Citrus Sinensis ID: 040451

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccHHHHcccccccEEcccccccccccHHHHcccccccEEccccccEEcccccccccccccccccccccEEccccccccccccccEEEcccccccccccHHHHHHccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHccccccccEEEcccEEEEccccccccccccccccccccEEEEcccccccccccccEEEccccEEEEEcccccccccccccccccccEEEccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHcccccccccHcccccccccccccEEcccccccEEEEEEccccccccccHcHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHcHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHcHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccccccccHHHccccccEEEEEccccccccccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEEccccccccccccHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
mksqlqdplgvtsswnnsinlcqwtgvtcghrrqrvtgldlrqqsvggvlspfvgnlsfprsinlpnksfrgeipheVSNLFRlqnltltnnyFSGKILTDlshcsnvmkfeasnnkleaeiPVEIGNLLMLQILNIAENhlkgqlpasignlsaLQEIDVrgnrlggripstISHVRNLISFNVArnqfsgmiplIYNISSLQYIFIHtnrfhgslpldngvnlpnlryfsisgnnltgslQDSLSnatnlqgleingnlfsgkvsinfsrlqnlsrlnlgennlgtgtandLDFITLLTNctklevldlhsnrfggvlpfsLANLSITMTEIangsnqisgtIPDVIANLVNLnalgvesnqlagtIPLAIGELKSLQMLFLNenflrgtipsslgnlTLLTQLILEVNnlqgkippsigncqnlillttrknklsgtvprqLLHIITLPVLldlsdnllnghfpaevgnlknlvsldissnmfsgeipttlggctsleylgmqdnsftrsipstlsslkSITEldlsrnnlsghipqylenlSFLSFLNLSynhfegkvpiec
Flexible Loop (DISEMBL)
mksqlqdplgvtsswnnsINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHfegkvpiec
Low Complexity Region (SEG)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSlgnltlltqlilEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVlldlsdnllnGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYlenlsflsflnlsynhfEGKVPIEC
Disordered region (IsUnstruct)
**********VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT***********SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG******
Disordered Region (DISOPRED)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC
Disordered Region (DISEMBL)
**********VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC
Disordered Region (DISPRO)
*****Q*PLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	566	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.973	0.534	0.453	1e-122
Q9SD62	1025	Putative receptor-like pr	no	no	0.994	0.549	0.465	1e-116
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.992	0.556	0.428	1e-115
Q9FL28	1173	LRR receptor-like serine/	no	no	0.959	0.462	0.357	8e-78
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.915	0.434	0.344	2e-69
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.862	0.389	0.337	9e-69
O49545	1003	Leucine-rich repeat recep	no	no	0.955	0.539	0.329	1e-68
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.955	0.539	0.334	2e-68
C0LGV1	1135	LRR receptor-like serine/	no	no	0.966	0.481	0.328	2e-68
O49318	1124	Probable leucine-rich rep	no	no	0.985	0.496	0.331	1e-67

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/554 (45%), Positives = 363/554 (65%), Gaps = 3/554 (0%)

Query: 11  VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSF 70
           V +SWN+S   C W GVTCG RR+RV  L+L    + GV+SP +GNLSF R +NL + SF
Sbjct: 50  VLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSF 109

Query: 71  RGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLL 130
              IP +V  LFRLQ L ++ N   G+I + LS+CS +   + S+N L   +P E+G+L 
Sbjct: 110 GSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLS 169

Query: 131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQF 190
            L IL++++N+L G  PAS+GNL++LQ++D   N++ G IP  ++ +  ++ F +A N F
Sbjct: 170 KLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSF 229

Query: 191 SG-MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
           SG   P +YNISSL+ + +  N F G+L  D G  LPNLR   +  N  TG++  +L+N 
Sbjct: 230 SGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANI 289

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
           ++L+  +I+ N  SG + ++F +L+NL  L +  N+LG  +++ L+FI  + NCT+LE L
Sbjct: 290 SSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYL 349

Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
           D+  NR GG LP S+ANLS T+T +  G N ISGTIP  I NLV+L  L +E+N L+G +
Sbjct: 350 DVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGEL 409

Query: 370 PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLIL 429
           P++ G+L +LQ++ L  N + G IPS  GN+T L +L L  N+  G+IP S+G C+ L+ 
Sbjct: 410 PVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLD 469

Query: 430 LTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489
           L    N+L+GT+P+++L I +L   +DLS+N L GHFP EVG L+ LV L  S N  SG+
Sbjct: 470 LWMDTNRLNGTIPQEILQIPSL-AYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGK 528

Query: 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 549
           +P  +GGC S+E+L MQ NSF  +IP  +S L S+  +D S NNLSG IP+YL +L  L 
Sbjct: 529 MPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLR 587

Query: 550 FLNLSYNHFEGKVP 563
            LNLS N FEG+VP
Sbjct: 588 NLNLSMNKFEGRVP 601

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 264/567 (46%), Positives = 377/567 (66%), Gaps = 4/567 (0%)

Query: 1   MKSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
            KSQ+ +   V   SWN+S+ LC WTGV CG + +RVTG+DL    + GV+SPFVGNLSF
Sbjct: 47  FKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSF 106

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
            RS+NL +  F G IP EV NLFRLQ L ++NN F G I   LS+CS++   + S+N LE
Sbjct: 107 LRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLE 166

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P+E G+L  L +L++  N+L G+ PAS+GNL++LQ +D   N++ G IP  I+ ++ 
Sbjct: 167 QGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQ 226

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           +I F +A N+F+G+ P  IYN+SSL ++ I  N F G+L  D G  LPNL+   +  N+ 
Sbjct: 227 MIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSF 286

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           TG++ ++LSN ++L+ L+I  N  +GK+ ++F RLQNL  L L  N+LG  ++ DLDF+ 
Sbjct: 287 TGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLG 346

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            LTNC++L+ L++  N+ GG LP  +ANLS  +TE++ G N ISG+IP  I NLV+L  L
Sbjct: 347 ALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +  N L G +P ++GEL  L+ + L  N L G IPSSLGN++ LT L L  N+ +G IP
Sbjct: 407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
            S+G+C  L+ L    NKL+G++P +L+ + +L V+L++S NLL G    ++G LK L++
Sbjct: 467 SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLLA 525

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           LD+S N  SG+IP TL  C SLE+L +Q NSF   IP  +  L  +  LDLS+NNLSG I
Sbjct: 526 LDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTI 584

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P+Y+ N S L  LNLS N+F+G VP E
Sbjct: 585 PEYMANFSKLQNLNLSLNNFDGAVPTE 611

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/567 (42%), Positives = 356/567 (62%), Gaps = 5/567 (0%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
            KSQ+ +D   V SSWN+S  LC W GVTCG + +RVT L+L +  +GGV+SP +GNLSF
Sbjct: 32  FKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSF 91

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
             S++L    F G IP EV  L RL+ L +  NY  G I   L +CS ++     +N+L 
Sbjct: 92  LVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLG 151

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P E+G+L  L  LN+  N+++G+LP S+GNL+ L+++ +  N L G IPS ++ +  
Sbjct: 152 GSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQ 211

Query: 180 LISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           + S  +  N FSG+  P +YN+SSL+ + I  N F G L  D G+ LPNL  F++ GN  
Sbjct: 212 IWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYF 271

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           TGS+  +LSN + L+ L +N N  +G +   F  + NL  L L  N+LG+ ++ DL+F+T
Sbjct: 272 TGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLT 330

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            LTNCT+LE L +  NR GG LP S+ANLS  +  +  G   ISG+IP  I NL+NL  L
Sbjct: 331 SLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            ++ N L+G +P ++G+L +L+ L L  N L G IP+ +GN+T+L  L L  N  +G +P
Sbjct: 391 ILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVP 450

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
            S+GNC +L+ L    NKL+GT+P +++ I  L + LD+S N L G  P ++G L+NL +
Sbjct: 451 TSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQNLGT 509

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           L +  N  SG++P TLG C ++E L ++ N F   IP  L  L  + E+DLS N+LSG I
Sbjct: 510 LSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSI 568

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P+Y  + S L +LNLS+N+ EGKVP++
Sbjct: 569 PEYFASFSKLEYLNLSFNNLEGKVPVK 595

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  291 bits (746), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 291/563 (51%), Gaps = 20/563 (3%)

Query: 7   DPLGVTSSWN--NSINLCQWTGVTC---GHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPR 61
           DPLGV S W    S+  C WTG+TC   GH    V  + L ++ + GVLSP + NL++ +
Sbjct: 44  DPLGVLSDWTIIGSLRHCNWTGITCDSTGH----VVSVSLLEKQLEGVLSPAIANLTYLQ 99

Query: 62  SINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAE 121
            ++L + SF G+IP E+  L  L  L L  NYFSG I + +    N+   +  NN L  +
Sbjct: 100 VLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGD 159

Query: 122 IPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181
           +P EI     L ++    N+L G++P  +G+L  LQ     GN L G IP +I  + NL 
Sbjct: 160 VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLT 219

Query: 182 SFNVARNQFSGMIPLIY-NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
             +++ NQ +G IP  + N+ +LQ + +  N   G +P + G N  +L    +  N LTG
Sbjct: 220 DLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTG 278

Query: 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLL 300
            +   L N   LQ L I  N  +  +  +  RL  L+ L L EN+L    + ++ F+   
Sbjct: 279 KIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFL--- 335

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGV 360
                LEVL LHSN F G  P S+ NL   +T +  G N ISG +P  +  L NL  L  
Sbjct: 336 ---ESLEVLTLHSNNFTGEFPQSITNLR-NLTVLTVGFNNISGELPADLGLLTNLRNLSA 391

Query: 361 ESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
             N L G IP +I     L++L L+ N + G IP   G +  LT + +  N+  G+IP  
Sbjct: 392 HDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDD 450

Query: 421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLD 480
           I NC NL  L+   N L+GT+ + L+  +    +L +S N L G  P E+GNLK+L  L 
Sbjct: 451 IFNCSNLETLSVADNNLTGTL-KPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILY 509

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           + SN F+G IP  +   T L+ L M  N     IP  +  +K ++ LDLS N  SG IP 
Sbjct: 510 LHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

Query: 541 YLENLSFLSFLNLSYNHFEGKVP 563
               L  L++L+L  N F G +P
Sbjct: 570 LFSKLESLTYLSLQGNKFNGSIP 592

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  264 bits (674), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 281/540 (52%), Gaps = 22/540 (4%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
           ++ LD+   S+ G + P +G LS   ++ +   SF G+IP E+ N+  L+N    + +F+
Sbjct: 164 LSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFN 223

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA 155
           G +  ++S   ++ K + S N L+  IP   G L  L ILN+    L G +P  +GN  +
Sbjct: 224 GPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKS 283

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFH 214
           L+ + +  N L G +P  +S +  L++F+  RNQ SG +P  +     L  + +  NRF 
Sbjct: 284 LKSLMLSFNSLSGPLPLELSEIP-LLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFS 342

Query: 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ 274
           G +P +   + P L++ S++ N L+GS+   L  + +L+ ++++GNL SG +   F    
Sbjct: 343 GEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCS 401

Query: 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334
           +L  L L  N +      DL  + L+        LDL SN F G +P SL   S  + E 
Sbjct: 402 SLGELLLTNNQINGSIPEDLWKLPLMA-------LDLDSNNFTGEIPKSLWK-STNLMEF 453

Query: 335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP 394
               N++ G +P  I N  +L  L +  NQL G IP  IG+L SL +L LN N  +G IP
Sbjct: 454 TASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIP 513

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQ---LLHIITL 451
             LG+ T LT L L  NNLQG+IP  I     L  L    N LSG++P +     H I +
Sbjct: 514 VELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573

Query: 452 PVL--------LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
           P L         DLS N L+G  P E+G    LV + +S+N  SGEIP +L   T+L  L
Sbjct: 574 PDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTIL 633

Query: 504 GMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
            +  N+ T SIP  + +   +  L+L+ N L+GHIP+    L  L  LNL+ N  +G VP
Sbjct: 634 DLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  261 bits (668), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 272/524 (51%), Gaps = 36/524 (6%)

Query: 41  LRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILT 100
           L +  + G +   + N    + ++L N +  G+IP  +  L  L NL L NN   G + +
Sbjct: 344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query: 101 DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160
            +S+ +N+ +F   +N LE ++P EIG L  L+I+ + EN   G++P  IGN + LQEID
Sbjct: 404 SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEID 463

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPL 219
             GNRL G IPS+I  +++L   ++  N+  G IP  + N   +  I +  N+  GS+P 
Sbjct: 464 WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRL 279
             G  L  L  F I  N+L G+L DSL N  NL  +  + N F+G +S            
Sbjct: 524 SFGF-LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPL---------- 572

Query: 280 NLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339
                    G+++ L F             D+  N F G +P  L   S  +  +  G N
Sbjct: 573 --------CGSSSYLSF-------------DVTENGFEGDIPLELGK-STNLDRLRLGKN 610

Query: 340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN 399
           Q +G IP     +  L+ L +  N L+G IP+ +G  K L  + LN N+L G IP+ LG 
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD 459
           L LL +L L  N   G +P  I +  N++ L    N L+G++P+++ ++  L  L +L +
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL-NLEE 729

Query: 460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTRSIPSTL 518
           N L+G  P+ +G L  L  L +S N  +GEIP  +G    L+  L +  N+FT  IPST+
Sbjct: 730 NQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query: 519 SSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 562
           S+L  +  LDLS N L G +P  + ++  L +LNLSYN+ EGK+
Sbjct: 790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 299/555 (53%), Gaps = 14/555 (2%)

Query: 13  SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRG 72
           SSW  S + C W GVTC   R+ VT LDL   ++ G LSP V +L   ++++L      G
Sbjct: 48  SSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISG 107

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSH-CSNVMKFEASNNKLEAEIPVEIGNLLM 131
            IP E+S+L  L++L L+NN F+G    ++S    N+   +  NN L  ++PV + NL  
Sbjct: 108 PIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQ 167

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR-NQF 190
           L+ L++  N+  G++P S G+   ++ + V GN L G+IP  I ++  L    +   N F
Sbjct: 168 LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 191 S-GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
             G+ P I N+S L           G +P + G  L  L    +  N  +G L   L   
Sbjct: 228 EDGLPPEIGNLSELVRFDGANCGLTGEIPPEIG-KLQKLDTLFLQVNVFSGPLTWELGTL 286

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
           ++L+ ++++ N+F+G++  +F+ L+NL+ LNL  N L        +    + +  +LEVL
Sbjct: 287 SSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHG------EIPEFIGDLPELEVL 340

Query: 310 DLHSNRFGGVLPFSLA-NLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
            L  N F G +P  L  N  + + +++  SN+++GT+P  + +   L  L    N L G+
Sbjct: 341 QLWENNFTGSIPQKLGENGKLNLVDLS--SNKLTGTLPPNMCSGNKLETLITLGNFLFGS 398

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
           IP ++G+ +SL  + + ENFL G+IP  L  L  LTQ+ L+ N L G++P + G   NL 
Sbjct: 399 IPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLG 458

Query: 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG 488
            ++   N+LSG +P  + +   +  LL L  N   G  P+EVG L+ L  +D S N+FSG
Sbjct: 459 QISLSNNQLSGPLPPAIGNFTGVQKLL-LDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSG 517

Query: 489 EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
            I   +  C  L ++ +  N  +  IP+ ++++K +  L+LSRN+L G IP  + ++  L
Sbjct: 518 RIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSL 577

Query: 549 SFLNLSYNHFEGKVP 563
           + L+ SYN+  G VP
Sbjct: 578 TSLDFSYNNLSGLVP 592

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 303/556 (54%), Gaps = 15/556 (2%)

Query: 13  SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRG 72
           +SWN S   C WTGVTC    + VT LDL   ++ G LS  V +L   ++++L      G
Sbjct: 48  TSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISG 107

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSH-CSNVMKFEASNNKLEAEIPVEIGNLLM 131
            IP ++SNL+ L++L L+NN F+G    +LS    N+   +  NN L  ++PV + NL  
Sbjct: 108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQ 167

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR-NQF 190
           L+ L++  N+  G++PA+ G    L+ + V GN L G+IP  I ++  L    +   N F
Sbjct: 168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 191 S-GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
             G+ P I N+S L           G +P + G  L  L    +  N  TG++   L   
Sbjct: 228 ENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGLI 286

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
           ++L+ ++++ N+F+G++  +FS+L+NL+ LNL  N L        +FI  +    +LEVL
Sbjct: 287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIP---EFIGEMP---ELEVL 340

Query: 310 DLHSNRFGGVLPFSLA-NLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
            L  N F G +P  L  N  + + +++  SN+++GT+P  + +   L  L    N L G+
Sbjct: 341 QLWENNFTGSIPQKLGENGRLVILDLS--SNKLTGTLPPNMCSGNRLMTLITLGNFLFGS 398

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ-NL 427
           IP ++G+ +SL  + + ENFL G+IP  L  L  L+Q+ L+ N L G++P S G    +L
Sbjct: 399 IPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDL 458

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
             ++   N+LSG++P  + ++  +  LL L  N  +G  P E+G L+ L  LD S N+FS
Sbjct: 459 GQISLSNNQLSGSLPAAIGNLSGVQKLL-LDGNKFSGSIPPEIGRLQQLSKLDFSHNLFS 517

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
           G I   +  C  L ++ +  N  +  IP+ L+ +K +  L+LSRN+L G IP  + ++  
Sbjct: 518 GRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQS 577

Query: 548 LSFLNLSYNHFEGKVP 563
           L+ ++ SYN+  G VP
Sbjct: 578 LTSVDFSYNNLSGLVP 593

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 298/585 (50%), Gaps = 38/585 (6%)

Query: 8   PLGVTSSWNNS-INLCQWTGVTCGHRRQRVT-------------------------GLDL 41
           P  V S WN S  + CQW  +TC     ++                           L +
Sbjct: 54  PPSVFSGWNPSDSDPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVI 113

Query: 42  RQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTD 101
              ++ G +S  +G+ S    I+L + S  GEIP  +  L  LQ L L +N  +GKI  +
Sbjct: 114 SNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPE 173

Query: 102 LSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN-HLKGQLPASIGNLSALQEID 160
           L  C ++   E  +N L   +P+E+G +  L+ +    N  L G++P  IGN   L+ + 
Sbjct: 174 LGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLG 233

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPL 219
           +   ++ G +P ++  +  L S +V     SG IP  + N S L  +F++ N   G+LP 
Sbjct: 234 LAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPK 293

Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRL 279
           + G  L NL    +  NNL G + + +    +L  ++++ N FSG +  +F  L NL  L
Sbjct: 294 ELG-KLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQEL 352

Query: 280 NLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339
            L  NN+ TG+       ++L+NCTKL    + +N+  G++P  +  L   +       N
Sbjct: 353 MLSSNNI-TGS-----IPSILSNCTKLVQFQIDANQISGLIPPEIGLLK-ELNIFLGWQN 405

Query: 340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN 399
           ++ G IPD +A   NL AL +  N L G++P  + +L++L  L L  N + G IP  +GN
Sbjct: 406 KLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGN 465

Query: 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD 459
            T L +L L  N + G+IP  IG  QNL  L   +N LSG VP ++ +   L  +L+LS+
Sbjct: 466 CTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQ-MLNLSN 524

Query: 460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
           N L G+ P  + +L  L  LD+SSN  +G+IP +LG   SL  L +  NSF   IPS+L 
Sbjct: 525 NTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLG 584

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSF-LNLSYNHFEGKVP 563
              ++  LDLS NN+SG IP+ L ++  L   LNLS+N  +G +P
Sbjct: 585 HCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIP 629

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  258 bits (658), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 291/613 (47%), Gaps = 55/613 (8%)

Query: 5   LQDPLGVTSSWNN-SINLCQWTGVTCGHRRQR-------VTGLDLRQQSVGGVLSPFVGN 56
            QD L    +WN      C W GV C  +          VT LDL   ++ G++SP +G 
Sbjct: 48  FQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGG 107

Query: 57  LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN 116
           L     +NL   +  G+IP E+ N  +L+ + L NN F G I  +++  S +  F   NN
Sbjct: 108 LVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNN 167

Query: 117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH 176
           KL   +P EIG+L  L+ L    N+L G LP S+GNL+ L       N   G IP+ I  
Sbjct: 168 KLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGK 227

Query: 177 VRNLISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
             NL    +A+N  SG +P  I  +  LQ + +  N+F G +P D G NL +L   ++ G
Sbjct: 228 CLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG-NLTSLETLALYG 286

Query: 236 NNLTGSLQDSLSNATNLQGL-----EING-------------------NLFSGKVSINFS 271
           N+L G +   + N  +L+ L     ++NG                   NL SG++ +  S
Sbjct: 287 NSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELS 346

Query: 272 RLQNLSRLNLGENNLGTGTANDLDFITLLT------------------NCTKLEVLDLHS 313
           ++  L  L L +N L     N+L  +  L                   N T +  L L  
Sbjct: 347 KISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFH 406

Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
           N   GV+P  L  L   +  +    NQ+SG IP  I    NL  L + SN++ G IP  +
Sbjct: 407 NSLSGVIPQGLG-LYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGV 465

Query: 374 GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR 433
              KSL  L +  N L G  P+ L  L  L+ + L+ N   G +PP IG CQ L  L   
Sbjct: 466 LRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLA 525

Query: 434 KNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT 493
            N+ S  +P ++  +  L V  ++S N L G  P+E+ N K L  LD+S N F G +P  
Sbjct: 526 ANQFSSNLPNEISKLSNL-VTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPE 584

Query: 494 LGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF-LN 552
           LG    LE L + +N F+ +IP T+ +L  +TEL +  N  SG IP  L  LS L   +N
Sbjct: 585 LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMN 644

Query: 553 LSYNHFEGKVPIE 565
           LSYN F G++P E
Sbjct: 645 LSYNDFSGEIPPE 657

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
224116466	1008	predicted protein [Populus trichocarpa]	0.994	0.558	0.475	1e-134
255577438	1028	receptor-kinase, putative [Ricinus commu	0.987	0.543	0.458	1e-134
224115346	1017	predicted protein [Populus trichocarpa]	0.989	0.550	0.489	1e-133
224097752	1025	predicted protein [Populus trichocarpa]	0.996	0.550	0.458	1e-130
224135241	985	predicted protein [Populus trichocarpa]	0.973	0.559	0.460	1e-129
224127492	1022	predicted protein [Populus trichocarpa]	0.996	0.551	0.470	1e-129
449441592	1023	PREDICTED: probable LRR receptor-like se	0.994	0.550	0.465	1e-128
255581223	1015	receptor-kinase, putative [Ricinus commu	0.985	0.549	0.479	1e-128
359482058	1040	PREDICTED: probable LRR receptor-like se	0.996	0.542	0.469	1e-128
449499190	1023	PREDICTED: LOW QUALITY PROTEIN: probable	0.994	0.550	0.463	1e-127

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/566 (47%), Positives = 373/566 (65%), Gaps = 3/566 (0%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFP 60
            K+Q+ DP    SSWN S++ CQW+GV CG + QRV  LDL    + G LSP +GNLSF 
Sbjct: 36  FKAQISDPTTKLSSWNESLHFCQWSGVKCGRQHQRVIELDLHSSQLVGSLSPSIGNLSFL 95

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
           R ++L N SF   IP E+  L RLQ L L NN FSG+I +++SHCSN++K     N L  
Sbjct: 96  RLLSLENNSFTNAIPQEIGRLVRLQTLILGNNSFSGEIPSNISHCSNLLKLNLEGNNLTG 155

Query: 121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
            +P  +G+L  LQ+ +  +N+L G++P S  NLS++ EID   N + G IPS+I  ++ L
Sbjct: 156 NLPAGLGSLSKLQVFSFRKNNLDGKIPLSFENLSSIIEIDGTLNNIQGGIPSSIGKLKTL 215

Query: 181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
             F++  N  SG IP  +YNISSL +  +  N+FHG+LP + G+ LPNL+Y  I  N L+
Sbjct: 216 NFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQFHGTLPPNIGLTLPNLQYLGIHDNRLS 275

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
           G L  +L NAT    + ++ N F+GKV    + + NL  L++ EN LG G  +DL F+  
Sbjct: 276 GQLPATLINATKFTEIYLSYNKFTGKVP-TLAIMPNLRILSMEENGLGKGEDDDLSFLYT 334

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           L+N +KLE L + +N FGGVLP  ++N S  + ++A GSNQI GTIPD I NLV+L+ LG
Sbjct: 335 LSNSSKLEDLYIDNNNFGGVLPDIISNFSTKLKQMAFGSNQIRGTIPDGIGNLVSLDTLG 394

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           +E+N L G+IP +IG+L++L   FLNEN L G+IPSSLGN+T L Q+  + NNLQG IPP
Sbjct: 395 LEANHLTGSIPSSIGKLQNLADFFLNENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPP 454

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
           S+GNCQNL++L   +N LSG +P+++L I +L + L LS+N L G  P EVG L  L  +
Sbjct: 455 SLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLTGSLPFEVGKLVTLGYM 514

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
           DIS N  SGEIP +LG C SLE+L +  N     I  +L SL+++ +L+LS NNLSG IP
Sbjct: 515 DISKNRLSGEIPASLGSCESLEHLYLDGNFLQGPISESLRSLRALQDLNLSHNNLSGQIP 574

Query: 540 QYLENLSFLSFLNLSYNHFEGKVPIE 565
           ++L +L   S L+LS+N  EG+VP+ 
Sbjct: 575 KFLGDLKLQS-LDLSFNDLEGEVPMH 599

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/561 (45%), Positives = 367/561 (65%), Gaps = 2/561 (0%)

Query: 6   QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINL 65
            DPL + SSWN S++ C+W+G+TCG R QRV  +DL    + G L+ F+GNLSF R +NL
Sbjct: 48  DDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNL 107

Query: 66  PNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVE 125
            N S    IP E+  LFRL+ L L  N FSG+I  ++S+CSN++      N L  ++P E
Sbjct: 108 QNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAE 167

Query: 126 IGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
           + +L  LQ+     N+L G++  S  NLS+L+ I    N   G IP++I  +++L +F++
Sbjct: 168 LKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSL 227

Query: 186 ARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244
             + FSG+IP  I+N+SSL  + +  N+ HG+LP D G +LP L    +  N  +GS+  
Sbjct: 228 GGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPP 287

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
           ++SNA+NL  L+++ N F+GKV  + +RL NLS + + +NNLG G  +DL F+  L N T
Sbjct: 288 TISNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNT 346

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
            LE+L +  N  GGVLP  L+N S  +  +A G N+I G IP  I NL+ L ALG E N+
Sbjct: 347 NLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNE 406

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424
           L G+IP ++G+LK+L  L+LN+N + G+IPSSLGN+T L+ + L+VNNL+G IP S+GNC
Sbjct: 407 LTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNC 466

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
           Q ++L+   +N LSGT+P++L+ I +L + LDLS+N   G  P EVG L NL  LD+S N
Sbjct: 467 QQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKN 526

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
             SGEIP +LG CT LE L +Q N+F  +IP +LSSL+ I +L+LS NNL+G IP +   
Sbjct: 527 KLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAE 586

Query: 545 LSFLSFLNLSYNHFEGKVPIE 565
              L  L+LSYN FEG+VP E
Sbjct: 587 FKSLEKLDLSYNDFEGEVPAE 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/562 (48%), Positives = 370/562 (65%), Gaps = 2/562 (0%)

Query: 5   LQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSIN 64
           + DP  +  SWN+S++ CQW GV CG R +RVT L L    + G +SP +GNLSF   ++
Sbjct: 51  IHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISPALGNLSFLWGLD 110

Query: 65  LPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPV 124
           L N + +G+IP  +  LFRLQ L L NN F G+I  +LSHCS +     ++N L  +IP 
Sbjct: 111 LSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLGLASNNLVGKIPA 170

Query: 125 EIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
           E+ +L  L+ L I +N+L G +P  IGNL++L  I    N   GRIP T+  ++NL S  
Sbjct: 171 ELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLG 230

Query: 185 VARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ 243
           +  N  SG IPL IYN+S+L  + +  N+  G LP D GV+LPNL+Y  I  N  +GS+ 
Sbjct: 231 LGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIP 290

Query: 244 DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
            S+SN++NLQ LE   N FSGK+S+NF  L++L+ ++L  N +G+G   +L F+  L NC
Sbjct: 291 LSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINC 350

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
           T L  +D+  N F G+LP SL NLS  +T +  G NQ+ G I   I NL+NLN LG+E N
Sbjct: 351 TSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFN 410

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN 423
           QL+G IPL IG+L+ LQ   L+ N L G IPSS+GNLTLL +  L+ N LQG IP SIGN
Sbjct: 411 QLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGN 470

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483
           CQ L+LL   +N LSG  P++L  I +L V LDLS N  NG  P+E+G+LK+L  L++S 
Sbjct: 471 CQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSY 530

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N FSGEIP+TL  CTSLEYL MQ N F  SIPS+ S+L+ I +LDLS NNLSG IP++L+
Sbjct: 531 NEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQIPKFLD 590

Query: 544 NLSFLSFLNLSYNHFEGKVPIE 565
             + L+ LNLS+N FEG+VP +
Sbjct: 591 TFALLT-LNLSFNDFEGEVPTK 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/567 (45%), Positives = 370/567 (65%), Gaps = 3/567 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
           +KSQ+  DP G+ SSWN S++ C W+GV CG R +RV  +DL    + G LSP +GNLSF
Sbjct: 42  LKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLSF 101

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
            R + L N  F   IP E+ +LFRL+ L+L NN F GKI  ++SHCSN++    S N L 
Sbjct: 102 LRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLT 161

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
            ++P+E+G+L  LQ+     N+L G +P+S GNLSA+ +I   GN L G IP++I  +++
Sbjct: 162 GKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQIFGAGNYLQGGIPNSIGQLKS 221

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L SF+  RN  +GMIP  IYN+SSL    +  N+ HG+LP D G+ LPNL    +S N  
Sbjct: 222 LKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRF 281

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           +GS+  + SNA+ +  +E++ N  +G+V  + S L  L  L +  N LG G  +DL F+ 
Sbjct: 282 SGSIPPTFSNASTIAVIELSNNNLTGRVP-DLSSLSKLRWLIVDVNYLGNGNDDDLSFLP 340

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            L N T LE L ++ N FGG+LP  ++N S  +  +  G NQI G+IP  I NL+ L+ L
Sbjct: 341 PLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGIGNLIGLDTL 400

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G+E NQL G IP +IG+L++L +L L  N + G IPSS+GN+T L ++ L  NNLQG+IP
Sbjct: 401 GLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLSANNLQGRIP 460

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
            S+GNCQNL++L   +N LSG++P++++ I +   +L LS+N L G  P EVG L NL  
Sbjct: 461 SSLGNCQNLLILHLDQNNLSGSIPKEVISIPSSSRILVLSENQLTGSLPLEVGKLANLGY 520

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
            ++S N  SGEIP TLG C SLE+L M+ N F   IP +LSSL+++  L+LS NNLSG I
Sbjct: 521 FNLSHNRLSGEIPRTLGSCVSLEFLYMEGNLFQGPIPESLSSLRALQILNLSHNNLSGEI 580

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P++L  L  L+ L+LS+N+ EG+VP++
Sbjct: 581 PKFLAELKLLTSLDLSFNNLEGEVPVQ 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135241|ref|XP_002327600.1| predicted protein [Populus trichocarpa] gi|222836154|gb|EEE74575.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/565 (46%), Positives = 363/565 (64%), Gaps = 14/565 (2%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFP 60
            K+Q+ DP    SSWN S+  CQW+GVTCG R QRV  LDL    + G LSP +GNLSF 
Sbjct: 14  FKAQISDPPEKLSSWNESLPFCQWSGVTCGRRHQRVIELDLHSSQLVGSLSPHIGNLSFL 73

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
           R + L N SF   IP E+  L RLQ L L NN F+G+I  ++SHCSN++      N L  
Sbjct: 74  RLLRLENNSFTNTIPQEIDRLVRLQTLILGNNSFTGEIPANISHCSNLLSLNLEGNNLTG 133

Query: 121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
            +P  +G+L  LQ+ +  +N+L G++P S  NLS++ EID   N L G IPS+I  ++ L
Sbjct: 134 NLPAGLGSLSKLQVFSFRKNNLGGKIPPSFENLSSIIEIDGTLNNLQGGIPSSIGKLKTL 193

Query: 181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
             F++  N  SG IPL +YNISSL ++ +  N+FHG+LP + G+ LPNL+Y  I  N L+
Sbjct: 194 SFFSLGSNNLSGTIPLSLYNISSLLHLSLAHNQFHGTLPPNMGLTLPNLQYLGIHDNRLS 253

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
           G +  +L NAT   G+ ++ N F+GKV    + + NL  L++    LG G  +DL F+  
Sbjct: 254 GLIPATLINATKFTGIYLSYNEFTGKVP-TLASMPNLRVLSMQAIGLGNGEDDDLSFLYT 312

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           L+N +KLE L ++ N FGGVLP  ++N S  + ++  GSNQI G+IPD I NLV+L+ LG
Sbjct: 313 LSNSSKLEALAINENNFGGVLPDIISNFSTKLKQMTFGSNQIRGSIPDGIGNLVSLDTLG 372

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           +E+N L G+IP +IG+L++L   FLNEN L G IPSSLGN+T L Q+  + NNLQG IPP
Sbjct: 373 LEANHLTGSIPSSIGKLQNLADFFLNENKLSGRIPSSLGNITSLMQINFDQNNLQGSIPP 432

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
           S+GNCQNL++L   +N LSG +P+++L I +L + L LS+N L             L  +
Sbjct: 433 SLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQL------------TLGYM 480

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
           DIS N  SGEIP +LG C SLE+L +  N F   I  +L SL+++ +L+LS NNL+G IP
Sbjct: 481 DISKNRLSGEIPASLGSCESLEHLSLDGNFFQGPISESLRSLRALQDLNLSHNNLTGQIP 540

Query: 540 QYLENLSFLSFLNLSYNHFEGKVPI 564
           ++L +   L  L+LS+N  EG+VP+
Sbjct: 541 KFLGDFKLLQSLDLSFNDLEGEVPM 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/568 (47%), Positives = 359/568 (63%), Gaps = 4/568 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
            K+Q+  DPLG  SSWN S   CQW+GVTCG R QRV  LDL    + G LSP +GNLSF
Sbjct: 42  FKAQITGDPLGKLSSWNESSQFCQWSGVTCGRRHQRVVELDLHSYQLVGSLSPHIGNLSF 101

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
            R +NL N S    IP E+  LFRL+ L L NN F G I  ++S C+N+   + S   L 
Sbjct: 102 LRILNLANNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPANISRCANLRILDFSRGNLT 161

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
            ++P E+G L  LQ+L I  N+  G++P S GNLSA+  I    N L G IP+    ++ 
Sbjct: 162 GKLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINAIYGSINNLEGSIPNVFGQLKR 221

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L   ++  N  SGMIP  I+N+SSL  +    N+ +GSLP   G+ LPNL+ F+I  N  
Sbjct: 222 LKILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTNQF 281

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
            G +  + SNA+NL   +I  N F+GKV    S   +L  L +G+NNLG G  NDL+F+ 
Sbjct: 282 GGLIPATFSNASNLLSFQIGSNNFNGKVP-PLSSSHDLQVLGVGDNNLGKGENNDLNFVY 340

Query: 299 -LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNA 357
            L  N T LE LD   N FGGVLP  ++N S  + ++    NQI G+IP  I NL+NL A
Sbjct: 341 PLANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLEA 400

Query: 358 LGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417
           LG+E+NQL G IP ++G+L+ L  LFLN N + G IPSS+GN+T L ++ + +NNL+G I
Sbjct: 401 LGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSI 460

Query: 418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLV 477
           PPS+GN Q L+ L   +N LSG +P++L+ I +L + L LS+N L G  P E+  L NL 
Sbjct: 461 PPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLG 520

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGH 537
            LD+S N FSGEIP +LG C SLE L +++N     IP TLSSL++I EL+LS NNL+G 
Sbjct: 521 YLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTGQ 580

Query: 538 IPQYLENLSFLSFLNLSYNHFEGKVPIE 565
           IP++LE+   L  LNLS+N FEG+VP++
Sbjct: 581 IPEFLEDFKLLESLNLSFNDFEGEVPVQ 608

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/567 (46%), Positives = 353/567 (62%), Gaps = 4/567 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
            KS++  DPLG+  SWN S++ C W GV C  +R RVT L+L      G LSP +GNLSF
Sbjct: 47  FKSEITVDPLGLFISWNESVHFCNWAGVICNPQR-RVTELNLPSYQFNGKLSPSIGNLSF 105

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
             ++NLPN SF GEIP E+ +L RLQ L   NNYF G+I   +S+CS +      NN L 
Sbjct: 106 LTTLNLPNNSFGGEIPQEIGSLSRLQELDFRNNYFVGEIPITISNCSQLQYIGLLNNNLT 165

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P+E+G L  L++   + N L G++P + GNLS+L+      N   G IPS+   +RN
Sbjct: 166 GVLPMELGLLTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFGQLRN 225

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L +  +  N+ SG IP  IYNISS++   +  N+  G LP + G   PNL+   I  N  
Sbjct: 226 LTALVIGANKLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQF 285

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           +G +  +LSNA+ L+   I+ N+FSGKV  + +  ++L    +  NNLG G  +DL+F+ 
Sbjct: 286 SGPIPFTLSNASKLEEFVISNNMFSGKVP-SLASTRHLEVFGIDRNNLGYGNVDDLNFLF 344

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            L NCT L  + +  N FGG LP  ++N S  +  I  G NQI GTIP  I NL  L AL
Sbjct: 345 PLVNCTNLSSVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEAL 404

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G+E+NQL G+IP + G+L  L  LFLN N L GTIP SLGNL+ L +  L +NNL G IP
Sbjct: 405 GLETNQLTGSIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIP 464

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
           PS+G  Q+L++L   +N+LSG +P++LL I +L + LDLS+N L G  P EVG L NL  
Sbjct: 465 PSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGY 524

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           L IS NM +G IP+TL  CTSLE L +  N     IP +LSSL+ I ELDLSRNNLSG I
Sbjct: 525 LHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGKI 584

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P YL+    LS+LNLS+N+ EG+VP +
Sbjct: 585 PTYLQEFEVLSYLNLSFNNLEGEVPTQ 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/561 (47%), Positives = 360/561 (64%), Gaps = 3/561 (0%)

Query: 6   QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINL 65
            DPLG    WN+S + CQW GVTC  R QRV  L+LR   + G +SP +GNLSF R + L
Sbjct: 47  DDPLGFMPLWNDSTHFCQWYGVTCSRRHQRVAILNLRSLQLAGSISPHIGNLSFLRDLYL 106

Query: 66  PNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVE 125
            N SF   IP EV  L RLQ L L+NN  +G I +++S CS + +   + N+LE EIP E
Sbjct: 107 QNNSFSHGIPPEVGRLRRLQRLRLSNNSLTGNIPSNISACSKLSEIYFAYNQLEGEIPEE 166

Query: 126 IGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
           +  L  LQ+++I +N+  G +P SIGNLS+LQ +    N L G IP  I  + NLI  ++
Sbjct: 167 LSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAPENYLSGNIPDAIGQLNNLIFISL 226

Query: 186 ARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244
           + N  SG IP  IYN+SS+  + I  N+  G LP + G+ LPNL+ F+I+ N+  GS+  
Sbjct: 227 SVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNLGITLPNLQVFAIARNDFIGSIPS 286

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
           S SNA+NL  L ++ N  +G+V  +  +L NL  L LG N LG   ANDLDF++ L NCT
Sbjct: 287 SFSNASNLVWLIMSENKLTGRVP-SLEQLHNLQILGLGYNYLGL-EANDLDFVSSLVNCT 344

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
            L  L++H+N+F GVLP S++N S T +++    N I+G IP  I+NLVNL  L + +NQ
Sbjct: 345 NLWRLEIHNNKFHGVLPESISNFSTTFSQLVIAENNIAGRIPSSISNLVNLERLEMANNQ 404

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424
           L+G IP   G L  L++L L  N L GTIPSSLGNLT+L  L    NNLQG+IP S+  C
Sbjct: 405 LSGNIPSNFGNLNMLKVLHLFGNKLSGTIPSSLGNLTMLLTLSFYDNNLQGRIPSSLAEC 464

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
           +NL++L   KN LSG++P Q+  + +L + LDLS N   G  P EVGNLK+L  L IS N
Sbjct: 465 ENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPMEVGNLKDLEQLGISDN 524

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
           M SG IP +LG C  LE L +Q N F   +PS+LSSL+ +  LD S NNLSG IP++L++
Sbjct: 525 MLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDFSSNNLSGEIPEFLQS 584

Query: 545 LSFLSFLNLSYNHFEGKVPIE 565
              L  LNLSYN+FEG+VP+E
Sbjct: 585 FDLLESLNLSYNNFEGRVPVE 605

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 266/567 (46%), Positives = 369/567 (65%), Gaps = 3/567 (0%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
           +K+Q+ QDPLG+T+SWN+S++ C WTGVTCGHR QRV  L+L    + G LSP +GNL+F
Sbjct: 47  IKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHLVGSLSPSIGNLTF 106

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
              +NL   +F G+IP E+  L RL+ L LTNN FSG+I  +LS CSN++ F    N L 
Sbjct: 107 LTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLI 166

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             IP  +G+   +  + +  N+L G +P S+GNL++++ +    N L G IP  +  ++ 
Sbjct: 167 GRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGSIPQALGQLQT 226

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L    +  N FSG+IP  +YN+SSL+   +  N+ +GSLP D    LPNL+  +I  N+ 
Sbjct: 227 LEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNLQVLNIGNNDF 286

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           TGSL  SLSNA+NL   +I  + F+GKVSI+F  + NL  L L  N LG G A+DL F+ 
Sbjct: 287 TGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGKGEADDLSFLN 346

