152  Identities=22%  Similarity=0.187  Sum_probs=124.5

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecc
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLV   81 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~   81 (171)
                      +.+++.++++.+.+++. + .+..+++|+. ++++|.+. .++ .+..+++|++|++++|.+.+..+   + +|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence            44566677888888763 3 6788999999 99999987 666 68899999999999999987655   6 89999999


Q ss_pred             cccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccccc
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  161 (171)
                      +|++.+ ++. +.. ++|+.|++++|.+.+ ++ .++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+. 
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-
Confidence            999985 443 223 899999999999984 44 58899999999999999985 44 688999999999999999864 


Q ss_pred             CcccccccCC
Q 040410          162 KLDFELSKEF  171 (171)
Q Consensus       162 p~~~~~l~~L  171 (171)
                       ..+..+++|
T Consensus       166 -~~l~~l~~L  174 (263)
T 1xeu_A          166 -GGLTRLKKV  174 (263)
T ss_dssp             -TTSTTCCCC
T ss_pred             -HHhccCCCC
Confidence             556655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.2e-19  Score=142.53  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=123.8

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-------------cCCcCCccCCC----------------
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-------------SSGELPTSIGN----------------   53 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-------------~~~~~~~~~~~----------------   53 (171)
                      +..+++|+.|+|++|.++. +|..++.+++|++ ++++|.             ..+..|..+..                
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            3567788889999998874 6888888888888 876653             12222222111                


Q ss_pred             ----------------CCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEccccccccc
Q 040410           54 ----------------LFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE  112 (171)
Q Consensus        54 ----------------l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  112 (171)
                                      ...|+.|++++|.+++ +|    + +|+.|++++|.++ .+|..++.+++|+.|++++|.+.+ 
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence                            1258899999999885 45    6 8999999999998 789999999999999999999984 


Q ss_pred             ccccccCCCCCceEecccCccchhh-hHHhhccccCceEecccCccccccC
Q 040410          113 LLASTKNLKSLEVLAINKCNFFNRI-LFLLRNLIQLIILHLSQNSFRGRIK  162 (171)
Q Consensus       113 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~p  162 (171)
                      +| .++.+++|+.|++++|.+.+.. |..++.+++|++|++++|.+.+..|
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            77 8999999999999999998765 8899999999999999999986533

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.68  E-value=1.4e-17  Score=127.80  Aligned_cols=155  Identities=15%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCC-------------cEEEccCCcCCCcc
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPL-------------KELDFLFNKLSSEF   71 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~   71 (171)
                      ..+.|+++++++|.+ +.+|..++++++|++ ++++|.+.+.+|++++.+.+|             +++++++|.+++..
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            456677777777777 456777777777777 777777766677766665543             55555555555321


Q ss_pred             c-c-ccceEecccccccccChhhh----------------hcC-cCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410           72 S-C-SLKRLFLVSCNFWEKVPHSI----------------NNF-ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN  132 (171)
Q Consensus        72 ~-~-~L~~L~l~~~~~~~~~~~~~----------------~~l-~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  132 (171)
                      . . ++++|++++|.+++ +|..+                ... ++|++|++++|.+.+ +| .++.+++|++|++++|.
T Consensus        88 ~~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           88 ELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             SCCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             CCcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence            1 2 44555554444443 22211                111 466777777776663 55 46777777777777777


Q ss_pred             cchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      +.+ +|..   .++|++|++++|.+.+ +| .+..+++
T Consensus       165 l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~  196 (454)
T 1jl5_A          165 LKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPF  196 (454)
T ss_dssp             CSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             Ccc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCC
Confidence            663 4432   2467777777777764 45 4555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.68  E-value=1.4e-17  Score=124.16  Aligned_cols=153  Identities=17%  Similarity=0.075  Sum_probs=121.7

Q ss_pred             CCCCcEEEeecccccCCCC----CccCCcc-hhhh-hcCCCccCCcCCccCCCC-----CCCcEEEccCCcCCCccc---
Q 040410            7 KKQHTYVRLQAKHYTGELP----FLSGNLR-SLKE-DLSKNNSSGELPTSIGNL-----FPLKELDFLFNKLSSEFS---   72 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~---   72 (171)
                      .++|++|+|++|.+++..+    ..+..++ +|++ ++++|.+.+..+..+..+     ++|++|++++|.+++..+   
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4459999999999988665    5677888 8999 999999986556556654     899999999999986554   


Q ss_pred             -------c-ccceEecccccccccChhhhhc-----CcCCcEEEcccccccccc----cccccCCC-CCceEecccCccc
Q 040410           73 -------C-SLKRLFLVSCNFWEKVPHSINN-----FARLQWYDLVFNKFSGEL----LASTKNLK-SLEVLAINKCNFF  134 (171)
Q Consensus        73 -------~-~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~l~l~~n~~~~~~----~~~~~~l~-~L~~L~l~~n~~~  134 (171)
                             . +|++|++++|.+++..+..+..     .++|++|++++|.+.+..    +..+..+. +|++|++++|.+.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                   2 6999999999998776665543     368999999999998543    44445555 9999999999998


Q ss_pred             hhhhHHhhc----c-ccCceEecccCcccc
Q 040410          135 NRILFLLRN----L-IQLIILHLSQNSFRG  159 (171)
Q Consensus       135 ~~~~~~~~~----~-~~L~~L~l~~n~~~~  159 (171)
                      +..+..+..    . ++|++|++++|.+.+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            766554444    4 699999999999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=1e-16  Score=119.06  Aligned_cols=163  Identities=17%  Similarity=0.052  Sum_probs=95.8

Q ss_pred             cccCCCCcEEEeecccccCCCC-CccCCcchhhh--hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410            4 QAKKKQHTYVRLQAKHYTGELP-FLSGNLRSLKE--DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S   74 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~--~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~   74 (171)
                      |.++++|++|+|++|.+.+.++ ..|..++++++  .+.+|.+....|..|..+++|++|++++|.+....+     . +
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  129 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  129 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence            4455555555555555544333 23445555444  344455543334455666677777776666654333     2 4


Q ss_pred             cceEeccc-ccccccChhhhhcCc-CCcEEEcccccccccccccccCCCCCceEeccc-Cccchhhh-HHhhccccCceE
Q 040410           75 LKRLFLVS-CNFWEKVPHSINNFA-RLQWYDLVFNKFSGELLASTKNLKSLEVLAINK-CNFFNRIL-FLLRNLIQLIIL  150 (171)
Q Consensus        75 L~~L~l~~-~~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~-~~~~~~~~L~~L  150 (171)
                      +..+.+.+ +.+....+..+..+. .++.|++++|.+. .++.......+++.+++.+ |.+. .+| .+|..+++|++|
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL  207 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence            45555544 334332233444443 5788888888887 6676666667888888875 4444 565 467888999999


Q ss_pred             ecccCccccccCc-cccccc
Q 040410          151 HLSQNSFRGRIKL-DFELSK  169 (171)
Q Consensus       151 ~l~~n~~~~~~p~-~~~~l~  169 (171)
                      ++++|.+.. +|. .+..++
T Consensus       208 dLs~N~l~~-lp~~~~~~L~  226 (350)
T 4ay9_X          208 DISRTRIHS-LPSYGLENLK  226 (350)
T ss_dssp             ECTTSCCCC-CCSSSCTTCC
T ss_pred             hcCCCCcCc-cChhhhccch
Confidence            999999874 443 354443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=2.9e-17  Score=132.45  Aligned_cols=154  Identities=18%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-h-----cCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-D-----LSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      +.++.|+|..+.+.. .+..+.....|+. .     +..|.+. ..+..+..+++|+.|++++|.+. .+|     + .|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            457788888888776 3434333333333 3     3334443 45777889999999999999988 444     6 89


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            99999999999 78999999999999999999999 88999999999999999999997 78888999999999999999


Q ss_pred             ccccccCccccc
Q 040410          156 SFRGRIKLDFEL  167 (171)
Q Consensus       156 ~~~~~~p~~~~~  167 (171)
                      .+.+.+|..+..
T Consensus       327 ~l~~~~p~~~~~  338 (727)
T 4b8c_D          327 PLEKQFLKILTE  338 (727)
T ss_dssp             CCCSHHHHHHHH
T ss_pred             ccCCCChHHHhh
Confidence            999887776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.5e-16  Score=107.29  Aligned_cols=131  Identities=18%  Similarity=0.117  Sum_probs=83.0

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcc-hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEec
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLR-SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFL   80 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l   80 (171)
                      .+.++.+|++|++++|.++. ++ .+..+. +|+. ++++|.+++ + +.+..+++|++|++++|.+++           
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-----------   78 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-----------   78 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-----------
T ss_pred             hcCCcCCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-----------
Confidence            45567778888888888775 33 344444 7778 888887763 4 457777778888887777662           


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccc--cccCCCCCceEecccCccchhhhH----HhhccccCceEeccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA--STKNLKSLEVLAINKCNFFNRILF----LLRNLIQLIILHLSQ  154 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~  154 (171)
                             ..+..++.+++|+.|++++|.+. .+|.  .++.+++|+.|++++|.+. .+|.    .+..+++|++|+++.
T Consensus        79 -------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           79 -------IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             -------ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             -------cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence                   22223356666666666666664 4444  5566666666666666665 3343    256666666666666


Q ss_pred             Ccc
Q 040410          155 NSF  157 (171)
Q Consensus       155 n~~  157 (171)
                      |..
T Consensus       150 n~~  152 (176)
T 1a9n_A          150 VKL  152 (176)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=4.1e-16  Score=122.42  Aligned_cols=142  Identities=20%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEecccc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLFLVSC   83 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~l~~~   83 (171)
                      ++|++|+|++|.++. +|   ..+++|+. ++++|.+++ +|. +..  +|++|++++|.+++ +|  + +|++|++++|
T Consensus        80 ~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence            456666666666653 34   33566666 677776663 555 443  67777777777665 44  5 7777777777


Q ss_pred             cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccC-------ceEecccCc
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL-------IILHLSQNS  156 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~  156 (171)
                      .+++ +|.   .+++|+.|++++|.+.+ +|. ++  ++|+.|++++|.++ .+|. +..  +|       ++|++++|.
T Consensus       151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          151 QLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             ccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence            7764 444   45678888888887774 666 55  78888888888877 5665 443  56       888888888


Q ss_pred             cccccCcccccccCC
Q 040410          157 FRGRIKLDFELSKEF  171 (171)
Q Consensus       157 ~~~~~p~~~~~l~~L  171 (171)
                      +. .+|..+..+++|
T Consensus       219 l~-~lp~~l~~l~~L  232 (571)
T 3cvr_A          219 IT-HIPENILSLDPT  232 (571)
T ss_dssp             CC-CCCGGGGGSCTT
T ss_pred             ce-ecCHHHhcCCCC
Confidence            87 578777666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=107.45  Aligned_cols=120  Identities=24%  Similarity=0.231  Sum_probs=93.0

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC   83 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~   83 (171)
                      ++++++++.++. +|..+.  +++++ ++++|.++ .+|..+..+++|++|++++|.+++..+     + +|++|++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            678888888876 555443  57888 99999887 788888899999999999998875544     5 7888888888


Q ss_pred             cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410           84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  134 (171)
                      .+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            887666667788888888888888887433345777888888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=1.9e-16  Score=103.84  Aligned_cols=121  Identities=20%  Similarity=0.200  Sum_probs=96.2

Q ss_pred             cchhhh-hcCCCccC-CcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccc
Q 040410           31 LRSLKE-DLSKNNSS-GELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNK  108 (171)
Q Consensus        31 l~~L~~-~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~  108 (171)
                      .+++++ ++++|.+. +.+|..+..+++|++|++++|.+.                  + . ..++.+++|+.|++++|.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------~-~-~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------------S-I-ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC------------------C-C-TTCCCCTTCCEEECCSSC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC------------------C-c-hhhhcCCCCCEEECCCCc
Confidence            466777 77888776 567777777778888887777765                  2 2 567888999999999999


Q ss_pred             ccccccccccCCCCCceEecccCccchh-hhHHhhccccCceEecccCccccccC---cccccccCC
Q 040410          109 FSGELLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRGRIK---LDFELSKEF  171 (171)
Q Consensus       109 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L  171 (171)
                      +.+.+|..++.+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+   ..+..+++|
T Consensus        76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            9976888888899999999999999863 34778999999999999999986433   356666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=5.5e-18  Score=129.67  Aligned_cols=154  Identities=19%  Similarity=0.149  Sum_probs=98.8