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            L  C  L+VLDL  ++FGGVLP S+ANLS  + ++   +NQ+SGTIP  I NLVNL  L
Sbjct: 347 SLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPGIGNLVNLTDL 406

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            + +N   G+IP+ IG L+ L  + L+ N L G IPSSLGN+T L  L L+ N+L GKIP
Sbjct: 407 ILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRLYSLHLQNNHLSGKIP 466

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
            S GN   L  L    N L+GT+P +++ +++L + L+L+ N L G  P+EV  LKNL  
Sbjct: 467 SSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLARNQLTGLLPSEVRKLKNLGH 526

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           LD+S N  SGEIP  LG C +LE+L M+ N F  SIP +  SL+ + +LDLSRNNLSG I
Sbjct: 527 LDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSFISLRGLLDLDLSRNNLSGQI 586

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P++L+ LS LS LNLS+N+FEG++P +
Sbjct: 587 PEFLQQLS-LSNLNLSFNNFEGQLPTK 612

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/567 (46%), Positives = 352/567 (62%), Gaps = 4/567 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
            KS++  DPLG+  SWN S++ C W GV C  +R RVT L+L      G LSP +GNLSF
Sbjct: 47  FKSEITVDPLGLFISWNESVHFCNWAGVICNPQR-RVTELNLPSYQFNGKLSPSIGNLSF 105

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
             ++NLPN SF GEIP E+ +L RLQ L   NNYF G+I   +S+CS +       N L 
Sbjct: 106 LTTLNLPNNSFGGEIPQEIGSLSRLQELDFRNNYFVGEIPITISNCSQLQYIGLLKNNLT 165

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P+E+G L  L++   + N L G++P + GNLS+L+      N   G IPS+   +RN
Sbjct: 166 GVLPMELGLLTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFGQLRN 225

Query: 180 LISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L +  +  N+ SG IP  IYNISS++   +  N+  G LP + G   PNL+   I  N  
Sbjct: 226 LTALVIGANKLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQF 285

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           +G +  +LSNA+ L+   I+ N+FSGKV  + +  ++L    +  NNLG G  +DL+F+ 
Sbjct: 286 SGPIPFTLSNASKLEEFVISNNMFSGKVP-SLASTRHLEVFGIDRNNLGYGNVDDLNFLF 344

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            L NCT L  + +  N FGG LP  ++N S  +  I  G NQI GTIP  I NL  L AL
Sbjct: 345 PLVNCTNLSSVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEAL 404

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G+E+NQL G+IP + G+L  L  LFLN N L GTIP SLGNL+ L +  L +NNL G IP
Sbjct: 405 GLETNQLTGSIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIP 464

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
           PS+G  Q+L++L   +N+LSG +P++LL I +L + LDLS+N L G  P EVG L NL  
Sbjct: 465 PSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGY 524

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           L IS NM +G IP+TL  CTSLE L +  N     IP +LSSL+ I ELDLSRNNLSG I
Sbjct: 525 LHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGKI 584

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P YL+    LS+LNLS+N+ EG+VP +
Sbjct: 585 PTYLQEFEVLSYLNLSFNNLEGEVPTQ 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.992	0.548	0.429	2.1e-116
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.989	0.543	0.414	7.3e-114
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.989	0.553	0.384	3.1e-106
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.991	0.555	0.397	4e-106
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.994	0.557	0.384	1.8e-101
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.973	0.537	0.393	5.9e-101
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.885	0.616	0.354	7.9e-78
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.964	0.465	0.332	4.2e-74
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.913	0.515	0.321	4.4e-66
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.924	0.418	0.313	4.9e-66

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 243/566 (42%), Positives = 349/566 (61%)

Query:     2 KSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFP 60
             KSQ+ +   V   SWN+S+ LC WTGV CG + +RVTG+DL    + GV+SPFVGNLSF 
Sbjct:    48 KSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFL 107

Query:    61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
             RS+NL +  F G IP EV NLFRLQ L ++NN F G I   LS+CS++   + S+N LE 
Sbjct:   108 RSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQ 167

Query:   121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P+E G+L  L +L++  N+L G+ PAS+GNL++LQ +D   N++ G IP  I+ ++ +
Sbjct:   168 GVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQM 227

Query:   181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
             I F +A N+F+G+ P  IYN+SSL ++ I  N F G+L  D G  LPNL+   +  N+ T
Sbjct:   228 IFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFT 287

Query:   240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
             G++ ++LSN ++L+ L+I  N  +GK+ ++F RLQNL  L L  N+LG  ++ DLDF+  
Sbjct:   288 GTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGA 347

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
             LTNC++L+ L++  N+ GG LP  +ANLS  +TE++ G N ISG+IP  I NLV+L  L 
Sbjct:   348 LTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLD 407

Query:   360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             +  N L G +P ++GEL  L+ + L  N L G IPSS              N+ +G IP 
Sbjct:   408 LGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPS 467

Query:   420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSL 479
             S+G+C  L+ L    NKL+G++P +L+ + +L V          G    ++G LK L++L
Sbjct:   468 SLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLLAL 526

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
             D+S N  SG+IP TL  C SLE+L +Q NSF   IP  +  L  +  LDLS+NNLSG IP
Sbjct:   527 DVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTIP 585

Query:   540 QYXXXXXXXXXXXXXXXXXEGKVPIE 565
             +Y                 +G VP E
Sbjct:   586 EYMANFSKLQNLNLSLNNFDGAVPTE 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 234/565 (41%), Positives = 343/565 (60%)

Query:     2 KSQLQD--PLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
             KSQ+ +     V +SWN+S   C W GVTCG RR+RV  L+L    + GV+SP +GNLSF
Sbjct:    39 KSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSF 98

Query:    60 PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
              R +NL + SF   IP +V  LFRLQ L ++ N   G+I + LS+CS +   + S+N L 
Sbjct:    99 LRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLG 158

Query:   120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
               +P E+G+L  L IL++++N+L G  PAS+GNL++LQ++D   N++ G IP  ++ +  
Sbjct:   159 HGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQ 218

Query:   180 LISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
             ++ F +A N FSG  P  +YNISSL+ + +  N F G+L  D G  LPNLR   +  N  
Sbjct:   219 MVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQF 278

Query:   239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
             TG++  +L+N ++L+  +I+ N  SG + ++F +L+NL  L +  N+LG  +++ L+FI 
Sbjct:   279 TGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIG 338

Query:   299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
              + NCT+LE LD+  NR GG LP S+ANLS T+T +  G N ISGTIP  I NLV+L  L
Sbjct:   339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398

Query:   359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIP 418
              +E+N L+G +P++ G+L +LQ++ L  N + G IPS               N+  G+IP
Sbjct:   399 SLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIP 458

Query:   419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVS 478
              S+G C+ L+ L    N+L+GT+P+++L I +L            GHFP EVG L+ LV 
Sbjct:   459 QSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSL-AYIDLSNNFLTGHFPEEVGKLELLVG 517

Query:   479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
             L  S N  SG++P  +GGC S+E+L MQ NSF  +IP  +S L S+  +D S NNLSG I
Sbjct:   518 LGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRI 576

Query:   539 PQYXXXXXXXXXXXXXXXXXEGKVP 563
             P+Y                 EG+VP
Sbjct:   577 PRYLASLPSLRNLNLSMNKFEGRVP 601

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 217/564 (38%), Positives = 331/564 (58%)

Query:     2 KSQLQD-PLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFP 60
             KSQ+ +    V SSWNNS  LC W  VTCG + +RVT L+L    +GG++SP +GN+SF 
Sbjct:    33 KSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFL 92

Query:    61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
              S++L + +F G IP EV NLFRL++L +  N   G I   LS+CS ++  +  +N L  
Sbjct:    93 ISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQ 152

Query:   121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P E+G+L  L IL++  N+LKG+LP S+GNL++L+ +    N + G +P  ++ +  +
Sbjct:   153 GVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQM 212

Query:   181 ISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
             +   ++ N+F G+ P  IYN+S+L+ +F+  + F GSL  D G  LPN+R  ++  N+L 
Sbjct:   213 VGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLV 272

Query:   240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
             G++  +LSN + LQ   IN N+ +G +  NF ++ +L  L+L EN LG+ T  DL+FI  
Sbjct:   273 GAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDS 332

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
             LTNCT L++L +   R GG LP S+AN+S  +  +    N   G+IP  I NL+ L  L 
Sbjct:   333 LTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQ 392

Query:   360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             +  N L G +P ++G+L  L +L L  N + G IPS               N+ +G +PP
Sbjct:   393 LGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPP 452

Query:   420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSL 479
             S+G C +++ L    NKL+GT+P++++ I TL V          G  P ++G+L+NLV L
Sbjct:   453 SLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-VNLSMEGNSLSGSLPNDIGSLQNLVKL 511

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
              + +N FSG +P TLG C ++E L +Q NSF  +IP+ +  L  +  +DLS N+LSG IP
Sbjct:   512 SLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDLSGSIP 570

Query:   540 QYXXXXXXXXXXXXXXXXXEGKVP 563
             +Y                  GKVP
Sbjct:   571 EYFANFSKLEYLNLSINNFTGKVP 594

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 225/566 (39%), Positives = 330/566 (58%)

Query:     2 KSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFP 60
             KSQ+ +D   V SSWN+S  LC W GVTCG + +RVT L+L +  +GGV+SP +GNLSF 
Sbjct:    33 KSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFL 92

Query:    61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
              S++L    F G IP EV  L RL+ L +  NY  G I   L +CS ++     +N+L  
Sbjct:    93 VSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGG 152

Query:   121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P E+G+L  L  LN+  N+++G+LP S+GNL+ L+++ +  N L G IPS ++ +  +
Sbjct:   153 SVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQI 212

Query:   181 ISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
              S  +  N FSG+ P  +YN+SSL+ + I  N F G L  D G+ LPNL  F++ GN  T
Sbjct:   213 WSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFT 272

Query:   240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
             GS+  +LSN + L+ L +N N  +G +   F  + NL  L L  N+LG+ ++ DL+F+T 
Sbjct:   273 GSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTS 331

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
             LTNCT+LE L +  NR GG LP S+ANLS  +  +  G   ISG+IP  I NL+NL  L 
Sbjct:   332 LTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLI 391

Query:   360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             ++ N L+G +P ++G+L +L+ L L  N L G IP+               N  +G +P 
Sbjct:   392 LDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPT 451

Query:   420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSL 479
             S+GNC +L+ L    NKL+GT+P +++ I  L +          G  P ++G L+NL +L
Sbjct:   452 SLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
              +  N  SG++P TLG C ++E L ++ N F   IP  L  L  + E+DLS N+LSG IP
Sbjct:   511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIP 569

Query:   540 QYXXXXXXXXXXXXXXXXXEGKVPIE 565
             +Y                 EGKVP++
Sbjct:   570 EYFASFSKLEYLNLSFNNLEGKVPVK 595

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 218/567 (38%), Positives = 319/567 (56%)

Query:     1 MKSQLQDPL-GVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSF 59
             +KSQ+ +      S+WNNS  LC W  V CG + +RVT LDL    +GGV+SP +GNLSF
Sbjct:    32 IKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSF 91

Query:    60 PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
                ++L N SF G IP E+ NLFRL+ L +  NY  G+I   LS+CS ++  +  +N L 
Sbjct:    92 LIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLG 151

Query:   120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
               +P E+G+L  L  L +  N LKG+ P  I NL++L  +++  N L G IP  I+ +  
Sbjct:   152 DGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQ 211

Query:   180 LISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
             ++S  +  N FSG+ P   YN+SSL+ +++  N F G+L  D G  LPN+   S+ GN L
Sbjct:   212 MVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFL 271

Query:   239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
             TG++  +L+N + L+   I  N  +G +S NF +L+NL  L L  N+LG+ +  DL F+ 
Sbjct:   272 TGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLAFLD 331

Query:   299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
              LTNC+ L  L +  NR GG LP S+ N+S  +T +    N I G+IP  I NL+ L +L
Sbjct:   332 ALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSL 391

Query:   359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIP 418
              +  N L G +P ++G L  L  L L  N   G IPS               N+ +G +P
Sbjct:   392 LLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVP 451

Query:   419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVS 478
             PS+G+C +++ L    NKL+GT+P++++ I TL V          G  P ++G L+NLV 
Sbjct:   452 PSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTL-VHLNMESNSLSGSLPNDIGRLQNLVE 510

Query:   479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
             L + +N  SG +P TLG C S+E + +Q+N F  +IP  +  L  +  +DLS NNLSG I
Sbjct:   511 LLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNLSGSI 569

Query:   539 PQYXXXXXXXXXXXXXXXXXEGKVPIE 565
              +Y                 EG+VP E
Sbjct:   570 SEYFENFSKLEYLNLSDNNFEGRVPTE 596

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 981 (350.4 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
 Identities = 220/559 (39%), Positives = 317/559 (56%)

Query:    13 SSWNNSIN--LCQWTGVTCGHRRQR----VTGLDLRQQSVGGVLSPFVGNLSFPRSINLP 66
             +SWN S +   C W GV CG RR+R    V  L LR  ++ G++SP +GNLSF R ++L 
Sbjct:    52 ASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLG 111

Query:    67 NKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI 126
             +    GEIP E+S L RLQ L L++N   G I   +  C+ +   + S+N+L   IP EI
Sbjct:   112 DNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREI 171

Query:   127 G-NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
             G +L  L  L + +N L G++P+++GNL++LQE D+  NRL G IPS++  + +L++ N+
Sbjct:   172 GASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNL 231

Query:   186 ARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244
              +N  SGMIP  I+N+SSL+   +  N+  G +P +    L  L    +  N   G +  
Sbjct:   232 GQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPA 291

Query:   245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
             S++NA++L  ++I GNLFSG ++  F RL+NL+ L L  N   T   +D  FI+ LTNC+
Sbjct:   292 SVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCS 351

Query:   305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
             KL+ L+L  N  GGVLP S +NLS +++ +A   N+I+G+IP  I NL+ L  L + +N 
Sbjct:   352 KLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNN 411

Query:   365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNC 424
               G++P ++G LK+L +L   EN L G+IP +              N   G IP ++ N 
Sbjct:   412 FRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNL 471

Query:   425 QNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSN 484
              NL+ L    N LSG +P +L +I TL +          G  P E+G+LKNLV     SN
Sbjct:   472 TNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESN 531

Query:   485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYXXX 544
               SG+IP TLG C  L YL +Q+N  + SIPS L  LK +  LDLS NNLSG IP     
Sbjct:   532 RLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLAD 591

Query:   545 XXXXXXXXXXXXXXEGKVP 563
                            G+VP
Sbjct:   592 ITMLHSLNLSFNSFVGEVP 610

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 178/502 (35%), Positives = 265/502 (52%)

Query:    63 INLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEI 122
             + L + +  G I   + NL  L+ L L++N+ SGKI  +LS  S + +   + N L  EI
Sbjct:    83 LRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEI 142

Query:   123 PVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS 182
             P  +GNL  L +L +  N L G +P+S+G L+ L ++ +  N L G IPS+   +R L  
Sbjct:   143 PAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSF 202

Query:   183 FNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS 241
              ++A N  SG IP  I+NISSL    + +N+  G+LP +   NLP+L+   +  N   G 
Sbjct:   203 LSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGR 262

Query:   242 LQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLT 301
             +  S+ NA+N+    I  N FSG V     R++NL RL L E        ND  F+T LT
Sbjct:   263 IPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALT 322

Query:   302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361
             NC+ L+ ++L   +FGGVLP S++NLS ++  ++   N+ISG++P  I NLVNL  L + 
Sbjct:   323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382

Query:   362 SNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSI 421
             +N L G++P +  +LK+L+ L ++ N L G++P +            + N   G IP ++
Sbjct:   383 NNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTL 442

Query:   422 GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDI 481
             GN   L  +    N   G +P ++  I  L            G  P E+G LKN+V    
Sbjct:   443 GNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHA 502

Query:   482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541
              SN  SGE P+T+G C  L++L +Q+N    SIP  L+ LK +  LDLS NNLSG IP  
Sbjct:   503 DSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMS 562

Query:   542 XXXXXXXXXXXXXXXXXEGKVP 563
                               G+VP
Sbjct:   563 LGDMPLLHSLNLSFNSFHGEVP 584

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 4.2e-74, P = 4.2e-74
 Identities = 186/560 (33%), Positives = 268/560 (47%)

Query:     7 DPLGVTSSWN--NSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSIN 64
             DPLGV S W    S+  C WTG+TC      V  + L ++ + GVLSP + NL++ + ++
Sbjct:    44 DPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIANLTYLQVLD 102

Query:    65 LPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPV 124
             L + SF G+IP E+  L  L  L L  NYFSG I + +    N+   +  NN L  ++P 
Sbjct:   103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPE 162

Query:   125 EIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
             EI     L ++    N+L G++P  +G+L  LQ     GN L G IP +I  + NL   +
Sbjct:   163 EICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLD 222

Query:   185 VARNQFSGMIPLIY-NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ 243
             ++ NQ +G IP  + N+ +LQ + +  N   G +P + G N  +L    +  N LTG + 
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTGKIP 281

Query:   244 DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
               L N   LQ L I  N  +  +  +  RL  L+ L L EN+L    + ++ F+      
Sbjct:   282 AELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE----- 336

Query:   304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
               LEVL LHSN F G  P S+ NL   +T +  G N ISG +P  +  L NL  L    N
Sbjct:   337 -SLEVLTLHSNNFTGEFPQSITNLR-NLTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query:   364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGN 423
              L G IP +I     L++L L+ N + G IP                N+  G+IP  I N
Sbjct:   395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGR-NHFTGEIPDDIFN 453

Query:   424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISS 483
             C NL  L+   N L+GT+   +  +  L +          G  P E+GNLK+L  L + S
Sbjct:   454 CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT-GPIPREIGNLKDLNILYLHS 512

Query:   484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYXX 543
             N F+G IP  +   T L+ L M  N     IP  +  +K ++ LDLS N  SG IP    
Sbjct:   513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query:   544 XXXXXXXXXXXXXXXEGKVP 563
                             G +P
Sbjct:   573 KLESLTYLSLQGNKFNGSIP 592

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 4.4e-66, P = 4.4e-66
 Identities = 171/532 (32%), Positives = 279/532 (52%)

Query:    13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRG 72
             +SWN S   C WTGVTC    + VT LDL   ++ G LS  V +L   ++++L      G
Sbjct:    48 TSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISG 107

Query:    73 EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSH-CSNVMKFEASNNKLEAEIPVEIGNLLM 131
              IP ++SNL+ L++L L+NN F+G    +LS    N+   +  NN L  ++PV + NL  
Sbjct:   108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQ 167

Query:   132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR-NQF 190
             L+ L++  N+  G++PA+ G    L+ + V GN L G+IP  I ++  L    +   N F
Sbjct:   168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query:   191 -SGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
              +G+ P I N+S L           G +P + G  L  L    +  N  TG++   L   
Sbjct:   228 ENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGLI 286

Query:   250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
             ++L+ ++++ N+F+G++  +FS+L+NL+ LNL  N L  G   +  FI  +    +LEVL
Sbjct:   287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKL-YGAIPE--FIGEMP---ELEVL 340

Query:   310 DLHSNRFGGVLPFSLA-NLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
              L  N F G +P  L  N  + + +++  SN+++GT+P  + +   L  L    N L G+
Sbjct:   341 QLWENNFTGSIPQKLGENGRLVILDLS--SNKLTGTLPPNMCSGNRLMTLITLGNFLFGS 398

Query:   369 IPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQ-NL 427
             IP ++G+ +SL  + + ENFL G+IP              + N L G++P S G    +L
Sbjct:   399 IPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDL 458

Query:   428 ILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFS 487
               ++   N+LSG++P  + ++  +            G  P E+G L+ L  LD S N+FS
Sbjct:   459 GQISLSNNQLSGSLPAAIGNLSGVQ-KLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFS 517

Query:   488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
             G I   +  C  L ++ +  N  +  IP+ L+ +K +  L+LSRN+L G IP
Sbjct:   518 GRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIP 569

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 4.9e-66, P = 4.9e-66
 Identities = 169/539 (31%), Positives = 275/539 (51%)

Query:     4 QLQDPLGVTSSWNN-SINLCQWTGVTCGHRRQ-RVTGLDLRQQSVGGVLSPFVGNLSFPR 61
             Q  DPL     WN+ +IN C WTGVTC +    RV  L+L    + G +SP+ G      
Sbjct:    42 QEDDPL---RQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLI 98

Query:    62 SINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAE 121
              ++L + +  G IP  +SNL  L++L L +N  +G+I + L    N+      +N+L  +
Sbjct:    99 HLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGD 158

Query:   122 IPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181
             IP  +GNL+ LQ+L +A   L G +P+ +G L  +Q + ++ N L G IP+ + +  +L 
Sbjct:   159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query:   182 SFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
              F  A N  +G IP  +  + +L+ + +  N   G +P   G  +  L+Y S+  N L G
Sbjct:   219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG-EMSQLQYLSLMANQLQG 277

Query:   241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLL 300
              +  SL++  NLQ L+++ N  +G++   F  +  L  L L  N+L +G+       ++ 
Sbjct:   278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHL-SGSLPK----SIC 332

Query:   301 TNCTKLEVLDLHSNRFGGVLPFSLANL-SITMTEIANGSNQISGTIPDVIANLVNLNALG 359
             +N T LE L L   +  G +P  L+   S+   +++N  N ++G+IP+ +  LV L  L 
Sbjct:   333 SNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSN--NSLAGSIPEALFELVELTDLY 390

Query:   360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             + +N L GT+  +I  L +LQ L L  N L G +P                N   G+IP 
Sbjct:   391 LHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQ 450

Query:   420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSL 479
              IGNC +L ++    N   G +P  +  +  L +          G  PA +GN   L  L
Sbjct:   451 EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG-LPASLGNCHQLNIL 509

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
             D++ N  SG IP++ G    LE L + +NS   ++P +L SL+++T ++LS N L+G I
Sbjct:   510 DLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01840019 hypothetical protein (1008 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	566
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-88
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  291 bits (747), Expect = 7e-88
 Identities = 193/569 (33%), Positives = 312/569 (54%), Gaps = 25/569 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPR 61
           KS + DPL   S+WN+S ++C W G+TC +   RV  +DL  +++ G +S  +  L + +
Sbjct: 38  KSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQ 96

Query: 62  SINLPNKSFRGEIPHEVSNL-FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
           +INL N    G IP ++      L+ L L+NN F+G I        N+   + SNN L  
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG 154

Query: 121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
           EIP +IG+   L++L++  N L G++P S+ NL++L+ + +  N+L G+IP  +  +++L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
               +  N  SG IP  I  ++SL ++ +  N   G +P   G NL NL+Y  +  N L+
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS 273

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
           G +  S+ +   L  L+++ N  SG++     +LQNL  L+L  NN  TG          
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-TGK-----IPVA 327

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           LT+  +L+VL L SN+F G +P +L   +  +T +   +N ++G IP+ + +  NL  L 
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           + SN L G IP ++G  +SL+ + L +N   G +PS    L L+  L +  NNLQG+I  
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 420 SIGNCQNLILLTTRKNKLSGTVP-----RQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK 474
              +  +L +L+  +NK  G +P     ++L +       LDLS N  +G  P ++G+L 
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN-------LDLSRNQFSGAVPRKLGSLS 499

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
            L+ L +S N  SGEIP  L  C  L  L +  N  +  IP++ S +  +++LDLS+N L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 535 SGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
           SG IP+ L N+  L  +N+S+NH  G +P
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  176 bits (449), Expect = 4e-47
 Identities = 138/416 (33%), Positives = 196/416 (47%), Gaps = 61/416 (14%)

Query: 152 NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIH 209
           N S +  ID+ G  + G+I S I  +  + + N++ NQ SG IP  +    SSL+Y+ + 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 210 TNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN 269
            N F GS+P     ++PNL    +S N L+G + + + + ++L+ L++ GN+  GK+  +
Sbjct: 127 NNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
                                         LTN T LE L L                  
Sbjct: 184 ------------------------------LTNLTSLEFLTL------------------ 195

Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL 389
                   SNQ+ G IP  +  + +L  + +  N L+G IP  IG L SL  L L  N L
Sbjct: 196 -------ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 390 RGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHII 449
            G IPSSLGNL  L  L L  N L G IPPSI + Q LI L    N LSG +P  ++ + 
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 450 TLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS 509
            L +L   S+N   G  P  + +L  L  L + SN FSGEIP  LG   +L  L +  N+
Sbjct: 309 NLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
            T  IP  L S  ++ +L L  N+L G IP+ L     L  + L  N F G++P E
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (362), Expect = 6e-36
 Identities = 96/265 (36%), Positives = 147/265 (55%), Gaps = 5/265 (1%)

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV-NLNALG 359
            N +++  +DL      G +  ++  L    T I   +NQ+SG IPD I     +L  L 
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQT-INLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           + +N   G+IP   G + +L+ L L+ N L G IP+ +G+ + L  L L  N L GKIP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
           S+ N  +L  LT   N+L G +PR+L  + +L   + L  N L+G  P E+G L +L  L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
           D+  N  +G IP++LG   +L+YL +  N  +  IP ++ SL+ +  LDLS N+LSG IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 540 QYLENLSFLSFLNLSYNHFEGKVPI 564
           + +  L  L  L+L  N+F GK+P+
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  117 bits (294), Expect = 2e-27
 Identities = 99/343 (28%), Positives = 164/343 (47%), Gaps = 38/343 (11%)

Query: 34  QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY 93
           Q++  LDL   S+ G +   V  L     ++L + +F G+IP  +++L RLQ L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 94  FSGKILTDLSHCSNVMKFEAS------------------------NNKLEAEIPVEIGNL 129
           FSG+I  +L   +N+   + S                        +N LE EIP  +G  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQ 189
             L+ + + +N   G+LP+    L  +  +D+  N L GRI S    + +L   ++ARN+
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 190 FSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
           F G +P  +    L+ + +  N+F G++P   G +L  L    +S N L+G + D LS+ 
Sbjct: 464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSC 522

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL-GTGTANDLDFITLLTNCTKLEV 308
             L  L+++ N  SG++  +FS +  LS+L+L +N L G    N       L N   L  
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN-------LGNVESLVQ 575

Query: 309 LDLHSNRFGGVLPFSLANLSITMTEIAN-----GSNQISGTIP 346
           +++  N   G LP + A L+I  + +A      G +  SG  P
Sbjct: 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPP 618

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 24/112 (21%)

Query: 63  INLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEI 122
           + L N+  RG IP+++S L  LQ++ L                        S N +   I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINL------------------------SGNSIRGNI 458

Query: 123 PVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
           P  +G++  L++L+++ N   G +P S+G L++L+ +++ GN L GR+P+ +
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 38/91 (41%), Positives = 54/91 (59%)

Query: 355 LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           ++ LG+++  L G IP  I +L+ LQ + L+ N +RG IP SLG++T L  L L  N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 415 GKIPPSIGNCQNLILLTTRKNKLSGTVPRQL 445
           G IP S+G   +L +L    N LSG VP  L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 339 NQ-ISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
           NQ + G IP+ I+ L +L ++ +  N + G IP ++G + SL++L L+ N   G+IP SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 398 GNLTLLTQLILEVNNLQGKIPPSIG 422
           G LT L  L L  N+L G++P ++G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 36/85 (42%), Positives = 52/85 (61%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           L L +  L G  P ++  L++L S+++S N   G IP +LG  TSLE L +  NSF  SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
           P +L  L S+  L+L+ N+LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 32  RRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTN 91
             +R+  LDL +    G +   +G+LS    + L      GEIP E+S+  +L +L L++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 92  NYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG 151
           N  SG+I    S    + + + S N+L  EIP  +GN+  L  +NI+ NHL G LP S G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STG 591

Query: 152 NLSALQEIDVRGN 164
              A+    V GN
Sbjct: 592 AFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 7e-11
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 33/158 (20%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQ---WTGVTCGHRRQR----VTGLDLRQQSVGGVLSPF 53
           +KS L  PL     WN    + Q   W+G  C     +    + GL L  Q + G +   
Sbjct: 380 LKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND 437

Query: 54  VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113
           +  L   +SINL   S RG IP  + ++  L+ L L+ N F+G                 
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG----------------- 480

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG 151
                   IP  +G L  L+ILN+  N L G++PA++G
Sbjct: 481 -------SIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 25/115 (21%)

Query: 382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTV 441
           L L+   LRG IP+ +  L  L  + L  N+++G IPPS+G+                  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ 464

Query: 442 PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG 496
                  IT   +LDLS N  NG  P  +G L +L  L+++ N  SG +P  LGG
Sbjct: 465 -------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 9e-10
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query: 115 NNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
           N  L   IP +I  L  LQ +N++ N ++G +P S+G++++L+ +D+  N   G IP ++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 175 SHVRNLISFNVARNQFSGMIP 195
             + +L   N+  N  SG +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 309 LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
           L L +    G +P  ++ L   +  I    N I G IP  + ++ +L  L +  N   G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
           IP ++G+L SL++L LN N L G +P++LG   L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           ++LS N + G+ P  +G++ +L  LD+S N F+G IP +LG  TSL  L +  NS +  +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 515 PSTL 518
           P+ L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
           L +    L+G +P  I  L  LQ I++ GN + G IP ++  + +L   +++ N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 195 P-LIYNISSLQYIFIHTNRFHGSLP 218
           P  +  ++SL+ + ++ N   G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 26/102 (25%)

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVN 224
           L G IP+ IS +R+L S N++ N   G IP  + +I+SL+ + +  N F+GS+P      
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP------ 483

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKV 266
                              +SL   T+L+ L +NGN  SG+V
Sbjct: 484 -------------------ESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 9/265 (3%)

Query: 50  LSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVM 109
            S  + NL    S++L     R  I   +  L  L +L L NN  +          SN+ 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 110 KFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
           + + S+NK+E  +P  + NL  L+ L+++ N L   LP  + NLS L  +D+ GN++   
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 170 IPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLR 229
           +P  I  +  L   +++ N    ++  + N+ +L  + +  N+       ++  NL NL 
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLE 258

Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
              +S N ++     SL + TNL+ L+++GN  S       + L  L  L L        
Sbjct: 259 TLDLSNNQISSI--SSLGSLTNLRELDLSGNSLS-NALPLIALLLLLLELLLNLLLTLKA 315

Query: 290 TANDLDFITLLTNCTKLEVLDLHSN 314
               L+ I L  N            
Sbjct: 316 LELKLNSILLNNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 562
           LG+ +      IP+ +S L+ +  ++LS N++ G+IP  L +++ L  L+LSYN F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 563 P 563
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 21/324 (6%)

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLN 280
           N +NL  L    ++ N L  ++   L   TNL  L+++ N  +    +      NL  L+
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD 146

Query: 281 LGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQ 340
           L +N +           + L N   L+ LDL  N     LP  L+NLS       +G N+
Sbjct: 147 LSDNKI-------ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG-NK 197

Query: 341 ISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400
           IS  +P  I  L  L  L + +N +   +  ++  LK+L  L L+ N L   +P S+GNL
Sbjct: 198 IS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN 460
           + L  L  +++N Q     S+G+  NL  L    N LS  +P   L ++ L +LL+L   
Sbjct: 255 SNLETL--DLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 461 LLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS 520
           L       E+     L++ +I SN      P  L    SL  L   DN+   S  +    
Sbjct: 313 LK----ALELKLNSILLNNNILSNGE-TSSPEALSILESLNNLWTLDNALDESNLNRY-I 366

Query: 521 LKSITELDLSRNNLSGHIPQYLEN 544
           +K+   +    + +  H+ Q LE 
Sbjct: 367 VKNPNAIGSLLDLVKKHVNQLLEK 390

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 1  MKSQLQ-DPLGVTSSWN-NSINLCQWTGVTC 29
           KS L  DP G  SSWN +S + C WTGVTC
Sbjct: 11 FKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 40/250 (16%)

Query: 347 DVIANLVNLNALGVESNQLAGTIPLAIGEL----KSLQMLFLNENFLRGT------IPSS 396
           +++  L+ L  L +E N L      A+        SL+ L L+ N           +   
Sbjct: 17  ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76

Query: 397 LGNLTLLTQLILEVNNLQGKIPPSIGNC------QNLIL----LTTRKNKLSGTVPRQLL 446
           L     L +L L  N L       + +       Q L L    L  R  +L     + L 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 447 HIITLPVLLDLSDNLLNGHFPAEVGNL----KNLVSLDISSNMFSGE-IPTTLGG---CT 498
             +     L L  N L G     +       ++L  L++++N      I     G     
Sbjct: 137 PALEK---LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193

Query: 499 SLEYLGMQDNSFTR----SIPSTLSSLKSITELDLSRNNLSGHI-----PQYLENLSFLS 549
           +LE L + +N  T     ++  TL+SLKS+  L+L  NNL+           L     L 
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253

Query: 550 FLNLSYNHFE 559
            L+LS N   
Sbjct: 254 TLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 21/62 (33%), Positives = 41/62 (66%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
           L +L+  ++SGN++ G++  SL + T+L+ L+++ N F+G +  +  +L +L  LNL  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 285 NL 286
           +L
Sbjct: 501 SL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 73/182 (40%), Positives = 102/182 (56%), Gaps = 9/182 (4%)

Query: 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN-CQNLILLTTRK 434
           L  L  L LN N LR  I S L  LT LT L L+ NN+   IPP IG    NL  L    
Sbjct: 92  LLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSD 149

Query: 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTL 494
           NK+  ++P  L ++  L  L DLS N L+   P  + NL NL +LD+S N  S ++P  +
Sbjct: 150 NKIE-SLPSPLRNLPNLKNL-DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI 205

Query: 495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 554
              ++LE L + +NS    + S+LS+LK+++ L+LS NN    +P+ + NLS L  L+LS
Sbjct: 206 ELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLS 263

Query: 555 YN 556
            N
Sbjct: 264 NN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
           NL SLD+S+N  +        G  +L+ L +  N+ T   P   S L S+  LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
           +L+ L + +N  T         L ++  LDLS NNL+   P+    L  L  L+LS N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.01
PLN03150	623	hypothetical protein; Provisional	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG4341	483	consensus F-box protein containing LRR [General fu	98.34
KOG4341	483	consensus F-box protein containing LRR [General fu	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.8
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.62
KOG4308	478	consensus LRR-containing protein [Function unknown	95.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.55
KOG4308	478	consensus LRR-containing protein [Function unknown	94.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.52
smart00370	26	LRR Leucine-rich repeats, outliers.	88.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.6e-65  Score=564.10  Aligned_cols=552  Identities=34%  Similarity=0.563  Sum_probs=511.0

Q ss_pred             CccCCCCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcccc-
Q 040451            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVS-   79 (566)
Q Consensus         1 ~~~~~~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-   79 (566)
                      ||+.+.||.+++.+|+..++||.|.|++|... ++|+.|+|+++++.+.++..+..+++|++|+|++|.+.+.+|..+. 
T Consensus        37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~  115 (968)
T PLN00113         37 FKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT  115 (968)
T ss_pred             HHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence            56777789999999999999999999999865 7999999999999999999999999999999999999988987754 


Q ss_pred             CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451           80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI  159 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  159 (566)
                      .+++|++|++++|.+++..|.  ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            899999999999999876664  568999999999999988899999999999999999999988899999999999999


Q ss_pred             EeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451          160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      ++++|.+.+..|..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l  272 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL  272 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence            99999999889999999999999999999988544 7789999999999999999888887766 899999999999999


Q ss_pred             ccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccc
Q 040451          239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG  318 (566)
Q Consensus       239 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (566)
                      ....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+      ..+..+++|+.|++++|.+.+
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCEEECcCCCCcC
Confidence            88888889999999999999999988888889999999999999999877655      567789999999999999998


Q ss_pred             ccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcccc
Q 040451          319 VLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLG  398 (566)
Q Consensus       319 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  398 (566)
                      ..|..+... .+++.+++++|.+.+..|..+..+++|+.|++.+|.+.+..+..+..+++|++|++++|.+++..|..+.
T Consensus       347 ~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~  425 (968)
T PLN00113        347 EIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT  425 (968)
T ss_pred             cCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence            888887775 6999999999999999999999999999999999999989999999999999999999999988999999


Q ss_pred             CCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCE
Q 040451          399 NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS  478 (566)
Q Consensus       399 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~  478 (566)
                      .++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. . ..++.|++++|++.+..|..+..+++|+.
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCCccCCccChhhhhhhccCE
Confidence            999999999999999998888888999999999999999877776543 3 34599999999999999999999999999


Q ss_pred             EEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451          479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  558 (566)
Q Consensus       479 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  558 (566)
                      |++++|.+.+.+|+.+..+++|++|+|++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 040451          559 EGKVPIE  565 (566)
Q Consensus       559 ~~~~p~~  565 (566)
                      .+.+|..
T Consensus       584 ~~~~p~~  590 (968)
T PLN00113        584 HGSLPST  590 (968)
T ss_pred             eeeCCCc
Confidence            9999963

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-54  Score=479.64  Aligned_cols=511  Identities=29%  Similarity=0.474  Sum_probs=467.9

Q ss_pred             CcEEEEEcCCCCCcccCcccCc-CCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVG-NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE  112 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  112 (566)
                      .+++.|+|++|.+.+.+|..+. ++++|++|+|++|.+.+.+|.  +.+++|++|++++|.+++..|..+..+++|++|+
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            6899999999999988887654 999999999999999988885  5689999999999999888899999999999999


Q ss_pred             ccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451          113 ASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG  192 (566)
Q Consensus       113 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      +++|.+.+.+|..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            99999988899999999999999999999998899999999999999999999998999999999999999999999875


Q ss_pred             ch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccccccccccc
Q 040451          193 MI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFS  271 (566)
Q Consensus       193 ~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  271 (566)
                      .. ..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+....|..+..+++|+.|++++|.+.+..+..+.
T Consensus       251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             ccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            54 7889999999999999999888887776 889999999999999988888899999999999999999988888899


Q ss_pred             CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhc
Q 040451          272 RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIAN  351 (566)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~  351 (566)
                      .+++|+.|++++|.+.+..+      ..+..+++|+.|++++|.+.+..|..+... ..++.+++.+|.+.+..|..+..
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhC
Confidence            99999999999999876655      567788999999999999998888877764 58999999999999999999999


Q ss_pred             cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEE
Q 040451          352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT  431 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+ ..++|+.|+
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence            9999999999999998899999999999999999999998888888899999999999999998887765 458999999


Q ss_pred             ccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       432 l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      +++|.+.+..|..+..+..+ +.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus       482 ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             CcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence            99999998888888877766 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451          512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      +.+|..+..+++|+.|++++|++.+.+|.. ..+..+....+.+|+
T Consensus       561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        561 GEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             ccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999999999999999999999999888865 334455555566664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-37  Score=292.81  Aligned_cols=364  Identities=22%  Similarity=0.233  Sum_probs=229.0

Q ss_pred             CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEccc
Q 040451          132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHT  210 (566)
Q Consensus       132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~  210 (566)
                      -+.|++++|++....+..|.++++|+.+++.+|.++ .+|.......+|+.|++.+|.|..+. ..+..++.|+.||++.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            345777777777666677777777777777777776 56665555566777777777777666 6666677777777777


Q ss_pred             CcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCC
Q 040451          211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT  290 (566)
Q Consensus       211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (566)
                      |.++ .++..-+..-+++++|++++|.|+......|..+.+|.+|.+++|+++...+..|+.+++|+.|++..|.+....
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            7776 555554445567888888888888777777777778888888888887666666777777777777776664432


Q ss_pred             CCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccch
Q 040451          291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP  370 (566)
Q Consensus       291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  370 (566)
                      .      ..|.++++|+.|.+..|.+..                         .-...|..+.++++|++..|++...-.
T Consensus       238 ~------ltFqgL~Sl~nlklqrN~I~k-------------------------L~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  238 G------LTFQGLPSLQNLKLQRNDISK-------------------------LDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             h------hhhcCchhhhhhhhhhcCccc-------------------------ccCcceeeecccceeecccchhhhhhc
Confidence            2      344555555555555554431                         112334555566666666666555444


Q ss_pred             hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCC
Q 040451          371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT  450 (566)
Q Consensus       371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  450 (566)
                      ..+.++.+|+.|+++.|.|...-+......++|++|+|++|+++...+.+|..+..|+.|+++.|.+             
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-------------  353 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI-------------  353 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch-------------
Confidence            5555556666666666655544455555555555555555555544445555555555555555554             


Q ss_pred             cCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC---cCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEE
Q 040451          451 LPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP---TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITEL  527 (566)
Q Consensus       451 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  527 (566)
                                  .......|..+++|++||+++|.++..+.   ..|.++++|++|++.+|++....-..|..++.|+.|
T Consensus       354 ------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  354 ------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             ------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence                        43333456666666666666666654432   345666666666666666664444556666666777


Q ss_pred             eCCCCcccccCCccCcCCCCCCeeeCC
Q 040451          528 DLSRNNLSGHIPQYLENLSFLSFLNLS  554 (566)
Q Consensus       528 ~l~~n~~~~~~~~~l~~~~~L~~L~l~  554 (566)
                      ||.+|.|..+.|+.|..+ .|++|-+.
T Consensus       422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  422 DLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             cCCCCcceeecccccccc-hhhhhhhc
Confidence            777666666666666655 56666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-40  Score=301.22  Aligned_cols=493  Identities=24%  Similarity=0.367  Sum_probs=298.5

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .....+.++.|.+.. +.+.+.++..+++|+++.|+.. ..|.+++++..++.++.++|.++ .+|+.+..+..|+.++.
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            456667888888763 4556788888899999888888 88888888888899999998887 78888888889999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+. .++++++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++. ..|...-+++.|+++|...|.+...
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcC
Confidence            988887 67888888888999988888888 78888888888888999888887 4555444588899999888888888