Q ss_pred             cCCCCcEEEeecccccCCC-----CCccCCcchhhh-hcCCCccCCc----CCccCCCCCCCcEEEccCCcCCCccc---
Q 040410            6 KKKQHTYVRLQAKHYTGEL-----PFLSGNLRSLKE-DLSKNNSSGE----LPTSIGNLFPLKELDFLFNKLSSEFS---   72 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~-----~~~~~~l~~L~~-~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~---   72 (171)
                      .+++|++|++++|.+++..     +..+..+++|++ ++++|.++..    ++..+..+++|++|++++|.+.+..+   
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            3455666666665554321     111223556666 6666665521    34445556777777777776643222   


Q ss_pred             -------c-ccceEeccccccccc----ChhhhhcCcCCcEEEcccccccccccccccC-----CCCCceEecccCccch
Q 040410           73 -------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTKN-----LKSLEVLAINKCNFFN  135 (171)
Q Consensus        73 -------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~  135 (171)
                             . ++++|++++|.+++.    ++..+..+++|+.|++++|.+.+..+..++.     .++|+.|++++|.+++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence                   2 677777777777644    3455666788888888888877655555543     5688888888888875


Q ss_pred             ----hhhHHhhccccCceEecccCcccc
Q 040410          136 ----RILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       136 ----~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                          .+|..+..+++|++|++++|.+.+
T Consensus       385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          385 SSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence                677777888888888888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=8.8e-16  Score=103.50  Aligned_cols=126  Identities=17%  Similarity=0.109  Sum_probs=95.7

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      .+.++++++.++. +|..+  .+++++ ++++|.+.+..+..+..+++|++|++++|.+++..+     + +|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            5788888888876 44333  368888 999999885444457889999999999998875443     5 788888888


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL  138 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  138 (171)
                      |.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88886555567788889999998888874333445778888899998888876544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=1.5e-15  Score=116.44  Aligned_cols=139  Identities=23%  Similarity=0.204  Sum_probs=75.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEe
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLF   79 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~   79 (171)
                      +.++++|++|++++|.+++ +|..+   .+|++ ++++|.+. .+| .++.+++|++|++++|.+.+ +|  . ++++|+
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~  221 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV  221 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEE
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEE
Confidence            4444555555555555443 23222   24455 55555554 244 36666677777777776664 33  3 677777


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|.+. .+| .++.+++|+.|++++|.+. .+|..   +.+|+.|++++|.+.+ +|..   .++|++|++++|.+.+
T Consensus       222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             CcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            7777666 455 3666777777777777666 34432   2455555555555543 3321   2345555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=2.7e-18  Score=117.98  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=120.2

Q ss_pred             cccCCCCcEEEeecccccCCCCC------ccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPF------LSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----   72 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~------~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----   72 (171)
                      +.....++.++++.+.+++..|.      .+..+++|++ ++++|.+. .+| .+..+++|++|++++|.+. .+|    
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44566777788888888776666      7888999999 99999998 477 7889999999999999988 445    


Q ss_pred             -c-ccceEecccccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhhhH---------
Q 040410           73 -C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRILF---------  139 (171)
Q Consensus        73 -~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~---------  139 (171)
                       + +|++|++++|.+.+ +| .++.+++|+.|++++|.+.+ ++  ..++.+++|++|++++|.+.+..|.         
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence             5 89999999999985 45 68889999999999999884 33  4788999999999999998766543         


Q ss_pred             -HhhccccCceEecccCccc
Q 040410          140 -LLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       140 -~~~~~~~L~~L~l~~n~~~  158 (171)
                       .+..+++|++||  ++.+.
T Consensus       168 ~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          168 EVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHhCCCcEEEC--CcccC
Confidence             378889999887  56654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=1.3e-15  Score=120.80  Aligned_cols=84  Identities=18%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS  153 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  153 (171)
                      +|++|++++|.+++ +|   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.+. .+|..+.++++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            56666666666653 43   34466777777777766 4555   4567778888888777 567777788888888888


Q ss_pred             cCccccccCcccc
Q 040410          154 QNSFRGRIKLDFE  166 (171)
Q Consensus       154 ~n~~~~~~p~~~~  166 (171)
                      +|.+.+..|..+.
T Consensus       293 ~N~l~~~~~~~l~  305 (622)
T 3g06_A          293 GNPLSERTLQALR  305 (622)
T ss_dssp             SCCCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHH
Confidence            8887765555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=3.8e-17  Score=125.00  Aligned_cols=116  Identities=14%  Similarity=0.050  Sum_probs=60.5

Q ss_pred             CCCCcEEEccCCcCCCc----cc-----c-ccceEecccccccccChhhhhcC-----cCCcEEEccccccccc----cc
Q 040410           54 LFPLKELDFLFNKLSSE----FS-----C-SLKRLFLVSCNFWEKVPHSINNF-----ARLQWYDLVFNKFSGE----LL  114 (171)
Q Consensus        54 l~~L~~L~l~~~~~~~~----~~-----~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~----~~  114 (171)
                      +++|++|++++|.++..    ++     + +|++|++++|.+.+..+..+...     ++|+.|++++|.+.+.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            45555555555555432    12     3 45555555555543333222221     3566666666555533    34


Q ss_pred             ccccCCCCCceEecccCccchhhhHHhhc-----cccCceEecccCcccc----ccCccccccc
Q 040410          115 ASTKNLKSLEVLAINKCNFFNRILFLLRN-----LIQLIILHLSQNSFRG----RIKLDFELSK  169 (171)
Q Consensus       115 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~p~~~~~l~  169 (171)
                      ..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+.+    .+|..+..++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            44555567777777777666544443332     4567777777777663    4454444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.6e-15  Score=99.65  Aligned_cols=115  Identities=19%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             CCCcEEEccCCcCC-Cccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEe
Q 040410           55 FPLKELDFLFNKLS-SEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA  127 (171)
Q Consensus        55 ~~L~~L~l~~~~~~-~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~  127 (171)
                      ++|++|++++|.+. +.+|     + +|++|++++|.+.+.  ..++.+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45556666665554 3333     3 566666666666543  6788899999999999999976888888899999999


Q ss_pred             cccCccchh-hhHHhhccccCceEecccCccccccC---cccccccCC
Q 040410          128 INKCNFFNR-ILFLLRNLIQLIILHLSQNSFRGRIK---LDFELSKEF  171 (171)
Q Consensus       128 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L  171 (171)
                      +++|.+.+. .+..+..+++|++|++++|.+.+..+   ..+..+++|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            999999853 22678899999999999999986433   256666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=1.5e-14  Score=114.71  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=73.1

Q ss_pred             CCCcEEEccCCcCCCccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410           55 FPLKELDFLFNKLSSEFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN  132 (171)
Q Consensus        55 ~~L~~L~l~~~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  132 (171)
                      ++|+.|++++|.+++..+ . +|+.|++++|.+. .+|.   .+++|+.|++++|.+. .+|   ..+++|+.|++++|.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCC
Confidence            555555666555553222 3 5666666666655 2332   2367888888888887 456   455789999999998


Q ss_pred             cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      +. .+|.   .+++|++|++++|.+. .+|..+..+++|
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence            87 4665   6788999999999998 788888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=7.2e-15  Score=115.52  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             hhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410           34 LKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF  106 (171)
Q Consensus        34 L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  106 (171)
                      |+. ++++|.++ .+|. +..+++|+.|++++|.++ .+|     + +|++|++++|.+++ +| .++.+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            444 55555554 3443 555555555555555555 333     3 55555555555654 66 789999999999999


Q ss_pred             ccccccc-cccccCCCCCceEecccCccchhhh---HHhhccccCceEec
Q 040410          107 NKFSGEL-LASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHL  152 (171)
Q Consensus       107 n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l  152 (171)
                      |.+.+.. |..++.+++|+.|++++|.+.+..|   ..+..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9998654 8899999999999999999886433   23445788888863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=3.7e-17  Score=112.29  Aligned_cols=131  Identities=21%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             CCcchhhh-hcCCCccCCcCCc------cCCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcC
Q 040410           29 GNLRSLKE-DLSKNNSSGELPT------SIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNF   96 (171)
Q Consensus        29 ~~l~~L~~-~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l   96 (171)
                      .....++. +++.+.+.+..|.      .+..+++|++|++++|.+.+ +|    + +|++|++++|.+. .+|..+..+
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            33455666 7777777766665      78889999999999999886 55    6 8999999999998 678788888


Q ss_pred             cCCcEEEcccccccccccccccCCCCCceEecccCccchhhh-HHhhccccCceEecccCccccccCc
Q 040410           97 ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL-FLLRNLIQLIILHLSQNSFRGRIKL  163 (171)
Q Consensus        97 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~  163 (171)
                      ++|+.|++++|.+.+ +| .++.+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999999999984 56 68899999999999999985322 4788999999999999999766554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3.3e-14  Score=95.72  Aligned_cols=108  Identities=20%  Similarity=0.085  Sum_probs=91.6

Q ss_pred             CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~   79 (171)
                      .++|++|++++|.+++..+..+..+++|++ ++++|.+++..+..+..+++|++|++++|.+++..+     + +|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            468999999999999866667899999999 999999985444557899999999999999986554     5 899999


Q ss_pred             cccccccccChhhhhcCcCCcEEEccccccccccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL  114 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  114 (171)
                      +++|.+++..+..+..+++|+.+++++|++.+..+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999986555556889999999999999876544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=3.3e-14  Score=97.20  Aligned_cols=121  Identities=19%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410           35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN  107 (171)
Q Consensus        35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n  107 (171)
                      +. +.+++.+. .+|..+.  ++++.|++++|.++ .+|     + +|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45 88889887 7887653  68999999999987 444     5 8999999999999777778999999999999999


Q ss_pred             cccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410          108 KFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9996666789999999999999999986545568899999999999999863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=5.1e-14  Score=104.53  Aligned_cols=161  Identities=17%  Similarity=0.041  Sum_probs=111.7

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcE-EEccCCcCCCccc-----c-ccceE
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKE-LDFLFNKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~-L~l~~~~~~~~~~-----~-~L~~L   78 (171)
                      +++++|+|++|.++...+..|..+++|++ ++++|.+.+.+|. .|.++++++. +.+..|++....|     + +|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            46888888888888755567888888888 8888887655554 4677887765 4556677764433     5 78888


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccc-ccccccc-ccccCC-CCCceEecccCccchhhhHHhhccccCceEeccc-
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFN-KFSGELL-ASTKNL-KSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ-  154 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~-~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-  154 (171)
                      ++++|++....+..+....++..+++.++ .+. .++ ..+..+ ..++.|++++|.+. .++.......+++++++.+ 
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccC
Confidence            88888887554445556667778887653 454 444 345555 46888999999988 4665555667899999875 


Q ss_pred             CccccccCc-ccccccCC
Q 040410          155 NSFRGRIKL-DFELSKEF  171 (171)
Q Consensus       155 n~~~~~~p~-~~~~l~~L  171 (171)
                      |.+. .+|. .|..+++|
T Consensus       188 n~l~-~i~~~~f~~l~~L  204 (350)
T 4ay9_X          188 NNLE-ELPNDVFHGASGP  204 (350)
T ss_dssp             TTCC-CCCTTTTTTEECC
T ss_pred             Cccc-CCCHHHhccCccc
Confidence            5554 5664 45666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.5e-14  Score=95.06  Aligned_cols=113  Identities=15%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             CCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCce
Q 040410           53 NLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEV  125 (171)
Q Consensus        53 ~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~  125 (171)
                      ..++|+.|++++|.+... +     . ++++|++++|.+.+.  ..++.+++|+.|++++|.+. .+|. .++.+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            344555555555554422 2     2 455555555555543  46788999999999999998 4564 4489999999


Q ss_pred             EecccCccchhhhH--HhhccccCceEecccCccccccCcc----cccccCC
Q 040410          126 LAINKCNFFNRILF--LLRNLIQLIILHLSQNSFRGRIKLD----FELSKEF  171 (171)
Q Consensus       126 L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~p~~----~~~l~~L  171 (171)
                      |++++|.+. .+|.  .+..+++|++|++++|.+. .+|..    +..+++|
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            999999996 4665  7889999999999999997 45664    6666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.2e-13  Score=92.49  Aligned_cols=100  Identities=19%  Similarity=0.096  Sum_probs=75.1