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      ++.++.+.+|+-|+++.|.+. .+| .+. .|..|++++++.|.+.-...+...+++++..||+..|+++ ..|..+.-+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            888888888888888888887 666 444 7888888888888887444444557888888888888887 566667778


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~  353 (566)
                      .+|++|++++|.++..++       .++++ +|+.|-+.+|.+...--+.+..-  .-+.+..-...+...   .++.- 
T Consensus       275 rsL~rLDlSNN~is~Lp~-------sLgnl-hL~~L~leGNPlrTiRr~ii~~g--T~~vLKyLrs~~~~d---glS~s-  340 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPY-------SLGNL-HLKFLALEGNPLRTIRREIISKG--TQEVLKYLRSKIKDD---GLSQS-  340 (565)
T ss_pred             hhhhhhcccCCccccCCc-------ccccc-eeeehhhcCCchHHHHHHHHccc--HHHHHHHHHHhhccC---CCCCC-
Confidence            888888888888877665       45666 78888888887652211111110  000000001111000   00000 


Q ss_pred             CCCEEecCCcc-ccccchhhccCCCCCCEEEccCCcccccCCccccCCCC---CCeEecccCcceecCCccccCCCCCcE
Q 040451          354 NLNALGVESNQ-LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL---LTQLILEVNNLQGKIPPSIGNCQNLIL  429 (566)
Q Consensus       354 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~l~~~~~~~~~~~~~L~~  429 (566)
                        +.=.-..-. ..+.. .+....-+.+.|++++-+++ ..|.......+   ....+++.|++. ++|..+..+..+.+
T Consensus       341 --e~~~e~~~t~~~~~~-~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT  415 (565)
T KOG0472|consen  341 --EGGTETAMTLPSESF-PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT  415 (565)
T ss_pred             --cccccccCCCCCCcc-cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence              000000000 00000 01112233444444444444 22222211111   334444444444 33333333333322


Q ss_pred             EEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451          430 LTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS  509 (566)
Q Consensus       430 L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  509 (566)
                      .-+..++..+.+|..+..++.+ ..|++++|.+. .+|..++.+..|+.|+++.|++. ..|.++-.+..++.+-.++|+
T Consensus       416 ~l~lsnn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  416 DLVLSNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHhhcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence            2222222222333333333333 44444444444 33444444555555555555554 455544444445555555555


Q ss_pred             ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       510 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      +....++++.++.+|.+||+.+|.+. .+|..++++.+|++|+++||++.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            55444445555555555555555555 44455555555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=288.16  Aligned_cols=392  Identities=20%  Similarity=0.226  Sum_probs=330.8

Q ss_pred             CcEEEEEcCCCCCcccCcccC-cCC-CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEE
Q 040451           34 QRVTGLDLRQQSVGGVLSPFV-GNL-SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKF  111 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l-~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  111 (566)
                      ...+-+|.++..+...--..+ +-+ +..+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|
T Consensus        52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL  130 (873)
T ss_pred             CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence            467778888777653211112 222 34678999999998666667889999999999999988 678777777889999


Q ss_pred             EccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccc
Q 040451          112 EASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS  191 (566)
Q Consensus       112 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      +|.+|.|...-.+.+..++.||.|||+.|.|+..-...+..-.++++|++++|+|+..-...|..+.+|..|.+++|+++
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            99999998766778889999999999999998555556667789999999999999777788999999999999999999


Q ss_pred             cch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccc
Q 040451          192 GMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINF  270 (566)
Q Consensus       192 ~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  270 (566)
                      .++ ..+.++++|+.|++..|.+. .+....|++++.|+.+.+..|++......+|..+.++++|+++.|++......++
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l  289 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL  289 (873)
T ss_pred             ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence            998 56666999999999999886 4445556689999999999999988888889999999999999999988888899


Q ss_pred             cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451          271 SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA  350 (566)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  350 (566)
                      .++..|+.|+++.|.+......      ..+.+++|++|++++|+++...+..+..+ ..|++|.++.|.+.......|.
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d------~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHID------SWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             cccchhhhhccchhhhheeecc------hhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHH
Confidence            9999999999999999888774      44568899999999999997777777776 4899999999999887778899


Q ss_pred             ccCCCCEEecCCccccccc---hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCC
Q 040451          351 NLVNLNALGVESNQLAGTI---PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL  427 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L  427 (566)
                      .+.+|++|+++.|.+...+   ...|.++++|++|.+.||++..+....|..++.|++|+|.+|.|...-+.+|..+ +|
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L  441 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL  441 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh
Confidence            9999999999999887554   3467789999999999999996667789999999999999999998999999998 88


Q ss_pred             cEEEccCC
Q 040451          428 ILLTTRKN  435 (566)
Q Consensus       428 ~~L~l~~~  435 (566)
                      +.|.++.-
T Consensus       442 k~Lv~nSs  449 (873)
T KOG4194|consen  442 KELVMNSS  449 (873)
T ss_pred             hhhhhccc
Confidence            88887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-40  Score=299.88  Aligned_cols=468  Identities=22%  Similarity=0.315  Sum_probs=369.3

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      ...++++++.|.+. .+|++++++..++.++.+.|++. .+|..++....++.+++++|.+. .++..++.+..|+.++.
T Consensus        68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            45788899999987 58889999999999999999998 99999999999999999999988 78999999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      .+|++. ..|.++..+.+|..+++.+|+++ ..|+..-+++.|++||...|.+. .+|..++.+..|..|++..|++...
T Consensus       145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l  221 (565)
T KOG0472|consen  145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL  221 (565)
T ss_pred             cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC
Confidence            999998 78999999999999999999999 56666666999999999999887 8999999999999999999999877


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      + .+..|+.|+++.+..|.+. .+|....++++.+..|++..|+++ ..|+.+.-+.+|+.||+++|.++ ..|..++++
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            6 7888999999999999887 888888889999999999999999 67888888999999999999998 677789999


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCC---CCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCT---KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA  350 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  350 (566)
                       +|+.|.+.+|.+.+....       +-+++   -|++|+=   .+.+..+..-..  .+...-+.    .. .......
T Consensus       298 -hL~~L~leGNPlrTiRr~-------ii~~gT~~vLKyLrs---~~~~dglS~se~--~~e~~~t~----~~-~~~~~~~  359 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRRE-------IISKGTQEVLKYLRS---KIKDDGLSQSEG--GTETAMTL----PS-ESFPDIY  359 (565)
T ss_pred             -eeeehhhcCCchHHHHHH-------HHcccHHHHHHHHHH---hhccCCCCCCcc--cccccCCC----CC-Ccccchh
Confidence             999999999987653221       11111   0111100   000000000000  00000000    00 1111233


Q ss_pred             ccCCCCEEecCCccccccchhhcc--CCCCCCEEEccCCcccccCCccccCCCCCCe-EecccCcceecCCccccCCCCC
Q 040451          351 NLVNLNALGVESNQLAGTIPLAIG--ELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ-LILEVNNLQGKIPPSIGNCQNL  427 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~~~~~~~L  427 (566)
                      .+.+.+.|++++-+++..-.+.|.  .-.-.+.+++++|++. ++|..+..++.+.+ +.+++|.+. .+|..++.+++|
T Consensus       360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL  437 (565)
T KOG0472|consen  360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL  437 (565)
T ss_pred             hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc
Confidence            456678888888777754334443  2234778899999887 77877777776655 455555555 777888889999


Q ss_pred             cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451          428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  507 (566)
                      +.|++++|.+. .+|..++.+..+ +.++++.|+|. ..|..+.....++.+-.++|.+....++.+.+|..|.+||+.+
T Consensus       438 t~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  438 TFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             eeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence            99999988887 888888888885 89999999888 5677777777788888888998855666799999999999999


Q ss_pred             CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          508 NSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |++. .+|..++++.+|+.|++.+|+|.
T Consensus       515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhccccceeEEEecCCccC
Confidence            9998 68889999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-36  Score=299.20  Aligned_cols=482  Identities=26%  Similarity=0.308  Sum_probs=373.6

Q ss_pred             EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcc
Q 040451           39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKL  118 (566)
Q Consensus        39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~  118 (566)
                      +|.+...+. .+|..+..-..++.|+++.|.+...-.+.+.+.-+|++||+++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            555665555 45655655666888999888766321233444555999999999888 6788899999999999999998


Q ss_pred             cccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhh
Q 040451          119 EAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY  198 (566)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~  198 (566)
                      . ..|.+..++.+|++++|..|... .+|..+..+++|++|+++.|.+. ..|..+..+..+..+..++|...   ..++
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~---~~lg  154 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI---QRLG  154 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh---hhhc
Confidence            7 67888899999999999999988 78999999999999999999987 78888888899999998888211   1222


Q ss_pred             CCCCCcEEEcccCcCcccCCccccCCCCCcc-EEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCC
Q 040451          199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLR-YFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS  277 (566)
Q Consensus       199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  277 (566)
                      .. .++++++..+.+.+.++....    .++ .+++.+|.+. .  ..+..++.|+.+....|.+....    ..-++++
T Consensus       155 ~~-~ik~~~l~~n~l~~~~~~~i~----~l~~~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~  222 (1081)
T KOG0618|consen  155 QT-SIKKLDLRLNVLGGSFLIDIY----NLTHQLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLT  222 (1081)
T ss_pred             cc-cchhhhhhhhhcccchhcchh----hhheeeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchh
Confidence            22 278888888888777766544    444 4999999887 2  23567788888888888765322    2456888


Q ss_pred             EEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCE
Q 040451          278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNA  357 (566)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~  357 (566)
                      .|+.+.|.+.....        -....+|++++++.++++.. |.++... .+++.+....|.++ .+|..+....+|+.
T Consensus       223 ~L~a~~n~l~~~~~--------~p~p~nl~~~dis~n~l~~l-p~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  223 ALYADHNPLTTLDV--------HPVPLNLQYLDISHNNLSNL-PEWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVS  291 (1081)
T ss_pred             eeeeccCcceeecc--------ccccccceeeecchhhhhcc-hHHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHH
Confidence            88988888763322        22346899999999998844 4666654 69999999999985 67888888899999


Q ss_pred             EecCCccccccchhhccCCCCCCEEEccCCcccccCCccc-cCCC-CCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451          358 LGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL-GNLT-LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN  435 (566)
Q Consensus       358 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      +....|.+. -++....++.+|++|++..|++. .+|..+ .... .|+.++.+.+++.......=.....|+.|.+.+|
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence            999999887 45667777899999999999988 555533 3333 3778888888876332222234567999999999


Q ss_pred             cccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCC
Q 040451          436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP  515 (566)
Q Consensus       436 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  515 (566)
                      .+++..-..+-....+ ++|++++|++.......+.+++.|++|++++|+++ .+|+.+..+..|++|....|.+. .+|
T Consensus       370 ~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP  446 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP  446 (1081)
T ss_pred             cccccchhhhccccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech
Confidence            9998777766666666 99999999998665567899999999999999999 78899999999999999999999 678


Q ss_pred             cCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451          516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                       -+..+++|+.+|++.|.++..........+.|++||++||.
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence             77889999999999999986543332333899999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-34  Score=287.99  Aligned_cols=463  Identities=26%  Similarity=0.333  Sum_probs=379.1

Q ss_pred             EEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcC
Q 040451           63 INLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL  142 (566)
Q Consensus        63 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  142 (566)
                      ++++.+++. .+|..+.....+..|+++.|.+-....+.+.++.+|+.|++++|++. ..|..+..+.+|+.|+++.|.|
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            455555555 67766655556899999999776444566778888999999999987 7888999999999999999999


Q ss_pred             CCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcccc
Q 040451          143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNG  222 (566)
Q Consensus       143 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  222 (566)
                      . ..|.+..++.+|+++.|.+|.+. .+|..+..+++|+.|+++.|.+...+..+..+..++.+..++|.....++.   
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---  155 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ---  155 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence            9 78899999999999999999987 889999999999999999999999988888888999999988833322222   


Q ss_pred             CCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcC
Q 040451          223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTN  302 (566)
Q Consensus       223 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  302 (566)
                         ..++.+++..+.+....+..+..+..  .|++.+|.+.   ...+..+++|+.+....|++.....          .
T Consensus       156 ---~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----------~  217 (1081)
T KOG0618|consen  156 ---TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----------S  217 (1081)
T ss_pred             ---ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------c
Confidence               12778888888777666666666555  6999999875   3346788889999998888765433          4


Q ss_pred             CCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEE
Q 040451          303 CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQML  382 (566)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  382 (566)
                      -++++.|..+.|.++...+   ...+.+++.++++.+++.+ +|+++..+.+|+.+....|.++ ..+..+....+|+.|
T Consensus       218 g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             CcchheeeeccCcceeecc---ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence            4799999999998873322   3345689999999999985 5699999999999999999996 667777788999999


Q ss_pred             EccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCC-CcEEEccCCcccccCchhhhccCCcCcEEEccCCc
Q 040451          383 FLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQN-LILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL  461 (566)
Q Consensus       383 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~  461 (566)
                      .+..|.+. -+|.....++.|++|++..|++....+..+..... |..++.+.+++. ..|..-......++.|.+.+|.
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCc
Confidence            99999998 67778888999999999999998333333344433 788888888876 5554444444556889999999


Q ss_pred             ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCcc
Q 040451          462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY  541 (566)
Q Consensus       462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  541 (566)
                      +++.....+.++++||.|++++|++.......+.+++.|++|+||||+++ .+|..+..++.|++|...+|.+. ..| .
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e  447 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E  447 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence            99887778999999999999999998555567899999999999999999 58899999999999999999999 667 6


Q ss_pred             CcCCCCCCeeeCCCCcCcc
Q 040451          542 LENLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       542 l~~~~~L~~L~l~~~~l~~  560 (566)
                      +.++++|+.+|+|.|.++.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hhhcCcceEEecccchhhh
Confidence            7899999999999999874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-33  Score=269.42  Aligned_cols=368  Identities=23%  Similarity=0.342  Sum_probs=229.0

Q ss_pred             CCCCCCEEeCCCccCC-CCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451           80 NLFRLQNLTLTNNYFS-GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  158 (566)
                      -++..+-+|+++|.++ +..|..+..++.++.|.|...++. .+|+.++.+.+|++|.+++|+++ .+-..+..++.|+.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            3455666777888776 446666667777777777666665 56666777777777777777666 45555666666777


Q ss_pred             EEeeCCcccc-cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCc
Q 040451          159 IDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN  237 (566)
Q Consensus       159 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  237 (566)
                      +.++.|++.. -+|..+-++..|+.|+++.|++...+..+..-+++-.|++++|++. .||...                
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l----------------  145 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSL----------------  145 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchH----------------
Confidence            7766666542 3445555666666666666666655554444444555555555544 444433                


Q ss_pred             cccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451          238 LTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       238 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                              +.++..|-.|++++|++. ..|.....+..|++|.+++|.+.....      ..+..+.+|++|.+++.+-+
T Consensus       146 --------finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL------rQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  146 --------FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL------RQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             --------HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH------hcCccchhhhhhhcccccch
Confidence                    334444445555555554 333334455555555555555432211      23344455666666655422


Q ss_pred             cccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccc
Q 040451          318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL  397 (566)
Q Consensus       318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  397 (566)
                      -                        .-+|..+..+.+|..++++.|.+. ..|..+..+++|+.|++++|+++ .+....
T Consensus       211 l------------------------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  211 L------------------------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             h------------------------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccH
Confidence            0                        134455666677777777777766 66777777777777777777776 444445


Q ss_pred             cCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCccccc-CchhhhccCCcCcEEEccCCcceecCCccccCCCCC
Q 040451          398 GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT-VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNL  476 (566)
Q Consensus       398 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L  476 (566)
                      ....+|++|+++.|+++ .+|.++..++.|+.|...+|+++.+ +|..++++..+ +++..++|.+. ..|+.++.|..|
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-evf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-EVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-HHHHhhccccc-cCchhhhhhHHH
Confidence            55667777777777777 6777777777777777777776532 55555555555 66666666665 567777777777


Q ss_pred             CEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       477 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      +.|.++.|.+. .+|+++.-++.|+.||+++|+..
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            77777777776 67777777777777777777655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.8e-33  Score=267.48  Aligned_cols=365  Identities=23%  Similarity=0.348  Sum_probs=221.8

Q ss_pred             CCCCEEecccCcCC-CCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEc
Q 040451          130 LMLQILNIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFI  208 (566)
Q Consensus       130 ~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l  208 (566)
                      +-.+-.|+++|.++ +..|.....|++++.|.+...++. .+|+.++.+.+|++|.++.|++..+...+..++.|+.+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            33444555555555 345666666666666666666554 5566666666666666666666655555666666666666


Q ss_pred             ccCcCc-ccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCC
Q 040451          209 HTNRFH-GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLG  287 (566)
Q Consensus       209 ~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (566)
                      +.|++. .-+|..++ ++..|+.|++++|.+. ..|..+...+++-.|++++|.+..++...|.++..|-.|++++|.+.
T Consensus        86 R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            666653 24677777 7788888888888877 66777777778888888888887555555667777777777777765


Q ss_pred             CCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc-
Q 040451          288 TGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA-  366 (566)
Q Consensus       288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-  366 (566)
                      ..++       .+..+.+|+.|.+++|.+.-.   .                      -..+..+.+|+.|.+++.+-+ 
T Consensus       164 ~LPP-------Q~RRL~~LqtL~Ls~NPL~hf---Q----------------------LrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  164 MLPP-------QIRRLSMLQTLKLSNNPLNHF---Q----------------------LRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             hcCH-------HHHHHhhhhhhhcCCChhhHH---H----------------------HhcCccchhhhhhhcccccchh
Confidence            5544       344555666666666653200   0                      012334556666666665443 


Q ss_pred             ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhh
Q 040451          367 GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLL  446 (566)
Q Consensus       367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  446 (566)
                      ..+|..+..+.+|..+|++.|.+. ..|+.+.++++|+.|++++|+|+ ++........+|++|+++.|.++        
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt--------  281 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT--------  281 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc--------
Confidence            235666666667777777777666 66666666777777777777666 33334444455666666666655        


Q ss_pred             ccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc-CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCC
Q 040451          447 HIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT  525 (566)
Q Consensus       447 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  525 (566)
                                        .+|.++++++.|+.|++.+|+++-. +|.+++.+..|+++...+|.+. ..|+++..|+.|+
T Consensus       282 ------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  282 ------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             ------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence                              4455555555555555555555422 4555555555555555555554 4555555556666


Q ss_pred             EEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       526 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .|.|++|.+. ++|+.+.-++-|+.||+..|+=.
T Consensus       343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            6666665555 45555555555556665555433

>PLN03210 Resistant to P

Probab=99.91  E-value=4.1e-23  Score=230.25  Aligned_cols=381  Identities=15%  Similarity=0.163  Sum_probs=238.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCc--ccCcccCcCCCCCcEEEcCCCCC------ccccCcc
Q 040451            6 QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVG--GVLSPFVGNLSFPRSINLPNKSF------RGEIPHE   77 (566)
Q Consensus         6 ~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~   77 (566)
                      .+|+++..-|++.+.+......+  +. .+|+.+.+....+.  ...+.+|.+|++|+.|.+..+..      ...+|..
T Consensus       507 ~~~~~r~~l~~~~di~~vl~~~~--g~-~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~  583 (1153)
T PLN03210        507 NEPGEREFLVDAKDICDVLEDNT--GT-KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG  583 (1153)
T ss_pred             CCCCcceeEeCHHHHHHHHHhCc--cc-ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc
Confidence            47888888887654332222211  11 45666655433332  12345688899999998865532      2346666


Q ss_pred             ccCCC-CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC
Q 040451           78 VSNLF-RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL  156 (566)
Q Consensus        78 ~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L  156 (566)
                      +..++ +|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|++|+++++.....+| .+..+++|
T Consensus       584 ~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L  659 (1153)
T PLN03210        584 FDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL  659 (1153)
T ss_pred             hhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence            66654 6899999988876 566666 5688999999998887 677788889999999998875443555 47788899


Q ss_pred             CEEEeeCCcccccCcccccccCccceeeccccc-cccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccC
Q 040451          157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQ-FSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG  235 (566)
Q Consensus       157 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  235 (566)
                      ++|++++|.....+|..+..+++|+.|++++|. +...+.. .++++|+.|++++|.....+|.    ...+|+.|++++
T Consensus       660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~  734 (1153)
T PLN03210        660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDE  734 (1153)
T ss_pred             cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCC
Confidence            999998887656788888888999999998875 3333332 2678888888888866545553    245788888888


Q ss_pred             CccccccccccccCCCCceEecccccccc-------cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCE
Q 040451          236 NNLTGSLQDSLSNATNLQGLEINGNLFSG-------KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEV  308 (566)
Q Consensus       236 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  308 (566)
                      +.+. ..|..+ .+++|+.|.+.++....       ..+......++|+.|++++|......+      ..+..+++|+.
T Consensus       735 n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~  806 (1153)
T PLN03210        735 TAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEH  806 (1153)
T ss_pred             Cccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCE
Confidence            8776 344433 46677777776543211       111112234567777777765433333      34566677777


Q ss_pred             EEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCc
Q 040451          309 LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF  388 (566)
Q Consensus       309 L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  388 (566)
                      |++++|...+..|...  ..++|+.|++++|.....+|..   ..+|+.|+++++.++ .+|..+..+++|++|++++|.
T Consensus       807 L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        807 LEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             EECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence            7777665333334332  1245666666665544333332   245666666666655 345555666666666666654


Q ss_pred             ccccCCccccCCCCCCeEecccCc
Q 040451          389 LRGTIPSSLGNLTLLTQLILEVNN  412 (566)
Q Consensus       389 ~~~~~~~~~~~l~~L~~L~l~~~~  412 (566)
                      -...+|..+..+++|+.+++++|.
T Consensus       881 ~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        881 NLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcCccCcccccccCCCeeecCCCc
Confidence            333455555556666666666553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=2.5e-22  Score=223.96  Aligned_cols=128  Identities=25%  Similarity=0.211  Sum_probs=81.7

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEE
Q 040451          376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLL  455 (566)
Q Consensus       376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L  455 (566)
                      +++|++|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..    ...++.|
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L  851 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDL  851 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEe
Confidence            4567777777776555667777777777777777765433555444 5677777777776544333322    2334667


Q ss_pred             EccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451          456 DLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS  509 (566)
Q Consensus       456 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  509 (566)
                      ++++|.+. .+|..+..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus       852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            77777666 456666677777777777755444566666667777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.7e-24  Score=193.48  Aligned_cols=400  Identities=20%  Similarity=0.205  Sum_probs=207.5

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeC-CcccccCcccccccCccceeec
Q 040451          107 NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVRNLISFNV  185 (566)
Q Consensus       107 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l  185 (566)
                      .-..++|..|.|+...+.+|+.+++|+.|||++|+|+.+.|.+|..+++|.+|-+.+ |+|+......|+++..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            445667777777766666777777777777777777777777777777776666655 6776554556777777777777


Q ss_pred             cccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc
Q 040451          186 ARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG  264 (566)
Q Consensus       186 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  264 (566)
                      .-|++.... ..+..++++..|.+.+|.+. .++...+..+..++.+.+..|.+..     ..+++.+....       .
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a  214 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------A  214 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-------h
Confidence            777766655 56666777777777777665 5555444455566666555554220     11111111100       0


Q ss_pred             cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc
Q 040451          265 KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT  344 (566)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  344 (566)
                      ..+..+++........+.+..+.......+     .....++..--.+.+......|.                      
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-----~c~~esl~s~~~~~d~~d~~cP~----------------------  267 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKF-----LCSLESLPSRLSSEDFPDSICPA----------------------  267 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhh-----hhhHHhHHHhhccccCcCCcChH----------------------
Confidence            111111111111111222222211111000     00000000000011111111111                      


Q ss_pred             cchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCC
Q 040451          345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC  424 (566)
Q Consensus       345 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~  424 (566)
                        ..|..+++|++|++++|+++.+...+|.+...+++|.+.+|++......+|..+..|+.|++.+|+|+...|.+|...
T Consensus       268 --~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  268 --KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             --HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence              234555555555555555555555555555555555555555543334445555555555555555555555555555


Q ss_pred             CCCcEEEccCCcccc-----------------cCchhhhccCCcCcEEEccCCcce---ecCCcc---------ccCCCC
Q 040451          425 QNLILLTTRKNKLSG-----------------TVPRQLLHIITLPVLLDLSDNLLN---GHFPAE---------VGNLKN  475 (566)
Q Consensus       425 ~~L~~L~l~~~~l~~-----------------~~~~~~~~~~~~l~~L~l~~~~~~---~~~~~~---------l~~~~~  475 (566)
                      .+|.+|.+-+|.+.-                 ..|+  .+.+..++.+++++..+.   ...++.         -..++-
T Consensus       346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c  423 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC  423 (498)
T ss_pred             ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence            555555555443210                 0000  111112223333333221   111111         123444


Q ss_pred             CCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCC
Q 040451          476 LVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  555 (566)
Q Consensus       476 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  555 (566)
                      +.+.-=..|+....+|..+.  ..-.+|++.+|.++. +|..  .+.+| .+|+++|+++...-..|.++.+|.+|=|++
T Consensus       424 ~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy  497 (498)
T KOG4237|consen  424 LDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY  497 (498)
T ss_pred             hhhhHhhcccchhhcCCCCC--chhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence            54443333444446666554  567888999999884 5544  56778 899999998866666788888898888887


Q ss_pred             C
Q 040451          556 N  556 (566)
Q Consensus       556 ~  556 (566)
                      |
T Consensus       498 n  498 (498)
T KOG4237|consen  498 N  498 (498)
T ss_pred             C
Confidence            5

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=4.6e-24  Score=194.05  Aligned_cols=253  Identities=22%  Similarity=0.247  Sum_probs=188.6

Q ss_pred             CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccC-CcccccCCccccCCCCCCEEec
Q 040451           59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN-NKLEAEIPVEIGNLLMLQILNI  137 (566)
Q Consensus        59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l  137 (566)
                      .-..++|..|+|+..-+++|+.+++||+|||++|.|+.+.|.+|..++.|..|-+.+ |+|++.....|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567888999999844446688999999999999999888888999999888877776 8888555557889999999999


Q ss_pred             ccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hh-----------hhCCCC--
Q 040451          138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PL-----------IYNISS--  202 (566)
Q Consensus       138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~-----------l~~~~~--  202 (566)
                      ..+++......++..+++|..|.+..|.+..+-...+..+..++.+.++.|.+....  ++           +.+...  
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            999888778888899999999999998887443346788888888888776632111  11           111111  


Q ss_pred             --------------------CcEE---EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccc
Q 040451          203 --------------------LQYI---FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEING  259 (566)
Q Consensus       203 --------------------L~~L---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  259 (566)
                                          ++.+   ..+.+......|..-+..+++|++|++++|+++.+-+.+|.+..++++|.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                                1111   11122222344444456788899999999988888888888888899999988


Q ss_pred             ccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451          260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      |++.......|.++..|+.|++++|+++...+      ..|....+|..|++-.|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCccc
Confidence            88877777778888888889999998888777      56677778888888777653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=5.5e-19  Score=183.07  Aligned_cols=262  Identities=26%  Similarity=0.298  Sum_probs=136.0

Q ss_pred             CccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCC
Q 040451          227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKL  306 (566)
Q Consensus       227 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (566)
                      .-..|+++.+.++ ..|..+.  ++|+.|++.+|.++. .|.   .+++|++|++++|.++..+.          ..++|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL  264 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----------LPPGL  264 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----------ccccc
Confidence            3456777777776 3454443  367777777777663 332   24667777777777664432          13566


Q ss_pred             CEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccC
Q 040451          307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      +.|++.+|.+... |    ..+..++.|++.+|+++. +|.   .+++|+.|++++|.+++. +.   ...+|+.|++++
T Consensus       265 ~~L~Ls~N~L~~L-p----~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~  331 (788)
T PRK15387        265 LELSIFSNPLTHL-P----ALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYN  331 (788)
T ss_pred             ceeeccCCchhhh-h----hchhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---Cccccccccccc
Confidence            7777777765522 1    123456666666666553 232   234566666666665532 21   123455666666


Q ss_pred             CcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecC
Q 040451          387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHF  466 (566)
Q Consensus       387 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  466 (566)
                      |.++ .+|..   ..+|+.|++++|+++ .+|..   ..+|+.|++++|.+. .+|..    +..++.|++++|.+.. +
T Consensus       332 N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-L  397 (788)
T PRK15387        332 NQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-L  397 (788)
T ss_pred             Cccc-ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-C
Confidence            6655 33321   135666666666665 23321   234555566666554 33321    1223555555555552 2


Q ss_pred             CccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCc
Q 040451          467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ  540 (566)
Q Consensus       467 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  540 (566)
                      |..   .++|+.|++++|.++ .+|..   +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+.
T Consensus       398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            221   234555555555555 33332   234555555555555 3455555555555555555555544433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=2.5e-18  Score=178.22  Aligned_cols=264  Identities=22%  Similarity=0.291  Sum_probs=144.9

Q ss_pred             cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEcc
Q 040451           35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS  114 (566)
Q Consensus        35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  114 (566)
                      +-..|+++.+.++ .+|..+.  ++|+.|++.+|+++ .+|.   ..++|++|++++|.++ .+|.   ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC---cccccceeecc
Confidence            3456788888777 4666664  47888888888877 5664   2467788888888776 3443   23577777777


Q ss_pred             CCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch
Q 040451          115 NNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI  194 (566)
Q Consensus       115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (566)
                      +|.+. .+|..+   ++|+.|++++|+++ .+|..   .++|++|++++|.+.. +|...   ..|+.|++++|.+..++
T Consensus       271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccccc
Confidence            77766 344322   45677777777777 45542   3567777777777663 33321   34555666666655433


Q ss_pred             hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCC
Q 040451          195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ  274 (566)
Q Consensus       195 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  274 (566)
                      ..   ..+|++|++++|.+. .+|..    .++|+.|++++|.+.. .|..                           ..
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---------------------------~~  382 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---------------------------PS  382 (788)
T ss_pred             cc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---------------------------cc
Confidence            21   134555555555554 33321    2344455555554442 2211                           12


Q ss_pred             CCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCC
Q 040451          275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVN  354 (566)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~  354 (566)
                      +|+.|++++|.+...+.          ..++|+.|++++|.+... |.    .+..++.|++++|+++ .+|..+..+++
T Consensus       383 ~L~~LdLs~N~Lt~LP~----------l~s~L~~LdLS~N~LssI-P~----l~~~L~~L~Ls~NqLt-~LP~sl~~L~~  446 (788)
T PRK15387        383 GLKELIVSGNRLTSLPV----------LPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSS  446 (788)
T ss_pred             ccceEEecCCcccCCCC----------cccCCCEEEccCCcCCCC-Cc----chhhhhhhhhccCccc-ccChHHhhccC
Confidence            34445555544433221          113455555555554421 21    1123444555555554 45555666666


Q ss_pred             CCEEecCCccccccchhhc
Q 040451          355 LNALGVESNQLAGTIPLAI  373 (566)
Q Consensus       355 L~~L~l~~~~~~~~~~~~~  373 (566)
                      |+.+++++|++++..+..+
T Consensus       447 L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        447 ETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCeEECCCCCCCchHHHHH
Confidence            6677777666665544443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=5.9e-19  Score=171.68  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             cEEEccCCcceec----CCccccCCCCCCEEEccCCcccccCCcCC-----cCCCCCcEEeCCCCcccc----cCCcCCC
Q 040451          453 VLLDLSDNLLNGH----FPAEVGNLKNLVSLDISSNMFSGEIPTTL-----GGCTSLEYLGMQDNSFTR----SIPSTLS  519 (566)
Q Consensus       453 ~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~l~  519 (566)
                      +.|++++|.+.+.    ....+..+++|+.|++++|.+.+.....+     ...+.|++|++++|.+++    .+...+.
T Consensus       196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~  275 (319)
T cd00116         196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA  275 (319)
T ss_pred             CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence            4445554444322    12345667888888888888774222111     124788999999988862    2334556


Q ss_pred             CCCCCCEEeCCCCccccc----CCccCcCC-CCCCeeeCCCCcC
Q 040451          520 SLKSITELDLSRNNLSGH----IPQYLENL-SFLSFLNLSYNHF  558 (566)
Q Consensus       520 ~l~~L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~~~l  558 (566)
                      .+++|+.+++++|.++..    ....+... +.|++|++.+|++
T Consensus       276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            668899999999988844    33444444 6788999888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4.7e-19  Score=172.38  Aligned_cols=275  Identities=21%  Similarity=0.264  Sum_probs=135.2

Q ss_pred             EEcCCCCCc-ccCcccCcCCCCCcEEEcCCCCCccc----cCccccCCCCCCEEeCCCccCCC------CCCcccccCCC
Q 040451           39 LDLRQQSVG-GVLSPFVGNLSFPRSINLPNKSFRGE----IPHEVSNLFRLQNLTLTNNYFSG------KILTDLSHCSN  107 (566)
Q Consensus        39 l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~  107 (566)
                      |+|..+.+. ......+..+++|++|+++++.+++.    ++..+...+++++++++++.+..      ..+..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            566666665 33445556677788888887777432    45555666777777777776541      11233445556


Q ss_pred             CCEEEccCCcccccCCccccCCCC---CCEEecccCcCCC----CCchhhcCC-CCCCEEEeeCCcccc----cCccccc
Q 040451          108 VMKFEASNNKLEAEIPVEIGNLLM---LQILNIAENHLKG----QLPASIGNL-SALQEIDVRGNRLGG----RIPSTIS  175 (566)
Q Consensus       108 L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~~~i~~----~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~  175 (566)
                      |++|++++|.+....+..+..+..   |++|++++|++..    .+...+..+ ++|++|++++|.+++    .++..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            666666666554333333333333   6666666555542    112223344 555555555555542    1122233


Q ss_pred             ccCccceeeccccccccch-----hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccc----cccc
Q 040451          176 HVRNLISFNVARNQFSGMI-----PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSL----QDSL  246 (566)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l  246 (566)
                      .+++|++|++++|.+.+..     ..+...                         ++|++|++++|.+++..    ...+
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-------------------------~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKAN-------------------------CNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhC-------------------------CCCCEEeccCCccChHHHHHHHHHh
Confidence            3444555555555444211     122223                         34555555544443221    1223


Q ss_pred             ccCCCCceEeccccccccccccccc-----CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc
Q 040451          247 SNATNLQGLEINGNLFSGKVSINFS-----RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       247 ~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      ..+++|++|++++|.+.+.....+.     ..+.|+.|++++|.+.....  ..+...+..+++|+++++++|.+.....
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--KDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--HHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            3445566666655555432221111     13566666666665543221  1222344455667777777776664432


Q ss_pred             hhHh----hccccccEEEccccC
Q 040451          322 FSLA----NLSITMTEIANGSNQ  340 (566)
Q Consensus       322 ~~~~----~~~~~l~~l~l~~~~  340 (566)
                      ..+.    .....++.+++.+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCC
Confidence            2222    222355666655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=4.8e-17  Score=169.93  Aligned_cols=260  Identities=19%  Similarity=0.312  Sum_probs=182.2

Q ss_pred             CcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCccc
Q 040451           23 QWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDL  102 (566)
Q Consensus        23 ~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  102 (566)
                      .+....|..  .+...|+++++.++. +|..+.  ++|+.|+|++|.++ .+|..+.  ++|++|++++|.++ .+|..+
T Consensus       169 ~~r~~~Cl~--~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l  239 (754)
T PRK15370        169 VQRMRDCLK--NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL  239 (754)
T ss_pred             HHHHHhhcc--cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh
Confidence            334456754  567889999988874 565554  57999999999988 7776554  58999999999887 456544


Q ss_pred             ccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccce
Q 040451          103 SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS  182 (566)
Q Consensus       103 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  182 (566)
                      .  .+|+.|++++|.+. .+|..+.  .+|++|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.
T Consensus       240 ~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~  308 (754)
T PRK15370        240 P--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITH  308 (754)
T ss_pred             h--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHH
Confidence            3  47999999999987 6776665  47999999999988 5777654  48999999999887 4555443  46888


Q ss_pred             eeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451          183 FNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF  262 (566)
Q Consensus       183 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  262 (566)
                      |++++|.+...+..+  .++|+.|++++|.++ .+|..+   .++|+.|++++|.+. ..|..+  .+.|+.|++++|.+
T Consensus       309 L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L  379 (754)
T PRK15370        309 LNVQSNSLTALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL  379 (754)
T ss_pred             HHhcCCccccCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence            888888887665333  257888888888876 466443   367888888888777 344433  35788888888877


Q ss_pred             cccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451          263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      .. .|..+.  ..|+.|++++|.+...+. .  +......++.+..+++.+|.+.
T Consensus       380 t~-LP~~l~--~sL~~LdLs~N~L~~LP~-s--l~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        380 TN-LPENLP--AALQIMQASRNNLVRLPE-S--LPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CC-CCHhHH--HHHHHHhhccCCcccCch-h--HHHHhhcCCCccEEEeeCCCcc
Confidence            63 333332  357777777777764322 1  1123344567777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=5.9e-17  Score=169.27  Aligned_cols=183  Identities=25%  Similarity=0.433  Sum_probs=120.5

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      .++.|++++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence            4555555555554 3444443  46888888888887 3454442  57889999988887 4554433  478888888


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|.++ .+|..+  .++|+.|++++|.++ .+|..+.   +.++.|++++|++. .+|..+.  ++|+.|++++|.++ .
T Consensus       313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~  381 (754)
T PRK15370        313 SNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-N  381 (754)
T ss_pred             CCccc-cCCccc--cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-C
Confidence            88887 344333  357888888888877 4554432   34577888888776 3454443  57788888888777 5


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccCCcCC----CCCCCCCEEeCCCCccc
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTL----SSLKSITELDLSRNNLS  535 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~n~~~  535 (566)
                      +|..+.  ..|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            555444  46777888888777 345433    33467778888888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=9.3e-19  Score=141.36  Aligned_cols=152  Identities=21%  Similarity=0.382  Sum_probs=61.3

Q ss_pred             CCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040451           56 NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQIL  135 (566)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L  135 (566)
                      ++.+++.|.|+.|+++ .+|..++.+.+|++|++++|+++ .+|..++.+++|+.|++.-|++. .+|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3344444444444444 34444444444444444444444 33444444444444444444433 334444444444444


Q ss_pred             ecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccC
Q 040451          136 NIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTN  211 (566)
Q Consensus       136 ~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  211 (566)
                      |+..|++.. .+|..|..+..|+.|.++.|.+. .+|..++++++|+.|.+++|.+...+..++.+..|++|.+.+|
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            444433321 23333333334444444444333 3333344444444444443333333333333333333333333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-18  Score=140.55  Aligned_cols=162  Identities=23%  Similarity=0.411  Sum_probs=150.1

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .+|++|.||.|.++ ..|+.++++.+|++|++++|++. ++|..++.+++|+.|++.-|++. .+|..|+.++-|++||+
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            68999999999997 57888999999999999999998 99999999999999999999987 78999999999999999


Q ss_pred             cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451          114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG  192 (566)
Q Consensus       114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      ++|.+.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.++.|.+. .+|..++.+..|+.|.+.+|++..
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence            9998864 68889999999999999999999 89999999999999999999987 789999999999999999999998


Q ss_pred             chhhhhCC
Q 040451          193 MIPLIYNI  200 (566)
Q Consensus       193 ~~~~l~~~  200 (566)
                      .++.++++
T Consensus       188 lppel~~l  195 (264)
T KOG0617|consen  188 LPPELANL  195 (264)
T ss_pred             cChhhhhh
Confidence            88666653

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=1.6e-12  Score=135.81  Aligned_cols=137  Identities=29%  Similarity=0.504  Sum_probs=98.8

Q ss_pred             ccCCCCCCCCCCCCCCCCCCC----CcccCccCCCC----CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccc
Q 040451            2 KSQLQDPLGVTSSWNNSINLC----QWTGVTCGHRR----QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGE   73 (566)
Q Consensus         2 ~~~~~~~~~~~~~w~~~~~~c----~w~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~   73 (566)
                      |+++.+|..  .+|+. +.|+    .|.|+.|....    ..|+.|+|+++.+.+.+|..++++++|++|+|++|.+.+.
T Consensus       381 k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~  457 (623)
T PLN03150        381 KSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN  457 (623)
T ss_pred             HHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc
Confidence            344444432  58963 4443    79999995321    2488888888888888888888888888888888888888


Q ss_pred             cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCC-CCCCEEecccCc
Q 040451           74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNL-LMLQILNIAENH  141 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~  141 (566)
                      +|..++.+++|+.|+|++|.+++..|..+..+++|++|+|++|.+.+.+|..++.. .++..+++.+|.
T Consensus       458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            88878888888888888888877777777777777777777777776777666543 345556655554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=2.4e-12  Score=114.07  Aligned_cols=208  Identities=22%  Similarity=0.180  Sum_probs=141.9

Q ss_pred             ccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc-ceecCCcccc
Q 040451          344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN-LQGKIPPSIG  422 (566)
Q Consensus       344 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~  422 (566)
                      .+|..+..+.+|+.+.++.|.-..+ ......-|.|.++.+....+.+ .+ .+--+..+....-+.-. .+|.......
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             ccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecc
Confidence            4555566778888888888754322 2222344778888887665542 11 11111222221111111 1122222333


Q ss_pred             CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcE
Q 040451          423 NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY  502 (566)
Q Consensus       423 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  502 (566)
                      ..+.|+.+++++|.++ .+...+--. +.++.|++++|.+...  ..+..+++|+.||+++|.++ .+..+=..+-++++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            4567889999999886 444444333 4448999999999754  34888999999999999998 55565567788999


Q ss_pred             EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC-CccCcCCCCCCeeeCCCCcCccc
Q 040451          503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~  561 (566)
                      |.+++|.+..  ..+++.+-+|..||+++|+|.... ...++++|.|+.+.|.+|++.+.
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9999999874  358999999999999999997543 36688999999999999999864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=2.8e-12  Score=116.28  Aligned_cols=142  Identities=19%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhcc
Q 040451          273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL  352 (566)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l  352 (566)
                      .+.|+.+..++|.+...+...+.  ..++.++.|+.+.+..|.+......                     .+...+..+
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A--~~~~~~~~leevr~~qN~I~~eG~~---------------------al~eal~~~  212 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALA--EAFQSHPTLEEVRLSQNGIRPEGVT---------------------ALAEALEHC  212 (382)
T ss_pred             CcceEEEEeeccccccccHHHHH--HHHHhccccceEEEecccccCchhH---------------------HHHHHHHhC
Confidence            34555555555555544443322  4455556666666665554422211                     122344555


Q ss_pred             CCCCEEecCCcccccc----chhhccCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEecccCcceec----CCc
Q 040451          353 VNLNALGVESNQLAGT----IPLAIGELKSLQMLFLNENFLRGTIPSSL-----GNLTLLTQLILEVNNLQGK----IPP  419 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~----~~~  419 (566)
                      ++|+.|++++|.++..    +...+..+++|++|++++|.+.......+     ...|+|+.+.+.+|.++..    +..
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            5666666666555433    22234445556666666665543332222     2245666666666655421    222


Q ss_pred             cccCCCCCcEEEccCCcc
Q 040451          420 SIGNCQNLILLTTRKNKL  437 (566)
Q Consensus       420 ~~~~~~~L~~L~l~~~~l  437 (566)
                      .....+.|..|++++|.+
T Consensus       293 ~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  293 CMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcchhhHHhcCCcccc
Confidence            233456666666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=5.9e-12  Score=114.25  Aligned_cols=244  Identities=19%  Similarity=0.230  Sum_probs=155.0

Q ss_pred             hhhcCCCCCCEEEeeCCccccc----CcccccccCccceeeccccccc----cch-------hhhhCCCCCcEEEcccCc
Q 040451          148 ASIGNLSALQEIDVRGNRLGGR----IPSTISHVRNLISFNVARNQFS----GMI-------PLIYNISSLQYIFIHTNR  212 (566)
Q Consensus       148 ~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~-------~~l~~~~~L~~L~l~~~~  212 (566)
                      ..+..+..++.+++++|.+...    +...+.+.++|+..++++-.-.    ..+       ..+..+++|+++++++|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3445677888899998877532    3334556677777777653211    111       345567788888888887


Q ss_pred             CcccCCcc---ccCCCCCccEEEccCCccccccc-------------cccccCCCCceEeccccccccccc----ccccC
Q 040451          213 FHGSLPLD---NGVNLPNLRYFSISGNNLTGSLQ-------------DSLSNATNLQGLEINGNLFSGKVS----INFSR  272 (566)
Q Consensus       213 ~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~  272 (566)
                      +....+..   +..++..|++|++.+|++....-             ...+.-+.|+++..++|++.....    ..|..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            75433322   22357788888888887653221             123345678888888887754333    23566


Q ss_pred             CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhcc
Q 040451          273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL  352 (566)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l  352 (566)
                      .+.|+.+.++.|.+.....  ......+..|++|++|+++.|.++......++.                     .+..+
T Consensus       184 ~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~Lak---------------------aL~s~  240 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAK---------------------ALSSW  240 (382)
T ss_pred             ccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHH---------------------Hhccc
Confidence            6788888888887765444  233356778888888888888776444333333                     35566


Q ss_pred             CCCCEEecCCccccccchhhc-----cCCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcce
Q 040451          353 VNLNALGVESNQLAGTIPLAI-----GELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~  414 (566)
                      ++|+.+++++|-+......++     ...|+|+.+.+.+|.++..    +...+...+.|+.|++++|.+.
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            778888888887765433322     2467888888888877632    2333445678888888888773

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-11  Score=132.12  Aligned_cols=152  Identities=20%  Similarity=0.282  Sum_probs=108.2

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCcc--CCCCCCcccccCCCCCEEEccCCcccccCCccccCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY--FSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLM  131 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  131 (566)
                      ..+....+...+.++.+. .++... .+++|++|-+.++.  +.......|..++.|++|||++|.-.+.+|..++++-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344566777777777765 444433 34478888887775  44344555788888999999887766688888999999


Q ss_pred             CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch---hhhhCCCCCcEEEc
Q 040451          132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFI  208 (566)
Q Consensus       132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l  208 (566)
                      ||+|+++++.+. .+|..+.+++.|.+|++..+.-....+.....+.+|++|.+.........   ..+.++++|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999888 78999999999999998877655455566666888888888766532222   34445555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=3.4e-11  Score=102.62  Aligned_cols=125  Identities=22%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             CCCCCCEEeCCCccCCCCCCcccc-cCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhh-cCCCCCC
Q 040451           80 NLFRLQNLTLTNNYFSGKILTDLS-HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASI-GNLSALQ  157 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~  157 (566)
                      +..++++|+|++|.++.  .+.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|+|+ .+...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            34456666666666652  12343 45666666666666653 2 24666777777777777777 344444 3567777


Q ss_pred             EEEeeCCccccc-CcccccccCccceeeccccccccch----hhhhCCCCCcEEEcc
Q 040451          158 EIDVRGNRLGGR-IPSTISHVRNLISFNVARNQFSGMI----PLIYNISSLQYIFIH  209 (566)
Q Consensus       158 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~  209 (566)
                      +|++++|++.+. ....++.+++|+.|++.+|.+....    ..+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777777776531 1234566777777777777776544    345667777777643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.4e-12  Score=117.72  Aligned_cols=206  Identities=24%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             ccccEEEccccCccCccc-hhhhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCcccccCC-ccccCCCCCC
Q 040451          329 ITMTEIANGSNQISGTIP-DVIANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENFLRGTIP-SSLGNLTLLT  404 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~  404 (566)
                      .+|+++.+.++.+..... .....+++++.|+++.|-+...  +......+|+|+.|+++.|.+.-... ..-..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            356666676666543221 3556788888888888755422  33455678888888888887652111 1112567888


Q ss_pred             eEecccCcceec-CCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCC-ccccCCCCCCEEEcc
Q 040451          405 QLILEVNNLQGK-IPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFP-AEVGNLKNLVSLDIS  482 (566)
Q Consensus       405 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~  482 (566)
                      .|.++.|.++.. +...+..+|+|..|.+.+|... .+-..-......++.||+++|++.+... ...+.++.|+.|+++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            888888887632 3344567788888888888522 1111222233334778888887764321 235677788888888


Q ss_pred             CCccccc-CCcC-----CcCCCCCcEEeCCCCccccc-CCcCCCCCCCCCEEeCCCCccc
Q 040451          483 SNMFSGE-IPTT-----LGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       483 ~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      .|++... .|++     ...+++|+.|++++|++.+- .-..+..+++|+.|.+..|++.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8877633 3333     35567888888888877531 1133556677777777777775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=6.2e-13  Score=127.82  Aligned_cols=168  Identities=32%  Similarity=0.461  Sum_probs=83.3

Q ss_pred             EEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCc
Q 040451          382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL  461 (566)
Q Consensus       382 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~  461 (566)
                      .+++.|++. ++|..+..+..|+.+.+..|-+. .+|.++..+..|+.++++.|.+. ..|..++.++  ++++.+++|+
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNk  154 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNK  154 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCc
Confidence            344444444 44444444444444444444443 34444444444444444444443 4444443332  2445555555


Q ss_pred             ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCcc
Q 040451          462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY  541 (566)
Q Consensus       462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  541 (566)
                      +. .+|+.++..+.|..||.+.|.+. .+|..++.+.+|+.|.+++|++.. +|+.+.. -.|.+||++.|+++ .+|.+
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchh
Confidence            54 34444555555555555555555 444455555555555555555553 3434432 34555555555555 55555


Q ss_pred             CcCCCCCCeeeCCCCcCc
Q 040451          542 LENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       542 l~~~~~L~~L~l~~~~l~  559 (566)
                      |.++..|++|.|.+|++.
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            555555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=6.6e-13  Score=127.64  Aligned_cols=173  Identities=27%  Similarity=0.384  Sum_probs=119.2

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      ...+..|++.|.+. .+|..+..|..|+.+.|..|.+. .+|..++++..|.+|+|+.|+++ .+|..++.|+ |++|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            45555666666665 45666666667777777777766 66666777777777777777766 5666666654 677777


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+..|+.|.++.|++. .+|..+.. -.|..||++.|++..+
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~i  226 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYL  226 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeec
Confidence            777776 56677776677777777777776 56777777777777777777765 55665653 3466677777777777


Q ss_pred             hhhhhCCCCCcEEEcccCcCc
Q 040451          194 IPLIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      +..+..++.|++|.+.+|++.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            767777777777777777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=5.3e-11  Score=119.11  Aligned_cols=198  Identities=29%  Similarity=0.492  Sum_probs=139.6

Q ss_pred             EEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCC-CCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451           62 SINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCS-NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN  140 (566)
Q Consensus        62 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  140 (566)
                      .+.+..+.+..... .+..++.++.|++.++.++ .++....... +|++|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666642332 3455577888888888877 5565666664 8888888888876 55556788888888888888


Q ss_pred             cCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcc
Q 040451          141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLD  220 (566)
Q Consensus       141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  220 (566)
                      +++ .++......+.|+.|++++|++. .+|..+.....|+.+.+++|.+......+..+..+..+.+.++.+. .++..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence            888 56666667788888888888877 5666555666688888888865555566677777777777777665 22323


Q ss_pred             ccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccc
Q 040451          221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI  268 (566)
Q Consensus       221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  268 (566)
                      .. .++.++.++++.|.+.....  +..+..++.|+++++.+....+.
T Consensus       251 ~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         251 IG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hc-cccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            33 66778888888888875543  77778888888888877655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=6.6e-11  Score=118.47  Aligned_cols=196  Identities=33%  Similarity=0.497  Sum_probs=100.9

Q ss_pred             EEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCC-CCCEEEccCCcccccCCccccCCCCCCeEecccC
Q 040451          333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK-SLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       333 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  411 (566)
                      .+....+.+... ...+.....++.+.+.++.++.. +....... +|++|++++|++. .++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            344555444221 12233445667777777766633 33343442 6777777777766 44455666777777777777


Q ss_pred             cceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC
Q 040451          412 NLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP  491 (566)
Q Consensus       412 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  491 (566)
                      ++. .++......+.|+.+++++|++. .+|..... ...++.+.+++|... ..+..+..+..+..+.+.+|++. ..+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            766 44444445666666666666665 44433211 121244555555322 12233444455555555555554 223


Q ss_pred             cCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC
Q 040451          492 TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI  538 (566)
Q Consensus       492 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  538 (566)
                      ..++.++.++.|++++|.++...+  +..+.+|+.|+++++.++...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             chhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            444445555555555555553222  445555555555555554333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.1e-11  Score=115.72  Aligned_cols=8  Identities=38%  Similarity=0.949  Sum_probs=5.5

Q ss_pred             CcccCccC
Q 040451           23 QWTGVTCG   30 (566)
Q Consensus        23 ~w~~~~~~   30 (566)
                      .|.|+.+.
T Consensus        30 ~w~GvEWD   37 (505)
T KOG3207|consen   30 KWYGVEWD   37 (505)
T ss_pred             cceeeEec
Confidence            67777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=1.2e-10  Score=124.31  Aligned_cols=151  Identities=16%  Similarity=0.213  Sum_probs=112.2

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCC--CccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEE
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKS--FRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKF  111 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  111 (566)
                      ..+++.++-++.+.....  -.+++.|++|-+.++.  +.....+.|..++.|++||+++|.-.+.+|..++.+.+||+|
T Consensus       523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            467888877777653222  2445579999888886  442333447889999999999987666899999999999999


Q ss_pred             EccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc--ccCcccccccCccceeeccc
Q 040451          112 EASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNVAR  187 (566)
Q Consensus       112 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~  187 (566)
                      +++++.+. .+|..+++++.|.+|++..+......+.....+++|++|.+......  ......+..+.+|+.+.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            99999998 89999999999999999988765455666777999999999876422  12223345555666555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=9.9e-11  Score=99.81  Aligned_cols=127  Identities=23%  Similarity=0.321  Sum_probs=50.2

Q ss_pred             CcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccc-cCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLM  131 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~  131 (566)
                      +.+..++++|+|++|.+. .+.. ++ .+.+|++|++++|.++.  .+.+..+++|++|++++|+++. +...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            345557889999999887 5543 44 57889999999998873  3457888999999999999884 44444 36889


Q ss_pred             CCEEecccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCcc----cccccCccceeecc
Q 040451          132 LQILNIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIPS----TISHVRNLISFNVA  186 (566)
Q Consensus       132 L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~  186 (566)
                      |++|++++|+|... .-..+..+++|++|++.+|.++.. +.    .+..+|+|+.||-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            99999999988632 234567889999999999988732 22    25678999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=1e-10  Score=103.88  Aligned_cols=131  Identities=17%  Similarity=0.243  Sum_probs=70.3

Q ss_pred             CCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEE
Q 040451          128 NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIF  207 (566)
Q Consensus       128 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  207 (566)
                      -.+.|+++|+++|.|+ .+.++..-.|.++.|++++|.+..+  ..++.+++|+.||+++|.+.....+-..+       
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-------  351 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKL-------  351 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhh-------
Confidence            3455777777777766 5666666667777777777776522  23666666666666666655444333333       


Q ss_pred             cccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccc-cccccCCCCCCEEECCCCcC
Q 040451          208 IHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKV-SINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  286 (566)
                                        -++++|.+.+|.+.+.  ..+..+-+|..||+++|++.... ...++++|.|+.+.+.+|.+
T Consensus       352 ------------------GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  352 ------------------GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ------------------cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence                              3444455554444422  22333444555555555543211 12244555555555555554


Q ss_pred             CC
Q 040451          287 GT  288 (566)
Q Consensus       287 ~~  288 (566)
                      ..
T Consensus       412 ~~  413 (490)
T KOG1259|consen  412 AG  413 (490)
T ss_pred             cc
Confidence            43

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=2.7e-12  Score=113.70  Aligned_cols=237  Identities=16%  Similarity=0.130  Sum_probs=148.0

Q ss_pred             CCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCC--CCCcEEEcCCCCCccc-cCccccCC-CCCCEEeCCCccC
Q 040451           19 INLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNL--SFPRSINLPNKSFRGE-IPHEVSNL-FRLQNLTLTNNYF   94 (566)
Q Consensus        19 ~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~   94 (566)
                      ..|-+|++..-.+  ...+.+|+.+-++.   |..++.+  +.+..+.+......+. +...+.-+ +.|++|||++..+
T Consensus       123 ~VC~Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~i  197 (419)
T KOG2120|consen  123 GVCKRFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVI  197 (419)
T ss_pred             HHHHHHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhe
Confidence            3577999866554  56788999987765   2333333  2355555554433322 22222222 3589999999888


Q ss_pred             CCC-CCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-CCCC-CchhhcCCCCCCEEEeeCCcccccCc
Q 040451           95 SGK-ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENH-LKGQ-LPASIGNLSALQEIDVRGNRLGGRIP  171 (566)
Q Consensus        95 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~  171 (566)
                      +.. ....++.|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|++++|.......
T Consensus       198 t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V  277 (419)
T KOG2120|consen  198 TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV  277 (419)
T ss_pred             eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh
Confidence            743 23446789999999999999988777788888999999999765 3311 12224788999999999997754322


Q ss_pred             ccc-c-ccCccceeecccccccc----chhhhhCCCCCcEEEcccCcCc-ccCCccccCCCCCccEEEccCCccc-cccc
Q 040451          172 STI-S-HVRNLISFNVARNQFSG----MIPLIYNISSLQYIFIHTNRFH-GSLPLDNGVNLPNLRYFSISGNNLT-GSLQ  243 (566)
Q Consensus       172 ~~l-~-~l~~L~~L~l~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~  243 (566)
                      ..+ . --++|+.|+++++.-.-    +......+++|.+||+++|.-. ......++ +++.|+++.++.|..- -...
T Consensus       278 tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~  356 (419)
T KOG2120|consen  278 TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETL  356 (419)
T ss_pred             hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHe
Confidence            222 1 12678888888875221    1133446778888888776532 22222222 6677777777776322 1112


Q ss_pred             cccccCCCCceEeccccc
Q 040451          244 DSLSNATNLQGLEINGNL  261 (566)
Q Consensus       244 ~~l~~l~~L~~L~l~~~~  261 (566)
                      -.+...|.|.+|++.++.
T Consensus       357 ~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeccCcceEEEEecccc
Confidence            234556667777776654

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=1.7e-09  Score=113.28  Aligned_cols=111  Identities=36%  Similarity=0.535  Sum_probs=83.2

Q ss_pred             cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451          453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      +.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+..+++|+.|++++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            56777777777777777777888888888888887777777778888888888888888777777778888888888888


Q ss_pred             cccccCCccCcCC-CCCCeeeCCCCcCcccCC
Q 040451          533 NLSGHIPQYLENL-SFLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       533 ~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~p  563 (566)
                      ++++.+|..+... .++..+++.+|+.....|
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCccccCCC
Confidence            8877777766542 456677777776544443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=7e-10  Score=77.63  Aligned_cols=61  Identities=38%  Similarity=0.582  Sum_probs=35.9

Q ss_pred             CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451          498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  558 (566)
Q Consensus       498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  558 (566)
                      |+|++|++++|+++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3455666666666654445556666666666666666555555566666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.7e-09  Score=75.70  Aligned_cols=61  Identities=38%  Similarity=0.535  Sum_probs=50.4

Q ss_pred             CCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcc
Q 040451          474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       474 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      |+|++|++++|.+....++.|.++++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5678888888888866667888888888888888888877778888888888888888875

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=2.9e-10  Score=101.00  Aligned_cols=180  Identities=18%  Similarity=0.188  Sum_probs=127.6

Q ss_pred             CCCEEecccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch---hhhhCCCCCcEE
Q 040451          131 MLQILNIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI---PLIYNISSLQYI  206 (566)
Q Consensus       131 ~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L  206 (566)
                      .||++||+...|+.. +-..+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.--...   -.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            599999999888732 3334578899999999999998777777888899999999887633222   456789999999


Q ss_pred             EcccCcCcccCC-ccccCCCCCccEEEccCCccc---cccccccccCCCCceEeccccc-ccccccccccCCCCCCEEEC
Q 040451          207 FIHTNRFHGSLP-LDNGVNLPNLRYFSISGNNLT---GSLQDSLSNATNLQGLEINGNL-FSGKVSINFSRLQNLSRLNL  281 (566)
Q Consensus       207 ~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  281 (566)
                      ++++|.+..... ..+..--++|+.|+++|+.-.   .........+|+|.+||+++|. ++......|.+++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            999998764432 222223478999999988432   1222233568999999999874 44444556778899999999


Q ss_pred             CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCc
Q 040451          282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR  315 (566)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  315 (566)
                      +.|..-  .++.   ...+...|+|.+|++.++-
T Consensus       346 sRCY~i--~p~~---~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDI--IPET---LLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCC--ChHH---eeeeccCcceEEEEecccc
Confidence            988632  2211   1345677888888887763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-09  Score=106.99  Aligned_cols=218  Identities=25%  Similarity=0.311  Sum_probs=130.3

Q ss_pred             cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451           55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  134 (566)
                      ..+..++.++++.|.+. .+...+..+++|+.|++.+|.+.. +...+..+++|++|++++|.++..  ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            34566667777777776 444446777888888888887762 333367788888888888888743  34666777888


Q ss_pred             EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc-ccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      |++++|.++ . ...+..++.|+.+++++|++...-+ . +..+.+++.+++++|.+.... .+.....+..+++..|.+
T Consensus       145 L~l~~N~i~-~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  145 LNLSGNLIS-D-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             heeccCcch-h-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccc
Confidence            888888877 2 3345557788888888888764322 1 466777888888877766443 112222333335555555


Q ss_pred             cccCCccccCCCCC--ccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451          214 HGSLPLDNGVNLPN--LRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       214 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      ...-+..   ....  |+.+++.++++.... ..+..+..+..+++..+++.....  +...+.+..+....+.+
T Consensus       221 ~~~~~l~---~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  221 SKLEGLN---ELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKL  289 (414)
T ss_pred             eeccCcc---cchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchh
Confidence            4111111   1222  677777777766331 334555666777777666542221  23334444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=2.5e-09  Score=107.08  Aligned_cols=201  Identities=26%  Similarity=0.265  Sum_probs=106.3

Q ss_pred             hccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCc
Q 040451          350 ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLI  428 (566)
Q Consensus       350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~  428 (566)
                      ..+++|+.|++++|.|+..  ..+..++.|+.|++++|.+.+.  ..+..++.|+.+++++|.+...-+ . ...+.+++
T Consensus       115 ~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE  189 (414)
T ss_pred             hhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchH
Confidence            3444555555555555433  1233344455555555555411  223335555555555555542211 1 34455555


Q ss_pred             EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCC--CCCEEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451          429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK--NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  506 (566)
                      .+.+.+|.+...-  .+...... ..+++..|.+....+  +..+.  +|+.+++++|++. ..++.+..+..+..|++.
T Consensus       190 ~l~l~~n~i~~i~--~~~~~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  190 ELDLGGNSIREIE--GLDLLKKL-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLS  263 (414)
T ss_pred             HHhccCCchhccc--chHHHHHH-HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchh
Confidence            5555555543111  11111111 223455555542211  22222  3788888888887 444567777888888888


Q ss_pred             CCcccccCCcCCCCCCCCCEEeCCCCcccc---cCCcc-CcCCCCCCeeeCCCCcCcccCC
Q 040451          507 DNSFTRSIPSTLSSLKSITELDLSRNNLSG---HIPQY-LENLSFLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       507 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~-l~~~~~L~~L~l~~~~l~~~~p  563 (566)
                      ++.+...  ..+...+.+..+....+++..   ..... ....+.++.+++.++++....+
T Consensus       264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  264 SNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            8877632  356666777888888887652   22222 4566778888888887776443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.43  E-value=7.2e-08  Score=84.95  Aligned_cols=256  Identities=21%  Similarity=0.196  Sum_probs=121.7

Q ss_pred             hcCCCCCCEEEeeCCcccccCccc----ccccCccceeecccccccc-----------chhhhhCCCCCcEEEcccCcCc
Q 040451          150 IGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVARNQFSG-----------MIPLIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~-----------~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      +..+..+..+++++|.+......+    +++-.+|+..++++-....           ....+..||+|+.++++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            334566666777766664332222    3334556666555432111           1145566777777777777665


Q ss_pred             ccCCccc---cCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC
Q 040451          215 GSLPLDN---GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA  291 (566)
Q Consensus       215 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (566)
                      ...|...   .++...|++|.+.+|++....-..++.  .|.+|  ..|       .-..+-|.|+.+.+..|.+...+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcH
Confidence            4444322   234456666666666544221111110  00000  000       001233455555555555444333


Q ss_pred             CChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccch-
Q 040451          292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP-  370 (566)
Q Consensus       292 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-  370 (566)
                      ..+.  ..+.....|+.+.+..|.+.......+.                    ...+..+++|+.|++++|.++.... 
T Consensus       175 ~~~a--~~l~sh~~lk~vki~qNgIrpegv~~L~--------------------~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         175 ELSA--ALLESHENLKEVKIQQNGIRPEGVTMLA--------------------FLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             HHHH--HHHHhhcCceeEEeeecCcCcchhHHHH--------------------HHHHHHhCcceeeeccccchhhhhHH
Confidence            2222  2233334556666655554422111111                    1123455667777777776654322 


Q ss_pred             ---hhccCCCCCCEEEccCCcccccCCccc------cCCCCCCeEecccCcceecCCc-----cc--cCCCCCcEEEccC
Q 040451          371 ---LAIGELKSLQMLFLNENFLRGTIPSSL------GNLTLLTQLILEVNNLQGKIPP-----SI--GNCQNLILLTTRK  434 (566)
Q Consensus       371 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~~-----~~--~~~~~L~~L~l~~  434 (566)
                         .++...+.|++|.+..|-++......+      ...|+|..|...+|...+....     .+  ..+|-|..+.+.|
T Consensus       233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence               234445566777777776654332221      1246677777776655432211     11  2456666677777


Q ss_pred             Cccc
Q 040451          435 NKLS  438 (566)
Q Consensus       435 ~~l~  438 (566)
                      |.+.
T Consensus       313 Nr~~  316 (388)
T COG5238         313 NRIK  316 (388)
T ss_pred             Ccch
Confidence            7665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=7.3e-09  Score=103.10  Aligned_cols=196  Identities=29%  Similarity=0.311  Sum_probs=120.0

Q ss_pred             cCCCCEEecCCccccccc-hhhccCCCCCCEEEccCCcccccCCccccC-CCCCCeEecccCc--ce-------ecCCcc
Q 040451          352 LVNLNALGVESNQLAGTI-PLAIGELKSLQMLFLNENFLRGTIPSSLGN-LTLLTQLILEVNN--LQ-------GKIPPS  420 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~--l~-------~~~~~~  420 (566)
                      +++++.+.+-...-.+-. |-.+..+.+|+.|.+.+|.+.. .. .+.. -..|+.|.-.+.-  +.       +.+-.+
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence            344444444333222111 4566678899999999998762 11 1111 1234443222210  00       011000


Q ss_pred             ccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCc-CCcCCCC
Q 040451          421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT-TLGGCTS  499 (566)
Q Consensus       421 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~  499 (566)
                      + ....|.+.+++.|.+. .+...+.-++. ++.|+++.|.+.+..  .+..++.|++|||++|.+. .+|. ...+|. 
T Consensus       161 ~-~Wn~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  161 P-VWNKLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-  233 (1096)
T ss_pred             h-hhhhHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence            0 1135667777788775 44334333333 488888888887543  6788899999999999988 4443 334444 


Q ss_pred             CcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccC-CccCcCCCCCCeeeCCCCcC
Q 040451          500 LEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHF  558 (566)
Q Consensus       500 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~l  558 (566)
                      |..|++++|.++.  ..++.++.+|+-||+++|-+.+.- .+-+..+.+|+.|+|.||++
T Consensus       234 L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  234 LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            9999999998883  257888899999999999876432 13355677899999999965

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=6.6e-08  Score=86.32  Aligned_cols=204  Identities=20%  Similarity=0.148  Sum_probs=112.3

Q ss_pred             ccCCCCEEecCCccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC-CccccCCCCC
Q 040451          351 NLVNLNALGVESNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI-PPSIGNCQNL  427 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L  427 (566)
                      ....++.+++.+|.+.+  .+...+.++|.|+.|+++.|++...+...-....+|+.|.+++..+...- ...+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46778888998888762  23345678889999999988876322211135678888888888765433 2345667788


Q ss_pred             cEEEccCCcccc--cCchhhhccCCcCcEEEccCCcceec--CCccccCCCCCCEEEccCCcccccC-CcCCcCCCCCcE
Q 040451          428 ILLTTRKNKLSG--TVPRQLLHIITLPVLLDLSDNLLNGH--FPAEVGNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEY  502 (566)
Q Consensus       428 ~~L~l~~~~l~~--~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~  502 (566)
                      +.+.++.|.+..  ....+.....+-+..+....|....-  ......-+|++..+.+..|++.... -..+..++.+--
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            888888774420  11112222222223334444432100  0001123466666777777665332 233445566666


Q ss_pred             EeCCCCccccc-CCcCCCCCCCCCEEeCCCCcccccCCc------cCcCCCCCCeeeCC
Q 040451          503 LGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLSGHIPQ------YLENLSFLSFLNLS  554 (566)
Q Consensus       503 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~l~  554 (566)
                      |+|+.+++..- .-+.+..+++|+.|.++++++.+....      .++.+++++.|+=+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            66666666521 113455566777777777776543221      13445555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=5.3e-08  Score=85.77  Aligned_cols=161  Identities=18%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             cccCCCCCCEEecccCcCCCCCchhh----cCCCCCCEEEeeCCcccccCccc-------------ccccCccceeeccc
Q 040451          125 EIGNLLMLQILNIAENHLKGQLPASI----GNLSALQEIDVRGNRLGGRIPST-------------ISHVRNLISFNVAR  187 (566)
Q Consensus       125 ~~~~l~~L~~L~l~~~~i~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~  187 (566)
                      ++-+|++|+..+||+|.+....|+.+    .+-..|.+|.+++|.+--.....             .++-|.|+++.+..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            34566777777777766654444443    44566777777777543111111             12335677777777


Q ss_pred             cccccch----hh-hhCCCCCcEEEcccCcCcccC-----CccccCCCCCccEEEccCCcccccc----ccccccCCCCc
Q 040451          188 NQFSGMI----PL-IYNISSLQYIFIHTNRFHGSL-----PLDNGVNLPNLRYFSISGNNLTGSL----QDSLSNATNLQ  253 (566)
Q Consensus       188 ~~~~~~~----~~-l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~  253 (566)
                      |++....    .. +..-..|+.+.+..|.+...-     ....+ .+.+|+.|++..|.++...    ..++...+.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            6665443    11 111235666666666554210     01111 4556666666666555332    23344445566


Q ss_pred             eEecccccccccccccc------cCCCCCCEEECCCCcC
Q 040451          254 GLEINGNLFSGKVSINF------SRLQNLSRLNLGENNL  286 (566)
Q Consensus       254 ~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~  286 (566)
                      .|.+..|.++......+      ...|+|..|....|.+
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            66666665543332221      2345555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=3.8e-09  Score=105.06  Aligned_cols=173  Identities=17%  Similarity=0.223  Sum_probs=91.0

Q ss_pred             cEEEEEcCCCCCcccC-cccCcCCCCCcEEEcCCCCCccc-----cCccc--------------------cC------CC
Q 040451           35 RVTGLDLRQQSVGGVL-SPFVGNLSFPRSINLPNKSFRGE-----IPHEV--------------------SN------LF   82 (566)
Q Consensus        35 ~v~~l~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~-----~~~~~--------------------~~------l~   82 (566)
                      +...+.+-...-.+.. |-.|..|+.|++|.|+++.+...     +...+                    +.      .-
T Consensus        85 kt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn  164 (1096)
T KOG1859|consen   85 KTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWN  164 (1096)
T ss_pred             hheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhh
Confidence            3444554444433333 56778888999999988876521     00000                    00      11


Q ss_pred             CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEee
Q 040451           83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVR  162 (566)
Q Consensus        83 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  162 (566)
                      .|.+.+.++|.+. ..-.++.-++.|+.|+|++|++++.  ..+..|++|++|||+.|.++ .+|..=..-..|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            2344444444443 2233344556666666666666532  24566666666666666665 333221111236666666


Q ss_pred             CCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEcccCcC
Q 040451          163 GNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~  213 (566)
                      +|.++.  ..++.++++|+.||++.|-+.+..  ..+..+..|+.|++.+|++
T Consensus       241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            665542  234556666666666666555433  4455555666666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.34  E-value=2.4e-08  Score=93.24  Aligned_cols=279  Identities=19%  Similarity=0.111  Sum_probs=137.0

Q ss_pred             CCceEeccccccccccc--ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC-ccccccchhHhhc
Q 040451          251 NLQGLEINGNLFSGKVS--INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANL  327 (566)
Q Consensus       251 ~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~  327 (566)
                      .|+.|.+.+++-.+.-+  ..-..+++++.|.+.++...+    +......-..|+.|+++++..| .+++.....++.-
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            57778888776432222  112467788888777776221    2223344456788888888875 4665555556666


Q ss_pred             cccccEEEccccCcc-C-ccchhhhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCc-ccccCC-ccccCCC
Q 040451          328 SITMTEIANGSNQIS-G-TIPDVIANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENF-LRGTIP-SSLGNLT  401 (566)
Q Consensus       328 ~~~l~~l~l~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~l~  401 (566)
                      .++++++.++-|... + -+....+++..++++...+|.-.+.  +...-+.+..+.++++..|. ++++.. ..-..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            667777766655432 1 1222344555566666665532111  11122344555666655553 232211 1112356


Q ss_pred             CCCeEecccCcc-eecCCccc-cCCCCCcEEEccCCcc-cccCchhhhccCCcCcEEEccCCcceec--CCccccCCCCC
Q 040451          402 LLTQLILEVNNL-QGKIPPSI-GNCQNLILLTTRKNKL-SGTVPRQLLHIITLPVLLDLSDNLLNGH--FPAEVGNLKNL  476 (566)
Q Consensus       402 ~L~~L~l~~~~l-~~~~~~~~-~~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~l~~~~~L  476 (566)
                      .|+.+..+++.- +...-.++ .++.+|+.+.+.+|+. ++.--..+......++.+++..|.....  +...-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            677777766642 21111222 3566777777777752 2112222333333335555555543211  11112345556


Q ss_pred             CEEEccCCccc-cc----CCcCCcCCCCCcEEeCCCCccc-ccCCcCCCCCCCCCEEeCCCCc
Q 040451          477 VSLDISSNMFS-GE----IPTTLGGCTSLEYLGMQDNSFT-RSIPSTLSSLKSITELDLSRNN  533 (566)
Q Consensus       477 ~~L~l~~~~~~-~~----~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~  533 (566)
                      +.|.+++|... +.    ....-.++..|+.+.+++|+.+ +...+.+..+++|+.+++.+|.
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            66666655432 11    0111233445555566555433 2333444555566666665554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.32  E-value=2.9e-08  Score=92.75  Aligned_cols=258  Identities=17%  Similarity=0.108  Sum_probs=119.5

Q ss_pred             cccCccceeeccccccccch---hhhhCCCCCcEEEcccCc-CcccCCccccCCCCCccEEEccCCc-ccccccc-cccc
Q 040451          175 SHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFIHTNR-FHGSLPLDNGVNLPNLRYFSISGNN-LTGSLQD-SLSN  248 (566)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~  248 (566)
                      ..++++++|++.+|...+..   ..-..++.|+++++..|. ++..........+++|++|++++|. +.+.... ...+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            34555555555555422211   222345556666555532 2322222233456666666666652 2221111 1233


Q ss_pred             CCCCceEeccccccccccc--ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCc-cccccchhHh
Q 040451          249 ATNLQGLEINGNLFSGKVS--INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR-FGGVLPFSLA  325 (566)
Q Consensus       249 l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~  325 (566)
                      +..++.+...+|.-.+.-.  ..-...+.+.++++..|...    ++......-..+..|++++.+++. +++.....+.
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l----TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL----TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc----cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            4444555444442110000  00022233444444444211    111222233345566666666663 3333344455


Q ss_pred             hccccccEEEccccCccC-ccchh-hhccCCCCEEecCCcccccc--chhhccCCCCCCEEEccCCcc-cccC----Ccc
Q 040451          326 NLSITMTEIANGSNQISG-TIPDV-IANLVNLNALGVESNQLAGT--IPLAIGELKSLQMLFLNENFL-RGTI----PSS  396 (566)
Q Consensus       326 ~~~~~l~~l~l~~~~~~~-~~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~-~~~~----~~~  396 (566)
                      .-..+++.+.+..|+.-. .-... =.+++.|+.+++..+.....  +...-.+++.|+++.++.|.. ++..    ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            555566666666655211 11111 13566677777777643311  222334567777777777653 2221    112


Q ss_pred             ccCCCCCCeEecccCcce-ecCCccccCCCCCcEEEccCCc
Q 040451          397 LGNLTLLTQLILEVNNLQ-GKIPPSIGNCQNLILLTTRKNK  436 (566)
Q Consensus       397 ~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~  436 (566)
                      -..+..|+.+.+++++.. ......+..|++|+.+++.+|.
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            234566777777777643 2333455667777777776664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2e-07  Score=83.27  Aligned_cols=83  Identities=23%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCCcccccCCccc-cCCCCCCEEecccCcCCCC-CchhhcCCCCC
Q 040451           81 LFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIAENHLKGQ-LPASIGNLSAL  156 (566)
Q Consensus        81 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L  156 (566)
                      .+.++.+||.+|.++..  +...+.++|.|++|+++.|.+...+ ... ....+|++|-|.++.+... ....+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34455555555554421  1122344555555555555443211 111 2333455555554443321 12223344444


Q ss_pred             CEEEeeCC
Q 040451          157 QEIDVRGN  164 (566)
Q Consensus       157 ~~L~l~~~  164 (566)
                      +.|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55544444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=1.3e-07  Score=74.44  Aligned_cols=103  Identities=19%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             EEccCCcceecCCccc-cCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCc
Q 040451          455 LDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN  533 (566)
Q Consensus       455 L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  533 (566)
                      +++++|.+.+. |..| ..++.++.|++.+|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.
T Consensus        58 i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   58 ISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             EecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            44444444422 2222 33445666666666666 55555666666666666666666 345555556666666666666


Q ss_pred             ccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451          534 LSGHIPQYLENLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       534 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~  561 (566)
                      +.....+.| -....-..++.++++.++
T Consensus       135 ~~eid~dl~-~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  135 RAEIDVDLF-YSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             cccCcHHHh-ccccHHHHHhcCCccccc
Confidence            653332322 122333444455555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.10  E-value=1.1e-05  Score=77.82  Aligned_cols=137  Identities=13%  Similarity=0.153  Sum_probs=73.1

Q ss_pred             hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC-cceecCCccccCCCCC
Q 040451          349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGKIPPSIGNCQNL  427 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L  427 (566)
                      +..+..++.|++++|.++. +|   .-.++|++|.+++|.-...+|..+.  ++|+.|.+++| .+. .+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence            4456777888888776663 33   1234688888877654335555442  57777777777 343 333      346


Q ss_pred             cEEEccCCcccccCchhhhccCCcCcEEEccCCcce--ecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeC
Q 040451          428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN--GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM  505 (566)
Q Consensus       428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  505 (566)
                      +.|++.++...     .+..++..++.|.+.+++..  ...+..+.  ++|++|++++|... ..|+.+.  .+|+.|++
T Consensus       115 e~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCc-----ccccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            66666554432     12233333455555332211  01111111  46777777776655 4444444  57777777


Q ss_pred             CCC
Q 040451          506 QDN  508 (566)
Q Consensus       506 ~~~  508 (566)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=8.6e-06  Score=69.02  Aligned_cols=101  Identities=23%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCCCCEEeCCC
Q 040451          453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKSITELDLSR  531 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~  531 (566)
                      ..+|+++|.+...  ..|..++.|.+|.+++|.|+.+.|..-..++.|..|.+.+|.+.+.. .+.+..||.|+.|.+-+
T Consensus        45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            5678888877633  34778888888888888888666655555677888888888776422 24577788888888888


Q ss_pred             CcccccC---CccCcCCCCCCeeeCCC
Q 040451          532 NNLSGHI---PQYLENLSFLSFLNLSY  555 (566)
Q Consensus       532 n~~~~~~---~~~l~~~~~L~~L~l~~  555 (566)
                      |+++.--   .-.+..+|+|+.||.++
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            8886321   12356778888888664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=1.1e-06  Score=92.01  Aligned_cols=152  Identities=14%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc------------Cccc---cCCCCCCEEeCCCccC-CCCC
Q 040451           35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI------------PHEV---SNLFRLQNLTLTNNYF-SGKI   98 (566)
Q Consensus        35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~------------~~~~---~~l~~L~~L~l~~~~~-~~~~   98 (566)
                      ++..+++.+..+....-..+.+.. |++|.|.+-......            ...+   ..-.+|++||+++... ...-
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            566666666555443333334444 666666543221110            0000   0124566666666432 1111


Q ss_pred             Cccc-ccCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCccccc
Q 040451           99 LTDL-SHCSNVMKFEASNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTIS  175 (566)
Q Consensus        99 ~~~~-~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~  175 (566)
                      +..+ ..+|.|+.|.+++-.+.. .......+.++|+.||+++++++. + ..++++++|+.|.+++-.+.. .....+-
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            2222 355666666665544321 112223445555555555555552 2 455555555555555544331 1112234


Q ss_pred             ccCccceeeccccc
Q 040451          176 HVRNLISFNVARNQ  189 (566)
Q Consensus       176 ~l~~L~~L~l~~~~  189 (566)
                      +|++|+.||++...
T Consensus       218 ~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  218 NLKKLRVLDISRDK  231 (699)
T ss_pred             cccCCCeeeccccc
Confidence            45555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=5.9e-05  Score=72.89  Aligned_cols=54  Identities=22%  Similarity=0.253  Sum_probs=23.4

Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451          376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN  435 (566)
Q Consensus       376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      +.++++|++++|.++ .+|.   -..+|++|.+++|.--..+|..+  .++|+.|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            445555555555444 3331   12345555555443222333222  234555555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.8e-05  Score=50.42  Aligned_cols=34  Identities=26%  Similarity=0.631  Sum_probs=12.2

Q ss_pred             CCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451          132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus       132 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  166 (566)
                      |++|++++|+++ .+|..+.++++|++|++++|++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            333333333333 2333333344444444443333

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=1.1e-06  Score=69.34  Aligned_cols=130  Identities=20%  Similarity=0.235  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCCCCccc--CcccCcCCCCCcEEEcCCCCCccccCccc-cCCCCCCEEeCCCccCCCCCCcccccCCCCCE
Q 040451           34 QRVTGLDLRQQSVGGV--LSPFVGNLSFPRSINLPNKSFRGEIPHEV-SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMK  110 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  110 (566)
                      .....++|+.+.+...  .+..+.+..+|+..+|++|.+. .+|..| .+++.++.|++++|.++ +.|..+..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455566666655411  2234455566667777777777 555443 45567777777777776 56666777777777


Q ss_pred             EEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       111 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      |+++.|.+. ..|..+..+.+|-+|+..++.+. .++-.+-.-.+....++.++.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence            777777776 55666767777777777777666 34443322223333334444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=2.5e-05  Score=49.68  Aligned_cols=37  Identities=32%  Similarity=0.605  Sum_probs=27.7