Q ss_pred             hhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410           34 LKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF  106 (171)
Q Consensus        34 L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  106 (171)
                      .++ ++++|.+. .+|..+  .+++++|++++|.+++..|     + +|++|++++|++.+..+..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456 88888887 678766  3788999999998886544     5 788888888888755555667788888888888


Q ss_pred             ccccccccccccCCCCCceEecccCccchh
Q 040410          107 NKFSGELLASTKNLKSLEVLAINKCNFFNR  136 (171)
Q Consensus       107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  136 (171)
                      |.+.+..+..+..+++|++|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            888744444577788888888888877543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=2e-15  Score=113.11  Aligned_cols=153  Identities=15%  Similarity=0.132  Sum_probs=114.9

Q ss_pred             CCCCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCccC-CCCCCCcEEEccCCcCCCccc-------
Q 040410            7 KKQHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTSI-GNLFPLKELDFLFNKLSSEFS-------   72 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-------   72 (171)
                      ++.|++|+|++|.++......++..     .+|++ ++++|.+.......+ ..+++|+.|++++|.++....       
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999876433333332     68999 999998863322222 346789999999999875322       


Q ss_pred             ---c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh----
Q 040410           73 ---C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR----  136 (171)
Q Consensus        73 ---~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----  136 (171)
                         . +|++|++++|.+++.    ++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.++..    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence               3 699999999998743    344556788999999999998754    355667778999999999999753    


Q ss_pred             hhHHhhccccCceEecccCcccc
Q 040410          137 ILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       137 ~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      ++.++...++|++|++++|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            44455667899999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.8e-13  Score=91.17  Aligned_cols=98  Identities=16%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410           35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN  107 (171)
Q Consensus        35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n  107 (171)
                      +. ++++|.+. .+|..+.  ++|++|++++|.+.+..|     + +|++|++++|++.+..+..+..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45 78888886 7787664  789999999998886544     5 7888888888887544445677788888888888


Q ss_pred             cccccccccccCCCCCceEecccCccch
Q 040410          108 KFSGELLASTKNLKSLEVLAINKCNFFN  135 (171)
Q Consensus       108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~  135 (171)
                      .+.+..+..+..+++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            8874333347778888888888887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=6.2e-13  Score=89.06  Aligned_cols=101  Identities=20%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecc
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLV   81 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~   81 (171)
                      ..++++++++.++. +|..+.  ++++. ++++|.+++..|..|..+++|++|++++|++++..+     + +|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999987 565553  78899 999999986667789999999999999999986554     5 89999999


Q ss_pred             cccccccChhhhhcCcCCcEEEccccccccc
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGE  112 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  112 (171)
                      +|++.+..+..+..+++|+.|++++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999976666789999999999999988743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1.3e-12  Score=87.79  Aligned_cols=99  Identities=21%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS   82 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~   82 (171)
                      -+.++++++.++. +|..+.  ++|++ ++++|.+.+..|..+..+++|++|++++|++++..+     + +|++|++++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3789999999876 566554  78999 999999986667789999999999999999986543     5 899999999


Q ss_pred             ccccccChhhhhcCcCCcEEEcccccccc
Q 040410           83 CNFWEKVPHSINNFARLQWYDLVFNKFSG  111 (171)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~  111 (171)
                      |.+.+..+..+..+++|+.|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99996555568999999999999999873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=2.5e-12  Score=94.60  Aligned_cols=162  Identities=10%  Similarity=-0.074  Sum_probs=106.0

Q ss_pred             CCCCcEEEeeccccc--------------------CCCCCccCC--------cchhhh-hcCCCccCCcCCccCCCCCCC
Q 040410            7 KKQHTYVRLQAKHYT--------------------GELPFLSGN--------LRSLKE-DLSKNNSSGELPTSIGNLFPL   57 (171)
Q Consensus         7 l~~L~~L~L~~~~~~--------------------~~~~~~~~~--------l~~L~~-~l~~~~~~~~~~~~~~~l~~L   57 (171)
                      +++|++|||++|.+.                    ...+..|..        +.+|+. ++.. .+...-...|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678899999988877                    112334556        788888 8877 6653233457788888


Q ss_pred             cEEEccCCcCCCccc-----------------------------------------------------------------
Q 040410           58 KELDFLFNKLSSEFS-----------------------------------------------------------------   72 (171)
Q Consensus        58 ~~L~l~~~~~~~~~~-----------------------------------------------------------------   72 (171)
                      +.++++.|.+....+                                                                 
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            888888775421100                                                                 


Q ss_pred             ------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCc-eEecccCc
Q 040410           73 ------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE-VLAINKCN  132 (171)
Q Consensus        73 ------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~-~L~l~~n~  132 (171)
                                        + +|+++++.+|++...-...|..+.+|+.+++..| +..-.+..|.++.+|+ .+.++. .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                              3 4666666666666444456777777777777776 4422335667777777 777776 4


Q ss_pred             cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      +...-+.+|..+++|+.+++..|.+..--+..|..+++|
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            443334678888888888888887765444566666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=2.8e-13  Score=106.56  Aligned_cols=155  Identities=18%  Similarity=0.199  Sum_probs=105.5

Q ss_pred             cCCCCcEEEeec-----------ccccCCC-CCccCCcchhhh-hcCCCccCCcCCccCCC-CCCCcEEEcc----CCcC
Q 040410            6 KKKQHTYVRLQA-----------KHYTGEL-PFLSGNLRSLKE-DLSKNNSSGELPTSIGN-LFPLKELDFL----FNKL   67 (171)
Q Consensus         6 ~l~~L~~L~L~~-----------~~~~~~~-~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~~   67 (171)
                      .+++|++|++++           +.+++.. +.....+++|+. ++..+.+++..+..+.. +++|+.|++.    .+.+
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            456677777762           3343221 111234667777 77666666444444444 7788888885    5566


Q ss_pred             CCc-----cc-----c-ccceEeccccc--ccccChhhhhc-CcCCcEEEcccccccc-cccccccCCCCCceEecccCc
Q 040410           68 SSE-----FS-----C-SLKRLFLVSCN--FWEKVPHSINN-FARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCN  132 (171)
Q Consensus        68 ~~~-----~~-----~-~L~~L~l~~~~--~~~~~~~~~~~-l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~  132 (171)
                      ++.     ++     + +|++|+++.|.  +++.....++. +++|+.|++++|.+++ .++..+..+++|+.|++++|.
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            642     22     6 88899887543  55555555544 7889999999998875 345556788999999999999


Q ss_pred             cchh-hhHHhhccccCceEecccCccccc
Q 040410          133 FFNR-ILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus       133 ~~~~-~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      +++. ++.....+++|++|++++|.+++.
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            8755 445567789999999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.30  E-value=2.3e-13  Score=107.00  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             CcEEEeeccc-ccC-CCCCccCCcchhhh-hcCCCccCCc----CCccCCCCCCCcEEEccCCcCCC----ccc-----c
Q 040410           10 HTYVRLQAKH-YTG-ELPFLSGNLRSLKE-DLSKNNSSGE----LPTSIGNLFPLKELDFLFNKLSS----EFS-----C   73 (171)
Q Consensus        10 L~~L~L~~~~-~~~-~~~~~~~~l~~L~~-~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~-----~   73 (171)
                      |++|++++|. ++. .++.....+++|++ ++++|.+.+.    ++..+..+++|++|++++|.+++    .++     +
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666654 111 01112224556666 6666655422    12223345566666666665541    111     4


Q ss_pred             -ccceEecccccccccChhhhhcCcCCcEEEcc
Q 040410           74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLV  105 (171)
Q Consensus        74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  105 (171)
                       +|++|++++|.+.+ ++..+..+++|+.++++
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence             56666666655542 44444445555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.4e-11  Score=91.10  Aligned_cols=102  Identities=18%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             EEeecc-cccCCCCCccCCcchhhh-hcCC-CccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccC
Q 040410           13 VRLQAK-HYTGELPFLSGNLRSLKE-DLSK-NNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKV   89 (171)
Q Consensus        13 L~L~~~-~~~~~~~~~~~~l~~L~~-~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~   89 (171)
                      ++++++ .++. +|. +..+.+|++ ++++ |.+.+..+..|..+++|++|+|++|.                  +.+..
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~------------------l~~~~   72 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG------------------LRFVA   72 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC------------------CCEEC
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc------------------cceeC
Confidence            455554 4444 444 555555555 5553 55543223345555555555555555                  44566


Q ss_pred             hhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch
Q 040410           90 PHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN  135 (171)
Q Consensus        90 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  135 (171)
                      |..|+.+++|+.|++++|.+. .+|..+.....|+.|++.+|.+..
T Consensus        73 ~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           73 PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             HHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEEeeCCCccC
Confidence            778889999999999999998 455444333349999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=4.4e-11  Score=88.40  Aligned_cols=101  Identities=15%  Similarity=0.052  Sum_probs=69.1

Q ss_pred             hcCCC-ccCCcCCccCCCCCCCcEEEccC-CcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccccccccc
Q 040410           37 DLSKN-NSSGELPTSIGNLFPLKELDFLF-NKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL  114 (171)
Q Consensus        37 ~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  114 (171)
                      +.+++ .+. .+|. +..+++|++|++++ |.+.                  +..+..|+.+++|+.|++++|.+.+..|
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ------------------HLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC------------------EECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC------------------CcChhHhccccCCCEEECCCCccceeCH
Confidence            55555 665 5777 77777777777775 6655                  2334567777778888888887776666


Q ss_pred             ccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410          115 ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       115 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ..|+++++|++|++++|.+.+..+..+..++ |++|++.+|.+.
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6777778888888888877753333444444 778888777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=1.5e-12  Score=102.45  Aligned_cols=36  Identities=19%  Similarity=0.077  Sum_probs=15.0

Q ss_pred             CCCCceEecccCccchhhh-HHhhccccCceEecccC
Q 040410          120 LKSLEVLAINKCNFFNRIL-FLLRNLIQLIILHLSQN  155 (171)
Q Consensus       120 l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n  155 (171)
                      +++|++|++++|.+.+... ..+..+++|++|++++|
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            3444444444444332211 12334444555554444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=5.1e-12  Score=94.60  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             chhhh-hcCCCccCCcCCcc----CC-CCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhh----
Q 040410           32 RSLKE-DLSKNNSSGELPTS----IG-NLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSIN----   94 (171)
Q Consensus        32 ~~L~~-~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~----   94 (171)
                      +.++. ++++|.++......    +. ..++|+.|++++|.++....      + ++++|++++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56778 88999886332222    22 23689999999999875432      5 899999999999765444442    


Q ss_pred             -cCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh----hhHHhhccccCceEecccCcccc
Q 040410           95 -NFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        95 -~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                       ..++|++|++++|.+...    ++..+...++|++|++++|.+...    ++..+...++|++|++++|.+..
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence             357899999999998753    445557789999999999998753    35566778899999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=2.9e-12  Score=100.76  Aligned_cols=84  Identities=24%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             ccceEecccccccccChhhhhc-CcCCcEEEcccccccccccccc-cCCCCCceEecccCccchhhhH-HhhccccCceE
Q 040410           74 SLKRLFLVSCNFWEKVPHSINN-FARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNRILF-LLRNLIQLIIL  150 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L  150 (171)
                      +|+.|++++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL  511 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence            677777755 454444444444 6778888888777765545444 4577788888888877544333 33457778888


Q ss_pred             ecccCccc
Q 040410          151 HLSQNSFR  158 (171)
Q Consensus       151 ~l~~n~~~  158 (171)
                      ++++|.+.
T Consensus       512 ~l~~~~~~  519 (594)
T 2p1m_B          512 WMSSCSVS  519 (594)
T ss_dssp             EEESSCCB
T ss_pred             eeeCCCCC
Confidence            88887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=5.4e-10  Score=82.10  Aligned_cols=96  Identities=13%  Similarity=-0.014  Sum_probs=78.2

Q ss_pred             CCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCc-EEEcccccccccccccccCCCCCceE
Q 040410           54 LFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQ-WYDLVFNKFSGELLASTKNLKSLEVL  126 (171)
Q Consensus        54 l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~L  126 (171)
                      +++|+.++++.|.+....+     | +|+++.+..| +...-+..|..+.+|+ .+.+.. .+..-.+..|.++.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6789999999988773322     7 9999999988 6656667899999999 999988 5653345788999999999