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCEEecccCcCC
Q 040451          106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLK  143 (566)
Q Consensus       106 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  143 (566)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46888888888887 56666888888888888888877

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.80  E-value=8.8e-06  Score=85.39  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             CCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc-cccccccCCCCCCE
Q 040451          200 ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG-KVSINFSRLQNLSR  278 (566)
Q Consensus       200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~  278 (566)
                      +|+|+.|.+.+-.+...-......++|+|..|++++++++..  ..++.+++|+.|.+.+-.+.. .....+-++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555544332211112223556666666666665533  345555666666555544432 11223445666666


Q ss_pred             EECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEE
Q 040451          279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA  335 (566)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~  335 (566)
                      |++|.................-..+|.|+.|+.++..+.+...+.+....++++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            666655433322111111122234667777777776666555554444444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.78  E-value=4.7e-05  Score=64.68  Aligned_cols=12  Identities=33%  Similarity=0.631  Sum_probs=6.0

Q ss_pred             CCCCccEEEccC
Q 040451          224 NLPNLRYFSISG  235 (566)
Q Consensus       224 ~~~~L~~L~l~~  235 (566)
                      .+|+|+.|+...
T Consensus       138 klp~l~~LDF~k  149 (233)
T KOG1644|consen  138 KLPSLRTLDFQK  149 (233)
T ss_pred             ecCcceEeehhh
Confidence            345555555544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.43  E-value=4.6e-05  Score=48.38  Aligned_cols=30  Identities=57%  Similarity=1.132  Sum_probs=22.5

Q ss_pred             CccCCC-CCCCCCCCCCCC--CCCCCcccCccC
Q 040451            1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG   30 (566)
Q Consensus         1 ~~~~~~-~~~~~~~~w~~~--~~~c~w~~~~~~   30 (566)
                      ||.++. +|..++.+|+.+  .++|.|.||+|.
T Consensus        11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            678888 789999999987  799999999993

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.39  E-value=0.00056  Score=56.22  Aligned_cols=37  Identities=22%  Similarity=0.472  Sum_probs=12.4

Q ss_pred             CCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451          493 TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR  531 (566)
Q Consensus       493 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  531 (566)
                      +|..++.|+.+++..+ +.......|.++ .|+.+.+..
T Consensus        76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            3444444444444332 222233334443 444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.39  E-value=0.0006  Score=56.03  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=28.3

Q ss_pred             cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCC
Q 040451          469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL  548 (566)
Q Consensus       469 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  548 (566)
                      .|..+++|+.+.+.++ +......+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +.......+.++ .|
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            3444444444444443 3323333444444444444433 222223334444444444444433 332333334443 44


Q ss_pred             CeeeCC
Q 040451          549 SFLNLS  554 (566)
Q Consensus       549 ~~L~l~  554 (566)
                      +.+.+.
T Consensus       106 ~~i~~~  111 (129)
T PF13306_consen  106 KEINIP  111 (129)
T ss_dssp             -EEE-T
T ss_pred             eEEEEC
Confidence            444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00012  Score=65.07  Aligned_cols=82  Identities=21%  Similarity=0.333  Sum_probs=43.4

Q ss_pred             ccCCCCCCEEecccC--cCCCCCchhhcCCCCCCEEEeeCCcccccCccc---ccccCccceeeccccccccch----hh
Q 040451          126 IGNLLMLQILNIAEN--HLKGQLPASIGNLSALQEIDVRGNRLGGRIPST---ISHVRNLISFNVARNQFSGMI----PL  196 (566)
Q Consensus       126 ~~~l~~L~~L~l~~~--~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~----~~  196 (566)
                      +..+++|++|.++.|  ++.+.++.....+++|+++++++|++..  ++.   +..+.+|..|++.+|......    ..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence            445556666666666  4444444444455666666666666541  222   334555666666666554433    23


Q ss_pred             hhCCCCCcEEEcc
Q 040451          197 IYNISSLQYIFIH  209 (566)
Q Consensus       197 l~~~~~L~~L~l~  209 (566)
                      +.-+++|++|+-.
T Consensus       139 f~ll~~L~~LD~~  151 (260)
T KOG2739|consen  139 FLLLPSLKYLDGC  151 (260)
T ss_pred             HHHhhhhcccccc
Confidence            3445666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00025  Score=63.11  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             CCCCCCEEeCCCc--cCCCCCCcccccCCCCCEEEccCCccc
Q 040451           80 NLFRLQNLTLTNN--YFSGKILTDLSHCSNVMKFEASNNKLE  119 (566)
Q Consensus        80 ~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~  119 (566)
                      .+++|+.|.++.|  ++...+..-...+++|++|++++|++.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3445555555555  333223333334455555555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.16  E-value=4.4e-05  Score=78.98  Aligned_cols=129  Identities=12%  Similarity=0.072  Sum_probs=72.5

Q ss_pred             CCCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCC-ccccc----CCccccCCCCCCEEecccCc-CCCCCchhhc
Q 040451           80 NLFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNN-KLEAE----IPVEIGNLLMLQILNIAENH-LKGQLPASIG  151 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~  151 (566)
                      .++.|+.|.+.++.-...  .......++.|+.|+++++ .....    .......+++|+.|+++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467777777777743222  2344567777888887763 11111    11233456777788887776 5544444443


Q ss_pred             C-CCCCCEEEeeCCc-ccccCcc-cccccCccceeeccccccccch---hhhhCCCCCcEEEc
Q 040451          152 N-LSALQEIDVRGNR-LGGRIPS-TISHVRNLISFNVARNQFSGMI---PLIYNISSLQYIFI  208 (566)
Q Consensus       152 ~-l~~L~~L~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l  208 (566)
                      . +++|++|.+.++. +++.... ....++.|++|+++.|......   .....+++++.+.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            3 6778888776665 3332222 2345677888888777653221   33445666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.01  E-value=8e-05  Score=77.00  Aligned_cols=221  Identities=18%  Similarity=0.078  Sum_probs=97.9

Q ss_pred             ccccEEEccccCccCc--cchhhhccCCCCEEecCCc-cccccc----hhhccCCCCCCEEEccCCc-ccccCCccccC-
Q 040451          329 ITMTEIANGSNQISGT--IPDVIANLVNLNALGVESN-QLAGTI----PLAIGELKSLQMLFLNENF-LRGTIPSSLGN-  399 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~-  399 (566)
                      +.++.+.+..+.-...  .......++.|+.|+++++ ......    ......+.+|+.++++.+. +++.....+.. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            4555565555533222  2233445566666666652 111010    1122334566666666665 44333333322 


Q ss_pred             CCCCCeEecccCc-ceecC-CccccCCCCCcEEEccCCccc-ccCchhhhccCCcCcEEEccCCcceecCCccccCCCCC
Q 040451          400 LTLLTQLILEVNN-LQGKI-PPSIGNCQNLILLTTRKNKLS-GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNL  476 (566)
Q Consensus       400 l~~L~~L~l~~~~-l~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L  476 (566)
                      +++|++|.+..|. ++... ......+++|++|++++|... +..-..+....+.++.+.+..          ...++.+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~l  337 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPSL  337 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCccH
Confidence            5566666655554 33221 122334556666666655432 110111111111111111111          1112333


Q ss_pred             CEEEccCCccc---ccCCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCC--------------CCEEeCCCCccccc-
Q 040451          477 VSLDISSNMFS---GEIPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKS--------------ITELDLSRNNLSGH-  537 (566)
Q Consensus       477 ~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~--------------L~~L~l~~n~~~~~-  537 (566)
                      +.+.+.++...   .........++.++.+.+.++...+.. ...+..++.              ++.|+++.|..... 
T Consensus       338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~  417 (482)
T KOG1947|consen  338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK  417 (482)
T ss_pred             HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence            34433332221   111223566777777777777644322 133344444              47777777765422 


Q ss_pred             CCccCcC-CCCCCeeeCCCCcCc
Q 040451          538 IPQYLEN-LSFLSFLNLSYNHFE  559 (566)
Q Consensus       538 ~~~~l~~-~~~L~~L~l~~~~l~  559 (566)
                      ....... +..++.+++++++..
T Consensus       418 ~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  418 GLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             chHHHhhhhhccccCCccCcccc
Confidence            2222222 556777777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=3.3e-05  Score=68.79  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccC-cccccccCccceeec
Q 040451          107 NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI-PSTISHVRNLISFNV  185 (566)
Q Consensus       107 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l  185 (566)
                      +.+.|+.-+|.+++.  ....+++.|++|.|+-|+|+.  -+.+..|++|++|.|+.|.|.... ...+.++++|+.|++
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            334444555544421  223455666666666666652  234556666666666666654211 123455666666666


Q ss_pred             cccccccch------hhhhCCCCCcEEE
Q 040451          186 ARNQFSGMI------PLIYNISSLQYIF  207 (566)
Q Consensus       186 ~~~~~~~~~------~~l~~~~~L~~L~  207 (566)
                      ..|.-.+..      ..+..+|+|++||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            665543322      2344455666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.00013  Score=65.22  Aligned_cols=85  Identities=25%  Similarity=0.261  Sum_probs=44.3

Q ss_pred             CCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCC
Q 040451          226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK  305 (566)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (566)
                      .+.++|+..+|+++++  .....++.|+.|.++-|.++...+  +..+++|++|+|..|.|..     +..+..+.++|+
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-----ldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-----LDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-----HHHHHHHhcCch
Confidence            3445555555555533  223445556666665555543222  4555566666665555432     222345556666


Q ss_pred             CCEEEcccCccccc
Q 040451          306 LEVLDLHSNRFGGV  319 (566)
Q Consensus       306 L~~L~l~~~~~~~~  319 (566)
                      |+.|.+..|.-.+.
T Consensus        90 Lr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   90 LRTLWLDENPCCGE  103 (388)
T ss_pred             hhhHhhccCCcccc
Confidence            66666666654433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.0006  Score=58.19  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             cEEEccCCcceecCCccccCCCCCCEEEccCCcccccC--CcCCcCCCCCcEEeCCCC-cccccCCcCCCCCCCCCEEeC
Q 040451          453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI--PTTLGGCTSLEYLGMQDN-SFTRSIPSTLSSLKSITELDL  529 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l  529 (566)
                      +.+|.+++.|.....+.+..+++++.|.+.+|+-.+..  ...=+..++|++|+|++| +||+....++..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            67888888887666667778888888888888654221  000113478888888888 677766677788888888888


Q ss_pred             CCCccc
Q 040451          530 SRNNLS  535 (566)
Q Consensus       530 ~~n~~~  535 (566)
                      ++-+..
T Consensus       184 ~~l~~v  189 (221)
T KOG3864|consen  184 YDLPYV  189 (221)
T ss_pred             cCchhh
Confidence            776643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.00093  Score=57.07  Aligned_cols=83  Identities=20%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             CCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc-cCCcCCC-CCCCCCEEeCCCCc-ccccCCccCcCCCCCCee
Q 040451          475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR-SIPSTLS-SLKSITELDLSRNN-LSGHIPQYLENLSFLSFL  551 (566)
Q Consensus       475 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L  551 (566)
                      .++.+|-+++.|..+.-+.+..+++++.|.+.+|.-.+ --.+.++ -.++|+.|++++|+ |++....++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            47889999999987777888888999999998885432 1112222 24899999999996 776777888889999998


Q ss_pred             eCCCCc
Q 040451          552 NLSYNH  557 (566)
Q Consensus       552 ~l~~~~  557 (566)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            887644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.36  E-value=7.5e-05  Score=75.04  Aligned_cols=66  Identities=29%  Similarity=0.338  Sum_probs=35.6

Q ss_pred             cCCCC-CCEEEccCCccccc----CCcCCcCC-CCCcEEeCCCCcccccCC----cCCCCCCCCCEEeCCCCcccc
Q 040451          471 GNLKN-LVSLDISSNMFSGE----IPTTLGGC-TSLEYLGMQDNSFTRSIP----STLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       471 ~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      ...++ +.+|++.+|.+.+.    ....+..+ ..++++++++|.+++...    +.+..++.++.+.+++|++..
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            33344 55566666666532    22334444 566666666666664322    234455566666666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.72  E-value=0.014  Score=30.59  Aligned_cols=12  Identities=25%  Similarity=0.343  Sum_probs=5.2

Q ss_pred             CCEEEccCCccc
Q 040451          108 VMKFEASNNKLE  119 (566)
Q Consensus       108 L~~L~L~~~~~~  119 (566)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.55  E-value=0.016  Score=30.44  Aligned_cols=10  Identities=40%  Similarity=0.806  Sum_probs=3.7

Q ss_pred             EEeCCCCccc
Q 040451          502 YLGMQDNSFT  511 (566)
Q Consensus       502 ~L~l~~~~~~  511 (566)
                      +|+|++|+++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.07  E-value=0.00042  Score=69.75  Aligned_cols=116  Identities=24%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             hhhhccCCCCEEecCCcccccc----chhhcc----CCCCCCEEEccCCcccccC----CccccCCCC-CCeEecccCcc
Q 040451          347 DVIANLVNLNALGVESNQLAGT----IPLAIG----ELKSLQMLFLNENFLRGTI----PSSLGNLTL-LTQLILEVNNL  413 (566)
Q Consensus       347 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~~~l  413 (566)
                      ..+....+++.++++.|.+...    .+..+.    ...++++|.+++|.++...    ...+...++ +.++++..|++
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            4455567777777777766321    122222    3566777777777765221    122333444 55677777766


Q ss_pred             eec----CCccccCC-CCCcEEEccCCcccccCchhhh----ccCCcCcEEEccCCcce
Q 040451          414 QGK----IPPSIGNC-QNLILLTTRKNKLSGTVPRQLL----HIITLPVLLDLSDNLLN  463 (566)
Q Consensus       414 ~~~----~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~----~~~~~l~~L~l~~~~~~  463 (566)
                      ...    ....+..+ ..++.+++..|++++.....+.    ... .++.+.+++|.+.
T Consensus       246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT  303 (478)
T ss_pred             chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence            532    11223333 4556666777766644333222    222 2355566666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.76  E-value=0.031  Score=27.16  Aligned_cols=12  Identities=42%  Similarity=0.443  Sum_probs=5.2

Q ss_pred             CCCeeeCCCCcC
Q 040451          547 FLSFLNLSYNHF  558 (566)
Q Consensus       547 ~L~~L~l~~~~l  558 (566)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.71  E-value=0.00099  Score=58.08  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             ccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC
Q 040451           78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  157 (566)
                      +..+...+.||++.|++. .+-..|+.+..|..|+++.|.+. ..|..++++..++.+++..|..+ ..|.+++..++++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344555556666666544 23334555556666666666655 56667777777777777777666 6777777777777


Q ss_pred             EEEeeCCccc
Q 040451          158 EIDVRGNRLG  167 (566)
Q Consensus       158 ~L~l~~~~~~  167 (566)
                      +++..++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7777776643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.52  E-value=0.0029  Score=55.29  Aligned_cols=88  Identities=13%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             cCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451           53 FVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML  132 (566)
Q Consensus        53 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L  132 (566)
                      .+..+.+.+.|+++.|+.. .+-..|+.++.+.+||++.|.+. ..|.++.....++.+++..|... ..|.++++.+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3445555555555555544 33333444455555555555554 44555555555555555555444 455555555555


Q ss_pred             CEEecccCcCC
Q 040451          133 QILNIAENHLK  143 (566)
Q Consensus       133 ~~L~l~~~~i~  143 (566)
                      +++++.++.++
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            55555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.53  E-value=0.36  Score=26.37  Aligned_cols=16  Identities=50%  Similarity=0.644  Sum_probs=9.2

Q ss_pred             CCCCEEeCCCCccccc
Q 040451          522 KSITELDLSRNNLSGH  537 (566)
Q Consensus       522 ~~L~~L~l~~n~~~~~  537 (566)
                      ++|+.|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.53  E-value=0.36  Score=26.37  Aligned_cols=16  Identities=50%  Similarity=0.644  Sum_probs=9.2

Q ss_pred             CCCCEEeCCCCccccc
Q 040451          522 KSITELDLSRNNLSGH  537 (566)
Q Consensus       522 ~~L~~L~l~~n~~~~~  537 (566)
                      ++|+.|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.27  E-value=0.73  Score=24.55  Aligned_cols=18  Identities=33%  Similarity=0.394  Sum_probs=9.5

Q ss_pred             CCCCEEEcccCccccccc
Q 040451          304 TKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~  321 (566)
                      ++|+.|++++|.+++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            566667776666654433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	566
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-41
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-41
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-09
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-09
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		9e-09
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-08
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-05
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		5e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 238/507 (46%), Gaps = 55/507 (10%)
Query: 25  TGVTCGHRRQRVTGLDLRQQSVGGVLSPF--VGNLSFPRSINLPNKSFRGEIPHEVS--- 79
           +G  C      +T LDL + S+ G ++    +G+ S  + +N+ + +   + P +VS   
Sbjct: 94  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 148
Query: 80  NLFRLQNLTLTNNYFSGK-----ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
            L  L+ L L+ N  SG      +L+D   C  +     S NK+  +  V++   + L+ 
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEF 204
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
           L+++ N+    +P  +G+ SALQ +D+ GN+L G     IS    L   N++ NQF G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN-LQ 253
           P                     LPL +      L+Y S++ N  TG + D LS A + L 
Sbjct: 264 P--------------------PLPLKS------LQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 254 GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
           GL+++GN F G V   F     L  L L  NN     + +L   TLL     L+VLDL  
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDTLL-KMRGLKVLDLSF 352
Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTI-PDVIANLVN-LNALGVESNQLAGTIPL 371
           N F G LP SL NLS ++  +   SN  SG I P++  N  N L  L +++N   G IP 
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 372 AIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLT 431
            +     L  L L+ N+L GTIPSS             +N L+G+IP  +   + L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 432 TRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
              N L+G +P  L +   L            G  P  +G L+NL  L +S+N FSG IP
Sbjct: 473 LDFNDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTL 518
             LG C SL +L +  N F  +IP+ +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 238/507 (46%), Gaps = 55/507 (10%)
Query: 25  TGVTCGHRRQRVTGLDLRQQSVGGVLSPF--VGNLSFPRSINLPNKSFRGEIPHEVS--- 79
           +G  C      +T LDL + S+ G ++    +G+ S  + +N+ + +   + P +VS   
Sbjct: 91  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGL 145
Query: 80  NLFRLQNLTLTNNYFSGK-----ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
            L  L+ L L+ N  SG      +L+D   C  +     S NK+  +  V++   + L+ 
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEF 201
Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
           L+++ N+    +P  +G+ SALQ +D+ GN+L G     IS    L   N++ NQF G I
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN-LQ 253
           P                     LPL +      L+Y S++ N  TG + D LS A + L 
Sbjct: 261 P--------------------PLPLKS------LQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 254 GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
           GL+++GN F G V   F     L  L L  NN     + +L   TLL     L+VLDL  
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF----SGELPMDTLL-KMRGLKVLDLSF 349
Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTI-PDVIANLVN-LNALGVESNQLAGTIPL 371
           N F G LP SL NLS ++  +   SN  SG I P++  N  N L  L +++N   G IP 
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 372 AIGELKSLQMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLILLT 431
            +     L  L L+ N+L GTIPSS             +N L+G+IP  +   + L  L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 432 TRKNKLSGTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
              N L+G +P  L +   L            G  P  +G L+NL  L +S+N FSG IP
Sbjct: 470 LDFNDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTL 518
             LG C SL +L +  N F  +IP+ +
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 11/227 (4%)
Query: 122 IPVEIGNLLMLQILNIAE-NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
           IP  + NL  L  L I   N+L G +P +I  L+ L  + +    + G IP  +S ++ L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 181 ISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
           ++ + + N  SG +P  I ++ +L  I    NR  G++P   G         +IS N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
           G +  + +N  NL  ++++ N+  G  S+ F   +N  +++L +N+L    A DL  + L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGL 242
Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP 346
             N   L  LDL +NR  G LP  L  L   +  +    N + G IP
Sbjct: 243 SKN---LNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 4/222 (1%)
Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
           +P SLANL         G N + G IP  IA L  L+ L +    ++G IP  + ++K+L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 380 QMLFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSIGNCQNLIL-LTTRKNKLS 438
             L  + N L GT+P S            + N + G IP S G+   L   +T  +N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 439 GTVPRQLLHIITLPVXXXXXXXXXXGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498
           G +P    ++    V          G      G+ KN   + ++ N  + ++   +G   
Sbjct: 188 GKIPPTFANLNLAFV--DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           +L  L +++N    ++P  L+ LK +  L++S NNL G IPQ
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +LN G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 201
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
            +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +LN G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 201
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
            +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 202 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 105/223 (47%), Gaps = 26/223 (11%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +LN   N +      DL     L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 154 QQLNFSSNQVT-----DLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA- 202
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
            +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 46  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 104
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F+   N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 105 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 157
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +L+ G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 158 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 206
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
            +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 207 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 241

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 47  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 105
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F+   N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 106 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 158
Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +L+ G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 159 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207
Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
            +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 208 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 242

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRLQN 275
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   +++  + LQ 
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335
           LS            ++N +  +  L N T LE LD+ SN+   +    LA L+   + IA
Sbjct: 156 LSF-----------SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
              NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 203 TN-NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 28/224 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ + + PL  N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL-KNLTKLVDILMNNNQIADI 100
Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRLQN 275
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   +++  + LQ 
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335
           LS            ++N +  +  L N T LE LD+ SN+   +    LA L+   + IA
Sbjct: 156 LSF-----------SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
             +NQIS   P  +  L NL+ L +  NQL       IG L SL
Sbjct: 203 -TNNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 238

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 51  SPFVGNLSFPRS-----INLPNKSFRGEIPHEVSNLFRLQNLTLT----NNYFSGKILTD 101
           +PF+  +  P       +N     F   +    S L RLQ L L      N+F   ++T 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT- 399
Query: 102 LSHCSNVMKFEASNNKLEAEIPVEIGNLLM-LQILNIAENHLKGQLPASIGNLSALQEID 160
             + S++   + S N L +            + +LN++ N L G +   +     ++ +D
Sbjct: 400 -KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456
Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPL 219
           +  NR+   IP  ++H++ L   NVA NQ   +   +++ ++SLQYI++H N      P 
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN------PW 509
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDS 245
           D     P +RY S   N  +G +++S
Sbjct: 510 D--CTCPGIRYLSEWINKHSGVVRNS 533

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)
Query: 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGN 164
           ++  K +  +NKL +        L  L++L + +N L+  LPA I   L  L+ + V  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 165 RLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGV 223
           +L          + NL    + RNQ   + P +++ ++ L Y+ +  N    SLP     
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283
            L +L+   +  N L    + +    T L+ L+++ N         F  L+ L  L L E
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 284 N 284
           N
Sbjct: 215 N 215

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 145/372 (38%), Gaps = 80/372 (21%)
Query: 25  TGVTCGHRRQRVTGLDLRQQSVGGVLS-PFVGNLSFPRSINLPNKSFRGEIPHEVSNLFR 83
           T V      + +T L +  + V  +    ++ NL +   +NL         P  +SNL +
Sbjct: 35  TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEY---LNLNGNQITDISP--LSNLVK 89
Query: 84  LQNLTLTNNYFSGKILTDLSHCSNVMKF-EASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
           L NL     Y     +TD+S   N+    E   N+        + NL     LN+  NH 
Sbjct: 90  LTNL-----YIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHN 144
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISS 202
              L + + N + L  + V  +++    P  I+++ +L S ++  NQ   + PL  +++S
Sbjct: 145 LSDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA-SLTS 200
Query: 203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262
           L Y   + N+     P+                           +N T L  L+I  N  
Sbjct: 201 LHYFTAYVNQITDITPV---------------------------ANXTRLNSLKIGNNKI 233
Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
           +     + S L NLS+L   E  +GT   +D++ +  LT    L V              
Sbjct: 234 T-----DLSPLANLSQLTWLE--IGTNQISDINAVKDLTKLKXLNV-------------- 272
Query: 323 SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQML 382
                         GSNQIS     V+ NL  LN+L + +NQL       IG L +L  L
Sbjct: 273 --------------GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 383 FLNENFLRGTIP 394
           FL++N +    P
Sbjct: 317 FLSQNHITDIRP 328

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 76  HEVSNLFRLQNLT---LTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
           H++S L  L NLT   LT N             +N+ +     N+L++        L  L
Sbjct: 76  HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
             LN+A N L+         L+ L E+D+  N+L          +  L    + +NQ   
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 193 MIPLIYN-ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
           +   +++ ++SLQYI++H N      P D     P +RY S   N  +G +++S
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN------PWD--CTCPGIRYLSEWINKHSGVVRNS 241

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 9/160 (5%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
           LPN+RY ++ GN L      +L   TNL  L + GN      +  F +L NL  L L EN
Sbjct: 62  LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344
            L +      D +T LT       L L+ N+    LP  + +    +T +   +NQ+   
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
              V   L  L  L +  NQL          L SL  ++L
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 223 VNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFSRLQNLSR 278
           V+LP+L +  +S N L+  G    S    T+L+ L+++   F+G +++  NF  L+ L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSITMTEIANG 337
           L+   +NL     ++      L N   L++   H+   F G+    L++L +   ++A  
Sbjct: 401 LDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL--KMAGN 455
Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN--FLRGTIP 394
           S Q    +PD+   L NL  L +   QL    P A   L SLQ+L ++ N  F   T P
Sbjct: 456 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 14/175 (8%)
Query: 223 VNLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINGNLFSGKVSI--NFSRLQNLSR 278
           V+LP+L +  +S N L+  G    S    T+L+ L+++   F+G +++  NF  L+ L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSITMTEIANG 337
           L+   +NL     ++      L N   L++   H+   F G+    L++L +   ++A  
Sbjct: 401 LDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL--KMAGN 455
Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
           S Q    +PD+   L NL  L +   QL    P A   L SLQ+L +  N L+  
Sbjct: 456 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-128
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-121
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-70
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  393 bits (1011), Expect = e-128
 Identities = 148/532 (27%), Positives = 243/532 (45%), Gaps = 22/532 (4%)

Query: 39  LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI 98
           LD+   +    + PF+G+ S  + +++      G+    +S    L+ L +++N F G I
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 99  LTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIAENHLKGQLPASIGNLSALQ 157
                   ++     + NK   EIP  + G    L  L+++ NH  G +P   G+ S L+
Sbjct: 264 --PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 158 EIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSGMIPL-IYNIS-SLQYIFIHTNRFH 214
            + +  N   G +P  T+  +R L   +++ N+FSG +P  + N+S SL  + + +N F 
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 215 GSLPLDNGVN-LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273
           G +  +   N    L+   +  N  TG +  +LSN + L  L ++ N  SG +  +   L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTE 333
             L  L L  N L  G          L     LE L L  N   G +P  L+N +  +  
Sbjct: 442 SKLRDLKLWLNML-EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNW 494

Query: 334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI 393
           I+  +N+++G IP  I  L NL  L + +N  +G IP  +G+ +SL  L LN N   GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 394 PSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL--ILLTTRKNKLSGTVPRQLLHIITL 451
           P+++   +      +  N + GK    I N              +  G    QL  + T 
Sbjct: 555 PAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 452 PVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
               +++  +  GH      N  +++ LD+S NM SG IP  +G    L  L +  N  +
Sbjct: 611 -NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
            SIP  +  L+ +  LDLS N L G IPQ +  L+ L+ ++LS N+  G +P
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  373 bits (959), Expect = e-121
 Identities = 166/576 (28%), Positives = 261/576 (45%), Gaps = 49/576 (8%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQ---QSVGGVLSPFVGNLS 58
           K  L D   +   W+++ N C + GVTC  R  +VT +DL           +S  + +L+
Sbjct: 21  KDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77

Query: 59  FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKL 118
              S+ L N    G +         L +L L+ N  SG +                    
Sbjct: 78  GLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPV-------------------- 116

Query: 119 EAEIPVEIGNLLMLQILNIAENHLKGQLPASIG-NLSALQEIDVRGNRLGGRIPSTI--- 174
                  +G+   L+ LN++ N L      S G  L++L+ +D+  N + G         
Sbjct: 117 --TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 175 SHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234
                L    ++ N+ SG +  +    +L+++ + +N F   +P     +   L++  IS
Sbjct: 175 DGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDIS 231

Query: 235 GNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDL 294
           GN L+G    ++S  T L+ L I+ N F G   I    L++L  L+L EN   TG   D 
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKF-TGEIPD- 287

Query: 295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP-DVIANLV 353
               L   C  L  LDL  N F G +P    + S  +  +A  SN  SG +P D +  + 
Sbjct: 288 ---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMR 343

Query: 354 NLNALGVESNQLAGTIPLAIGELK-SLQMLFLNENFLRGTIPSSLGNLTL--LTQLILEV 410
            L  L +  N+ +G +P ++  L  SL  L L+ N   G I  +L       L +L L+ 
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 411 NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV 470
           N   GKIPP++ NC  L+ L    N LSGT+P  L  +  L   L L  N+L G  P E+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL-RDLKLWLNMLEGEIPQEL 462

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
             +K L +L +  N  +GEIP+ L  CT+L ++ + +N  T  IP  +  L+++  L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 531 RNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC 566
            N+ SG+IP  L +   L +L+L+ N F G +P   
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  343 bits (881), Expect = e-109
 Identities = 150/537 (27%), Positives = 248/537 (46%), Gaps = 26/537 (4%)

Query: 39  LDLRQQSVGGVLS-PFVGNLSFPRSINLPNKSFRGEIPHEV---SNLFRLQNLTLTNNYF 94
           L++   ++           L+    ++L   S  G              L++L ++ N  
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 95  SGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS 154
           SG +  D+S C N+   + S+N     IP  +G+   LQ L+I+ N L G    +I   +
Sbjct: 191 SGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 247

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNR 212
            L+ +++  N+  G IP     +++L   ++A N+F+G IP  L     +L  + +  N 
Sbjct: 248 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

Query: 213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSL-QDSLSNATNLQGLEINGNLFSGKVSINFS 271
           F+G++P   G +   L   ++S NN +G L  D+L     L+ L+++ N FSG++  + +
Sbjct: 306 FYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 272 RL-QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSIT 330
            L  +L  L+L  NN  +G                L+ L L +N F G +P +L+N S  
Sbjct: 365 NLSASLLTLDLSSNNF-SGPILPNLCQNPKNT---LQELYLQNNGFTGKIPPTLSNCS-E 419

Query: 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390
           +  +    N +SGTIP  + +L  L  L +  N L G IP  +  +K+L+ L L+ N L 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT 450
           G IPS L N T L  + L  N L G+IP  IG  +NL +L    N  SG +P +L    +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 451 LPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN-- 508
           L + LDL+ NL NG  PA +       S  I++N  +G+    +      +      N  
Sbjct: 540 L-IWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 509 SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
            F       L+ L +    +++     GH     +N   + FL++SYN   G +P E
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  294 bits (754), Expect = 1e-90
 Identities = 137/524 (26%), Positives = 220/524 (41%), Gaps = 49/524 (9%)

Query: 39  LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNNYFSGK 97
           L++      G + P    L   + ++L    F GEIP  +S     L  L L+ N+F G 
Sbjct: 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 98  ILTDLSHCSNVMKFEASNNKLEAEIPVE-IGNLLMLQILNIAENHLKGQLPASIGNLSA- 155
           +      CS +     S+N    E+P++ +  +  L++L+++ N   G+LP S+ NLSA 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 156 LQEIDVRGNRLGGRIPSTISHV--RNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNR 212
           L  +D+  N   G I   +       L    +  N F+G IP  + N S L  + +  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSR 272
             G++P   G +L  LR   +  N L G +   L     L+ L ++ N  +G++    S 
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
             NL+ ++L  N L TG          +     L +L L +N F G +P  L +   ++ 
Sbjct: 489 CTNLNWISLSNNRL-TGE-----IPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLI 541

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR-- 390
            +   +N  +GTIP  +          + +N +AG   + I      +      N L   
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT 450
           G     L  L+      +      G   P+  N  +++ L    N LSG +P+++  +  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 451 LPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
           L  +L+L  N ++G  P EVG+L+ L  LD+SSN   G IP  +   T L          
Sbjct: 658 L-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE-------- 708

Query: 511 TRSIPSTLSSLKSITELDLSRNNLSGHIPQY--LENLSFLSFLN 552
                           +DLS NNLSG IP+    E      FLN
Sbjct: 709 ----------------IDLSNNNLSGPIPEMGQFETFPPAKFLN 736

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 2e-14
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
               ++  +  GG  SP   N      +++      G IP E+ ++  L  L L +N  S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA 155
           G                         IP E+G+L  L IL+++ N L G++P ++  L+ 
Sbjct: 670 G------------------------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 156 LQEIDVRGNRLGGRIPST 173
           L EID+  N L G IP  
Sbjct: 706 LTEIDLSNNNLSGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  242 bits (621), Expect = 5e-76
 Identities = 83/277 (29%), Positives = 123/277 (44%), Gaps = 10/277 (3%)

Query: 294 LDFITLLTNCTKL----EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT--IPD 347
           L     L N T L       D  +  + GVL  +       +  +      +     IP 
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTY-RVNNLDLSGLNLPKPYPIPS 70

Query: 348 VIANLVNLNALGVES-NQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL 406
            +ANL  LN L +   N L G IP AI +L  L  L++    + G IP  L  +  L  L
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 407 ILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHF 466
               N L G +PPSI +  NL+ +T   N++SG +P        L   + +S N L G  
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
           P    NL NL  +D+S NM  G+     G   + + + +  NS    +   +   K++  
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248

Query: 527 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
           LDL  N + G +PQ L  L FL  LN+S+N+  G++P
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (486), Expect = 3e-56
 Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 15/301 (4%)

Query: 245 SLSNATNLQ----GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLL 300
            L N T L       +     + G +    ++   ++ L+L   NL          +   
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL-PKPYPIPSSLA-- 73

Query: 301 TNCTKLEVLDLHS-NRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
            N   L  L +   N   G +P ++A L+  +  +      +SG IPD ++ +  L  L 
Sbjct: 74  -NLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLT-LLTQLILEVNNLQGKIP 418
              N L+GT+P +I  L +L  +  + N + G IP S G+ + L T + +  N L GKIP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
           P+  N  NL  +   +N L G               + L+ N L      +VG  KNL  
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           LD+ +N   G +P  L     L  L +  N+    IP    +L+       + N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

Query: 539 P 539
           P
Sbjct: 308 P 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (447), Expect = 1e-50
 Identities = 73/321 (22%), Positives = 123/321 (38%), Gaps = 41/321 (12%)

Query: 182 SFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGV-NLPNLRYFSISG-NNL 238
           + +     + G++         +  + +         P+ + + NLP L +  I G NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFI- 297
            G +  +++  T L  L I     SG +    S+++ L  L+   N L +GT      + 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGT------LP 142

Query: 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNA 357
             +++   L  +    NR  G +P S  + S   T +    N+++G IP   ANL NL  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 358 LGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417
           + +  N L G   +  G  K+ Q + L +N L   +   +G    L  L L  N + G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLV 477
           P  +   + L  L                         ++S N L G  P   GNL+   
Sbjct: 261 PQGLTQLKFLHSL-------------------------NVSFNNLCGEIPQG-GNLQRFD 294

Query: 478 SLDISSNMFSGEIPTTLGGCT 498
               ++N      P  L  CT
Sbjct: 295 VSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (426), Expect = 1e-47
 Identities = 83/342 (24%), Positives = 122/342 (35%), Gaps = 63/342 (18%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRRQ--RVTGLDLRQQSVGGVLSPFVGNL 57
           K  L +P    SSW  + + C   W GV C    Q  RV  LDL   ++           
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK--------- 64

Query: 58  SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK 117
                           IP  ++NL  L  L +                          N 
Sbjct: 65  -------------PYPIPSSLANLPYLNFLYIGGI-----------------------NN 88

Query: 118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV 177
           L   IP  I  L  L  L I   ++ G +P  +  +  L  +D   N L G +P +IS +
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 178 RNLISFNVARNQFSGMIPL-IYNISSL-QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
            NL+      N+ SG IP    + S L   + I  NR  G +P     NL NL +  +S 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSR 206

Query: 236 NNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295
           N L G       +  N Q + +  N  +  +       +NL+ L+L  N +  GT     
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI-YGT----- 259

Query: 296 FI-TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +   LT    L  L++  N   G +P         ++  AN
Sbjct: 260 -LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  154 bits (391), Expect = 1e-42
 Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 30/207 (14%)

Query: 363 NQLAGTIPLAIGELKSLQMLFLNENFLRGT--IPSSLGNLTLLTQLIL-EVNNLQGKIPP 419
               G +     +   +  L L+   L     IPSSL NL  L  L +  +NNL G IPP
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
           +I     L  L                          ++   ++G  P  +  +K LV+L
Sbjct: 96  AIAKLTQLHYL-------------------------YITHTNVSGAIPDFLSQIKTLVTL 130

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKS-ITELDLSRNNLSGHI 538
           D S N  SG +P ++    +L  +    N  + +IP +  S     T + +SRN L+G I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPIE 565
           P    NL+ L+F++LS N  EG   + 
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (287), Expect = 2e-28
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 3/184 (1%)

Query: 37  TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRL-QNLTLTNNYFS 95
             LD    ++ G L P + +L     I        G IP    +  +L  ++T++ N  +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA 155
           GKI    ++  N+   + S N LE +  V  G+    Q +++A+N L   L   +G    
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN 245

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHG 215
           L  +D+R NR+ G +P  ++ ++ L S NV+ N   G IP   N+          N+   
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 216 SLPL 219
             PL
Sbjct: 306 GSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (286), Expect = 3e-28
 Identities = 41/178 (23%), Positives = 59/178 (33%), Gaps = 28/178 (15%)

Query: 393 IPSSLGNLTLL----TQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHI 448
           I   LGN T L               G +  +      +  L      L           
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP-------- 65

Query: 449 ITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS-NMFSGEIPTTLGGCTSLEYLGMQD 507
                             P+ + NL  L  L I   N   G IP  +   T L YL +  
Sbjct: 66  ---------------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
            + + +IP  LS +K++  LD S N LSG +P  + +L  L  +    N   G +P  
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  237 bits (606), Expect = 2e-70
 Identities = 91/591 (15%), Positives = 192/591 (32%), Gaps = 88/591 (14%)

Query: 12  TSSWNNSINLCQWT---GVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNK 68
            ++WN +  L  W    GV+      RVTGL L      G +   +G L+    + L + 
Sbjct: 57  GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 69  SFRG----EIPHEVSNLFRLQNLTLTNNYFSGKILTDLS--HCSNVMKFEASNNKLEAEI 122
             +       P  +S     +       ++    +        S+++K   +++  +  I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 123 PVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS 182
                  L    +    N++   +  ++  L+ L++  +  +              N   
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-- 232

Query: 183 FNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS 241
                 Q      L   N+  L  + ++       LP      LP ++  +++ N     
Sbjct: 233 ---EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISG 288

Query: 242 LQD--------SLSNATNLQGLEINGN-LFSGKVSINFSRLQNLSRLNLGENNLGTGTAN 292
            Q                +Q + I  N L +  V  +  +++ L  L    N L      
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---- 344

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDV--IA 350
               +    +  KL  L+L  N+    +P +    +  +  ++   N++   IP++    
Sbjct: 345 ---KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399

Query: 351 NLVNLNALGVESNQLAG-------TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLL 403
           ++  ++A+    N++          +     +  ++  + L+ N +           + L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 404 TQLILEVNNLQG-------KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD 456
           + + L  N L             +  N   L                           +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLL-------------------------TSID 494

Query: 457 LSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD------NS 509
           L  N L           L  LV +D+S N FS   PT     ++L+  G+++      N 
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
             R  P  ++   S+T+L +  N++     +   N+S L   ++  N    
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (529), Expect = 2e-59
 Identities = 79/536 (14%), Positives = 146/536 (27%), Gaps = 86/536 (16%)

Query: 35  RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF 94
            +    +        +            I   + +    +   V  L +L+   + N+ F
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPF 218

Query: 95  SGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS 154
             + + +     N         +      ++  NL  L  + +       +LP  +  L 
Sbjct: 219 VAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH 214
            +Q I+V  NR            + L                      +Q I+I  N   
Sbjct: 274 EMQLINVACNRGIS-GEQLKDDWQALAD--------------APVGEKIQIIYIGYNNLK 318

Query: 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ 274
                 +   +  L       N L G L  +  +   L  L +  N  +   +      +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334
            +  L+   N L       +  I    + + +  +D   N  G V   +           
Sbjct: 378 QVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-------- 424

Query: 335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG--- 391
                     +       +N++++ + +NQ++            L  + L  N L     
Sbjct: 425 ----------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 392 ----TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLH 447
                   +  N  LLT + L  N L   +         L  L                 
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT-TLPYLVG--------------- 517

Query: 448 IITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI------SSNMFSGEIPTTLGGCTSLE 501
                  +DLS N  +  FP +  N   L    I        N    E P  +  C SL 
Sbjct: 518 -------IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 502 YLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557
            L +  N     +   +    +I+ LD+  N        Y+          L Y+ 
Sbjct: 570 QLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  171 bits (435), Expect = 2e-46
 Identities = 65/421 (15%), Positives = 134/421 (31%), Gaps = 46/421 (10%)

Query: 39  LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF---- 94
            +               NL     + + N     ++P  +  L  +Q + +  N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 95  ----SGKILTDLSHCSNVMKFEASNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPAS 149
                 + L D      +       N L+   +   +  +  L +L    N L+G    +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348

Query: 150 IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL--IYNISSLQYIF 207
            G+   L  +++  N++     +       + + + A N+   +  +    ++S +  I 
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 208 IHTNRFHG-------SLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
              N            L         N+   ++S N ++   ++  S  + L  + + GN
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 261 LFSG-------KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
           + +          + NF     L+ ++L  N L T  ++D       T    L  +DL  
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA----TTLPYLVGIDLSY 522

Query: 314 NRFGGVLPFSLANLS-----ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
           N F    P    N S         +     N+     P+ I    +L  L + SN +   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
           +   I    ++ +L + +N       S +         +L  +  Q      I  C  L 
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-----DIRGCDALD 633