Q ss_pred             ecccCccchhhhHHhhccccCceEe
Q 040410          127 AINKCNFFNRILFLLRNLIQLIILH  151 (171)
Q Consensus       127 ~l~~n~~~~~~~~~~~~~~~L~~L~  151 (171)
                      ++..|.+...-+.+|.++++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            9999988865556899999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=4.6e-10  Score=83.68  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             cccCCCCcEEEeecccccC---------CCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-
Q 040410            4 QAKKKQHTYVRLQAKHYTG---------ELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-   72 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~---------~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-   72 (171)
                      +.++++|+.|.+.......         .+...+..+++|+. .+++|.-. .+++ + .+++|++|++..|.+..... 
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            4567899999886543211         12233456788999 99887422 3444 4 38899999999888764321 


Q ss_pred             ------c-ccceEeccc--cccccc-----Chhhh--hcCcCCcEEEccccccccccccccc---CCCCCceEecccCcc
Q 040410           73 ------C-SLKRLFLVS--CNFWEK-----VPHSI--NNFARLQWYDLVFNKFSGELLASTK---NLKSLEVLAINKCNF  133 (171)
Q Consensus        73 ------~-~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~---~l~~L~~L~l~~n~~  133 (171)
                            + +|+.|.+..  +...+.     +...+  +.+++|+.|++.+|.+.+..+..+.   .+++|++|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence                  5 788888753  221111     11122  3468999999999888755444443   478999999999988


Q ss_pred             chhh----hHHhhccccCceEecccCcccc
Q 040410          134 FNRI----LFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       134 ~~~~----~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      .+..    +..+..+++|+.|++++|.+..
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            7643    3334567889999999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=1.8e-09  Score=73.06  Aligned_cols=109  Identities=17%  Similarity=0.089  Sum_probs=80.3

Q ss_pred             cCCCCCCCcEEEccCC-cCCCccc---------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc--
Q 040410           50 SIGNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE--  112 (171)
Q Consensus        50 ~~~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~--  112 (171)
                      .+...+.|++|++++| .+.....         . ++++|++++|.+.+.    +...+...++|++|++++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455678888888888 7764321         3 688888888888643    334455567899999999998764  


Q ss_pred             --ccccccCCCCCceEec--ccCccchh----hhHHhhccccCceEecccCccc
Q 040410          113 --LLASTKNLKSLEVLAI--NKCNFFNR----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       113 --~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                        +.+.+...++|++|++  ++|.+..+    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              4556677789999999  88988764    3445556688999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=1.9e-09  Score=80.40  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCC--CCCCCcEEEccC--CcCCCc---------
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIG--NLFPLKELDFLF--NKLSSE---------   70 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~--~l~~L~~L~l~~--~~~~~~---------   70 (171)
                      ..+++|+.|++++|.-. .++. + .+++|++ ++..|.+.......+.  .+|+|+.|+++.  +...+.         
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            45789999999987421 2333 3 3789999 9988877533222333  689999999853  211111         


Q ss_pred             cc---c-ccceEecccccccccChhhhh---cCcCCcEEEcccccccccc----cccccCCCCCceEecccCccchhhhH
Q 040410           71 FS---C-SLKRLFLVSCNFWEKVPHSIN---NFARLQWYDLVFNKFSGEL----LASTKNLKSLEVLAINKCNFFNRILF  139 (171)
Q Consensus        71 ~~---~-~L~~L~l~~~~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~  139 (171)
                      +.   + +|++|++.+|.+.+..+..+.   .+++|++|+++.|.+.+..    +..+..+++|+.|++++|.++.....
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            11   5 899999999988754444443   5789999999999988643    44445678999999999998866555


Q ss_pred             HhhccccCceEecccCc
Q 040410          140 LLRNLIQLIILHLSQNS  156 (171)
Q Consensus       140 ~~~~~~~L~~L~l~~n~  156 (171)
                      .+...- ...++++.+.
T Consensus       326 ~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC-CSEEECCSBC
T ss_pred             HHHHHc-CCEEEecCCc
Confidence            555421 3568888776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.68  E-value=1.4e-07  Score=71.26  Aligned_cols=82  Identities=9%  Similarity=0.011  Sum_probs=41.8

Q ss_pred             ccceEeccccccc-----ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCc
Q 040410           74 SLKRLFLVSCNFW-----EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI  148 (171)
Q Consensus        74 ~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  148 (171)
                      +|+.+.+.++...     ......|..+++|+.+.+.. .+..-....|.++.+|+.+.+..+ +...-..+|.++ +|+
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence            4555555444332     12233455555555555553 233122244555666666666444 332223456666 777


Q ss_pred             eEecccCccc
Q 040410          149 ILHLSQNSFR  158 (171)
Q Consensus       149 ~L~l~~n~~~  158 (171)
                      .+++.+|...
T Consensus       349 ~l~l~~n~~~  358 (401)
T 4fdw_A          349 EVKVEGTTPP  358 (401)
T ss_dssp             EEEECCSSCC
T ss_pred             EEEEcCCCCc
Confidence            7777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=4e-08  Score=65.68  Aligned_cols=76  Identities=8%  Similarity=0.136  Sum_probs=33.1

Q ss_pred             CCcEEEccCCcCCCccc-----c-ccceEeccccc-ccccChhhhhcC----cCCcEEEccccc-ccccccccccCCCCC
Q 040410           56 PLKELDFLFNKLSSEFS-----C-SLKRLFLVSCN-FWEKVPHSINNF----ARLQWYDLVFNK-FSGELLASTKNLKSL  123 (171)
Q Consensus        56 ~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~~~~~~~l~~L  123 (171)
                      +|+.||+++|.++...-     + +|++|++++|. +++..-..+..+    ++|++|++++|. +++..-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666666665543211     3 44444444442 333333333332    234444444432 433333334444444


Q ss_pred             ceEecccC
Q 040410          124 EVLAINKC  131 (171)
Q Consensus       124 ~~L~l~~n  131 (171)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.60  E-value=3.8e-07  Score=68.85  Aligned_cols=80  Identities=11%  Similarity=-0.049  Sum_probs=42.4

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEccccccc-----ccccccccCCCCCceEecccCccchhhhHHhhccccCc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS-----GELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI  148 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~  148 (171)
                      +|+.+.+. +++...-...|..+++|+.+.+.++.+.     .-....|.++.+|+.+.+.. .+...-..+|.++++|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            34444442 2233233445566666777766655432     11224555666777777663 34322334566777777


Q ss_pred             eEecccC
Q 040410          149 ILHLSQN  155 (171)
Q Consensus       149 ~L~l~~n  155 (171)
                      .+.+..+
T Consensus       327 ~l~lp~~  333 (401)
T 4fdw_A          327 QLTIPAN  333 (401)
T ss_dssp             EEEECTT
T ss_pred             EEEECcc
Confidence            7776544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=9.1e-09  Score=69.63  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=77.8

Q ss_pred             cCCcchhhh-hcCCC-ccCC----cCCccCCCCCCCcEEEccCCcCCCccc---------c-ccceEeccccccccc---
Q 040410           28 SGNLRSLKE-DLSKN-NSSG----ELPTSIGNLFPLKELDFLFNKLSSEFS---------C-SLKRLFLVSCNFWEK---   88 (171)
Q Consensus        28 ~~~l~~L~~-~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~---------~-~L~~L~l~~~~~~~~---   88 (171)
                      +...+.|++ ++++| .+..    .+...+...++|++|++++|.+.....         . +|++|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345566777 77777 6642    133445567788999999998864322         3 789999999988754   


Q ss_pred             -ChhhhhcCcCCcEEEc--ccccccccc----cccccCCCCCceEecccCccch
Q 040410           89 -VPHSINNFARLQWYDL--VFNKFSGEL----LASTKNLKSLEVLAINKCNFFN  135 (171)
Q Consensus        89 -~~~~~~~l~~L~~l~l--~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~  135 (171)
                       +...+...++|++|++  ++|.+....    .+.+...++|++|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             3445566788999999  889988654    3445566899999999998863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=9.9e-08  Score=68.10  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=40.0

Q ss_pred             ccceEecccccccc--cChhhhhcCcCCcEEEcccccccccccccccCCC--CCceEecccCccchhhh-------HHhh
Q 040410           74 SLKRLFLVSCNFWE--KVPHSINNFARLQWYDLVFNKFSGELLASTKNLK--SLEVLAINKCNFFNRIL-------FLLR  142 (171)
Q Consensus        74 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~~~~  142 (171)
                      +|++|++++|++.+  .++..+..+++|+.|++++|.+.+.  ..+..++  +|+.|++.+|.+.+.+|       ..+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            56666666666654  2334455566666666666665532  2233333  56666666666554322       2344


Q ss_pred             ccccCceEe
Q 040410          143 NLIQLIILH  151 (171)
Q Consensus       143 ~~~~L~~L~  151 (171)
                      .+++|+.||
T Consensus       249 ~~P~L~~LD  257 (267)
T 3rw6_A          249 RFPKLLRLD  257 (267)
T ss_dssp             HCTTCCEES
T ss_pred             HCcccCeEC
Confidence            555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=5.7e-07  Score=64.19  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             hcCcCCcEEEcccccccc--cccccccCCCCCceEecccCccchhhhHHhhccc--cCceEecccCccccccC
Q 040410           94 NNFARLQWYDLVFNKFSG--ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLI--QLIILHLSQNSFRGRIK  162 (171)
Q Consensus        94 ~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~p  162 (171)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+.+.  ..+..++  +|++|++++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            568899999999999986  5567777899999999999999854  3345555  89999999999987665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=3.6e-07  Score=61.10  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=69.7

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEccccc-ccccccccccCC----CCCceEecccCc-cchhhhHHhhccccC
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNK-FSGELLASTKNL----KSLEVLAINKCN-FFNRILFLLRNLIQL  147 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~L  147 (171)
                      .|++|++++|.+++..-..+..+++|++|++++|. +++..-..++.+    ++|++|++++|. ++..--..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            79999999999987766778889999999999985 776666777765    479999999985 776655678889999


Q ss_pred             ceEecccCc
Q 040410          148 IILHLSQNS  156 (171)
Q Consensus       148 ~~L~l~~n~  156 (171)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.92  E-value=1.6e-05  Score=54.01  Aligned_cols=107  Identities=19%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             CCCCCCcEEEccCC-cCCCccc---------c-ccceEecccccccccChh----hhhcCcCCcEEEcccccccccccc-
Q 040410           52 GNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCNFWEKVPH----SINNFARLQWYDLVFNKFSGELLA-  115 (171)
Q Consensus        52 ~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~~~~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~-  115 (171)
                      ..-+.|+.|+++++ .+.....         - .|+.|++++|.+.+....    .+..-+.|++|+++.|.+.+.... 
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34568899999885 6653221         2 789999999998754333    344557899999999999865444 


Q ss_pred             ---cccCCCCCceEecccC---ccch----hhhHHhhccccCceEecccCccc
Q 040410          116 ---STKNLKSLEVLAINKC---NFFN----RILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       116 ---~~~~l~~L~~L~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                         .+...+.|+.|++++|   .+..    .+..++..-++|++|+++.|...
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               4456678999999865   3343    24455666688999999887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.44  E-value=0.00072  Score=50.62  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=68.6

Q ss_pred             cCCCCCCCcEEEccCCcCCCc-cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceE
Q 040410           50 SIGNLFPLKELDFLFNKLSSE-FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVL  126 (171)
Q Consensus        50 ~~~~l~~L~~L~l~~~~~~~~-~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L  126 (171)
                      .+.....++.+......+... +. + +|+.+.+..+ +...-...|..+.+|+.+++..+ +..-....|.++.+|+.+
T Consensus       271 ~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             TTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence            344555555555544432211 11 5 7777776544 44334456777888888888644 432223567788889998


Q ss_pred             ecccCccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410          127 AINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK  169 (171)
Q Consensus       127 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~  169 (171)
                      .+..+ +...-..+|..+++|+.+++..+--  .+...|..++
T Consensus       349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~--~~~~~F~~c~  388 (394)
T 4fs7_A          349 NFPLS-LRKIGANAFQGCINLKKVELPKRLE--QYRYDFEDTT  388 (394)
T ss_dssp             CCCTT-CCEECTTTBTTCTTCCEEEEEGGGG--GGGGGBCTTC
T ss_pred             EECcc-ccEehHHHhhCCCCCCEEEECCCCE--EhhheecCCC
Confidence            88766 4433345788888999888876532  2233455444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=0.00018  Score=48.87  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             ccceEecccc-ccccc----ChhhhhcCcCCcEEEccccccccccccccc----CCCCCceEecccCccchhhh----HH
Q 040410           74 SLKRLFLVSC-NFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTK----NLKSLEVLAINKCNFFNRIL----FL  140 (171)
Q Consensus        74 ~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~----~~  140 (171)
                      .|++|+++++ .+.+.    +.+.+..-+.|+.|++++|.+.+.....++    ..+.|++|+++.|.+...-.    .+
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            6999999985 77643    344555667899999999999865555444    66899999999999986533    44