Query: 429 L 429
           +
Sbjct: 634 I 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (433), Expect = 5e-46
 Identities = 59/448 (13%), Positives = 124/448 (27%), Gaps = 80/448 (17%)

Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP 195
           N   +    Q   S+ +   +  + + G    GR+P  I  +  L    +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV-NE 121

Query: 196 LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA--TNLQ 253
            ++    +                       +         +   +  D       ++L 
Sbjct: 122 RLFGPKGIS-------------------ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 254 GLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHS 313
              IN +     +  +       +++    NN+   +         +   TKL    + +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-------VMRLTKLRQFYMGN 215

Query: 314 NRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
           + F                   +   Q   T      NL +L  + V +      +P  +
Sbjct: 216 SPFVAENICEAWENE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 374 GELKSLQMLFLNENFLR--------GTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSIGNC 424
             L  +Q++ +  N               +       +  + +  NNL+   +  S+   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
           + L                          +L+   N L G  P   G+   L SL+++ N
Sbjct: 330 KKL-------------------------GMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS--SLKSITELDLSRNNLSG------ 536
             +       G    +E L    N     IP+     S+  ++ +D S N +        
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 537 -HIPQYLENLSFLSFLNLSYNHFEGKVP 563
             +         +S +NLS N       
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (420), Expect = 3e-44
 Identities = 67/433 (15%), Positives = 132/433 (30%), Gaps = 53/433 (12%)

Query: 55  GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114
                  + N            +  NL  L ++ + N     K+ T L     +     +
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 115 NNKLEA--------EIPVEIGNLLMLQILNIAENHLK-GQLPASIGNLSALQEIDVRGNR 165
            N+  +        +   +      +QI+ I  N+LK   +  S+  +  L  ++   N+
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVN 224
           L G++P+       L S N+A NQ + +          ++ +    N+      + +  +
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 225 LPNLRYFSISGNNLTG-------SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS 277
           +  +     S N +          L  +     N+  + ++ N  S      FS    LS
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 278 RLNLGENNLGTGTANDLDFITL-LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN 336
            +NL  N L     N L        N   L  +DL  N+   +             +   
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD-----------DFRA 509

Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE------NFLR 390
                          L  L  + +  N      P       +L+   +        N   
Sbjct: 510 T-------------TLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT 450
              P  +     LTQL +  N+++  +   I    N+ +L  + N         +   I 
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 451 LPVLLDLSDNLLN 463
             + +   D   +
Sbjct: 613 AGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
           + +      +L+S   +T L L     SG +P  +  L+ L  L L  +  +    + 
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  229 bits (587), Expect = 6e-68
 Identities = 112/544 (20%), Positives = 201/544 (36%), Gaps = 35/544 (6%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
              LDL    +  + S    +    + ++L     +        +L  L  L LT N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLS 154
              L   S  S++ K  A    L +     IG+L  L+ LN+A N ++  +LP    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVARNQFSGMIPLIYNISSLQYIFIHT 210
            L+ +D+  N++     + +  +  +    +S +++ N  + + P  +    L  + +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ------DSLSNATNLQGLEINGN---L 261
           N    ++       L  L    +                 +L    NL   E        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
           +   +   F+ L N+S  +L    +          +   +     + L+L + +FG    
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 322 FSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA--GTIPLAIGELKSL 379
             L +L               G       +L +L  L +  N L+  G    +     SL
Sbjct: 322 LKLKSLKRLT------FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLS 438
           + L L+ N +  T+ S+   L  L  L  + +NL+     S+  + +NLI L        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 439 GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGC 497
                    + +L  +L ++ N    +F  ++   L+NL  LD+S        PT     
Sbjct: 435 VAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLSFLNLSYN 556
           +SL+ L M  N+F          L S+  LD S N++     Q L++  S L+FLNL+ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 557 HFEG 560
            F  
Sbjct: 554 DFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  188 bits (479), Expect = 1e-52
 Identities = 86/502 (17%), Positives = 154/502 (30%), Gaps = 46/502 (9%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
           +IP  +      +NL L+ N               +   + S  +++        +L  L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
             L +  N ++     +   LS+LQ++      L       I H++ L   NVA N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 193 MIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF----SISGNNLTGSLQDSL 246
                   N+++L+++ + +N+       D    L  +        +S N +      + 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 247 SNATNLQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
                L  L +  N  S  V       L  L    L           +    + L     
Sbjct: 198 KE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           L + +                            +     I D+   L N+++  + S  +
Sbjct: 257 LTIEEFRLAYL----------------------DYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 366 AGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ 425
                 +       Q L L            L +L  LT       + +G    S  +  
Sbjct: 295 ERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLP 347

Query: 426 NLILLTTRKNKLS--GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483
           +L  L   +N LS  G   +      +L   LDLS N +     +    L+ L  LD   
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 484 NMFSGEIPT-TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI-PQY 541
           +               +L YL +       +     + L S+  L ++ N+   +  P  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 542 LENLSFLSFLNLSYNHFEGKVP 563
              L  L+FL+LS    E   P
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSP 487

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  152 bits (385), Expect = 9e-40
 Identities = 85/511 (16%), Positives = 169/511 (33%), Gaps = 42/511 (8%)

Query: 55  GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF-SGKILTDLSHCSNVMKFEA 113
             LS  + +     +        + +L  L+ L + +N   S K+    S+ +N+   + 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 114 SNNKLEAEIPVEIGNLLMLQI----LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
           S+NK+++    ++  L  + +    L+++ N +    P +   +  L ++ +R N     
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 170 IPST-ISHVRNLISFNVARNQFSGMIPL-------IYNISSLQYIFIHTNRFHGSLPLDN 221
           +  T I  +  L    +   +F     L       +  + +L             L    
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 222 GV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRL 279
            +   L N+  FS+    +        S     Q LE+    F    ++    L+ L+  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 280 NLGENNLGTGTA-----------NDLDFITL----LTNCTKLEVLDLHSNRFGGVLPFSL 324
           +    N  +              N L F           T L+ LDL  N     +  + 
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 325 ANLSITMTEIANGSNQISGTIP-DVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLF 383
             L   +  +    + +       V  +L NL  L +               L SL++L 
Sbjct: 393 LGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 384 LNENFLRGTI-PSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVP 442
           +  N  +    P     L  LT L L    L+   P +  +  +L +L    N       
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 443 RQLLHIITLPVLLDLSDNLLNGHFPAEVGNL-KNLVSLDISSNMFSGEIPTT--LGGCTS 499
                + +L  +LD S N +      E+ +   +L  L+++ N F+        L     
Sbjct: 512 FPYKCLNSL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 500 LEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
              L ++      + PS       +  L+++
Sbjct: 571 QRQLLVEVERMECATPSDKQG-MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (381), Expect = 3e-39
 Identities = 70/428 (16%), Positives = 131/428 (30%), Gaps = 54/428 (12%)

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213
            + + +D+  N L      +      L   +++R +   +    Y               
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-------------- 73

Query: 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273
                     +L +L    ++GN +      + S  ++LQ L       +   +     L
Sbjct: 74  ----------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS---LANLSIT 330
           + L  LN+  N +              +N T LE LDL SN+   +       L  + + 
Sbjct: 124 KTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSLQML------F 383
              +    N ++   P     +  L+ L + +N  +  +    I  L  L++       F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNL---QGKIPPSIGNCQNLILLTTRKNKLSGT 440
            NE  L     S+L  L  LT     +  L      I        N+   +     +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 441 VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSL 500
                         L+L +         ++ +LK L                +     SL
Sbjct: 298 KDFSYNFGWQH---LELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSL 349

Query: 501 EYLGMQDN--SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
           E+L +  N  SF      +     S+  LDLS N +   +      L  L  L+  +++ 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 559 EGKVPIEC 566
           +       
Sbjct: 409 KQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (290), Expect = 3e-27
 Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 39/252 (15%)

Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
           LPFS  NL ++        N +         +   L  L +   ++      A   L  L
Sbjct: 26  LPFSTKNLDLS-------FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439
             L L  N ++     +   L+ L +L+    NL       IG+ + L            
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK----------- 127

Query: 440 TVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498
                          L+++ NL+     P    NL NL  LD+SSN       T L    
Sbjct: 128 --------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 499 SLEY----LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNL 553
            +      L +  N      P     +  + +L L  N  S ++ +  ++ L+ L    L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 554 SYNHFEGKVPIE 565
               F  +  +E
Sbjct: 233 VLGEFRNEGNLE 244

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 4/198 (2%)

Query: 48  GVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI-LTDLSHCS 106
           G  S      +  + ++L        +      L +L++L   ++        +      
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 107 NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQL-PASIGNLSALQEIDVRGNR 165
           N++  + S+             L  L++L +A N  +    P     L  L  +D+   +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVN 224
           L    P+  + + +L   N++ N F  +       ++SLQ +    N    S   +    
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 225 LPNLRYFSISGNNLTGSL 242
             +L + +++ N+   + 
Sbjct: 542 PSSLAFLNLTQNDFACTC 559

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (585), Expect = 6e-67
 Identities = 98/508 (19%), Positives = 180/508 (35%), Gaps = 29/508 (5%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
           ++P ++     +  L LT+N        + +  S +   +   N +    P     L ML
Sbjct: 18  QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
           ++LN+  N L      +    + L E+ +  N +     +     +NLI+ +++ N  S 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 193 MIP-LIYNISSLQYIFIHTNRFHGSLPLD-NGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
                   + +LQ + +  N+       + +     +L+   +S N +            
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 251 NLQGLEINGNLFSGKVSINFS---RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLE 307
            L GL +N       ++          ++  L+L  + L T +      +      T L 
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL----KWTNLT 251

Query: 308 VLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL--------- 358
           +LDL  N    V   S A L   +       N I       +  L N+  L         
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK-I 417
            +    L      +   LK L+ L + +N + G   +    L  L  L L  +    + +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 418 PPSIGNCQNLILLTT---RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNL 473
                       L      KNK+S         +  L  +LDL  N +      +    L
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-EVLDLGLNEIGQELTGQEWRGL 429

Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR--SIPSTLSSLKSITELDLSR 531
           +N+  + +S N +      +     SL+ L ++  +     S PS    L+++T LDLS 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 532 NNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           NN++      LE L  L  L+L +N+  
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  224 bits (574), Expect = 2e-65
 Identities = 100/532 (18%), Positives = 205/532 (38%), Gaps = 40/532 (7%)

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
             ++L + S +    +       L  L L++N  S   L       N+ +   SNNK++A
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 121 EIPVEIG--NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS--- 175
               E+       L+ L ++ N +K   P     +  L  + +   +LG  +   +    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 176 HVRNLISFNVARNQFSGMIPLIY---NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFS 232
              ++ + +++ +Q S      +     ++L  + +  N  +  +  D+   LP L YF 
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFF 278

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN---------FSRLQNLSRLNLGE 283
           +  NN+      SL    N++ L +  +     +S+          F  L+ L  LN+ +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNR--FGGVLPFSLANLSITMTEIAN-GSNQ 340
           N++    +N      + T    L+ L L ++      +   +  +L+ +   I N   N+
Sbjct: 339 NDIPGIKSN------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 341 ISGTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSLQMLFLNENFLRGTIPSSLGN 399
           IS    D  + L +L  L +  N++   +       L+++  ++L+ N       +S   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 400 LTLLTQLILEVNNLQG--KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDL 457
           +  L +L+L    L+     P      +NL +L    N ++      L  +  L  +LDL
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDL 511

Query: 458 SDNLLN--------GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS 509
             N L         G     +  L +L  L++ SN F             L+ + +  N+
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEG 560
                 S  ++  S+  L+L +N ++    +        L+ L++ +N F+ 
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  223 bits (570), Expect = 8e-65
 Identities = 104/556 (18%), Positives = 197/556 (35%), Gaps = 39/556 (7%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
           +T L+L    +  + +      S   S+++   +     P     L  L+ L L +N  S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA 155
                  + C+N+ +    +N ++            L  L+++ N L      +   L  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 156 LQEIDVRGNRLGGRIPSTISHVRN--LISFNVARNQFSGMIP-LIYNISSLQYIFIHTNR 212
           LQE+ +  N++       +    N  L    ++ NQ     P   + I  L  +F++  +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 213 FHGSLP--LDNGVNLPNLRYFSISGNNLTGSLQDSLSN--ATNLQGLEINGNLFSGKVSI 268
              SL   L   +   ++R  S+S + L+ +   +      TNL  L+++ N  +   + 
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 269 NFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN---------RFGGV 319
           +F+ L  L    L  NN+    ++       L     +  L+L  +             +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHS------LHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP----LAIGE 375
             FS   L   +  +    N I G   ++   L+NL  L + ++  +             
Sbjct: 321 DDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS-IGNCQNLILLTTRK 434
              L +L L +N +      +   L  L  L L +N +  ++        +N+  +    
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNG--HFPAEVGNLKNLVSLDISSNMFSGEIPT 492
           NK           + +L   L L    L      P+    L+NL  LD+S+N  +     
Sbjct: 440 NKYLQLTRNSFALVPSL-QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 493 TLGGCTSLEYLGMQDNSFTR--------SIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
            L G   LE L +Q N+  R             L  L  +  L+L  N       +  ++
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 545 LSFLSFLNLSYNHFEG 560
           L  L  ++L  N+   
Sbjct: 559 LFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  197 bits (503), Expect = 2e-55
 Identities = 90/459 (19%), Positives = 162/459 (35%), Gaps = 57/459 (12%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S+ KL  ++P ++   +   +LN+  N L+    A+    S L  +DV  N +    P  
Sbjct: 12  SHLKLT-QVPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
              +  L   N+  N+ S +    +                            NL    +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFA------------------------FCTNLTELHL 104

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAND 293
             N++     +      NL  L+++ N  S        +L+NL  L L  N +    + +
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA--- 350
           LD        + L+ L+L SN+     P     +   +  +   + Q+  ++ + +    
Sbjct: 165 LDIF----ANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELK--SLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408
              ++  L + ++QL+ T       LK  +L ML L+ N L      S   L  L    L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPA 468
           E NN+Q     S+    N+  L  +++                     +S   L      
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTK----------------QSISLASLPKIDDF 323

Query: 469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN--SFTRSIPSTLSSL--KSI 524
               LK L  L++  N   G       G  +L+YL + ++  S       T  SL    +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 525 TELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
             L+L++N +S         L  L  L+L  N    ++ 
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 2e-52
 Identities = 110/579 (18%), Positives = 194/579 (33%), Gaps = 60/579 (10%)

Query: 39  LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI 98
           L L   S+  + +          +++L +             L  LQ L L+NN      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 99  LTDLSHCSNVM--KFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG---NL 153
             +L   +N    K E S+N+++   P     +  L  L +    L   L   +      
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 154 SALQEIDVRGNRLGGRIPSTISHVR--NLISFNVARNQFSGMIP-LIYNISSLQYIFIHT 210
           ++++ + +  ++L     +T   ++  NL   +++ N  + +       +  L+Y F+  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 211 NRFHGSLPLDNGVNLPNLRY---------FSISGNNLTGSLQDSLSNATNLQGLEINGNL 261
           N             L N+RY          SIS  +L      S      L+ L +  N 
Sbjct: 282 NNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
             G  S  F+ L NL  L+L  +     T  +  F++L    + L +L+L  N+   +  
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIES 398

Query: 322 FSLANLS---------------ITMTEIAN---------GSNQISGTIPDVIANLVNLNA 357
            + + L                +T  E              N+      +  A + +L  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 358 LGVESNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ- 414
           L +    L    + P     L++L +L L+ N +       L  L  L  L L+ NNL  
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 415 -------GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFP 467
                  G     +    +L +L    N            +  L  ++DL  N LN    
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-KIIDLGLNNLNTLPA 577

Query: 468 AEVGNLKNLVSLDISSNMFSGEIPTTLGGC-TSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
           +   N  +L SL++  N+ +       G    +L  L M+ N F  +  S    +  I E
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 527 LDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFEGK 561
              +   LS H     P +        F   S       
Sbjct: 638 THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 8e-27
 Identities = 44/216 (20%), Positives = 76/216 (35%), Gaps = 6/216 (2%)

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
           V+         +L   +P  +    ++ +L L  N LR    ++    + LT L +  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 413 LQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGN 472
           +    P        L +L  + N+LS    +       L   L L  N +          
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL-TELHLMSNSIQKIKNNPFVK 119

Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLK--SITELDLS 530
            KNL++LD+S N  S     T     +L+ L + +N         L      S+ +L+LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 531 RNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC 566
            N +    P     +  L  L L+       +  + 
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 12/219 (5%)

Query: 37  TGLDLRQQSVGGVLSPFV-GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
             LDL    +G  L+      L     I L    +     +  + +  LQ L L      
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 96  G--KILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL--------KGQ 145
                 +      N+   + SNN +       +  L  L+IL++  N+L         G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 146 LPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQ 204
               +  LS L  +++  N            +  L   ++  N  + +   +  N  SL+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 205 YIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ 243
            + +  N          G    NL    +  N    + +
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (501), Expect = 1e-55
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 22/518 (4%)

Query: 55  GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114
             L     ++L              +  RL  L LT N       T LS    +      
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 115 NNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
              + +   + + N   L+ L +  NH+             L+ +D + N +       +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 175 SHVRNL--ISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDN-GVNLPNLRYF 231
           S ++    +S N+  N  +G+ P  ++ +  Q +     +    +        + +L   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 232 SISGNNLTGSLQDSLSN--ATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
           +    +               +++ + +  + F    S  F     L  L+L   +L   
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE- 292

Query: 290 TANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI-PDV 348
                   + L   + L+ L L +N+F  +   S +N   ++T ++   N     +    
Sbjct: 293 ------LPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGC 345

Query: 349 IANLVNLNALGVESNQLA--GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL 406
           + NL NL  L +  + +       L +  L  LQ L L+ N        +      L  L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 407 ILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465
            L    L+ K   S   N   L +L    + L  +  +    +  L   L+L  N     
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKG 464

Query: 466 FPAEVG---NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLK 522
              +      L  L  L +S    S            + ++ +  N  T S    LS LK
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 523 SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
            I  L+L+ N++S  +P  L  LS    +NL  N  + 
Sbjct: 525 GIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (479), Expect = 1e-52
 Identities = 83/489 (16%), Positives = 177/489 (36%), Gaps = 21/489 (4%)

Query: 84  LQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLK 143
            + L  + N       T  S   N+   + +  ++         +   L  L +  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISS 202
                ++    AL+ +      +       + + + L S  +  N  S +  P  +    
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 203 LQYIFIHTNRFHGSLPLDNGVNLPNLR--YFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
           L+ +    N  H  L  ++  +L        +++GN++   ++    ++   Q L   G 
Sbjct: 155 LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGT 212

Query: 261 LFSGKV--SINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG 318
                +   +  S +Q+L      + +    +    + +  ++    +E ++L  + F  
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS----VESINLQKHYFFN 268

Query: 319 VLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKS 378
           +   +    S  + E+   +  +S  +P  +  L  L  L + +N+      ++     S
Sbjct: 269 ISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 379 LQMLFLNENFLRGTIPS-SLGNLTLLTQLILEVNNLQ--GKIPPSIGNCQNLILLTTRKN 435
           L  L +  N  R  + +  L NL  L +L L  ++++        + N  +L  L    N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTL 494
           +              L  LLDL+   L          NL  L  L++S ++         
Sbjct: 387 EPLSLKTEAFKECPQL-ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 495 GGCTSLEYLGMQDNSFTRSI---PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 551
            G  +L++L +Q N F +      ++L +L  +  L LS  +LS        +L  ++ +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 552 NLSYNHFEG 560
           +LS+N    
Sbjct: 506 DLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (361), Expect = 1e-36
 Identities = 78/426 (18%), Positives = 142/426 (33%), Gaps = 23/426 (5%)

Query: 72  GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCS--NVMKFEASNNKLEAEIPVEIGNL 129
             I     +    Q+L          I   L + +  ++      +   E   P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 130 --LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR 187
             + ++ +N+ +++       +    S LQE+D+    L   +PS +  +  L    ++ 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310

Query: 188 NQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS--LQD 244
           N+F  +  +   N  SL ++ I  N     L      NL NLR   +S +++  S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
            L N ++LQ L ++ N      +  F     L  L+L    L        D  +   N  
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-----KVKDAQSPFQNLH 425

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI---PDVIANLVNLNALGVE 361
            L+VL+L  +            L   +  +    N          + +  L  L  L + 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 362 SNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI 421
              L+     A   LK +  + L+ N L  +   +L +L  +  L L  N++   +P  +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543

Query: 422 GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI 481
                   +  R+N L  T        I        +   L         N   L  + +
Sbjct: 544 PILSQQRTINLRQNPLDCT-----CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

Query: 482 SSNMFS 487
           S    S
Sbjct: 599 SDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (306), Expect = 2e-29
 Identities = 68/319 (21%), Positives = 118/319 (36%), Gaps = 16/319 (5%)

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
            SINL    F     +       LQ L LT  + S ++ + L   S + K   S NK E 
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

Query: 121 EIPVEIGNLLMLQILNIAENHLKGQL-PASIGNLSALQEIDVRGNRLG--GRIPSTISHV 177
              +   N   L  L+I  N  + +L    + NL  L+E+D+  + +         + ++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 178 RNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGN 236
            +L S N++ N+   +          L+ + +   R           NL  L+  ++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 237 NLTGSLQDSLSNATNLQGLEINGNLFSGKVSI---NFSRLQNLSRLNLGENNLGTGTAND 293
            L  S +        LQ L + GN F         +   L  L  L L   +L +   + 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH- 494

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV 353
                  T+   +  +DL  NR       +L++L      +A+  N IS  +P ++  L 
Sbjct: 495 -----AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS--NHISIILPSLLPILS 547

Query: 354 NLNALGVESNQLAGTIPLA 372
               + +  N L  T    
Sbjct: 548 QQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.1 bits (237), Expect = 9e-21
 Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 4/190 (2%)

Query: 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435
             S + L  + N L     ++   L  LT L L    +      +  +   L  L    N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLG 495
            L       L     L   L      ++      + N K L SL + SN  S        
Sbjct: 92  PLIFMAETALSGPKAL-KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSIT--ELDLSRNNLSGHIPQYLENLSFLSFLNL 553
               L+ L  Q+N+        +SSL+  T   L+L+ N+++  I     + +    LN 
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNF 209

Query: 554 SYNHFEGKVP 563
                   + 
Sbjct: 210 GGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 28/181 (15%)

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439
           +        L   IP +L        L    N L      +     NL            
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINL------------ 59

Query: 440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTS 499
                          LDL+   +         +   L +L +++N       T L G  +
Sbjct: 60  -------------TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 500 LEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           L++L       +      L + K++  L L  N++S            L  L+   N   
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 560 G 560
            
Sbjct: 167 Y 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (484), Expect = 3e-53
 Identities = 97/521 (18%), Positives = 178/521 (34%), Gaps = 33/521 (6%)

Query: 55  GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114
            N S  + ++L               L  L NL LT N          S  +++    A 
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 115 NNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPST 173
             KL +     IG L+ L+ LN+A N +   +LPA   NL+ L  +D+  N +     + 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 174 ISHVRNL----ISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLR 229
           +  +R      +S +++ N    +    +    L  + +  N    ++      NL  L 
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLE--------INGNLFSGKVSINFSRLQNLSRLNL 281
              +            +   + ++GL         +          + F  L N+S ++L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI 341
              ++          +  +    K + L +   +        L  L      +    N+ 
Sbjct: 293 AGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL----KSLTLTMNKG 340

Query: 342 SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK--SLQMLFLNENFLRGTIPSSLGN 399
           S  I      L +L+ L +  N L+ +   +  +L   SL+ L L+ N     + ++   
Sbjct: 341 S--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 400 LTLLTQLILEVNNLQGKIPPS-IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLS 458
           L  L  L  + + L+     S   + + L+ L               L + +L   L ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMA 456

Query: 459 DNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST 517
            N    +  + V  N  NL  LD+S                 L+ L M  N+      S 
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
            + L S++ LD S N +             L+F NL+ N  
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (442), Expect = 2e-47
 Identities = 90/513 (17%), Positives = 174/513 (33%), Gaps = 25/513 (4%)

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
           ++I+L     +    +  SN   LQ L L+                ++     + N +++
Sbjct: 35  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94

Query: 121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRN 179
             P     L  L+ L   E  L       IG L  L++++V  N +   ++P+  S++ N
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 180 LISFNVARNQFSGMIP-----LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS 234
           L+  +++ N    +       L  N      + +  N     +       +  L   ++ 
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLR 212

Query: 235 GNNLTGSLQ-DSLSNATNLQGLEINGNLFSGKVSINF---SRLQNLSRLNLGENNLGTGT 290
           GN  + ++    L N   L    +    F  + ++     S ++ L  + + E  L    
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA 350
               D +        +  + L       +          +++ I     Q          
Sbjct: 273 DFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT------L 325

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL--LTQLIL 408
           +L  L +L +  N+   +I      L SL  L L+ N L  +   S  +L    L  L L
Sbjct: 326 DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPA 468
             N     +  +    + L  L  + + L           +   + LD+S       F  
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 469 EVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITEL 527
               L +L +L ++ N F     +      T+L +L +      +       +L  +  L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 528 DLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
           ++S NNL      +   L  LS L+ S+N  E 
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (383), Expect = 2e-39
 Identities = 84/467 (17%), Positives = 161/467 (34%), Gaps = 37/467 (7%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
            + KL +++P +I +    + ++++ N LK     S  N S LQ +D+    +       
Sbjct: 19  MDQKL-SKVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 174 ISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFS 232
              + +L +  +  N      P     ++SL+ +     +   SL       L  L+  +
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLN 134

Query: 233 ISGNNLTG-SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS----RLNLGENNLG 287
           ++ N +    L    SN TNL  ++++ N        +   L+        L++  N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 288 TGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSIT--MTEIANGSNQI 341
                            KL  L L  N     +      +LA L +   +         +
Sbjct: 195 F-------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 342 SGTIPDVIANLVNL--NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN 399
               P ++  L ++  +   +          +    L ++  + L    +       +  
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPK 305

Query: 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD 459
                 L +    L+   P    +   L  LT   NK S +  +  L  ++    LDLS 
Sbjct: 306 HFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSY---LDLSR 359

Query: 460 NLLN--GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP-S 516
           N L+  G          +L  LD+S N     +     G   L++L  Q ++  R    S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
              SL+ +  LD+S  N           L+ L+ L ++ N F+    
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (304), Expect = 4e-29
 Identities = 71/378 (18%), Positives = 129/378 (34%), Gaps = 26/378 (6%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKI-------LTDLSHCSNVMKFEASNNKLEAEIPVE 125
            I  +     +L  LTL  N+ S  I       L  L     ++        LE   P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 126 IGNL--LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISF 183
           +  L  + +    +   +           L+ +  + + G  +  +    +       S 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSL 312

Query: 184 NVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ 243
           ++ R Q      L  ++  L+ + +  N+   S      V LP+L Y  +S N L+ S  
Sbjct: 313 SIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGC 367

Query: 244 DSLSN--ATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLT 301
            S S+    +L+ L+++ N     +S NF  L+ L  L+   + L       +   +   
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL-----KRVTEFSAFL 421

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP-DVIANLVNLNALGV 360
           +  KL  LD+               L+ ++  +    N        +V AN  NL  L +
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 361 ESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
              QL          L  LQ+L ++ N L     S    L  L+ L    N ++      
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 421 IGNCQNLILLTTRKNKLS 438
               ++L       N ++
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 54/267 (20%), Positives = 82/267 (30%), Gaps = 42/267 (15%)

Query: 308 VLDLHSNRFGGV---LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
                  +   V   +P S  N+ ++        N +        +N   L  L +   +
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNIDLSF-------NPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424
           +      A   L  L  L L  N ++   P S   LT L  L+     L       IG  
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISS 483
             L                           L+++ N ++    PA   NL NLV +D+S 
Sbjct: 128 ITL-------------------------KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 484 NMFSGEIPTTLGG----CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
           N         L            L M  N     I         + EL L  N  S +I 
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 540 QY-LENLSFLSFLNLSYNHFEGKVPIE 565
           +  L+NL+ L    L    F+ +  +E
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLE 248

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 34/146 (23%), Positives = 47/146 (32%), Gaps = 5/146 (3%)

Query: 415 GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK 474
           G + P I    N+        KLS  VP  +         +DLS N L         N  
Sbjct: 2   GSLNPCIEVVPNITYQCMD-QKLS-KVPDDIPSSTKN---IDLSFNPLKILKSYSFSNFS 56

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
            L  LD+S             G   L  L +  N      P + S L S+  L      L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 535 SGHIPQYLENLSFLSFLNLSYNHFEG 560
           +      +  L  L  LN+++N    
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHS 142

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (491), Expect = 5e-53
 Identities = 88/597 (14%), Positives = 176/597 (29%), Gaps = 103/597 (17%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLS 58
            S   +    + +WN +  L  W    GV   +   RVTGL L      G +   +G L+
Sbjct: 289 YSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLT 347

Query: 59  FPRSINL--------PNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMK 110
             + ++                E+  ++S   R   + +            L+    +  
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEE-RKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
               N +++        +L   QI N+  N +   +  +I  L+ LQ I    +      
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNL-TNRITF-ISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 171 PSTISHVRNLISFNVARNQFSGMIPL-IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLR 229
            +      N         +      L   N+  L  + ++       LP     +LP L+
Sbjct: 465 IAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQ 518

Query: 230 YFSISGNNLTG---------SLQDSLSNATNLQGLEINGNLFSG-KVSINFSRLQNLSRL 279
             +I+ N              L D       +Q   +  N       S +  ++  L  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 280 NLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN 339
           +   N +          +       KL  L L  N+    +P      +  +  +    N
Sbjct: 579 DCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHN 629

Query: 340 QISGTIPDV--IANLVNLNALGVESNQLAG-----TIPLAIGELKSLQMLFLNENFLRGT 392
           ++   IP++    ++  + ++    N++       +  +   +  +   + L+ N ++  
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 393 IPSSLGNLTLLTQLILEVNNLQ-------GKIPPSIGNCQNLILLTTRKNKLSGTVPRQL 445
                   + ++ +IL  N +             +  N   L                  
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL------------------ 730

Query: 446 LHIITLPVLLDLSDNLLNGHFPAE--VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
                    +DL  N L      +     L  L ++D+S N FS   PT     + L+  
Sbjct: 731 -------TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAF 781

Query: 504 GMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
           G++                     D   N +    P  +     L  L +  N    
Sbjct: 782 GIRHQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  181 bits (460), Expect = 5e-49
 Identities = 74/521 (14%), Positives = 149/521 (28%), Gaps = 71/521 (13%)

Query: 34  QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRG------EIPHEVSNLFRLQNL 87
           QR+   DL Q ++     P +  +     I+L +            I   +  L +LQ +
Sbjct: 396 QRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 88  TLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLP 147
              N+ F+   +      +N         K      +   NL  L  + +       QLP
Sbjct: 454 YFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 148 ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIF 207
             + +L  LQ +++  NR               IS    +  ++ +         +Q  +
Sbjct: 509 DFLYDLPELQSLNIACNR--------------GISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 208 IHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVS 267
           +  N         +   +  L       N +   L ++      L  L+++ N       
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL-EAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 268 INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327
              +    +  L    N L       +  I    +   +  +D   N+ G        ++
Sbjct: 613 DFCAFTDQVEGLGFSHNKL-----KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 328 S----ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL-------AGTIPLAIGEL 376
                I  + +    N+I     ++ A    ++ + + +N +                  
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 377 KSLQMLFLNENFLRGTIPSSL--GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRK 434
             L  + L  N L  ++        L  L+ + +  N      P    N   L     R 
Sbjct: 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTL 494
                                D   N +   +P  +    +L+ L I SN    ++   L
Sbjct: 786 Q-------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

Query: 495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535
                L  L + DN       +++          L  +   
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (448), Expect = 3e-47
 Identities = 80/509 (15%), Positives = 167/509 (32%), Gaps = 53/509 (10%)

Query: 85  QNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKG 144
           + L   N  +    + +  H  N   F    +    +  V++ N   +  L++A    KG
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 145 QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY------ 198
           ++P +IG L+ L+ +    +                      +++       ++      
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 199 -NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
            N+S L    I+ N     +  D+ ++L +        N +T  +  ++   T LQ +  
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDT-QIGNLTNRIT-FISKAIQRLTKLQIIYF 455

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
             + F+           N       EN   +            +N   L  ++L++    
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELS-----------WSNLKDLTDVELYNCPNM 504

Query: 318 GVLPFSLANLSITMTEIANGSNQISG---------TIPDVIANLVNLNALGVESNQLAG- 367
             LP  L +L   +  +    N+             + D       +    +  N L   
Sbjct: 505 TQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIG-NCQN 426
               ++ ++  L +L    N +      + G    LT L L+ N ++  IP         
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQ 620

Query: 427 LILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGH-----FPAEVGNLKNLVSL 479
           +  L    NKL   +P  + +  ++ V+  +D S N +           +     N  ++
Sbjct: 621 VEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT-------RSIPSTLSSLKSITELDLSRN 532
            +S N             + +  + + +N  T       +       +   +T +DL  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 533 NLSGHIPQ-YLENLSFLSFLNLSYNHFEG 560
            L+          L +LS +++SYN F  
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (383), Expect = 3e-40
 Identities = 112/487 (22%), Positives = 182/487 (37%), Gaps = 68/487 (13%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
            ++L ++  L         K +  + + +N+ +   SNN+L    P  + NL  L  + +
Sbjct: 42  QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 97

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
             N +       + NL+ L  + +  N++       + ++ NL    ++ N  S  I  +
Sbjct: 98  NNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD-ISAL 152

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
             ++SLQ +    N+     PL N   L  L    IS N ++      L+  TNL+ L  
Sbjct: 153 SGLTSLQQLSFG-NQVTDLKPLAN---LTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
             N  S         L NL  L+L  N L          I  L + T L  LDL +N+  
Sbjct: 207 TNNQISD--ITPLGILTNLDELSLNGNQLKD--------IGTLASLTNLTDLDLANNQIS 256

Query: 318 GVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL 376
            + P S L  L    TE+  G+NQIS   P  +A L  L  L +  NQL    P  I  L
Sbjct: 257 NLAPLSGLTKL----TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308

Query: 377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK 436
           K+L  L L  N +    P  + +LT L +L    N +      S+ N  N+  L+   N+
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG 496
           +S   P                           + NL  +  L ++   ++         
Sbjct: 365 ISDLTP---------------------------LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 497 CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 556
            +    +     +     P+T+S   S TE D++ N  S    +     S    +     
Sbjct: 398 VSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTT 454

Query: 557 HFEGKVP 563
            F G V 
Sbjct: 455 TFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (368), Expect = 3e-38
 Identities = 109/475 (22%), Positives = 182/475 (38%), Gaps = 68/475 (14%)

Query: 83  RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHL 142
            L + T+T +    +I    +  +  MK       +   +     +L  +  L      +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISS 202
           K      +  L+ L +I+   N+L    P  + ++  L+   +  NQ + + PL  N+++
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA-NLTN 113

Query: 203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF 262
           L  + +  N+     PL N   L NL    +S N ++     +LS  T+LQ L     + 
Sbjct: 114 LTGLTLFNNQITDIDPLKN---LTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVT 168

Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
                   + L  L RL++  N +          I++L   T LE L   +N+   + P 
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITPL 217

Query: 323 S-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQM 381
             L NL     E++   NQ+       +A+L NL  L + +NQ++   PL    L  L  
Sbjct: 218 GILTNL----DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTE 269

Query: 382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTV 441
           L L  N +    P  L  LT LT L L  N L+      I N +NL  LT   N +S   
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325

Query: 442 PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE 501
           P                           V +L  L  L   +N  S    ++L   T++ 
Sbjct: 326 P---------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 502 YLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 556
           +L    N  +   P  L++L  IT+L L+    +     Y  N+S  + +     
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 4e-28
 Identities = 86/430 (20%), Positives = 168/430 (39%), Gaps = 68/430 (15%)

Query: 77  EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136
            + NL +L ++ + NN  +   +T L++ +N+      NN++    P  + NL  L  L 
Sbjct: 85  PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
           ++ N +     +++  L++LQ++              ++++  L   +++ N+ S  I +
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD-ISV 194

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
           +  +++L+ +    N+     PL     L NL   S++GN L      +L++ TNL  L+
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA--------------NDLDFITLLTN 302
           +  N  S       S L  L+ L LG N +   +               N L+ I+ ++N
Sbjct: 250 LANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 307

Query: 303 CTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361
              L  L L+ N    + P S L  L      +   +N++S      +ANL N+N L   
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKL----QRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 362 SNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI 421
            NQ++   P  +  L  +  L LN+        +   N+++   +      L    P +I
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATI 417

Query: 422 GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI 481
            +  +                             D++ NL +             V++  
Sbjct: 418 SDGGSY-------------------------TEPDITWNLPSY-TNEVSYTFSQPVTIGK 451

Query: 482 SSNMFSGEIP 491
            +  FSG + 
Sbjct: 452 GTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (288), Expect = 2e-27
 Identities = 78/368 (21%), Positives = 146/368 (39%), Gaps = 35/368 (9%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
            NL  L  L L++N  S   ++ LS  +++ +    N   + +    + NL  L+ L+I+
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDIS 185

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY 198
            N +     + +  L+ L+ +    N++    P  +  + NL   ++  NQ    I  + 
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLA 240

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
           ++++L  + +  N+     PL     L  L    +  N ++      L+  T L  LE+N
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNI--SPLAGLTALTNLELN 295

Query: 259 GNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG 318
            N          S L+NL+ L L  NN+          I+ +++ TKL+ L  ++N+   
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNKVSD 345

Query: 319 VLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK 377
           V   + L N+      ++ G NQIS   P  +ANL  +  LG+         P+      
Sbjct: 346 VSSLANLTNI----NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANV 398

Query: 378 SLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKL 437
           S+     N        P+++ +    T+  +  N                + +       
Sbjct: 399 SIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

Query: 438 SGTVPRQL 445
           SGTV + L
Sbjct: 457 SGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 1e-22
 Identities = 71/321 (22%), Positives = 137/321 (42%), Gaps = 28/321 (8%)

Query: 77  EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136
            ++NL  L+ L +++N  S   ++ L+  +N+    A+NN++    P  +G L  L  L+
Sbjct: 172 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
           +  N LK     ++ +L+ L ++D+  N++    P  +S +  L    +  NQ S + PL
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 283

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
              +++L  + ++ N+     P+ N   L NL Y ++  NN++      +S+ T LQ L 
Sbjct: 284 A-GLTALTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDI--SPVSSLTKLQRLF 337

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
              N  S     + + L N++ L+ G N +          +T L N T++  L L+   +
Sbjct: 338 FYNNKVSD--VSSLANLTNINWLSAGHNQISD--------LTPLANLTRITQLGLNDQAW 387

Query: 317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL 376
                   AN+SI  T + N +  +    P  I++  +     +  N  +          
Sbjct: 388 TNAPVNYKANVSIPNT-VKNVTGAL--IAPATISDGGSYTEPDITWNLPSY-TNEVSYTF 443

Query: 377 KSLQMLFLNENFLRGTIPSSL 397
                +        GT+   L
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPL 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  145 bits (367), Expect = 2e-37
 Identities = 89/491 (18%), Positives = 168/491 (34%), Gaps = 20/491 (4%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
            +   LQ L L+               S++     + N +++        L  LQ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLG-GRIPSTISHVRNLISFNVARNQFSGMIP-L 196
           E +L       IG+L  L+E++V  N +   ++P   S++ NL   +++ N+   +    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 197 IYNISSLQYIFIHTNRFHGSLP-LDNGV-NLPNLRYFSISGNNLTGSL-QDSLSNATNLQ 253
           +  +  +  + +  +     +  +  G      L   ++  N  + ++ +  +     L+
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 254 GLEINGNLFSGK---VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310
              +    F  +      + S L+ L  L + E  L        D I L    T +    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 311 LHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP 370
           L S     V  FS       +  +     Q           L +L  L   SN+      
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFS 342

Query: 371 LAIGELKSLQMLFLNENFLR--GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
               +L SL+ L L+ N L   G    S    T L  L L  N +   +  +    + L 
Sbjct: 343 EV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG 488
            L  + + L       +   +   + LD+S       F      L +L  L ++ N F  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 489 EIPT-TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
                      +L +L +      +  P+  +SL S+  L+++ N L        + L+ 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 548 LSFLNLSYNHF 558
           L  + L  N +
Sbjct: 520 LQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (364), Expect = 4e-37
 Identities = 103/518 (19%), Positives = 194/518 (37%), Gaps = 34/518 (6%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
              LDL    +  + S    +    + ++L     +        +L  L  L LT N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 96  GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLK-GQLPASIGNLS 154
              L   S  S++ K  A    L +     IG+L  L+ LN+A N ++  +LP    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVARNQFSGMIPLIYNISSLQYIFIHT 210
            L+ +D+  N++     + +  +  +    +S +++ N  + + P  +    L  + +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 211 NRFHGSLPLDNGVNLPNLRYFSI------SGNNLTGSLQDSLSNATNLQGLEINGN---L 261
           N    ++       L  L    +      +  NL    + +L    NL   E        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
           +   +   F+ L N+S  +L    +       +   +       LE+++    +F  +  
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTI-----ERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 322 FSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA--GTIPLAIGELKSL 379
            SL  L+ T       SN+      +V  +L +L  L +  N L+  G    +     SL
Sbjct: 325 KSLKRLTFT-------SNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLS 438
           + L L+ N +  T+ S+   L  L  L  + +NL+     S+  + +NLI L        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 439 GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGC 497
                 + + ++   +L ++ N    +F  ++   L+NL  LD+S        PT     
Sbjct: 435 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535
           +SL+ L M  N            L S+ ++ L  N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 62/409 (15%), Positives = 115/409 (28%), Gaps = 44/409 (10%)