Q ss_pred             hhccccCceEecccC
Q 040410          141 LRNLIQLIILHLSQN  155 (171)
Q Consensus       141 ~~~~~~L~~L~l~~n  155 (171)
                      +..-+.|++|++++|
T Consensus       122 L~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTTTCCCSEEECCCC
T ss_pred             HhhCCceeEEECCCC
Confidence            555577999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.09  E-value=0.0034  Score=46.94  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                      .+..+.+|+.+.+..+ +...    +. | +|+.+.+..+ +...-..+|..+.+|+.+.+..+ +..-....|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4667889999988765 3211    22 7 8999988654 55444567888999999999766 442334678899999


Q ss_pred             ceEecccCccchhhhHHhhccccCceE
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIIL  150 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L  150 (171)
                      +.+.++.+.-  .+..+|.++++|+.+
T Consensus       369 ~~i~lp~~~~--~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKRLE--QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGGGG--GGGGGBCTTCEEEEE
T ss_pred             CEEEECCCCE--EhhheecCCCCCcEE
Confidence            9999976532  334567788877764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.80  E-value=0.0019  Score=40.74  Aligned_cols=56  Identities=11%  Similarity=0.014  Sum_probs=39.4

Q ss_pred             ceEeccccccc-ccChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccc
Q 040410           76 KRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        76 ~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  134 (171)
                      ..++.++++++ ..+|..+.  .+++.|++++|.+. .+| ..+..+.+|+.|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            34555666664 24554332  46899999999988 455 56678889999999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.79  E-value=0.0085  Score=44.39  Aligned_cols=102  Identities=12%  Similarity=0.064  Sum_probs=51.7

Q ss_pred             cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                      .+.....|+.+.+..+ +...    +. + +++.+.+..+ +.......|..+.+|+.+.+..+.+..-....|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3455666666666544 2111    11 4 5555555432 222223355566667776666555542223456666667


Q ss_pred             ceEecccCccchhhhHHhhccccCceEeccc
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      +.+.+..+ +...-..+|.++++|+.+.+..
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            77666543 2212224566666666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.70  E-value=0.0084  Score=44.78  Aligned_cols=126  Identities=13%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             CCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCc
Q 040410           25 PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFA   97 (171)
Q Consensus        25 ~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~   97 (171)
                      ...|.....|+. .+..+... .-...|..+++|+.+.+... +...    +. | +|+.+.+..+ ++..-...|..+.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            345556666666 66544322 22334667788888887643 2211    11 5 6777776543 3333445677777


Q ss_pred             CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +|+.+.+..+ +..-....|.++.+|+.+++.++...   -..+..+.+|+.+.+..+.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            8888877543 33222356777788888887775432   13455666777776655443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.47  E-value=0.0062  Score=38.37  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=22.3

Q ss_pred             ccceEecccccccccChhhhhcCcCCcEEEccccccc
Q 040410           74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS  110 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~  110 (171)
                      ++++|++++|+++..-+..|..+++|+.|++.+|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3444444444444333445667778888888887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.07  E-value=0.023  Score=42.36  Aligned_cols=106  Identities=16%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             ccCCCCCCCcEEEccCCcCC---Cccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           49 TSIGNLFPLKELDFLFNKLS---SEFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        49 ~~~~~l~~L~~L~l~~~~~~---~~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                      ..|..+..|+.+.+..+...   +.+. + .|+.+.+.. .+...-...|..+.+|+.+.+..+ +..-....|.++.+|
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            35777889999998765432   1111 6 888888863 344344557888899999999764 332224578899999


Q ss_pred             ceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +.+.+..+ +...-..+|.++++|+.+++.++..
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            99999765 3323346899999999999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.87  E-value=0.077  Score=39.18  Aligned_cols=105  Identities=9%  Similarity=0.028  Sum_probs=71.4

Q ss_pred             ccCCCCCCCcEEEccCCcCC-C--ccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410           49 TSIGNLFPLKELDFLFNKLS-S--EFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL  123 (171)
Q Consensus        49 ~~~~~l~~L~~L~l~~~~~~-~--~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L  123 (171)
                      ..+....+++.+.+..+--. +  .+- + .|+.+.+..+ +...-...+..+.+|+.+.+..+ +..-....+.++.+|
T Consensus       211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            34556778888887654211 0  111 6 7888887654 44344456777888999988654 332223567788999


Q ss_pred             ceEecccCccchhhhHHhhccccCceEecccC
Q 040410          124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus       124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      +.+.+..+.+...-..+|.++.+|+.+.+..+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            99999888776444567999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 23  ELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKL--SSEFSCSLKRLFL 80
           ++  L+        DL+ N  S   P  +  L  L EL    N++   S  +       L
Sbjct: 233 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 81  VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL 140
                  +    I+N   L +  L FN  S   ++   +L  L+ L           +  
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVSS 346

Query: 141 LRNLIQLIILHLSQNSFRGRIKL 163
           L NL  +  L    N       L
Sbjct: 347 LANLTNINWLSAGHNQISDLTPL 369

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 8   KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK 66
           K    + L+     G LP     L+ L   ++S NN  GE+P   GNL       +  NK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 67  LSSEF---SCS 74
                   +C+
Sbjct: 303 CLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 7e-04
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 37  DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF--SCSLKRL 78
           DL  N   G LP  +  L  L  L+  FN L  E     +L+R 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 80  LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNF 133
           L +   +  +P  +     L   ++ FN   GE +    NL+  +V A      
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 29/158 (18%), Positives = 43/158 (27%), Gaps = 3/158 (1%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS 69
             + LQ    T        NL++L    L  N  S   P +   L  L+ L    N+L  
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 70  --EFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127
             E      +   V  N   KV  S+ N         +               + ++ L+
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Query: 128 INKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDF 165
             +    N           L  LHL  N          
Sbjct: 154 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 9/154 (5%)

Query: 11  TYVRLQAKHYTGELPFLSGNLRSLKEDLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE 70
             V+            L  +   L  DL  N  +        NL  L  L  + NK+S  
Sbjct: 13  RVVQCSDLGLEKVPKDLPPDTALL--DLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 71  FSC------SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE 124
                     L+RL+L      E           L+ ++    K    +      +  +E
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 125 VLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158
            L  N            + + +L  + ++  +  
Sbjct: 131 -LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.12
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.4e-22  Score=146.76  Aligned_cols=166  Identities=19%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             ccccCCCCcEEEeec-ccccCCCCCccCCcchhhh-hcCCCccCC------------------------cCCccCCCCCC
Q 040410            3 DQAKKKQHTYVRLQA-KHYTGELPFLSGNLRSLKE-DLSKNNSSG------------------------ELPTSIGNLFP   56 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~-~l~~~~~~~------------------------~~~~~~~~l~~   56 (171)
                      .++++++|++|+|++ |.+++.+|..++++++|++ ++++|.+.+                        .+|..+..+++
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            566777777777765 5666667777777777777 777665543                        34455555666


Q ss_pred             CcEEEccCCcCCCccc-----c-c-cceEecccc-----------------------cccccChhhhhcCcCCcEEEccc
Q 040410           57 LKELDFLFNKLSSEFS-----C-S-LKRLFLVSC-----------------------NFWEKVPHSINNFARLQWYDLVF  106 (171)
Q Consensus        57 L~~L~l~~~~~~~~~~-----~-~-L~~L~l~~~-----------------------~~~~~~~~~~~~l~~L~~l~l~~  106 (171)
                      ++++++++|.+.+.+|     + . ++.+.++.|                       ...+..|..++.+++++.+++.+
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666666666554444     1 1 233333333                       33333444455556777777777


Q ss_pred             ccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410          107 NKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      +.+.+.. ..++.+++++.|++++|.+++.+|..++++++|++|++++|++.|.+|. ++.+++
T Consensus       231 ~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         231 NSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             SEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             ccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence            7776544 4578889999999999999988999999999999999999999988885 344443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=6.5e-22  Score=143.13  Aligned_cols=162  Identities=20%  Similarity=0.188  Sum_probs=130.9

Q ss_pred             CCcEEEeecccccC--CCCCccCCcchhhh-hcCC-CccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410            9 QHTYVRLQAKHYTG--ELPFLSGNLRSLKE-DLSK-NNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL   78 (171)
Q Consensus         9 ~L~~L~L~~~~~~~--~~~~~~~~l~~L~~-~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L   78 (171)
                      +++.|+|+++.+++  .+|..++++++|++ ++++ |.+.+.+|+.++++++|++|++++|++.+..+     + .++.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            58999999999987  47889999999999 9986 78888899999999999999999999887655     4 78888


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC-ceEecccCc-------------------------
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL-EVLAINKCN-------------------------  132 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~-------------------------  132 (171)
                      ++..|.+.+..|..++.++.++.+++++|.+.+.+|..++.+.++ +.++++.|.                         
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888887888888888888888888887776666666555543 455555443                         


Q ss_pred             ----------------------cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410          133 ----------------------FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       133 ----------------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                                            +.+.+ ..+..+++++.|++++|++.+.+|.+++.+++|
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L  270 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCC
Confidence                                  33223 346667889999999999999999999988775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-21  Score=137.55  Aligned_cols=160  Identities=22%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLV   81 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~   81 (171)
                      +++++|+|++|.+++..+..|..+++|++ ++++|.++ .++. +..+++|++|++++|++....+    + ++++|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccccccccccccccccccccc
Confidence            36777888888777655566777777777 77777776 4543 5667777777777777764433    4 66777777


Q ss_pred             cccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccccc
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  161 (171)
                      +|.+....+..+..+.+++.+++.+|.+..-.+..+..+++++.+++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            76666544555556666666666666665333344455666666666666666544455666666666666666665 55


Q ss_pred             CcccccccC
Q 040410          162 KLDFELSKE  170 (171)
Q Consensus       162 p~~~~~l~~  170 (171)
                      |..+..+++
T Consensus       188 p~~~~~~~~  196 (266)
T d1p9ag_         188 PKGFFGSHL  196 (266)
T ss_dssp             CTTTTTTCC
T ss_pred             ChhHCCCCC
Confidence            655554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.9e-20  Score=130.99  Aligned_cols=152  Identities=23%  Similarity=0.230  Sum_probs=133.5

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL   75 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L   75 (171)
                      .|.++++|++|+|++|.++. ++ .++.+++|++ ++++|.+. ..+..+..+++|+.++++++.+....+     + ++
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             Hhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccccccccceeecccccccccc
Confidence            57789999999999999986 33 4578999999 99999998 567789999999999999998875444     5 89


Q ss_pred             ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410           76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ++|.+.+|.+....+..+..+++++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus       127 ~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence            99999999998666667788999999999999999666677899999999999999998 78888889999999999999


Q ss_pred             ccc
Q 040410          156 SFR  158 (171)
Q Consensus       156 ~~~  158 (171)
                      ++.
T Consensus       206 p~~  208 (266)
T d1p9ag_         206 PWL  208 (266)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-19  Score=129.39  Aligned_cols=162  Identities=17%  Similarity=0.085  Sum_probs=106.3

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccC-------------------------CcCCccCCCCCCCcEEEc
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSS-------------------------GELPTSIGNLFPLKELDF   62 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~-------------------------~~~~~~~~~l~~L~~L~l   62 (171)
                      ++++|+|++|.++...+..|..+++|++ ++++|.+.                         ...+..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            5677777777776655556777777777 77766542                         111444666778888888


Q ss_pred             cCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchh
Q 040410           63 LFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNR  136 (171)
Q Consensus        63 ~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  136 (171)
                      ++|.+....+     + +++.+++.+|.+.+..+..+..+++|++|++++|.+.+-.+..+.++++|+.+++++|.+.+.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            8777654333     3 677777777777654455666667777777777777644445666777777777777777665


Q ss_pred             hhHHhhccccCceEecccCccccccCcccccccC
Q 040410          137 ILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE  170 (171)
Q Consensus       137 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~  170 (171)
                      .|..+..++++++|++++|.+.+..+..|..+++
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccc
Confidence            5666777777777777777776554555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=124.38  Aligned_cols=158  Identities=20%  Similarity=0.073  Sum_probs=122.3