Query: 67  NKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSN----VMKFEASNNKLEAEI 122
           N     ++P   SNL  L++L L++N       TDL          +  + S N +   I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 123 PVEIGNLLMLQILNIAENHLKGQLPA-SIGNLSALQEID------VRGNRLGGRIPSTIS 175
                  + L  L +  N     +    I  L+ L+              L     S + 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 176 HVRNLI----SFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF 231
            + NL                +I L   ++++    + +                +L   
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA 291
           +                  +L+ L    N      + +   L +L  L+L  N L     
Sbjct: 313 NCKFGQFPTL------KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 292 NDLDFITL-------------------LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
                                           +LE LD   +    +  FS+      + 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI-PLAIGELKSLQMLFLNENFLRG 391
            +             +   L +L  L +  N       P    EL++L  L L++  L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT 440
             P++  +L+ L  L +  N L+           +L  +    N    +
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 44/234 (18%), Positives = 74/234 (31%), Gaps = 32/234 (13%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
            N +         +   L  L +   ++      A   L  L  L L  N ++     + 
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96

Query: 398 GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDL 457
             L+ L +L+    NL       IG+ + L                           L++
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLK-------------------------ELNV 131

Query: 458 SDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY----LGMQDNSFTR 512
           + NL+     P    NL NL  LD+SSN       T L     +      L +  N    
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSFLSFLNLSYNHFEGKVPIE 565
            I         + +L L  N  S ++ +  ++ L+ L    L    F  +  +E
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 50/308 (16%), Positives = 104/308 (33%), Gaps = 41/308 (13%)

Query: 67  NKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI 126
              +  +I    + L  + + +L +       + D S+       E  N K         
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG---QFPT 321

Query: 127 GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFN 184
             L  L+ L    N           +L +L+ +D+  N L   G    +     +L   +
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 185 VARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244
           ++ N    M      +  L+++    +           ++L NL Y  IS  +   +   
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 245 SLSNATNLQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
             +  ++L+ L++ GN F      + F+ L+NL+ L+L +  L   +           + 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------AFNSL 493

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
           + L+VL++ SN                         Q+      +   L +L  + + +N
Sbjct: 494 SSLQVLNMASN-------------------------QLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 364 QLAGTIPL 371
               + P 
Sbjct: 529 PWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 24/104 (23%), Positives = 36/104 (34%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           LDLS N L         +   L  LD+S               + L  L +  N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
               S L S+ +L     NL+      + +L  L  LN+++N  
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 15/85 (17%), Positives = 26/85 (30%)

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
           +  +LD+S N        +      L+ L +              SL  ++ L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 535 SGHIPQYLENLSFLSFLNLSYNHFE 559
                     LS L  L     +  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA 113

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (355), Expect = 2e-37
 Identities = 78/381 (20%), Positives = 143/381 (37%), Gaps = 41/381 (10%)

Query: 180 LISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
             +        + + P   +++      +        +  +    L ++    ++G  + 
Sbjct: 2   AATLATLPAPINQIFPDA-DLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKVA 57

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
                 +   TNL+ L +NGN  +       S L  L+ L +G N +          I+ 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--------ISA 105

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
           L N T L  L L+ +    + P + L  +      +  G+N    +    ++N+  LN L
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKM----YSLNLGANHNL-SDLSPLSNMTGLNYL 160

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            V  +++    P  I  L  L  L LN N +    P  L +LT L      VN +     
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--I 214

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNL 476
             + N   L  L    NK++   P     +  L  L  L++  N ++      V +L  L
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISD--INAVKDLTKL 267

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536
             L++ SN  S    + L   + L  L + +N         +  L ++T L LS+N+++ 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 537 HIPQYLENLSFLSFLNLSYNH 557
             P  L +LS +   + +   
Sbjct: 326 IRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 9e-37
 Identities = 85/405 (20%), Positives = 155/405 (38%), Gaps = 61/405 (15%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
              L      +    P    +L+      ++   +      T   + ++    VA  + +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
             I  I  +++L+Y+ ++ N+     PL N   L  L    I  N +T     +L N TN
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKITDI--SALQNLTN 111

Query: 252 LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDL 311
           L+ L +N +  S       + L  +  LNLG N+  +        ++ L+N T L  L +
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-------DLSPLSNMTGLNYLTV 162

Query: 312 HSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP 370
             ++   V P + L +L      ++   NQI    P  +A+L +L+      NQ+    P
Sbjct: 163 TESKVKDVTPIANLTDL----YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILL 430
           +    +  L  L +  N +    P  L NL+ LT L +  N +      ++ +   L +L
Sbjct: 217 V--ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490
                                    ++  N ++    + + NL  L SL +++N    E 
Sbjct: 271 -------------------------NVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 491 PTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535
              +GG T+L  L +  N  T   P  L+SL  +   D +   + 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (314), Expect = 1e-31
 Identities = 72/360 (20%), Positives = 149/360 (41%), Gaps = 34/360 (9%)

Query: 56  NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN 115
           +L+      L   S    +      L  +  L +     +   +  + + +N+     + 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N++    P  + NL+ L  L I  N +     +++ NL+ L+E+ +  + +     S ++
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLA 129

Query: 176 HVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
           ++  + S N+  N     +  + N++ L Y+ +  ++     P+    NL +L   S++ 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNY 186

Query: 236 NNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295
           N +       L++ T+L       N  +       + +  L+ L +G N +         
Sbjct: 187 NQIEDI--SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD------- 235

Query: 296 FITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVN 354
            ++ L N ++L  L++ +N+   +     L  L      +  GSNQIS     V+ NL  
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISDINAVKDLTKL----KMLNVGSNQISD--ISVLNNLSQ 288

Query: 355 LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           LN+L + +NQL       IG L +L  LFL++N +    P  L +L+ +         ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 4e-30
 Identities = 69/322 (21%), Positives = 126/322 (39%), Gaps = 37/322 (11%)

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
             ++        +     +    +    L+++++L +    + +        I  +   T
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--------IQGIEYLT 66

Query: 305 KLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
            LE L+L+ N+   + P S L  L    T +  G+N+I  T    + NL NL  L +  +
Sbjct: 67  NLEYLNLNGNQITDISPLSNLVKL----TNLYIGTNKI--TDISALQNLTNLRELYLNED 120

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN 423
            ++   PL    L  +  L L  N    +  S L N+T L  L +  + ++   P  I N
Sbjct: 121 NISDISPL--ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNLVSLDI 481
             +L  L+   N++       +  + +L  L       N +    P  V N+  L SL I
Sbjct: 176 LTDLYSLSLNYNQIED-----ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541
            +N  +   P  L   + L +L +  N  +    + +  L  +  L++  N +S      
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISV 282

Query: 542 LENLSFLSFLNLSYNHFEGKVP 563
           L NLS L+ L L+ N    +  
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDM 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 1e-23
 Identities = 60/288 (20%), Positives = 107/288 (37%), Gaps = 35/288 (12%)

Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEI 334
            + L      +          I    +  +     L       V+    L ++    T++
Sbjct: 2   AATLATLPAPINQ--------IFPDADLAEGIRAVLQKASVTDVVTQEELESI----TKL 49

Query: 335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP 394
                +++ +I   I  L NL  L +  NQ+    PL    L  L  L++  N +  T  
Sbjct: 50  VVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTNKI--TDI 103

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL 454
           S+L NLT L +L L  +N+       + N   +  L    N     +      +  +  L
Sbjct: 104 SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS----PLSNMTGL 157

Query: 455 --LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
             L ++++ +       + NL +L SL ++ N      P  L   TSL Y     N  T 
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
             P  ++++  +  L +  N ++   P  L NLS L++L +  N    
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.1 bits (222), Expect = 2e-19
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 18/234 (7%)

Query: 332 TEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG 391
             +A     I+   PD  A+L       ++   +   +     EL+S+  L +    +  
Sbjct: 3   ATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKV-- 56

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITL 451
                +  LT L  L L  N +    P  + N   L  L    NK+  T    L ++  L
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNL 112

Query: 452 PVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
              L L+++ ++    + + NL  + SL++ +N       + L   T L YL + ++   
Sbjct: 113 -RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
              P  +++L  +  L L+ N +    P  L +L+ L +     N      P+ 
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA 218

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 37/211 (17%), Positives = 75/211 (35%), Gaps = 38/211 (18%)

Query: 355 LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
              L      +    P A  +L       L +  +   +      L  +T+L++    + 
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 415 GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK 474
                 I    NL                           L+L+ N +    P  + NL 
Sbjct: 58  S--IQGIEYLTNL-------------------------EYLNLNGNQITDISP--LSNLV 88

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
            L +L I +N  +    + L   T+L  L + +++ +   P  L++L  +  L+L  N+ 
Sbjct: 89  KLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN 144

Query: 535 SGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
              +   L N++ L++L ++ +  +   PI 
Sbjct: 145 LSDLSP-LSNMTGLNYLTVTESKVKDVTPIA 174

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  136 bits (346), Expect = 3e-36
 Identities = 53/327 (16%), Positives = 110/327 (33%), Gaps = 27/327 (8%)

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
           GS      +++  + L   G+          S+ Q     +           N       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR----------NRWHSAWR 51

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIAN-GSNQISGTIPDVIANLVNLNAL 358
             N    ++               L + +          S  +    PD    L +L  +
Sbjct: 52  QANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +++  L   +P  + +   L+ L L  N LR  +P+S+ +L  L +L +       ++P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 419 PSIGNC---------QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAE 469
             + +           NL  L      +  ++P  + ++  L   L + ++ L+      
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPA 224

Query: 470 VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDL 529
           + +L  L  LD+         P   GG   L+ L ++D S   ++P  +  L  + +LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 530 SRNNLSGHIPQYLENLSFLSFLNLSYN 556
                   +P  +  L     + +  +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 7e-34
 Identities = 62/328 (18%), Positives = 106/328 (32%), Gaps = 26/328 (7%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283
           +          G+       D LS        + N    + +     +   N        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTG 65

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISG 343
             L        D +   T       L+L S       P     LS  +  +   +  +  
Sbjct: 66  RALKA----TADLLEDATQ-PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM- 117

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL- 402
            +PD +     L  L +  N L   +P +I  L  L+ L +        +P  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 403 --------LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL 454
                   L  L LE   ++  +P SI N QNL  L  R + LS  +   + H+  L   
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EE 233

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           LDL       ++P   G    L  L +        +P  +   T LE L ++       +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYL 542
           PS ++ L +   + +   +L   + Q+ 
Sbjct: 294 PSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 3e-28
 Identities = 53/400 (13%), Positives = 103/400 (25%), Gaps = 85/400 (21%)

Query: 125 EIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
              +    + L    +         +         D        R               
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA------------- 53

Query: 185 VARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD 244
                         N ++ Q           +  L      P      +    L     D
Sbjct: 54  --------------NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL---LT 301
                ++LQ + I+      ++     +   L  L L  N L            L   + 
Sbjct: 99  QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL----------RALPASIA 147

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361
           +  +L  L + +      LP  LA+                         LVNL +L +E
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTD----------------ASGEHQGLVNLQSLRLE 191

Query: 362 SNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI 421
              +  ++P +I  L++L+ L +  + L   +  ++ +L  L +L L         PP  
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 422 GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI 481
           G    L                           L L D       P ++  L  L  LD+
Sbjct: 250 GGRAPL-------------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSL 521
              +    +P+ +    +   + +  +   +       + 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 2e-26
 Identities = 60/411 (14%), Positives = 109/411 (26%), Gaps = 90/411 (21%)

Query: 48  GVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSN 107
           G       + S   ++     +        +S   R  N                ++ +N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNN 57

Query: 108 VMKFEASNNKLEAEIPVEIGNLLM--LQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
                 +   L+      + +        L +    L  Q P     LS LQ + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNL 225
           L   +P T+     L +  +ARN                           +LP     +L
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR------------------------ALPASIA-SL 149

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
             LR  SI        L + L++       +                L NL  L L    
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQ---------------GLVNLQSLRLEWTG 194

Query: 286 LGTGTANDLDFITL---LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
           +           +L   + N   L+ L + ++                            
Sbjct: 195 I----------RSLPASIANLQNLKSLKIRNSPLS------------------------- 219

Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL-NENFLRGTIPSSLGNLT 401
             +   I +L  L  L +         P   G    L+ L L + + L  T+P  +  LT
Sbjct: 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLT 277

Query: 402 LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
            L +L L       ++P  I       ++    +  +     + +     P
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAEP 328

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 2e-34
 Identities = 90/494 (18%), Positives = 166/494 (33%), Gaps = 36/494 (7%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTD-LSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
             L +LQ L L + Y    I  +   +  N+   +  ++K+    P     L  L  L +
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 138 AENHLKGQL--PASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMI 194
               L   +       NL AL  +D+  N++    +  +   + +L S + + NQ   + 
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164

Query: 195 PLIYN---ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
                     +L +  +  N  +  + +D G  +   R   +   +++G       N   
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWT 217

Query: 252 LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDL 311
           +       N  S   + +     ++     G +N+     N    +   +    +  LDL
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS----VRHLDL 273

Query: 312 HSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPL 371
                  +       L   +  +    N+I+    +    L NL  L +  N L      
Sbjct: 274 SHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 372 AIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT 431
               L  +  + L +N +      +   L  L  L L  N L      +I    ++  + 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIF 387

Query: 432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISSNMFSG-E 489
              NKL       L  I     L+ LS+N L        +  + +L  L ++ N FS   
Sbjct: 388 LSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 490 IPTTLGGCTSLEYLGMQDNSFTRSI-----PSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
              T     SLE L + +N    +            L  +  L L+ N L+   P    +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 545 LSFLSFLNLSYNHF 558
           L+ L  L+L+ N  
Sbjct: 503 LTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (330), Expect = 4e-32
 Identities = 72/440 (16%), Positives = 156/440 (35%), Gaps = 53/440 (12%)

Query: 128 NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI-PSTISHVRNLISFNVA 186
            L   + L ++ N+++    +S   L  LQ +++        I      ++ NL   ++ 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 187 RNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSL--QD 244
            ++                 F+H + F G         L +L    +    L+ ++    
Sbjct: 82  SSKIY---------------FLHPDAFQG---------LFHLFELRLYFCGLSDAVLKDG 117

Query: 245 SLSNATNLQGLEINGN-LFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
              N   L  L+++ N + S  +  +F +L +L  ++   N +     ++L+ +   T  
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-- 175

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
             L    L +N     +             +      +SG       N   ++  G  SN
Sbjct: 176 --LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSN 226

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL--LTQLILEVNNLQGKIPPSI 421
            ++ +   ++     +       + ++    ++   L    +  L L    +        
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 422 GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI 481
              ++L +L    NK++         +  L  +L+LS NLL   + +    L  +  +D+
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNL-QVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541
             N  +     T      L+ L ++DN+ T     T+  + SI ++ LS N L       
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----T 395

Query: 542 LENLSF-LSFLNLSYNHFEG 560
           L  ++   + ++LS N  E 
Sbjct: 396 LPKINLTANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 5e-29
 Identities = 68/400 (17%), Positives = 136/400 (34%), Gaps = 51/400 (12%)

Query: 169 RIPSTISHVRNL-ISFN----VARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGV 223
           ++P  ++    L +SFN    V  + F  +         LQ + + +     ++  +   
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTASSFPFL-------EQLQLLELGSQYTPLTIDKEAFR 70

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN--FSRLQNLSRLNL 281
           NLPNLR   +  + +     D+     +L  L +     S  V  +  F  L+ L+RL+L
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS-ITMTEIANGSNQ 340
            +N + +     L           L+ +D  SN+   V    L  L   T++  +  +N 
Sbjct: 131 SKNQIRS-----LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 341 ISGTIPDVIANLVN-LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN 399
           +   +       +N    + +E   ++G          ++ +     N +  +   SL  
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGN-------GWTVDITGNFSNAISKSQAFSLIL 238

Query: 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD 459
              +       +N++     +        +                         LDLS 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH-----------------------LDLSH 275

Query: 460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
             +          LK+L  L+++ N  +        G  +L+ L +  N       S   
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
            L  +  +DL +N+++    Q  + L  L  L+L  N   
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 3e-20
 Identities = 77/455 (16%), Positives = 161/455 (35%), Gaps = 53/455 (11%)

Query: 67  NKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCS--NVMKFEASNNKLEAEIPV 124
           N+     +      L  L+++  ++N        +L       +  F  + N L + + V
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 125 EIGNLLM------LQILNIAENHLKGQLPA------------SIGNLSALQEIDVRGNRL 166
           + G  +       L+IL+++ N     +              S+     +       + +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 167 GGRIPSTISHVR--NLISFNVARNQFSGMIPLIY-NISSLQYIFIHTNRFHGSLPLDNGV 223
                +T + +   ++   +++      +   ++  +  L+ + +  N+ +  +  +   
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFY 311

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283
            L NL+  ++S N L      +      +  +++  N  +      F  L+ L  L+L +
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISG 343
           N            +T +     +  + L  N+       +L  +++T   I    N++  
Sbjct: 372 NA-----------LTTIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLEN 415

Query: 344 -TIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSLQMLFLNENFLRGTIPSSL---- 397
             I   +  + +L  L +  N+ +         E  SL+ LFL EN L+    + L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 398 -GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD 456
              L+ L  L L  N L    P    +   L  L+   N+L+      L   +    +LD
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE---ILD 532

Query: 457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
           +S N L    P       +L  LDI+ N F  E  
Sbjct: 533 ISRNQLLAPNP---DVFVSLSVLDITHNKFICECE 564

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (337), Expect = 1e-33
 Identities = 86/464 (18%), Positives = 170/464 (36%), Gaps = 29/464 (6%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S NK+      ++     LQ+L +  + +      +  +L +L+ +D+  N L     S 
Sbjct: 34  SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93

Query: 174 ISHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF 231
              + +L   N+  N +  +    L  N+++LQ + I        +   +   L +L   
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA 291
            I   +L      SL +  ++  L ++ +  +  + I    L ++  L L + NL     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 292 NDLDFITLLTNCTKLEV--LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVI 349
           + L    + +   KL      L    F  +L      L ++  E  + +    G      
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 350 AN---------LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400
           ++          V +  L +    L   +      L+ ++ + +  + +     S   +L
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 401 TLLTQLILEVNNLQGKIPPS---IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--L 455
             L  L L  N +  +   +    G   +L  L   +N L  ++ +    ++TL  L  L
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSL 392

Query: 456 DLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP 515
           D+S N  +   P      + +  L++SS      + T      +LE L + +N+   S  
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFS 447

Query: 516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
             L  L    EL +SRN L   +P        L  + +S N  +
Sbjct: 448 LFLPRL---QELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 7e-23
 Identities = 50/343 (14%), Positives = 114/343 (33%), Gaps = 14/343 (4%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
              ++   +S N +T      L    NLQ L +  +  +      F  L +L  L+L +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344
           +L + +++           + L+ L+L  N +  +   SL      +  +  G+ +    
Sbjct: 85  HLSSLSSS------WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 345 IP-DVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLL 403
           I     A L +LN L +++  L      ++  ++ +  L L+ +     +      L+ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 404 TQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN 463
             L L   NL       +   +    +     + S         ++ L          + 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-------RYIL 251

Query: 464 GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKS 523
                E  +       D + +              ++  L +        + +  S L+ 
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 524 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEC 566
           +  + +  + +      + ++L  L FL+LS N    +     
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (251), Expect = 1e-22
 Identities = 70/463 (15%), Positives = 141/463 (30%), Gaps = 55/463 (11%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVE-IGNLLMLQILN 136
             L  L+ L L  N +    +T L  + +N+      N +  +EI       L  L  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
           I    L+     S+ ++  +  + +  +     +      + ++    +     +     
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
              +  +             L  ++   L  L  + +  + +         + T     +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGD 268

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            N +       +       + RL++ +  L        D  T+ +   K++ + +     
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFY------DLSTVYSLLEKVKRITVE---- 318

Query: 317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI---PLAI 373
                                ++++         +L +L  L +  N +           
Sbjct: 319 ---------------------NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 374 GELKSLQMLFLNENFLR--GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT 431
           G   SLQ L L++N LR        L  L  LT L +  N     +P S    + +  L 
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP 491
                +   V   +   +    +LD+S+N L+  F      L  L  L IS N     +P
Sbjct: 417 LSSTGIR-VVKTCIPQTLE---VLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP 467

Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
                   L  + +  N            L S+ ++ L  N  
Sbjct: 468 DA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 53/407 (13%), Positives = 120/407 (29%), Gaps = 53/407 (13%)

Query: 50  LSPFVGNLSFPRSINLPNKSFRGEIPHEV-SNLFRLQNLTLTNNYFSGKILTDLSHCSNV 108
           ++    NL+  +++ + N     EI     + L  L  L +            L    ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 109 MKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG- 167
                  ++    + +    L  ++ L + + +L     + +        +     R   
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 168 ------GRIPSTISHVRNLISFNVARNQFSGMIPLIYNIS------------SLQYIFIH 209
                   +   + ++  L          +G+     + S            +++ + I 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 210 TNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN 269
                  L       L  ++  ++  + +         +  +L+ L+++ NL   +   N
Sbjct: 295 QFYLFYDLS-TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 270 ---FSRLQNLSRLNLGENNLGTGTANDLDFITL-------------------LTNCTKLE 307
                   +L  L L +N+L +        +TL                        K+ 
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 308 VLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG 367
            L+L S     V       L      +   +N +          L  L  L +  N+L  
Sbjct: 414 FLNLSSTGIRVVKTCIPQTL----EVLDVSNNNLD----SFSLFLPRLQELYISRNKLK- 464

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           T+P        L ++ ++ N L+         LT L ++ L  N   
Sbjct: 465 TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
            D          P+ +     + SLD+S N  +      L  C +L+ L ++ +      
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
                SL S+  LDLS N+LS     +   LS L +LNL  N +
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 4e-29
 Identities = 66/333 (19%), Positives = 110/333 (33%), Gaps = 32/333 (9%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
              R   +  N +    QD  ++  +L+ LE+N N+ S      F+ L NL  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345
           L            + T  + L  LD+  N+   +L +   +L   +  +  G N +    
Sbjct: 92  LKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYIS 144

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
               + L +L  L +E   L      A+  L  L +L L    +      S   L  L  
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 406 LILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465
           L +        + P+     NL  L+     L+  VP   +                   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR------------------ 245

Query: 466 FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525
                 +L  L  L++S N  S    + L     L+ + +         P     L  + 
Sbjct: 246 ------HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
            L++S N L+        ++  L  L L  N  
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 2e-23
 Identities = 69/333 (20%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
            ++L++ +N +K        +   L+E+++  N +                  V    F+
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----------------AVEPGAFN 77

Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
            +        +L+ + + +NR    +PL     L NL    IS N +   L     +  N
Sbjct: 78  NL-------FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 252 LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDL 311
           L+ LE+  N         FS L +L +L L + NL +           L++   L VL L
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGLIVLRL 183

Query: 312 HSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPL 371
                  +  +S   L   +  +         T+       +NL +L +    L     L
Sbjct: 184 RHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 372 AIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILL 430
           A+  L  L+ L L+ N +     S L  L  L ++ L    L   + P        L +L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVL 301

Query: 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN 463
               N+L+ T+   + H +     L L  N L 
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 4e-20
 Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 11/240 (4%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
             +      +  G N+I     D  A+  +L  L +  N ++   P A   L +L+ L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPR 443
             N L+         L+ LT+L +  N +   +   +  +  NL  L    N L   +  
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 444 QLLHIITLPVL--LDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSL 500
           +      L  L  L L    L    P E   +L  L+ L +     +     +      L
Sbjct: 146 RAFS--GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 501 EYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFE 559
           + L +    +  ++        ++T L ++  NL+  +P   + +L +L FLNLSYN   
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 65/313 (20%), Positives = 114/313 (36%), Gaps = 33/313 (10%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNI 137
           ++   L+ L L  N  S       ++  N+      +N+L+  IP+ +   L  L  L+I
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
           +EN +   L     +L  L+ ++V  N L                  ++   FSG+    
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLV----------------YISHRAFSGL---- 151

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
              +SL+ + +       S+P +   +L  L    +   N+      S      L+ LEI
Sbjct: 152 ---NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
           +   +   ++ N     NL+ L++   NL             + +   L  L+L  N   
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL------AVRHLVYLRFLNLSYNPIS 261

Query: 318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK 377
            +    L  L   + EI     Q++   P     L  L  L V  NQL          + 
Sbjct: 262 TIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 378 SLQMLFLNENFLR 390
           +L+ L L+ N L 
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 31/194 (15%)

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427
            +P  I      ++L L +N ++        +   L +L L  N +   + P  G   NL
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEP--GAFNNL 79

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMF 486
             L T                      L L  N L    P  V   L NL  LDIS N  
Sbjct: 80  FNLRT----------------------LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116

Query: 487 SGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENL 545
              +        +L+ L + DN          S L S+ +L L + NL+  IP   L +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 546 SFLSFLNLSYNHFE 559
             L  L L + +  
Sbjct: 176 HGLIVLRLRHLNIN 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 5e-29
 Identities = 66/439 (15%), Positives = 125/439 (28%), Gaps = 55/439 (12%)

Query: 126 IGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
             N    +I  + ++ LK  L +   +   ++E+D+ GN L     + ++    L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 186 ARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
           + N     + L                           +L  LR   ++ N +       
Sbjct: 66  SSNVLYETLDL--------------------------ESLSTLRTLDLNNNYVQ-----E 94

Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
           L    +++ L    N  S    ++ SR Q    + L  N +      D          ++
Sbjct: 95  LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD------EGCRSR 145

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           ++ LDL  N    V    LA  S T+  +    N I   +   +     L  L + SN+L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

Query: 366 AGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ 425
           A  +         +  + L  N L   I  +L     L    L  N             +
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSK 260

Query: 426 NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDIS--- 482
           N  + T  K  +   +  Q     T+P L                  L  L   + +   
Sbjct: 261 NQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 483 -SNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541
                +  +            +      +   I       ++   L+  +  L       
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL-----DE 374

Query: 542 LENLSFLSFLNLSYNHFEG 560
             +    +   L     + 
Sbjct: 375 QVSNGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 7e-26
 Identities = 66/489 (13%), Positives = 136/489 (27%), Gaps = 73/489 (14%)

Query: 74  IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
           I     N  R +   +T++     + +      NV + + S N L      ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193
           +LN++ N L       + +LS L+ +D+  N +       +    ++ + + A N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                                  +    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 254 GLEINGNLFSG-KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLH 312
            L++  N       +   +    L  LNL  N +          +       KL+ LDL 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
           SN+                             +     +   +  + + +N+L   I  A
Sbjct: 200 SNKL--------------------------AFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 373 IGELKSLQMLFLNENFLR-GTIPSSLGNLTLLTQLILE-VNNLQGKIPPSIGNCQNLILL 430
           +   ++L+   L  N    GT+         +  +  + V  L G+              
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490
                 L      +L+ +      L             E  N      +D     +   I
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 491 PTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 550
                   +   L  +  +    + +   +   +             +    E  S L  
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQL 411

Query: 551 LNLSYNHFE 559
           L      +E
Sbjct: 412 LRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (252), Expect = 6e-23
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 30/323 (9%)

Query: 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLL 300
           ++ +   N    +  ++  +     ++       N+  L+L  N L   +A        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
              TKLE+L+L SN     L    L+ L      +   +N +       +    ++  L 
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTL----RTLDLNNNYVQ-----ELLVGPSIETLH 105

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG-KIP 418
             +N ++  +  +    +  + ++L  N +        G  + +  L L++N +      
Sbjct: 106 AANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNL 476
               +   L  L  + N +       +   +    L  LDLS N L      E  +   +
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-----DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536
             + + +N     I   L    +LE+  ++ N F           K+     +++  +  
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKK 274

Query: 537 HIPQYLENLSFLSFLNLSYNHFE 559
              Q  E  +  +  +      E
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 53/457 (11%), Positives = 135/457 (29%), Gaps = 30/457 (6%)

Query: 34  QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY 93
            R     +   S+   L+    +    + ++L           +++   +L+ L L++N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 94  FSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL 153
                  DL   S +   + +NN ++     E+     ++ L+ A N++  ++  S    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--G 119

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTN 211
              + I +  N++             +   ++  N+   +    L  +  +L+++ +  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 212 RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFS 271
             +    +   V    L+   +S N L   +     +A  +  + +  N     +     
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 272 RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITM 331
             QNL   +L  N    GT  D       +   +++ +   + +           +    
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 332 TEIANGSNQISGTIPDVIANL-VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390
              A     +     D +  L    +AL          +          + +   +   R
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIP---PSIGNCQNLILLTTRKNKLSGTVPRQLLH 447
             I            L  +   L  ++     +       +     + +L      Q   
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS-- 407

Query: 448 IITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
              L +L  +       +   +      +   D+  +
Sbjct: 408 --PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 7e-17
 Identities = 58/404 (14%), Positives = 116/404 (28%), Gaps = 15/404 (3%)

Query: 77  EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136
           E+     ++ L   NN  S       S          +NNK+     ++ G    +Q L+
Sbjct: 94  ELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 137 IAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP 195
           +  N +          +   L+ ++++ N +   +   +     L + +++ N+ + M P
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGP 208

Query: 196 LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL-TGSLQDSLSNATNLQG 254
              + + + +I +  N+    +         NL +F + GN    G+L+D  S    +Q 
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ- 265

Query: 255 LEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN 314
             +           N       +  + G        A   D +  L    +  +L    +
Sbjct: 266 -TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR-KEHALLSGQGS 323

Query: 315 RFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIG 374
               +             EI     Q    I  V         L  +   L   +     
Sbjct: 324 ETERLECERENQARQR--EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 375 ELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRK 434
               L          +  +  +    + L  L   V   +           N I      
Sbjct: 382 AHAELDGTLQQAV-GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440

Query: 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
                 +  +   +  L    DL+    N      V   +NL S
Sbjct: 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 20/71 (28%), Positives = 29/71 (40%)

Query: 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 549
           I          +   + D+S  +++ S   S  ++ ELDLS N LS      L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 550 FLNLSYNHFEG 560
            LNLS N    
Sbjct: 62  LLNLSSNVLYE 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 6e-29
 Identities = 91/498 (18%), Positives = 165/498 (33%), Gaps = 84/498 (16%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKI-----------LTDLSHC--SNVMKFEASNNKLE 119
           E+P E  N+          + +               ++ L  C      + E +N  L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 120 AEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P    +L   + L  + N L  +LP    +L +L   +     L    P        
Sbjct: 85  -SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------L 132

Query: 180 LISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
           L    V+ NQ    +P + N S L+ I +  N     LP       P+L + +   N L 
Sbjct: 133 LEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLE 186

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
             L   L N   L  +  + N     +        +L  +  G N L          +  
Sbjct: 187 -EL-PELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILEE--------LPE 232

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           L N   L  +   +N     LP    +L      +    N ++  +P++  +L  L+   
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSL----EALNVRDNYLT-DLPELPQSLTFLDVSE 286

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
              + L+   P       +L  L  + N +R ++     +L    +L +  N L  ++P 
Sbjct: 287 NIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPA 334

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
                + LI      N L+  VP    ++  L     +  N L   FP    ++++L   
Sbjct: 335 LPPRLERLIA---SFNHLA-EVPELPQNLKQL----HVEYNPLR-EFPDIPESVEDL--- 382

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
               N    E+P       +L+ L ++ N      P    S+    +L ++   +     
Sbjct: 383 --RMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYE 433

Query: 540 QYLENLSFLSFLNLSYNH 557
              E    L      ++H
Sbjct: 434 FAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 1e-26
 Identities = 89/475 (18%), Positives = 153/475 (32%), Gaps = 92/475 (19%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA-------------LQEID 160
            ++ L  E+PVE  N+        A +  +   P   G                   E++
Sbjct: 19  HSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLD 220
           +    L   +P    H+ +L     + N  + +  L  ++ SL     +           
Sbjct: 78  LNNLGL-SSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD----- 128

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLN 280
                P L Y  +S N L       L N++ L+ ++++ N     +        +L  + 
Sbjct: 129 ---LPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIA 179

Query: 281 LGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQ 340
            G N L          +  L N   L  +   +N     LP    +L      I  G+N 
Sbjct: 180 AGNNQLEE--------LPELQNLPFLTAIYADNNSL-KKLPDLPLSL----ESIVAGNNI 226

Query: 341 ISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400
           +       + NL  L  +  ++N L  T+P       SL+ L + +N+L   +P    +L
Sbjct: 227 L--EELPELQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLT-DLPELPQSL 279

Query: 401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN 460
           T L       + L    P       NL  L    N++  ++      +      L++S+N
Sbjct: 280 TFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEE----LNVSNN 327

Query: 461 LLNGHFPAEVGNLK-----------------NLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
            L    PA    L+                 NL  L +  N    E P        L   
Sbjct: 328 KLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM- 384

Query: 504 GMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
               NS    +P    +LK   +L +  N L    P   E++  L   +      
Sbjct: 385 ----NSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPESVEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 7e-21
 Identities = 83/477 (17%), Positives = 145/477 (30%), Gaps = 88/477 (18%)

Query: 50  LSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCS--- 106
           +     N+            +    P        +    L +         +L++     
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85

Query: 107 ------NVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPA------------ 148
                 ++    AS N L  E+P    +L  L + N     L    P             
Sbjct: 86  LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144

Query: 149 ---SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQY 205
               + N S L+ IDV  N L  ++P     +  +       NQ    +P + N+  L  
Sbjct: 145 KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLEE-LPELQNLPFLTA 199

Query: 206 IFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGK 265
           I+   N     LP        +L       N L       L N   L  +  + NL    
Sbjct: 200 IYADNNSLK-KLP----DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-- 250

Query: 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA 325
            ++      +L  LN+ +N L            L  + T L+V +   +     LP +L 
Sbjct: 251 -TLPDL-PPSLEALNVRDNYLTD-------LPELPQSLTFLDVSENIFSGLSE-LPPNLY 300

Query: 326 NLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLN 385
            L+ +       SN+I  ++ D+  +L  LN   V +N+L   +P        L+ L  +
Sbjct: 301 YLNAS-------SNEIR-SLCDLPPSLEELN---VSNNKLI-ELP---ALPPRLERLIAS 345

Query: 386 ENFLRGTIPSSLGNLTLL-------TQL--------ILEVNNLQGKIPPSIGNCQNLILL 430
            N L   +P    NL  L        +          L +N+   ++P    N + L + 
Sbjct: 346 FNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV- 403

Query: 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
               N L    P     +  L     ++   +   +         L       +   
Sbjct: 404 --ETNPLR-EFPDIPESVEDL----RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 42/214 (19%), Positives = 73/214 (34%), Gaps = 31/214 (14%)

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
           I         LQ    + + L   +P    N+   T+     +  +   PP  G  + + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 429 LLTTRKNKLSGTVPRQL--LHIITLPVL------LDLSDNLLNGHFPAEVGNLKNLVSLD 480
           +   R          +L  L + +LP L      L  S N L    P    +LK+L+  +
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 481 ISSNMFSGEIPT---------------TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525
            +    S   P                 L   + L+ + + +NS    +P    SL    
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSL---E 176

Query: 526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
            +    N L   +P+ L+NL FL+ +    N  +
Sbjct: 177 FIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (287), Expect = 8e-28
 Identities = 60/340 (17%), Positives = 119/340 (35%), Gaps = 32/340 (9%)

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLG 282
           + L N +  +   + +       L +   ++ L +N        +  F+    + +L +G
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
            N +     +      +  N   L VL L  N    +      N    +T ++  +N + 
Sbjct: 102 FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLE 154

Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
               D      +L  L + SN+L     + +  + SL    ++ N L     S+L     
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDN 460
           + +L    N++   +   +     L +L  + N L+         ++  P L  +DLS N
Sbjct: 207 VEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYN 258

Query: 461 LLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
            L           ++ L  L IS+N     +        +L+ L +  N     +     
Sbjct: 259 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
               +  L L  N++   +   L     L  L LS+N ++
Sbjct: 316 QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 9e-26
 Identities = 67/391 (17%), Positives = 132/391 (33%), Gaps = 52/391 (13%)

Query: 74  IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLML 132
           I   +       ++ +           +    +N       N+ +  ++P  +  +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
           ++LN+ +  ++     +      +Q++ +  N +    P    +V  L    + RN  S 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 193 MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNL 252
                                  SLP     N P L   S+S NNL     D+    T+L
Sbjct: 131 -----------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 253 QGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLH 312
           Q L+++ N  +    ++ S + +L   N+  N            ++ L     +E LD  
Sbjct: 168 QNLQLSSNRLT---HVDLSLIPSLFHANVSYNL-----------LSTLAIPIAVEELDAS 213

Query: 313 SNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
            N    V       L    T +    N +  T    + N   L  + +  N+L   +   
Sbjct: 214 HNSINVVRGPVNVEL----TILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 373 IGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT 432
             +++ L+ L+++ N L   +      +  L  L L  N+L   +  +      L  L  
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLN 463
             N +  T+     H +     L LS N  +
Sbjct: 326 DHNSIV-TLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (251), Expect = 4e-23
 Identities = 60/356 (16%), Positives = 125/356 (35%), Gaps = 29/356 (8%)

Query: 61  RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA 120
             +++  ++       E   L   + +T  N+         L     V     ++ ++E 
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 82

Query: 121 EIPVEI-GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           EI          +Q L +  N ++   P    N+  L  + +  N L         +   
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 180 LISFNVARNQFSGMIPLI-YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL 238
           L + +++ N    +        +SLQ + + +NR    + L     +P+L + ++S N L
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLL 198

Query: 239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT 298
           +     +L+    ++ L+ + N  +    +       L+ L L  NNL            
Sbjct: 199 S-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD--------TA 242

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
            L N   L  +DL  N    ++      +   +  +   +N++   +      +  L  L
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
            +  N L   +     +   L+ L+L+ N +  T+   L     L  L L  N+  
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 30/310 (9%)

Query: 267 SINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
            I+ +   +    ++  +          + ITL       +++   ++    +    L +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPAALLDS 67

Query: 327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386
               +  +     QI        A    +  L +  N +    P     +  L +L L  
Sbjct: 68  FR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQL 445
           N L         N   LT L +  NNL+ +I         +L  L    N+L+  V   L
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL 184

Query: 446 L-----------HIITLPVL-----LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489
           +            + TL +      LD S N +N      V     L  L +  N  + +
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-D 240

Query: 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 549
               L     L  + +  N   + +      ++ +  L +S N L   +  Y + +  L 
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 550 FLNLSYNHFE 559
            L+LS+NH  
Sbjct: 299 VLDLSHNHLL 308

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (278), Expect = 4e-26
 Identities = 89/487 (18%), Positives = 163/487 (33%), Gaps = 41/487 (8%)

Query: 84  LQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLK 143
              L ++ NY S    +D+   S +     S+N+++            L+ L+++ N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 144 GQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNISS 202
                S      L+ +D+  N      I     ++  L    ++         L     +
Sbjct: 83  K---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 203 LQYIFIHTN---RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEING 259
           +  + +                  N  +L     +       L  S+    NL+   I  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 260 NLFSGKVSINFSRLQNLSRLNLGEN---NLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            L   K S   S L  L       N   N    T N    I  L   T +    + + + 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 317 GGVLPFSLANLSIT----MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
            G L F   + S T    ++     S+        +     N+N      +       L 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 373 IGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT 432
             ++     L  + N L  T+  + G+LT L  LIL++N L+ ++         +  L  
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIP 491
                                 LD+S N ++           K+L+SL++SSN+ +  I 
Sbjct: 379 ----------------------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 492 TTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 551
             L     ++ L +  N    SIP  +  L+++ EL+++ N L        + L+ L  +
Sbjct: 417 RCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 552 NLSYNHF 558
            L  N +
Sbjct: 474 WLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 64/376 (17%), Positives = 129/376 (34%), Gaps = 17/376 (4%)

Query: 201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
           S L+ + I  NR    L +        L Y  +S N L            NL+ L+++ N
Sbjct: 45  SKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFN 100

Query: 261 LF-SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV 319
            F +  +   F  +  L  L L   +L   +   +  + +      L           G+
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSL 379
             F+  +L I           +  ++  V    ++     +E N+ +  + +      + 
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLS- 438
           ++  L  N +  T  S +  L L+    +   ++         + ++     T    LS 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 439 --------GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490
                   G     +  I +   + + + +            +   + LD S+N+ +  +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340

Query: 491 PTTLGGCTSLEYLGMQDNSFTR--SIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSF 547
               G  T LE L +Q N       I    + +KS+ +LD+S+N++S    +        
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 548 LSFLNLSYNHFEGKVP 563
           L  LN+S N     + 
Sbjct: 401 LLSLNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 57/356 (16%), Positives = 112/356 (31%), Gaps = 37/356 (10%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
                 +IS N ++      + + + L+ L I+ N         F   Q L  L+L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS----LANLSITMTEIANGSNQI 341
           L       +           L+ LDL  N F  +        ++ L      +   +  +
Sbjct: 81  LVK-----ISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQL----KFLGLSTTHL 127

Query: 342 SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLT 401
             +    IA+L     L V               L+      L+  F        + +++
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 402 LLTQLILEVNNLQG-----------KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT 450
           + T   LE++N++             I   +     L  LT    + +     ++L ++ 
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 451 LPVL--LDLSDNLLNGHFPAEVG-----NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
              +    +S+  L G            +LK L    + S++F           +++   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 504 GMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
               +          S +     LD S N L+  + +   +L+ L  L L  N  +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 58/377 (15%), Positives = 120/377 (31%), Gaps = 48/377 (12%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVE---IGNLLMLQIL 135
            N+ +L+ L L+  +     +  ++H +              +   E     N   L I+
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP 195
                     L  S+  ++ L+  +++      +    +S +  L +     N     I 
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 196 LIYNI----------SSLQYIFIHTNRFHGSLPLD------------------------- 220
             +N           +++ Y  I   +  G L                            
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 221 -NGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS 277
            + +     N+   + + +          S  +    L+ + NL +  V  N   L  L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANG 337
            L L  N L   +        +      L+ LD+  N           + + ++  +   
Sbjct: 352 TLILQMNQLKELSKIAEMTTQM----KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
           SN ++ TI   +     +  L + SN++  +IP  + +L++LQ L +  N L+       
Sbjct: 408 SNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464