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----------------
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----------------   72 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------------   72 (171)
                      ..++.+++.++. +|..+.  ..+++ ++++|.++...+..|.++++|+++++++|.+....+                 
T Consensus        14 ~~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345677777765 565443  56788 999999984334569999999999999987652211                 


Q ss_pred             -------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410           73 -------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL  138 (171)
Q Consensus        73 -------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  138 (171)
                                   + +|++|+++.|.+....+..+....+|+.+++.+|.+.+..+..++.+++|+.|++++|.+.+..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence                         5 78888888888876566677778888999999998885445677888899999999999886666


Q ss_pred             HHhhccccCceEecccCccccccCcccccccCC
Q 040410          139 FLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF  171 (171)
Q Consensus       139 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L  171 (171)
                      .++..+++|+++++++|.+.+..|..|..+++|
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            778889999999999999988778888877654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1e-17  Score=120.34  Aligned_cols=150  Identities=22%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc----------------
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE----------------   70 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------   70 (171)
                      +++++|+|++|.++...+..|..+++|++ ++++|.+....|..|..+++|+++++++|+++..                
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            46777777777777644456777777777 7777777644455677777777777776654311                


Q ss_pred             ------------------------------------------------------cc---c-ccceEecccccccccChhh
Q 040410           71 ------------------------------------------------------FS---C-SLKRLFLVSCNFWEKVPHS   92 (171)
Q Consensus        71 ------------------------------------------------------~~---~-~L~~L~l~~~~~~~~~~~~   92 (171)
                                                                            ++   . ++++|++.+|...+..+..
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhH
Confidence                                                                  00   2 3444444444444444455


Q ss_pred             hhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           93 INNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        93 ~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      +..++.++.|++++|.+.+..+..+.++++|++|++++|.+. .+|.++.++++|++|++++|+++
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            555566666666666666444555666666777777766665 45666666667777777776665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.2e-17  Score=113.28  Aligned_cols=155  Identities=19%  Similarity=0.215  Sum_probs=127.5

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEe
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLF   79 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~   79 (171)
                      ..+.++++|+++++.++..  ..++.+++|++ ++++|.++ .+++ +..+++|++|++++|.+....+   + .++.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-ccCCccccccccccccccccccccccccccccc
Confidence            4578999999999999862  35788999999 99999998 4554 8999999999999998875444   6 899999


Q ss_pred             cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410           80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      +++|....  ...+..+++|+.+++++|.+. .+ +.+..+++++.|++.+|.+.+ ++ .++++++|++|++++|++..
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            99998874  235778999999999999886 44 458899999999999999985 44 48899999999999999974


Q ss_pred             ccCcccccccCC
Q 040410          160 RIKLDFELSKEF  171 (171)
Q Consensus       160 ~~p~~~~~l~~L  171 (171)
                       ++ .++.+++|
T Consensus       187 -i~-~l~~L~~L  196 (199)
T d2omxa2         187 -IS-VLAKLTNL  196 (199)
T ss_dssp             -CG-GGGGCTTC
T ss_pred             -Cc-cccCCCCC
Confidence             43 46666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=4e-17  Score=117.21  Aligned_cols=153  Identities=22%  Similarity=0.116  Sum_probs=114.6

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc--------------------------------
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT--------------------------------   49 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~--------------------------------   49 (171)
                      +|.++++|++|++++|.+....|..+..+++|++ ++++|.++ .+|.                                
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~  128 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV  128 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             HhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccc
Confidence            4667778888888888877766667777777777 77776432 1111                                


Q ss_pred             ----------------cCCC---------------------CCCCcEEEccCCcCCCccc-----c-ccceEeccccccc
Q 040410           50 ----------------SIGN---------------------LFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFW   86 (171)
Q Consensus        50 ----------------~~~~---------------------l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~   86 (171)
                                      .+..                     +++|+.|++.+|......+     + .+++|++++|.+.
T Consensus       129 l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence                            1111                     3456666666666554444     5 7899999999999


Q ss_pred             ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhH-------HhhccccCceEecccCccc
Q 040410           87 EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF-------LLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        87 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~~~L~~L~l~~n~~~  158 (171)
                      +..+..+..+++|++|++++|.+. .+|.++..+++|++|++++|.++. ++.       ......+|+.|++++|++.
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            877888899999999999999998 789999999999999999999874 332       2345678999999999985

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.2e-17  Score=112.81  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=118.4

Q ss_pred             cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEec
Q 040410            6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFL   80 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l   80 (171)
                      .+.+|+.|++++|.++..  ..+..+++|++ ++++|.++ .+++ +..+++|++|++++|+++....   + +++.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc-cccCcccccccccccccccccccccccccccccc
Confidence            466788899999988763  24778889999 99999887 4553 6788999999999998875332   5 8899999


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      .+|.+.. + ..+..++.++.+++++|.+.+  +..+..+++|+.+++++|.+.+ ++. +.++++|++|++++|.+. .
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-B
T ss_pred             ccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-C
Confidence            8888763 3 357788889999998888763  3456778889999999998874 443 788889999999999887 3


Q ss_pred             cCcccccccCC
Q 040410          161 IKLDFELSKEF  171 (171)
Q Consensus       161 ~p~~~~~l~~L  171 (171)
                      ++ .+..+++|
T Consensus       193 l~-~l~~l~~L  202 (210)
T d1h6ta2         193 LR-ALAGLKNL  202 (210)
T ss_dssp             CG-GGTTCTTC
T ss_pred             Ch-hhcCCCCC
Confidence            54 46666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7.2e-17  Score=111.38  Aligned_cols=157  Identities=20%  Similarity=0.236  Sum_probs=107.6

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR   77 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~   77 (171)
                      .+.++++|++|++++|.+++..  .+..+++++. ++++|.++ .++ .+..+++|+.++++++...+..+   . .++.
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhh
Confidence            4556666666666666665522  3566666666 66666654 333 35666777777776666554433   3 6667


Q ss_pred             EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410           78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus        78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +.+..+.+...  ..+...++|+.+++.+|.+...  ..++++++|+.|++++|.+.+ ++. +.++++|++|++++|++
T Consensus       134 l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         134 LYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCC
T ss_pred             hhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcC
Confidence            77766666532  2466778899999999988633  347889999999999999874 443 78999999999999998


Q ss_pred             ccccCcccccccCC
Q 040410          158 RGRIKLDFELSKEF  171 (171)
Q Consensus       158 ~~~~p~~~~~l~~L  171 (171)
                      +. ++ .+..+++|
T Consensus       208 t~-i~-~l~~l~~L  219 (227)
T d1h6ua2         208 SD-VS-PLANTSNL  219 (227)
T ss_dssp             CB-CG-GGTTCTTC
T ss_pred             CC-Cc-ccccCCCC
Confidence            74 44 25555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.7e-17  Score=111.18  Aligned_cols=143  Identities=22%  Similarity=0.228  Sum_probs=120.6

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|++|++++|.+++. + .++.+++|+. ++++|.++ .++ .+..+++|+.+++.+|.+....+   + .++
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~  137 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLE  137 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCC
T ss_pred             hhHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-ccccccccccccccccccccccccccccccc
Confidence            4577899999999999999873 3 4688999999 99999997 566 58899999999999998764333   5 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      ++++..|.+++  +..+..+++|+.+++++|.+. .++ .++++++|+.|++++|.++ .++ .+.++++|++|++++
T Consensus       138 ~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         138 SLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccc--ccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            99999999874  335778899999999999997 444 3889999999999999997 465 589999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.6e-17  Score=108.73  Aligned_cols=139  Identities=22%  Similarity=0.269  Sum_probs=116.9

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|++|++++|.+++..  .++.+++|++ ++++|.+. .++ .+..+++|+.++++++......+   + +++
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~  131 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLN  131 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc-ccccccccccccccccccccccccchhhhhH
Confidence            45778999999999999998743  3889999999 99999886 455 48899999999999998876544   6 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceE
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIIL  150 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  150 (171)
                      .+++++|++.. + ..+..+++++.+++.+|.+.+ ++ .++++++|++|++++|.+++ ++ .++++++|++|
T Consensus       132 ~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         132 RLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             Hhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            99999999873 3 368889999999999999873 44 48899999999999999874 54 47888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=7.5e-17  Score=108.70  Aligned_cols=152  Identities=18%  Similarity=0.072  Sum_probs=111.6

Q ss_pred             CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcC-CccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecc
Q 040410           10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGEL-PTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLV   81 (171)
Q Consensus        10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~   81 (171)
                      .++++.+++.++. +|..+.  +.+++ ++++|.++... +..|..+++|++|++++|.+....+     + ++++|+++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4678888888886 565543  67888 99999997544 4457889999999999998876554     5 89999999


Q ss_pred             cccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccccc
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI  161 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  161 (171)
                      +|++.+..+..|..+++|++|++++|.+..-.+..+..+++|+++++++|.+........ -...++.+.+..+.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCC
Confidence            999987777788999999999999999985556678899999999999998764322111 1122344445555554444


Q ss_pred             Cccc
Q 040410          162 KLDF  165 (171)
Q Consensus       162 p~~~  165 (171)
                      |..+
T Consensus       166 p~~l  169 (192)
T d1w8aa_         166 PSKV  169 (192)
T ss_dssp             STTT
T ss_pred             Chhh
Confidence            4433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.2e-16  Score=114.57  Aligned_cols=156  Identities=21%  Similarity=0.225  Sum_probs=111.2

Q ss_pred             cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410            4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL   78 (171)
Q Consensus         4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L   78 (171)
                      ....++|++|++++|.+++  .+.+..+++++. ++++|.++ .+++ +..+++|++++++++.+.+..+   + .++.+
T Consensus       215 ~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccC-CCCc-ccccccCCEeeccCcccCCCCccccccccccc
Confidence            3445667777777777665  235666777777 77777776 3332 6677788888888777765444   4 67777


Q ss_pred             ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      .+..|.+.+  ...+..+++++.+++++|.+.+ ++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus       291 ~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLED--ISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            777777764  2346777889999999998874 33 37788899999999998874 44 5888999999999999988


Q ss_pred             cccCcccccccCC
Q 040410          159 GRIKLDFELSKEF  171 (171)
Q Consensus       159 ~~~p~~~~~l~~L  171 (171)
                      +-.|  +..+++|
T Consensus       365 ~l~~--l~~l~~L  375 (384)
T d2omza2         365 DLTP--LANLTRI  375 (384)
T ss_dssp             BCGG--GTTCTTC
T ss_pred             CChh--hccCCCC
Confidence            5332  5555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.2e-16  Score=113.65  Aligned_cols=145  Identities=22%  Similarity=0.227  Sum_probs=122.6

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      +.+..+++|+.+++++|.+++..  .+..+++|++ +++++.+. .++ .+..++.++.+++..|.+.+...   + +++
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~  310 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NIS-PLAGLTALTNLELNENQLEDISPISNLKNLT  310 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCS
T ss_pred             chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCC-ccccccccccccccccccccccccchhcccC
Confidence            45678899999999999998733  4788899999 99999987 444 37889999999999999886433   5 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS  156 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  156 (171)
                      ++++++|++.+. + .+..+++|+.|++++|.++ .++ .++++++|++|++++|.+++. ++ +.++++|+.|++++|.
T Consensus       311 ~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l-~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         311 YLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDL-TP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             EEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEECCCEE
T ss_pred             eEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCC-hh-hccCCCCCEeeCCCCc
Confidence            999999999864 3 4788999999999999987 454 689999999999999999864 43 8899999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3e-16  Score=105.70  Aligned_cols=122  Identities=21%  Similarity=0.148  Sum_probs=106.6

Q ss_pred             hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410           35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF  106 (171)
Q Consensus        35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  106 (171)
                      ++ +.+++.++ .+|+.+.  +++++|++++|+++...+      + +|++|++++|.+....+..+..+++|+.|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45 78888887 7888663  689999999999976443      5 899999999999988888999999999999999


Q ss_pred             ccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410          107 NKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      |.+..-.+..|.++++|++|++++|.+++..+.+|..+++|+++++++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99995556788999999999999999997667789999999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=102.32  Aligned_cols=127  Identities=21%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecc
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLV   81 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~   81 (171)
                      .+.+...++.|+|++|.++. ++..+..+++|++ ++++|.+. .++ .+..+++|++|++++|.++             
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-------------   76 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-------------   76 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-------------
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-------------
Confidence            45566677777777777766 3444566777777 77777776 443 4667777777777777765             


Q ss_pred             cccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhh---hHHhhccccCceEe
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRI---LFLLRNLIQLIILH  151 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~  151 (171)
                           ...+..+..+++|++|++++|.+. .++  ..+..+++|+++++++|.+....   +..+..+++|++||
T Consensus        77 -----~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          77 -----RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             -----EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             -----CCCccccccccccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                 222334456777888888877776 333  35667778888888888765321   23467777888776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3e-15  Score=93.85  Aligned_cols=100  Identities=25%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccC
Q 040410           11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKV   89 (171)
Q Consensus        11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~   89 (171)
                      |+|+|++|.++. ++ .+..+++|++ ++++|.++ .+|+.+..+++|++|++++|.++                   .+
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-------------------~l   58 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-------------------NV   58 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-------------------CC
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-------------------cc
Confidence            467777777775 33 4677777777 77777776 56766777777777777777765                   23


Q ss_pred             hhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccc
Q 040410           90 PHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFF  134 (171)
Q Consensus        90 ~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~  134 (171)
                      + .++.+++|+++++++|.+.. ++  ..++.+++|+.+++++|.+.
T Consensus        59 ~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          59 D-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             C-ccccccccCeEECCCCccCC-CCCchhhcCCCCCCEEECCCCcCC
Confidence            3 35666677777777776652 22  34566666777777766654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.6e-14  Score=98.31  Aligned_cols=143  Identities=18%  Similarity=0.215  Sum_probs=118.5

Q ss_pred             cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410            2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK   76 (171)
Q Consensus         2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~   76 (171)
                      ..+..+++++++++++|.++.  ...++.+++|+. .++++... .. ..+...+.++.+.++.+.+....+   + +++
T Consensus        79 ~~l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~l~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~  154 (227)
T d1h6ua2          79 APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-DV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ  154 (227)
T ss_dssp             GGGTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccccc-cc-chhccccchhhhhchhhhhchhhhhccccccc
Confidence            357889999999999998875  346788999999 99998876 33 347788999999999998876555   5 899


Q ss_pred             eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410           77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ  154 (171)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  154 (171)
                      +|++.+|.+.+..  .++.+++|+.|++++|.+. .++ .++.+++|++|++++|.+++ ++. +.++++|++|++++
T Consensus       155 ~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         155 YLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             cccccccccccch--hhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            9999999887432  4788999999999999987 454 38899999999999999984 553 88999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.1e-14  Score=91.17  Aligned_cols=100  Identities=20%  Similarity=0.272  Sum_probs=75.6

Q ss_pred             hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccccccccccc
Q 040410           37 DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS  116 (171)
Q Consensus        37 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  116 (171)
                      ++++|.++ .++ .+..+++|++|++++|.+.                   .+|..++.+++|+.|++++|.+. .+| .
T Consensus         4 ~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-------------------~lp~~~~~l~~L~~L~l~~N~i~-~l~-~   60 (124)
T d1dcea3           4 HLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-------------------ALPPALAALRCLEVLQASDNALE-NVD-G   60 (124)
T ss_dssp             ECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-------------------CCCGGGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             EcCCCCCC-CCc-ccccCCCCCEEECCCCccC-------------------cchhhhhhhhccccccccccccc-ccC-c
Confidence            45555554 333 2555555555555555544                   57778999999999999999998 555 5


Q ss_pred             ccCCCCCceEecccCccchhh-hHHhhccccCceEecccCcccc
Q 040410          117 TKNLKSLEVLAINKCNFFNRI-LFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus       117 ~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                      ++.+++|+++++++|.+.... ...+..+++|+++++++|++.+
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            899999999999999997432 2468889999999999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.6e-15  Score=95.89  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccc
Q 040410           30 NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNK  108 (171)
Q Consensus        30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~  108 (171)
                      ...++++ ++++|.++ .++..+..+++|++|++++|.+.                   .+ ..+..+++|++|++++|.
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-------------------~l-~~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-------------------KL-DGFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-------------------EE-CCCCCCSSCCEEECCSSC
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-------------------cc-CCcccCcchhhhhccccc
Confidence            3444555 55555554 34443344555555555555543                   23 247788999999999999


Q ss_pred             ccccccc-cccCCCCCceEecccCccchhhh--HHhhccccCceEecccCccccccCc----ccccccCC
Q 040410          109 FSGELLA-STKNLKSLEVLAINKCNFFNRIL--FLLRNLIQLIILHLSQNSFRGRIKL----DFELSKEF  171 (171)
Q Consensus       109 ~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~p~----~~~~l~~L  171 (171)
                      +. .++. .+..+++|+.|++++|.+.. ++  ..+..+++|+++++++|.+.. .|.    .+..+|+|
T Consensus        75 i~-~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          75 IC-RIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV  141 (162)
T ss_dssp             CC-EECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred             cc-CCCccccccccccccceeccccccc-cccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCc
Confidence            98 4554 45678999999999999874 33  357889999999999999974 443    35555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-14  Score=98.27  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=85.6

Q ss_pred             CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccC-CcCCCccc-----c-ccceEe
Q 040410            9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLF-NKLSSEFS-----C-SLKRLF   79 (171)
Q Consensus         9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~-----~-~L~~L~   79 (171)
                      ++++|++++|.++...+..|.++++|++ ++++|.+...++. .|..+++++.+.+.. +.+....+     + ++++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            5666666666665533345566666666 6666654422222 233444444444332 22221111     2 344444


Q ss_pred             ccccc-------------------------ccccChhhhhcCc-CCcEEEcccccccccccccccCCCCCceE-ecccCc
Q 040410           80 LVSCN-------------------------FWEKVPHSINNFA-RLQWYDLVFNKFSGELLASTKNLKSLEVL-AINKCN  132 (171)
Q Consensus        80 l~~~~-------------------------~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L-~l~~n~  132 (171)
                      +.+|+                         +....+..+..++ .++.+++.+|.+. .++.......++..+ ++.+|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhccccccccc
Confidence            44443                         3322222333332 5667777777776 455444455555544 456666


Q ss_pred             cchhhh-HHhhccccCceEecccCccccccCc-ccccccC
Q 040410          133 FFNRIL-FLLRNLIQLIILHLSQNSFRGRIKL-DFELSKE  170 (171)
Q Consensus       133 ~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~-~~~~l~~  170 (171)
                      ++ .+| ..+.++++|++|++++|.+.. +|. .+..+++
T Consensus       189 l~-~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~  226 (242)
T d1xwdc1         189 LE-ELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKK  226 (242)
T ss_dssp             CC-CCCTTTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCE
T ss_pred             cc-cccHHHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcc
Confidence            66 455 457889999999999999984 443 4555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-14  Score=103.21  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=35.4

Q ss_pred             hcCcCCcEEEcccc-cccccccccccCCCCCceEecccC-ccchhhhHHhhccccCceEecccC
Q 040410           94 NNFARLQWYDLVFN-KFSGELLASTKNLKSLEVLAINKC-NFFNRILFLLRNLIQLIILHLSQN  155 (171)
Q Consensus        94 ~~l~~L~~l~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n  155 (171)
                      ..+++|++|++++| .+++..+..++++++|++|++++| .+++.....++++++|++|++.++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34556666666654 345455555666666666666664 344443444555666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-14  Score=101.75  Aligned_cols=166  Identities=17%  Similarity=0.116  Sum_probs=121.0

Q ss_pred             cCCCCcEEEeecccccCC-CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCc-CCCc-cc-----c-cc
Q 040410            6 KKKQHTYVRLQAKHYTGE-LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSE-FS-----C-SL   75 (171)
Q Consensus         6 ~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~-----~-~L   75 (171)
                      ....|++|++++|.+++. +...+..+++|++ ++++|.+.+..+..+..+++|++|++++|. ++.. +.     + +|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456799999999988653 3445678899999 999999876667778899999999999974 4422 11     6 89


Q ss_pred             ceEeccccc-cccc-Chhhhhc-CcCCcEEEcccc--ccccc-ccccccCCCCCceEecccCc-cchhhhHHhhccccCc
Q 040410           76 KRLFLVSCN-FWEK-VPHSINN-FARLQWYDLVFN--KFSGE-LLASTKNLKSLEVLAINKCN-FFNRILFLLRNLIQLI  148 (171)
Q Consensus        76 ~~L~l~~~~-~~~~-~~~~~~~-l~~L~~l~l~~n--~~~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~  148 (171)
                      ++|++++|. +++. ....+.. .++|+.|+++++  .+.+. +......+++|++|++++|. +++.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999874 4322 2233444 468999999875  34433 33334577899999999875 6666677788999999


Q ss_pred             eEecccC-ccccccCcccccccCC
Q 040410          149 ILHLSQN-SFRGRIKLDFELSKEF  171 (171)
Q Consensus       149 ~L~l~~n-~~~~~~p~~~~~l~~L  171 (171)
                      +|+++++ .+.+.....++.+++|
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EEECCCCCCCChHHHHHHhcCCCC
Confidence            9999995 5665545556666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.8e-12  Score=83.15  Aligned_cols=147  Identities=14%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCCcCCccCCCCCCCcEEEccCCcCCCccccccceEec
Q 040410            3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFL   80 (171)
Q Consensus         3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l   80 (171)
                      +.+.......++.+++.++. .|..+..++++++ ++.++. ++..-+..|.++++|+.|++++|+++            
T Consensus         3 ~~C~c~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~------------   69 (156)
T d2ifga3           3 DACCPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------------   69 (156)
T ss_dssp             SSSCCSSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC------------
T ss_pred             CCCCcCCCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC------------
Confidence            33444455555555555544 3445555556666 554443 44222234555666666666666554            


Q ss_pred             ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchh-hhHHhhccccCceEecccCcccc
Q 040410           81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRG  159 (171)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  159 (171)
                            ...+..|..+++|++|++++|.+. .+|.......+|+.|++++|.+.-. -...+..........+..+.+..
T Consensus        70 ------~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C  142 (156)
T d2ifga3          70 ------FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC  142 (156)
T ss_dssp             ------EECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCC
T ss_pred             ------CcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEE
Confidence                  455677888999999999999998 6776655666899999999987521 01122222222233334455554


Q ss_pred             ccCccccccc
Q 040410          160 RIKLDFELSK  169 (171)
Q Consensus       160 ~~p~~~~~l~  169 (171)
                      .-|..+..++
T Consensus       143 ~~p~~l~~~p  152 (156)
T d2ifga3         143 HGQGPLAHMP  152 (156)
T ss_dssp             SSSSCSSCCC
T ss_pred             CcChHHCcCC
Confidence            4555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=5.2e-15  Score=100.00  Aligned_cols=138  Identities=19%  Similarity=0.199  Sum_probs=105.2

Q ss_pred             CCcEEEeecccc-cCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-ccceEecc
Q 040410            9 QHTYVRLQAKHY-TGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLV   81 (171)
Q Consensus         9 ~L~~L~L~~~~~-~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~   81 (171)
                      ..+.+++.+..- ...++..++.+++|++ ++++|.++ .++ .+..+++|+.|++++|.+....+    + +|++|+++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            345566654321 1224567888999999 99999987 565 58889999999999999874322    4 79999999


Q ss_pred             cccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhhhH----------HhhccccCce
Q 040410           82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRILF----------LLRNLIQLII  149 (171)
Q Consensus        82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~----------~~~~~~~L~~  149 (171)
                      +|.++. + ..+..+++|+.|++++|.+. .++  ..+..+++|+.|++++|.+....+.          .+..+++|+.
T Consensus       102 ~N~i~~-l-~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         102 YNQIAS-L-SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEECCC-H-HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             cccccc-c-ccccccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            999984 3 45788899999999999987 444  4688999999999999987643221          2567889998


Q ss_pred             Ee
Q 040410          150 LH  151 (171)
Q Consensus       150 L~  151 (171)
                      ||
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            87

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.4e-14  Score=97.87  Aligned_cols=111  Identities=21%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             cCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCC
Q 040410           46 ELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLK  121 (171)
Q Consensus        46 ~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  121 (171)
                      .++.++..+++|++|++++|.++..-+   + +|++|++++|.+. .++..+..+++|++|++++|.+. .+ ..+..++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~  115 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-ccccccc
Confidence            455668889999999999999885433   6 9999999999998 45655566678999999999988 44 4578899


Q ss_pred             CCceEecccCccchhhh--HHhhccccCceEecccCccccc
Q 040410          122 SLEVLAINKCNFFNRIL--FLLRNLIQLIILHLSQNSFRGR  160 (171)
Q Consensus       122 ~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~  160 (171)
                      +|+.|++++|.+.. ++  ..+..+++|++|++++|++...
T Consensus       116 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         116 NLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccchhcc-ccccccccCCCccceeecCCCccccC
Confidence            99999999999874 33  4688999999999999998643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=85.32  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccCCcCCCccc------c-cc
Q 040410            5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFS------C-SL   75 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~------~-~L   75 (171)
                      |.+.. ++++.++..++. +|..+.  .+++. ++++|.++ .+|+ .|.++++|++|++++|.+...++      + .+
T Consensus         6 C~C~~-~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           6 CHCSN-RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             EEECS-SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CCCcC-CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccc
Confidence            34433 678888888875 565443  47889 99999997 5655 58899999999999998876544      5 78


Q ss_pred             ceEeccc-ccccccChhhhhcCcCCcEEEccccccc
Q 040410           76 KRLFLVS-CNFWEKVPHSINNFARLQWYDLVFNKFS  110 (171)
Q Consensus        76 ~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~  110 (171)
                      +++.+.. +.+....+..+..+++|+++++.+|.+.
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccchhhhc
Confidence            8888754 5666666777889999999999998876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-11  Score=78.55  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=78.4

Q ss_pred             hcCCCccCCcCCccCCCCCCCcEEEccCCc-CCCccccccceEecccccccccChhhhhcCcCCcEEEcccccccccccc
Q 040410           37 DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA  115 (171)
Q Consensus        37 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  115 (171)
                      +..++.+. ..|..+..+++++.|++.+++ ++                  ...+..|..+++|+.|++++|.+..-.+.
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~------------------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ------------------HLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC------------------EECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             EecCCCCc-cCcccccCccccCeeecCCCcccc------------------ccCchhhccccccCcceeeccccCCcccc
Confidence            55556555 566667777777777776553 43                  33456788899999999999999855567


Q ss_pred             cccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410          116 STKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       116 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      .|..+++|++|++++|.+. .+|.......++++|++++|++.
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            8999999999999999998 45655445557999999999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=7.1e-12  Score=90.90  Aligned_cols=39  Identities=18%  Similarity=0.095  Sum_probs=21.4

Q ss_pred             ccCCCCcEEEeecccccCCC----CCccCCcchhhh-hcCCCcc
Q 040410            5 AKKKQHTYVRLQAKHYTGEL----PFLSGNLRSLKE-DLSKNNS   43 (171)
Q Consensus         5 ~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~-~l~~~~~   43 (171)
                      ...++|+.|++++|.++...    ...+...++|++ ++++|.+
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            34566777777777665431    112233455666 6666643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.12  E-value=5.7e-10  Score=80.15  Aligned_cols=59  Identities=24%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             cCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcc
Q 040410           97 ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD  164 (171)
Q Consensus        97 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~  164 (171)
                      ++|++|++++|.+. .+|..   +++|+.|++++|.++ .+|.   .+++|++|++++|++. .+|..
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCcc
Confidence            34566666666555 44432   345666666666655 3443   2356777777777765 34443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=4.9e-11  Score=86.39  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             cCcCCcEEEccccccccc-----ccccccCCCCCceEecccCccchh----hhHHhhccccCceEecccCccc
Q 040410           95 NFARLQWYDLVFNKFSGE-----LLASTKNLKSLEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        95 ~l~~L~~l~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ..+.++.+++++|.+...     +...+...++|+.|++++|.+...    +...+..+++|++|++++|.+.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            334555555555544321     122334445555555555554322    2233344455555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=1.3e-09  Score=78.29  Aligned_cols=135  Identities=27%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCcccc--ccceEeccccc
Q 040410            8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSC--SLKRLFLVSCN   84 (171)
Q Consensus         8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~L~~L~l~~~~   84 (171)
                      .++++|+|+++.++. +|+.   .++|++ ++++|.++ .+|+.   +.+|+.|++.+|.++....+  .+++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhhhccccccccccccc
Confidence            468999999999986 6643   467889 99999998 78865   46899999999988743333  79999999999


Q ss_pred             ccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410           85 FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus        85 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      +. .+|. ++.+++|++++++++.+. ..+...   ..+..+.+..+....  ...+..++.++.+.+++|...
T Consensus       110 l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~---~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         110 LE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             cc-cccc-hhhhccceeecccccccc-cccccc---ccccchhhccccccc--cccccccccceeccccccccc
Confidence            87 4553 578899999999988776 333332   345555555444331  223455666667776666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.3e-10  Score=84.87  Aligned_cols=153  Identities=16%  Similarity=0.015  Sum_probs=78.0

Q ss_pred             CCCCcEEEeecccccCCC----CCccCCcchhhh-hcCCCccCCc----CCcc-CCCCCCCcEEEccCCcCCCccc----
Q 040410            7 KKQHTYVRLQAKHYTGEL----PFLSGNLRSLKE-DLSKNNSSGE----LPTS-IGNLFPLKELDFLFNKLSSEFS----   72 (171)
Q Consensus         7 l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~-~l~~~~~~~~----~~~~-~~~l~~L~~L~l~~~~~~~~~~----   72 (171)
                      ...++.+++++|.+....    ...+...+.++. ++++|.+...    +... ......|+.+++++|.++....    
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            345555666555543211    111223344555 5555554311    0111 1123456777777776653321    


Q ss_pred             -----c-ccceEeccccccccc----Chhhhh-cCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchhh
Q 040410           73 -----C-SLKRLFLVSCNFWEK----VPHSIN-NFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNRI  137 (171)
Q Consensus        73 -----~-~L~~L~l~~~~~~~~----~~~~~~-~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~  137 (171)
                           . +|++|++++|.+++.    ++..+. ..+.|++|++++|.+++.    +.+.+..+++|++|++++|.++.+.
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence                 3 577777777766532    222232 234577777777776543    3334445567777777777766443


Q ss_pred             hHHhh-----ccccCceEecccCcccc
Q 040410          138 LFLLR-----NLIQLIILHLSQNSFRG  159 (171)
Q Consensus       138 ~~~~~-----~~~~L~~L~l~~n~~~~  159 (171)
                      ...+.     ....|++|++.++.+..
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            32221     12246777777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.6e-09  Score=79.03  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CCcEEEccCCcCCCcc-----c-c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccccccccc-----C
Q 040410           56 PLKELDFLFNKLSSEF-----S-C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTK-----N  119 (171)
Q Consensus        56 ~L~~L~l~~~~~~~~~-----~-~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~-----~  119 (171)
                      +|+.||++++++++..     | + ++++|++.+|+++..    +...+...++|+.|++++|.++......++     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4566666666665421     1 4 566666666665522    233345566677777777666432222222     1


Q ss_pred             CCCCceEecccCccchh----hhHHhhccccCceEecccCccc
Q 040410          120 LKSLEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       120 l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  158 (171)
                      ..+|+.|++++|.++..    ++.++..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23577777777766532    3344555666777777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.7e-08  Score=64.28  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=46.4

Q ss_pred             ccceEeccccccccc--ChhhhhcCcCCcEEEcccccccccccc-cccCCCCCceEecccCccchhh-------hHHhhc
Q 040410           74 SLKRLFLVSCNFWEK--VPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEVLAINKCNFFNRI-------LFLLRN  143 (171)
Q Consensus        74 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~-------~~~~~~  143 (171)
                      .|++|++++|+++..  ++..+..+++|+.|++++|.+. .+++ .......|+.+++++|.+....       ...+..
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            677777777777643  2344566777777777777776 3332 2223345777777777665321       123455


Q ss_pred             cccCceEe
Q 040410          144 LIQLIILH  151 (171)
Q Consensus       144 ~~~L~~L~  151 (171)
                      +++|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            67777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.5e-08  Score=65.48  Aligned_cols=77  Identities=21%  Similarity=0.044  Sum_probs=55.5

Q ss_pred             CCCCCCCcEEEccCCcCCCccc-------c-ccceEecccccccccChhhhhcCcCCcEEEccccccccccc-------c
Q 040410           51 IGNLFPLKELDFLFNKLSSEFS-------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL-------A  115 (171)
Q Consensus        51 ~~~l~~L~~L~l~~~~~~~~~~-------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-------~  115 (171)
                      ...++.|++|++++|+++...+       + +|+.|++++|.+...-+........++.+++.+|++.....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3457889999999998875422       5 88999999999885333344455678999999998875432       2


Q ss_pred             cccCCCCCceEe
Q 040410          116 STKNLKSLEVLA  127 (171)
Q Consensus       116 ~~~~l~~L~~L~  127 (171)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245678898887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.19  E-value=2.6e-06  Score=54.92  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             CCCCcEEEccCC-cCCCccc---------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccccc----
Q 040410           54 LFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELL----  114 (171)
Q Consensus        54 l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~----  114 (171)
                      .++|+.|+++++ .++...-         . .+++|++++|.+...    +...+...+.|++|++++|.+.....    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456777777653 3432211         3 577777777766532    23345556788999999888875433    


Q ss_pred             ccccCCCCCceEecccCccch-------hhhHHhhccccCceEecccCcc
Q 040410          115 ASTKNLKSLEVLAINKCNFFN-------RILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus       115 ~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      +.+...++|++|++++|.+..       .+...+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            345566889999998775431       2445556668888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.73  E-value=3.8e-05  Score=49.08  Aligned_cols=105  Identities=17%  Similarity=0.113  Sum_probs=65.3

Q ss_pred             CCCCCcEEEccC-CcCCCccc---------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc----c
Q 040410           53 NLFPLKELDFLF-NKLSSEFS---------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE----L  113 (171)
Q Consensus        53 ~l~~L~~L~l~~-~~~~~~~~---------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~  113 (171)
                      ..++|++|++++ +.++...-         . .+++|++++|.++..    +...+...++++.+++.+|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345667777765 33432211         3 567777777766533    223445567888888888877643    3


Q ss_pred             cccccCCCCCceEecc--cCccch----hhhHHhhccccCceEecccCcc
Q 040410          114 LASTKNLKSLEVLAIN--KCNFFN----RILFLLRNLIQLIILHLSQNSF  157 (171)
Q Consensus       114 ~~~~~~l~~L~~L~l~--~n~~~~----~~~~~~~~~~~L~~L~l~~n~~  157 (171)
                      .+.+...++|+.+++.  .|.+..    .+...+...++|++|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3555677888876554  555644    3445566778899999887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=2.6e-05  Score=50.04  Aligned_cols=85  Identities=12%  Similarity=0.074  Sum_probs=62.9

Q ss_pred             ccceEecccc-ccccc----ChhhhhcCcCCcEEEccccccccccc----ccccCCCCCceEecccCccchh----hhHH
Q 040410           74 SLKRLFLVSC-NFWEK----VPHSINNFARLQWYDLVFNKFSGELL----ASTKNLKSLEVLAINKCNFFNR----ILFL  140 (171)
Q Consensus        74 ~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~----~~~~  140 (171)
                      ++++|+++++ .++..    +...+...++|+.|++++|.+.....    +.+...++|++|++++|.+...    +..+
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            6899999874 45532    33345667889999999999875433    3445668999999999998764    3344


Q ss_pred             hhccccCceEecccCccc
Q 040410          141 LRNLIQLIILHLSQNSFR  158 (171)
Q Consensus       141 ~~~~~~L~~L~l~~n~~~  158 (171)
                      +...++|++|++++|...
T Consensus        96 L~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTTCCCSEEECCCCSSC
T ss_pred             HHhCCcCCEEECCCCcCC
Confidence            566688999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.54  E-value=0.0018  Score=40.84  Aligned_cols=85  Identities=13%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             ccceEeccc-cccccc----ChhhhhcCcCCcEEEccccccccccc----ccccCCCCCceEecccCccchh----hhHH
Q 040410           74 SLKRLFLVS-CNFWEK----VPHSINNFARLQWYDLVFNKFSGELL----ASTKNLKSLEVLAINKCNFFNR----ILFL  140 (171)
Q Consensus        74 ~L~~L~l~~-~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~----~~~~  140 (171)
                      +|++|++.+ +.++..    +...+...++|++|++++|.+.....    +.+...++++.+++++|.+..+    +..+
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            688999987 456533    33345567899999999998875433    3445668999999999988654    3345


Q ss_pred             hhccccCceEec--ccCccc
Q 040410          141 LRNLIQLIILHL--SQNSFR  158 (171)
Q Consensus       141 ~~~~~~L~~L~l--~~n~~~  158 (171)
                      +...++++.+++  .+|.+.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCccccEEeeccCCCcCc
Confidence            566678887655  455654