Query: 398 GNLTLLTQLILEVNNLQ 414
             LT L ++ L  N   
Sbjct: 465 DRLTSLQKIWLHTNPWD 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (275), Expect = 1e-25
 Identities = 60/340 (17%), Positives = 119/340 (35%), Gaps = 32/340 (9%)

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLG 282
           + L N +  +   + +       L +   ++ L +N        +  F+    + +L +G
Sbjct: 48  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
            N +     +      +  N   L VL L  N    +      N    +T ++  +N + 
Sbjct: 108 FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLE 160

Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
               D      +L  L + SN+L     + +  + SL    ++ N L     S+L     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIA 212

Query: 403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDN 460
           + +L    N++   +   +     L +L  + N L+         ++  P L  +DLS N
Sbjct: 213 VEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-----DTAWLLNYPGLVEVDLSYN 264

Query: 461 LLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
            L           ++ L  L IS+N     +        +L+ L +  N     +     
Sbjct: 265 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
               +  L L  N++   +   L     L  L LS+N ++
Sbjct: 322 QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (264), Expect = 3e-24
 Identities = 78/502 (15%), Positives = 160/502 (31%), Gaps = 70/502 (13%)

Query: 65  LPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPV 124
            P +     I   +       ++ +           +    +N       N+ +  ++P 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 125 EI-GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISF 183
            +  +   +++LN+ +  ++     +      +Q++ +  N +    P    +V  L   
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 184 NVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ 243
            + RN  S                        SLP     N P L   S+S NNL     
Sbjct: 129 VLERNDLS------------------------SLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 244 DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
           D+    T+LQ L+++ N  +    ++ S + +L   N+  N L           + L   
Sbjct: 165 DTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL-----------STLAIP 210

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSI------TMTEIAN------------GSNQISGTI 345
             +E LD   N    V       L+I       +T+ A               N++   +
Sbjct: 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
                 +  L  L + +N+L   + L    + +L++L L+ N L   +  +      L  
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 406 LILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465
           L L+ N++   +         L  LT   N       R L   +  P + D   +    +
Sbjct: 329 LYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385

Query: 466 FPAE-------VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTL 518
                           + +   I+      ++    G C++ + +    +          
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 519 SSLKSITELDLSRNNLSGHIPQ 540
             L+   +L+   N L   + Q
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 3e-22
 Identities = 62/333 (18%), Positives = 108/333 (32%), Gaps = 22/333 (6%)

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286
             RY           +  +L        + I+              L N   +    + +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP 346
               A       LL +  ++E+L+L+  +   +  ++ A    T+ ++  G N I    P
Sbjct: 64  RKLPAA------LLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPP 116

Query: 347 DVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL 406
            V  N+  L  L +E N L+            L  L ++ N L      +    T L  L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 407 ILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHF 466
            L  N L   +        +L       N LS       +        LD S N +N   
Sbjct: 177 QLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEE------LDASHNSIN-VV 226

Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
              V     L  L +  N  + +    L     L  + +  N   + +      ++ +  
Sbjct: 227 RGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 527 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           L +S N L   +  Y + +  L  L+LS+NH  
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 3e-25
 Identities = 48/318 (15%), Positives = 98/318 (30%), Gaps = 46/318 (14%)

Query: 241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLL 300
           ++ +   N    +  ++  +     ++       N+  L+L  N L   +A        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGV 360
              TKLE+L+L SN     L                              +L  L  L +
Sbjct: 55  APFTKLELLNLSSNVLYETLDLE---------------------------SLSTLRTLDL 87

Query: 361 ESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
            +N +       +    S++ L    N +   +  S         + L  N +       
Sbjct: 88  NNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLD 139

Query: 421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLD 480
            G    +  L  + N++      +L         L+L  N +      +V     L +LD
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLD 197

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS-GHIP 539
           +SSN  +  +         + ++ +++N     I   L   +++   DL  N    G + 
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 540 QYLENLSFLSFLNLSYNH 557
            +      +  +      
Sbjct: 256 DFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 3e-24
 Identities = 60/337 (17%), Positives = 106/337 (31%), Gaps = 46/337 (13%)

Query: 126 IGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
             N    +I  + ++ LK  L +   +   ++E+D+ GN L     + ++    L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 186 ARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
           + N     + L                           +L  LR   ++ N +       
Sbjct: 66  SSNVLYETLDL--------------------------ESLSTLRTLDLNNNYVQ-----E 94

Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
           L    +++ L    N  S    ++ SR Q    + L  N +      D          ++
Sbjct: 95  LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLD------EGCRSR 145

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           ++ LDL  N    V    LA  S T+  +    N I   +   +     L  L + SN+L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL 203

Query: 366 AGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ 425
           A  +         +  + L  N L   I  +L     L    L  N             +
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSK 260

Query: 426 NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLL 462
           N  + T  K  +   +  Q     T+P L        
Sbjct: 261 NQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 5e-24
 Identities = 49/262 (18%), Positives = 90/262 (34%), Gaps = 17/262 (6%)

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
           +  N  + ++  +  +     L     +    + E+    N +S      +A    L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            + SN L     L +  L +L+ L LN N++       L     +  L    NN+  ++ 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS 115

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLV 477
            S G  Q    +    NK++            +   LDL  N ++  +F     +   L 
Sbjct: 116 CSRG--QGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGH 537
            L++  N    ++   +     L+ L +  N     +     S   +T + L  N L   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 538 IPQYLENLSFLSFLNLSYNHFE 559
           I + L     L   +L  N F 
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 50/341 (14%), Positives = 108/341 (31%), Gaps = 71/341 (20%)

Query: 74  IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
           I     N  R +   +T++     + +      NV + + S N L      ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193
           +LN++ N L       + +LS L+ +D+  N +       +    ++ + + A N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                                  +    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQ 147

Query: 254 GLEINGN-LFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLH 312
            L++  N + +   +   +    L  LNL  N +          +       KL+ LDL 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
           SN+             +               +     +   +  + + +N+L   I  A
Sbjct: 200 SNK-------------LA-------------FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 373 IGELKSLQMLFLNENFLR-GTIPSSLGNLTLLTQLILEVNN 412
           +   ++L+   L  N    GT+         +  +  +   
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT 404
           I ++  N        V  + L   +        +++ L L+ N L     + L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR----QLLH-----IITLPVL- 454
            L L  N L       + +   L  L    N +   +      + LH     I  +    
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSR 118

Query: 455 ------LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG-EIPTTLGGCTSLEYLGMQD 507
                 + L++N +      + G    +  LD+  N               +LE+L +Q 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           N     +         +  LDLS N L+  +    ++ + +++++L  N   
Sbjct: 179 NFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 6/184 (3%)

Query: 75  PHEVSNLFRLQNLTLTNNYFSG-KILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
             +     R+Q L L  N           +    +       N +  ++  ++     L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM 193
            L+++ N L   +     + + +  I +R N+L   I   +   +NL  F++  N F   
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
               +   + +   +        L   N                              L 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 254 GLEI 257
               
Sbjct: 312 HHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 5/157 (3%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
                 ++   L++L L  N+     +      + +   + S+NKL   +  E  +   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
             +++  N L   +  ++     L+  D+RGN             +N     VA+     
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 193 MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLR 229
           +        ++  +  +       LP      L  L 
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 7e-24
 Identities = 77/376 (20%), Positives = 131/376 (34%), Gaps = 54/376 (14%)

Query: 105 CSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164
            +         + L   +P  +   +    L I +N+L   LPA    L   + ++V GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHI--TTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 165 RLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVN 224
           +L   +P     +  L  F+           L    S L  ++I  N+   SLP    V 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTH------LPALPSGLCKLWIFGNQLT-SLP----VL 139

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
            P L+  S+S N L  SL    S    L  L    N  +   S+       L  L++ +N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT---SLPML-PSGLQELSVSDN 191

Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344
            L           +L T  ++L  L  ++NR    LP   + L     E+    N+++ +
Sbjct: 192 QL----------ASLPTLPSELYKLWAYNNRLT-SLPALPSGL----KELIVSGNRLT-S 235

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT 404
           +P + + L  L    V  N+L  ++P+       L  L +  N L   +P SL +L+  T
Sbjct: 236 LPVLPSELKELM---VSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG 464
            + LE N L      ++   + +         +                L   + + L  
Sbjct: 288 TVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 465 HFPAEVGNLKNLVSLD 480
               E           
Sbjct: 345 AREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (261), Expect = 9e-24
 Identities = 68/375 (18%), Positives = 128/375 (34%), Gaps = 76/375 (20%)

Query: 153 LSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNR 212
            +    ++V  + L   +P  +    ++ +  +  N  +                     
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--------------------- 74

Query: 213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSR 272
              SLP       P LR   +SGN LT SL         L                  + 
Sbjct: 75  ---SLP----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------AL 119

Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
              L +L +  N L           +L      L+ L +  N+    LP   + L     
Sbjct: 120 PSGLCKLWIFGNQL----------TSLPVLPPGLQELSVSDNQLA-SLPALPSEL----C 164

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
           ++   +NQ++ ++P + + L  L+   V  NQLA ++P    EL  L       N L  +
Sbjct: 165 KLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA-SLPTLPSELYKLWAY---NNRLT-S 215

Query: 393 IPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
           +P+    L    +LI+  N L   +P      + L++     N+L+ ++P     +++L 
Sbjct: 216 LPALPSGLK---ELIVSGNRLTS-LPVLPSELKELMV---SGNRLT-SLPMLPSGLLSL- 266

Query: 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
               +  N L    P  + +L +  ++++  N  S      L   TS          F  
Sbjct: 267 ---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 513 SIPSTLSSLKSITEL 527
           +  S     +++   
Sbjct: 323 AGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 3e-23
 Identities = 66/331 (19%), Positives = 116/331 (35%), Gaps = 49/331 (14%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
             ++    I  NNLT SL         L+ LE++GN  +  + +    L  LS  +    
Sbjct: 60  PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT 344
           +L            L +    L  L +  N+    LP     L     E++   NQ++ +
Sbjct: 115 HL----------PALPSG---LCKLWIFGNQLT-SLPVLPPGL----QELSVSDNQLA-S 155

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT 404
           +P + + L  L A     NQL  ++P+       LQ L +++N L  ++P+    L  L 
Sbjct: 156 LPALPSELCKLWAYN---NQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKLW 207

Query: 405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG 464
                 NN    +P      + LI+     N+L+ ++P     +  L     +S N L  
Sbjct: 208 AY----NNRLTSLPALPSGLKELIVS---GNRLT-SLPVLPSELKEL----MVSGNRLT- 254

Query: 465 HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSI 524
             P     L    SL +  N  +  +P +L   +S   + ++ N  +      L  + S 
Sbjct: 255 SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 525 TELDLSRNNLSGHIPQYLENLSFLSFLNLSY 555
                                  L      +
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 3e-23
 Identities = 75/333 (22%), Positives = 114/333 (34%), Gaps = 52/333 (15%)

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286
                ++  + LT +L D L    ++  L I  N  +   S+  +    L  L +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP 346
            +          L     +L +           LP  L  L I         NQ++ ++P
Sbjct: 94  TS-------LPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWI-------FGNQLT-SLP 137

Query: 347 DVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL 406
            +   L  L+   V  NQLA ++P    EL  L       N L  ++P     L    +L
Sbjct: 138 VLPPGLQELS---VSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQ---EL 186

Query: 407 ILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHF 466
            +  N L   +P        L     R   L    P  L         L +S N L    
Sbjct: 187 SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL-PSGLKE-------LIVSGNRLT-SL 236

Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITE 526
           P     LK L    +S N  +  +P    G  SL    +  N  T  +P +L  L S T 
Sbjct: 237 PVLPSELKEL---MVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETT 288

Query: 527 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           ++L  N LS    Q L  ++     +     F+
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 3e-22
 Identities = 62/310 (20%), Positives = 102/310 (32%), Gaps = 62/310 (20%)

Query: 267 SINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
            +        + LN+GE+ L T                 +  L +  N     LP     
Sbjct: 33  KMRACLNNGNAVLNVGESGLTTLPDCLP---------AHITTLVIPDNNL-TSLPALPPE 82

Query: 327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386
           L      +    NQ++ ++P +   L+ L+        L             L  L++  
Sbjct: 83  L----RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFG 130

Query: 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLL 446
           N L  ++P        L +L +  N L   +P        L       N+L+ ++P    
Sbjct: 131 NQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLWAY---NNQLT-SLPMLPS 181

Query: 447 HIITLPVLLDLSDNLLNGHFPAEVGNLK-----------------NLVSLDISSNMFSGE 489
            +      L +SDN L    P     L                   L  L +S N  +  
Sbjct: 182 GLQE----LSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-S 235

Query: 490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 549
           +P        L+ L +  N  T S+P   S L     L + RN L+  +P+ L +LS  +
Sbjct: 236 LPVLPS---ELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSET 287

Query: 550 FLNLSYNHFE 559
            +NL  N   
Sbjct: 288 TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 67/376 (17%), Positives = 107/376 (28%), Gaps = 98/376 (26%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
            +P     L  L   +                                 +P        L
Sbjct: 95  SLPVLPPGLLELSIFSNPLT----------------------------HLPALPSG---L 123

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
             L I  N L   LP        LQE+ V  N+L   +P+  S +  L       NQ + 
Sbjct: 124 CKLWIFGNQLT-SLPVLPPG---LQELSVSDNQL-ASLPALPSELCKL---WAYNNQLT- 174

Query: 193 MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNL 252
                                  SLP    +    L+  S+S N L  SL    S    L
Sbjct: 175 -----------------------SLP----MLPSGLQELSVSDNQLA-SLPTLPS---EL 203

Query: 253 QGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLH 312
             L    N  +   S+  +    L  L +  N L           +L    ++L+ L + 
Sbjct: 204 YKLWAYNNRLT---SLP-ALPSGLKELIVSGNRLT----------SLPVLPSELKELMVS 249

Query: 313 SNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
            NR    LP   + L      ++   NQ++  +P+ + +L +   + +E N L+     A
Sbjct: 250 GNRLTS-LPMLPSGL----LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 373 IGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI-------LEVNNLQGKIPPSIGNCQ 425
           + E+ S                S+      L            E            G   
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

Query: 426 NLILLTTRKNKLSGTV 441
           N    +   ++LS T 
Sbjct: 364 NADAFSLFLDRLSETE 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (255), Expect = 4e-23
 Identities = 63/332 (18%), Positives = 120/332 (36%), Gaps = 40/332 (12%)

Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVS-INFSRLQN 275
           LP++N  +L    ++    N ++G+  D  S     +   + G   +  VS +    +  
Sbjct: 5   LPINNNFSLSQNSFY----NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIA 335
            S L L   NL +   N            ++ VL++  N     LP   A+L      + 
Sbjct: 61  FSELQLNRLNLSSLPDNL---------PPQITVLEITQNALI-SLPELPASL----EYLD 106

Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS 395
              N++S T+P++ A+L +L+   V++NQL   +P        L+ +  + N L   +P 
Sbjct: 107 ACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE 157

Query: 396 SLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG--TVPRQLLHIITLPV 453
              +L     L +  N L   +P    + + L +     N L     VP +  H     +
Sbjct: 158 LPTSLE---VLSVRNNQLT-FLPELPESLEALDV---STNLLESLPAVPVRNHHSEETEI 210

Query: 454 LLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS 513
                +N +  H P  + +L    ++ +  N  S  I  +L   T+          F+ S
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545
                 +       D        +    +  +
Sbjct: 270 DGQQ--NTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 71/419 (16%), Positives = 140/419 (33%), Gaps = 48/419 (11%)

Query: 146 LPASIGNLSALQEIDVRGN--RLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL 203
           +   I N  +L +               S              RN+   ++     I+  
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQF 61

Query: 204 QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS 263
             + ++      SLP +     P +    I+ N L  SL +      +L+ L+   N  S
Sbjct: 62  SELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS 113

Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323
              ++      +L  L++  N L            L      LE ++  +N+   +LP  
Sbjct: 114 ---TLP-ELPASLKHLDVDNNQL----------TMLPELPALLEYINADNNQLT-MLPEL 158

Query: 324 LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQ--- 380
             +L      ++  +NQ++  +P++  +L  L+   V +N L  ++P         +   
Sbjct: 159 PTSL----EVLSVRNNQLT-FLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETE 209

Query: 381 -MLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439
                 EN +   IP ++ +L     +ILE N L  +I  S+            +   S 
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTS 499
           +  +Q      L    D        +  ++V  + +    +  +N FS      L    S
Sbjct: 269 SDGQQNTLHRPLA---DAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVS 324

Query: 500 LEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
                   + F   + + L  L +  EL      ++    +  E+   L++ NL     
Sbjct: 325 AR----NTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 31/227 (13%)

Query: 81  LFRLQNLTLTNNYFSGKILTDLSH--CSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
           + +   L L         L+ L       +   E + N L   +P    +   L+ L+  
Sbjct: 58  INQFSELQLNRLN-----LSSLPDNLPPQITVLEITQNALI-SLPELPAS---LEYLDAC 108

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY 198
           +N L   LP    +   L+ +DV  N+L   +P   + +  +   N   NQ + M+P   
Sbjct: 109 DNRLS-TLPELPAS---LKHLDVDNNQL-TMLPELPALLEYI---NADNNQLT-MLP--E 157

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
             +SL+ + +  N+    LP        +L    +S N L  SL        + +  EI 
Sbjct: 158 LPTSLEVLSVRNNQL-TFLP----ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 259 GNLFSGKVS---INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTN 302
                 +++    N   L     + L +N L +     L   T   +
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 81  LFRLQNLTLTNNYFSGKILTDLSHC-SNVMKFEASNNKLEAEIPVEIGNLLMLQ----IL 135
              L+ L++ NN      LT L     ++   + S N LE  +P         +      
Sbjct: 159 PTSLEVLSVRNNQ-----LTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP 195
              EN +   +P +I +L     I +  N L  RI  ++S       ++  R  FS    
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 196 LIYNISSLQYIFIHTN 211
               +       +   
Sbjct: 272 QQNTLHRPLADAVTAW 287

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 75/418 (17%), Positives = 131/418 (31%), Gaps = 57/418 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHVRNLISFNVARNQF 190
           +  ++++ N +      S   L  LQ + V     G  I + T   + +LI   +  NQF
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 191 SGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGNNLTG-SLQDS 245
              +       +++L+ + +          L       L +L    +  NN+        
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQ--NLSRLNLGENNLGTGTANDLDFIT--LLT 301
             N      L++  N        +    Q  + + L L    L       L +       
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 302 NCTKLEVLDLHSNRFGGVLPFS----LANLSITMTEIANGSNQISGTIPDVIANLVNLNA 357
             T +  LDL  N F   +       +A   I    ++N  N  S        +  N   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 358 LGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417
            G+E++               ++   L+++ +   + S   + T L QL L  N +  KI
Sbjct: 270 KGLEAS--------------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KI 314

Query: 418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNL 476
                    L  L                        L+LS N L G   + +  NL  L
Sbjct: 315 DD--NAFWGLTHLLK----------------------LNLSQNFL-GSIDSRMFENLDKL 349

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
             LD+S N        +  G  +L+ L +  N            L S+ ++ L  N  
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 61/378 (16%), Positives = 119/378 (31%), Gaps = 40/378 (10%)

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
            +  LQ++ +        +  +    L +L    +  N        + +   NL+ L + 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 259 GN-LFSGKVSIN-FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
              L    +S N F  L +L  L L +NN+       +   +   N  +  VLDL  N+ 
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----IQPASFFLNMRRFHVLDLTFNKV 166

Query: 317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL 376
             +    L N       +                 L ++    +    L         + 
Sbjct: 167 KSICEEDLLNFQGKHFTLLR---------------LSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ----------- 425
            S+  L L+ N  + ++     +    T++   + +    +  S G+             
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 426 ----NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLD 480
                +      K+K+   + + +    T    L L+ N +N          L +L+ L+
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           +S N               LE L +  N        +   L ++ EL L  N L      
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 541 YLENLSFLSFLNLSYNHF 558
             + L+ L  + L  N +
Sbjct: 390 IFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 53/379 (13%), Positives = 116/379 (30%), Gaps = 50/379 (13%)

Query: 84  LQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIAENHL 142
           +  + L+ N  +    T  S   ++   +         I       L  L IL +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 143 KGQLPASI-GNLSALQEIDVRGNRL-GGRIPSTI-SHVRNLISFNVARNQFSGMIP--LI 197
             QL       L+ L+ + +    L G  +       + +L    +  N    + P    
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 198 YNISSLQYIFIHTNRFHGSLPLD----------NGVNLPNLRYFSISGNNLTGSLQDSLS 247
            N+     + +  N+   S+  +            + L ++    ++   L      +  
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 248 NATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL--LTNCT- 304
             T++  L+++GN F   ++  F      +++     +      +           N T 
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 305 ------KLEVLDLHSNRFGGVLPFSLANLSIT---------MTEIANG------------ 337
                  ++  DL  ++   +L    ++ +           + +I +             
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 338 --SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS 395
              N +      +  NL  L  L +  N +      +   L +L+ L L+ N L+     
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 396 SLGNLTLLTQLILEVNNLQ 414
               LT L ++ L  N   
Sbjct: 390 IFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 22/224 (9%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-SLGNLTL 402
            +P++ A++  ++   +  N +A     +   L+ LQ L + +      I + +   L+ 
Sbjct: 24  QVPELPAHVNYVD---LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 403 LTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKL-SGTVPRQLLHIITLPVLLDLSDN 460
           L  L L+ N    ++         NL +LT  +  L    +       +T   +L L DN
Sbjct: 81  LIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 461 LLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
            +    PA    N++    LD++ N         L       +  +              
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-------------- 185

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
            L SIT  D++   L           + ++ L+LS N F+  + 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 70/406 (17%), Positives = 134/406 (33%), Gaps = 51/406 (12%)

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213
                       +      +   +  L S +   +  +  +  I  ++ L  +   +N  
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNI 76

Query: 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273
             +L L       NL Y +   N LT      ++  T L  L  + N  +    ++ S+ 
Sbjct: 77  T-TLDL---SQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMT 332
             L+ LN   N L      ++D    +++ T+L  LD H N+    L  +    L    T
Sbjct: 127 PLLTYLNCARNTL-----TEID----VSHNTQLTELDCHLNKKITKLDVTPQTQL----T 173

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
            +    N+I+  +   ++    LN L  ++N +     L + +   L  L  + N L   
Sbjct: 174 TLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-E 226

Query: 393 IPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
           I   +  LT LT     VN L  ++  S      L  L   +  L        + +    
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE------IDLTHNT 275

Query: 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
            L+             +V +   L  LD  +   + E+   L     L YL + +   T 
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT- 331

Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
            +   +S    +  L     ++       +  +  L+    +    
Sbjct: 332 ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 73/434 (16%), Positives = 146/434 (33%), Gaps = 60/434 (13%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
              L  L +L   N+  +   +T +   + + K   ++N +     +++     L  L  
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLAC 92

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
             N L       +  L+ L  ++   N+L       +S    L   N ARN  + +   +
Sbjct: 93  DSNKLTN---LDVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLTEID--V 144

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
            + + L  +  H N+    L +        L     S N +T   +  +S    L  L  
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNC 198

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
           + N  +    ++ ++   L+ L+   N L      ++D     T  T+L   D   N   
Sbjct: 199 DTNNIT---KLDLNQNIQLTFLDCSSNKL-----TEIDV----TPLTQLTYFDCSVNPLT 246

Query: 318 GVLPFSLANLS--------ITMTEIANGS-------NQISGTIPDVIANLVNLNALGVES 362
            +   +L+ L+        +   ++ + +                 + +   L  L  ++
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306

Query: 363 NQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIG 422
             +     L + +   L  L+LN   L   +   + + T L  L     ++Q     S+G
Sbjct: 307 AGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVG 358

Query: 423 NCQNLILLTTRKNKLS----GTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
               L      + +       T+    L I   P LLD   N +N       G + +  +
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQAT 416

Query: 479 LDISSNMFSGEIPT 492
             I+    S + P 
Sbjct: 417 NTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 71/428 (16%), Positives = 133/428 (31%), Gaps = 52/428 (12%)

Query: 128 NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAR 187
           N                    S   L+ L  +D   + +     + I  +  L       
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 188 NQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLS 247
           N  +  + L  N ++L Y+   +N+   +L +     L  L Y +   N LT   +  +S
Sbjct: 74  NNITT-LDLSQN-TNLTYLACDSNKLT-NLDVTP---LTKLTYLNCDTNKLT---KLDVS 124

Query: 248 NATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLE 307
               L  L    N  +    I+ S    L+ L+   N   T           +T  T+L 
Sbjct: 125 QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT--------KLDVTPQTQLT 173

Query: 308 VLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG 367
            LD   N+   +       L      +   +N I+  +   +   + L  L   SN+L  
Sbjct: 174 TLDCSFNKITELDVSQNKLL----NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT- 225

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427
            I   +  L  L     + N L   +  S   L+ LT L     +L       + +   L
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEI---DLTHNTQL 277

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
           I       +    +       + L   LD     +      ++     LV L +++   +
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYL---LDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
            E+   +   T L+ L   +        S +  + ++     +         + L N S 
Sbjct: 332 -ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386

Query: 548 LSFLNLSY 555
              ++   
Sbjct: 387 TIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 58/356 (16%), Positives = 121/356 (33%), Gaps = 46/356 (12%)

Query: 77  EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136
           ++S    L  L   +N  +     D++  + +       NKL     +++    +L  LN
Sbjct: 80  DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLN 133

Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
            A N L       + + + L E+D   N+        ++    L + + + N+ + +   
Sbjct: 134 CARNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITELD-- 186

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
           +     L  +   TN     L L+       L +   S N LT      ++  T L   +
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLDLN---QNIQLTFLDCSSNKLTEI---DVTPLTQLTYFD 239

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            + N  +    ++ S L  L+ L+  + +L      ++D    LT+ T+L        R 
Sbjct: 240 CSVNPLT---ELDVSTLSKLTTLHCIQTDL-----LEID----LTHNTQLIYFQAEGCRK 287

Query: 317 GGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGE 375
              L  +    L      +   +  I+  +   ++    L  L + + +L   +   +  
Sbjct: 288 IKELDVTHNTQL----YLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSH 337

Query: 376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT 431
              L+ L      +     SS+G +  L             +P       +L +  
Sbjct: 338 NTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL 408
           I  L  L  L   SN +     L + +  +L  L  + N L       +  LT LT L  
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC 113

Query: 409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPA 468
           + N L       +     L  L   +N L+       + +     L +L  +L       
Sbjct: 114 DTNKLTKL---DVSQNPLLTYLNCARNTLT------EIDVSHNTQLTELDCHLNKKITKL 164

Query: 469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELD 528
           +V     L +LD S N  +      +     L  L    N+ T  +   L+    +T LD
Sbjct: 165 DVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 529 LSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
            S N L+  I   +  L+ L++ + S N   
Sbjct: 219 CSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 64/261 (24%), Positives = 99/261 (37%), Gaps = 19/261 (7%)

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
             +LDL +N+   +      NL   +  +   +N+IS   P   A LV L  L +  NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 366 AGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSI-GN 423
                L     K+LQ L ++EN +     S    L  +  + L  N L+   I       
Sbjct: 113 KE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDIS 482
            + L  +      ++ T+P+ L   +T    L L  N +     A     L NL  L +S
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG------ 536
            N  S     +L     L  L + +N     +P  L+  K I  + L  NN+S       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 537 HIPQYLENLSFLSFLNLSYNH 557
             P Y    +  S ++L  N 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 55/317 (17%), Positives = 107/317 (33%), Gaps = 49/317 (15%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
            +   L++  N  +     +F  L+NL  L L  N +   +              KLE L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG------AFAPLVKLERL 105

Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
            L  N+   +       L     E+    N+I+     V   L  +  + + +N L  + 
Sbjct: 106 YLSKNQLKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 370 --PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427
               A   +K L  + + +  +  TIP  L     LT+L L+ N +  K+     + + L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDA--ASLKGL 215

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
             L                        L LS N ++      + N  +L  L +++N   
Sbjct: 216 NNLAK----------------------LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTR------SIPSTLSSLKSITELDLSRNNLSGH-IPQ 540
            ++P  L     ++ + + +N+ +         P   +   S + + L  N +    I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 541 YL-ENLSFLSFLNLSYN 556
                +   + + L   
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 55/317 (17%), Positives = 115/317 (36%), Gaps = 50/317 (15%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S+  L  ++P ++       +L++  N +         NL  L  + +  N++       
Sbjct: 39  SDLGL-EKVPKDLPPDT--ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------ 89

Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
                      ++   F+ +         L+ +++  N+    LP         L+   +
Sbjct: 90  ----------KISPGAFAPL-------VKLERLYLSKNQLK-ELPEKM---PKTLQELRV 128

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINGN-LFSGKVSIN-FSRLQNLSRLNLGENNLGTGTA 291
             N +T   +   +    +  +E+  N L S  +    F  ++ LS + + + N+ T   
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIAN 351
                         L  L L  N+   V   SL  L+  + ++    N IS      +AN
Sbjct: 189 GLP---------PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLAN 238

Query: 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG------TIPSSLGNLTLLTQ 405
             +L  L + +N+L   +P  + + K +Q+++L+ N +          P         + 
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 406 LILEVNNLQ-GKIPPSI 421
           + L  N +Q  +I PS 
Sbjct: 298 VSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 49/239 (20%), Positives = 91/239 (38%), Gaps = 9/239 (3%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
            NL  L  L L NN  S       +    + +   S N+L+ E+P ++     LQ L + 
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVH 129

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRI--PSTISHVRNLISFNVARNQFSGMIPL 196
           EN +     +    L+ +  +++  N L            ++ L    +A    + +   
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
           +    SL  + +  N+    +   +   L NL    +S N+++     SL+N  +L+ L 
Sbjct: 190 LP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
           +N N    KV    +  + +  + L  NN+    +ND       T       + L SN 
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 76/487 (15%), Positives = 176/487 (36%), Gaps = 43/487 (8%)

Query: 84  LQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNIAENHL 142
            + L+L+ N  S   + D+S  S +     S+N++ + +   +      L+ L+++ N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRL 112

Query: 143 KGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNIS 201
           +  +      +++L+ +D+  N      +     ++  L    ++  +F  +  L     
Sbjct: 113 QN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 202 SLQYIFIHTNRF---HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
            L  I +    +    G        N   L       +  +  +  S++   +LQ   I 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 259 GNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            N  + +  + F     +  + LN+   ++ T T      +        +E L++++   
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIET-TWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 317 GGVLPFSLANLSITMTEIA----NGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA 372
              +       S T  +        +     +   + +    +N   +  +       + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 373 IGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT 432
                S   L   +N    ++      L  L  LIL+ N L+          +N+  L T
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT 492
               L+                     +L +  +       ++++ L++SSNM +G +  
Sbjct: 408 LDVSLN---------------------SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 493 TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSFLSFL 551
            L     ++ L + +N    SIP  ++ L+++ EL+++ N L   +P    + L+ L ++
Sbjct: 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502

Query: 552 NLSYNHF 558
            L  N +
Sbjct: 503 WLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 56/359 (15%), Positives = 117/359 (32%), Gaps = 20/359 (5%)

Query: 201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
              + + +  N     L + +   L  LR   +S N +            +L+ L+++ N
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 261 LFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL 320
                 +I+   + +L  L+L  N+      + L       N TKL  L L + +F  + 
Sbjct: 111 RLQ---NISCCPMASLRHLDLSFNDF-----DVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 321 PFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQ 380
              +A+L ++   +   S  I G   + +    N   L +  +  +         + +L 
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 381 MLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT 440
            L L+   L       L            + N+  +   +   C   +        +   
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV--- 278

Query: 441 VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSL 500
              + L+I  L     +++ +    F      LK+L+   + + +F             +
Sbjct: 279 ---EYLNIYNL----TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 501 EYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
               +  +           S  S T L+ ++N  +  + Q    L  L  L L  N  +
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 12/238 (5%)

Query: 82  FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENH 141
             + NLT+T      +     +   ++M     N                + I  ++ + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 142 LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNIS 201
                     + S+   ++   N     +    S ++ L +  + RN       +     
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 202 SLQYIFIHTNRFHG--SLPLDNGVNLP-NLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
           ++  +       +   S   D       ++   ++S N LTGS+   L     ++ L+++
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458

Query: 259 GNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            N     +  + + LQ L  LN+  N L +      D        T L+ + LH N +
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFD------RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 53/347 (15%), Positives = 108/347 (31%), Gaps = 18/347 (5%)

Query: 76  HEVSNLFRLQNLTLTNNYFS--GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ 133
           H    L  L +  +            T + H         S     +   +    L  ++
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV--RNLISFNVARNQFS 191
           + +     L   L       + L                       R +   N+     +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 192 GMI---PLIYNISSLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGNNLTGSLQDSL 246
             I      Y+ ++L+ + I   +    L     +      +    +S ++         
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 247 SNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFIT-LLTNCTK 305
            + ++   L    N+F+  V    S L+ L  L L  N L          +  +  N + 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-----FFKVALMTKNMSS 404

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           LE LD+  N             + ++  +   SN ++G++   +     +  L + +N++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462

Query: 366 AGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
             +IP  +  L++LQ L +  N L+         LT L  + L  N 
Sbjct: 463 M-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 59/266 (22%), Positives = 96/266 (36%), Gaps = 20/266 (7%)

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
           +   +         V P     +      +    N I     D   +L +L  L +  N 
Sbjct: 55  QFSKVVCTRRGLSEV-P---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GN 423
           +      A   L SL  L L +N+L      +   L+ L +L L  N ++  IP      
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR 169

Query: 424 CQNLILLT-TRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNLVSLD 480
             +L+ L      KL   +         L  L  L+L    +       +  L  L  L+
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFE--GLFNLKYLNLGMCNI--KDMPNLTPLVGLEELE 224

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           +S N F    P +  G +SL+ L + ++  +    +    L S+ EL+L+ NNLS     
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 541 YLENLSFLSFLNLSYNHFEGKVPIEC 566
               L +L  L+L +N      P  C
Sbjct: 285 LFTPLRYLVELHLHHN------PWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 14/235 (5%)

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNRF 213
            + +++  N +      T  H+ +L    + RN     I       ++SL  + +  N  
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL 135

Query: 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSR 272
              +P      L  LR   +  N +      + +   +L  L++        +S   F  
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 273 LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMT 332
           L NL  LNLG  N+          +  LT    LE L++  N F  + P S   LS ++ 
Sbjct: 195 LFNLKYLNLGMCNIKD--------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLK 245

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN 387
           ++   ++Q+S    +    L +L  L +  N L+         L+ L  L L+ N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 18/259 (6%)

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
              +    +    E+P  + +    + L L  N           H  ++   +   N + 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI- 111

Query: 120 AEIPVEI-GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHV 177
            +I V     L  L  L + +N L      +   LS L+E+ +R N +   IPS   + V
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV 170

Query: 178 RNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
            +L+  ++   +    I       + +L+Y+ +          + N   L  L    +SG
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSG 227

Query: 236 NNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295
           N+       S    ++L+ L +  +  S      F  L +L  LNL  NNL +   +   
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD--- 284

Query: 296 FITLLTNCTKLEVLDLHSN 314
              L T    L  L LH N
Sbjct: 285 ---LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 5/210 (2%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNI 137
            +L  L+ L L  N      +   +  +++   E  +N L   IP      L  L+ L +
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWL 154

Query: 138 AENHLKGQLPASIGNLSALQEIDV-RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
             N ++     +   + +L  +D+    +L          + NL   N+        +P 
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
           +  +  L+ + +  N F   +   +   L +L+   +  + ++   +++     +L  L 
Sbjct: 214 LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNL 286
           +  N  S      F+ L+ L  L+L  N  
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 8e-19
 Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 16/246 (6%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
             +S     +    NQI     +   +L +L  L +  N +      A   L +L  L L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLT-TRKNKLSGTVP 442
            +N L      +   L+ L +L L  N ++  IP        +L  L      +LS  + 
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 443 RQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSL 500
                   L  L  L+L+   L    P  +  L  L  LD+S N  S   P +  G   L
Sbjct: 178 EGAFE--GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 501 EYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
           + L M  +       +   +L+S+ E++L+ NNL+         L  L  ++L +N    
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN---- 289

Query: 561 KVPIEC 566
             P  C
Sbjct: 290 --PWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 34/257 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
            ++LN+ EN ++     S  +L  L+ + +  N +                  +    F+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR----------------TIEIGAFN 109

Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
           G+       ++L  + +  NR   ++P    V L  L+   +  N +      + +   +
Sbjct: 110 GL-------ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 252 LQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310
           L+ L++        +S   F  L NL  LNL   NL          I  LT   KL+ LD
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--------REIPNLTPLIKLDELD 213

Query: 311 LHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP 370
           L  N    + P S   L   + ++    +QI     +   NL +L  + +  N L     
Sbjct: 214 LSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 371 LAIGELKSLQMLFLNEN 387
                L  L+ + L+ N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 18/259 (6%)

Query: 60  PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLE 119
              +    K+ R E+P  +S     + L L  N      +    H  ++   + S N + 
Sbjct: 45  FSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI- 100

Query: 120 AEIPVEI-GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHV 177
             I +     L  L  L + +N L      +   LS L+E+ +R N +   IPS   + +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 178 RNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG 235
            +L   ++   +    I       +S+L+Y+ +          + N   L  L    +SG
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSG 216

Query: 236 NNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD 295
           N+L+     S     +LQ L +  +         F  LQ+L  +NL  NNL     +   
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD--- 273

Query: 296 FITLLTNCTKLEVLDLHSN 314
              L T    LE + LH N
Sbjct: 274 ---LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 5/210 (2%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNI 137
            +L  L+ L L+ N+     +   +  +N+   E  +N+L   IP      L  L+ L +
Sbjct: 85  KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143

Query: 138 AENHLKGQLPASIGNLSALQEIDV-RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
             N ++     +   + +L+ +D+    RL          + NL   N+A       IP 
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
           +  +  L  + +  N    ++   +   L +L+   +  + +    +++  N  +L  + 
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNL 286
           +  N  +      F+ L +L R++L  N  
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 13/225 (5%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
           +N IS    D    L +L AL + +N+++     A   L+ LQ L++++N L   IP +L
Sbjct: 63  NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL 121

Query: 398 GNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKL-SGTVPRQLLHIITLPVLL 455
              + L +L +  N ++ K+P  +    +N+  +    N L +          + L   L
Sbjct: 122 --PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL-NYL 177

Query: 456 DLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYLGMQDNSFTRSI 514
            +S+  L    P      + L  L +  N     I    L   + L  LG+  N      
Sbjct: 178 RISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIE 233

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
             +LS L ++ EL L  N LS  +P  L +L  L  + L  N+  
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 59/340 (17%), Positives = 108/340 (31%), Gaps = 53/340 (15%)

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL 286
           +LR    S   L  ++   +S   +   L++  N  S     +F  LQ+L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP 346
                         +   KL+ L +  N    + P   ++L     E+    N+I     
Sbjct: 91  SKIHEK------AFSPLRKLQKLYISKNHLVEIPPNLPSSL----VELRIHDNRIRKVPK 140

Query: 347 DVIANLVNLNALGVESNQLAGT-IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
            V + L N+N + +  N L  +       +   L  L ++E  L   IP  L     L +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNE 197

Query: 406 LILEVNNLQGKIPP-SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG 464
           L L+ N +Q  I    +     L  L    N++                   + +  L+ 
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-----------------MIENGSLS- 238

Query: 465 HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR------SIPSTL 518
                   L  L  L + +N  S  +P  L     L+ + +  N+ T+            
Sbjct: 239 -------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 519 SSLKSITELDLSRNNLS-GHIPQYL-ENLSFLSFLNLSYN 556
                   + L  N +    +       ++    +     
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 62/333 (18%), Positives = 116/333 (34%), Gaps = 52/333 (15%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S+  L   +P EI       +L++  N +          L  L  + +  N++       
Sbjct: 41  SDLGL-KAVPKEISPDT--TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97

Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
            S +R L    +++N    + P +   SSL  + IH NR    +P      L N+    +
Sbjct: 98  FSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEM 154

Query: 234 SGNNLT-GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAN 292
            GN L     +    +   L  L I+    +    I     + L+ L+L  N +      
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQAIELE 211

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL 352
           DL         +KL  L L  N                         QI       ++ L
Sbjct: 212 DL------LRYSKLYRLGLGHN-------------------------QIRMIENGSLSFL 240

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-------LGNLTLLTQ 405
             L  L +++N+L+  +P  + +LK LQ+++L+ N +   +  +                
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNG 298

Query: 406 LILEVNNLQ-GKIPPSIGNC-QNLILLTTRKNK 436
           + L  N +   ++ P+   C  + + +     K
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 48/238 (20%), Positives = 83/238 (34%), Gaps = 8/238 (3%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
             L  L  L L NN  S       S    + K   S N L  EIP  +     L  L I 
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIH 131

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLG-GRIPSTISHVRNLISFNVARNQFSGMIPLI 197
           +N ++         L  +  I++ GN L              L    ++  + +G+   +
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
               +L  + +  N+   ++ L++ +    L    +  N +      SLS    L+ L +
Sbjct: 192 P--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
           + N  S +V      L+ L  + L  NN+     ND   +           + L +N 
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 8/220 (3%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFL--RGTIPSSLGNLT 401
           ++P  I    +   L +ESN+L         +L  L  L L+ N L  +G    S    T
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 402 LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461
            L  L L  N +   +  +    + L  L  + + L       +   +   + LD+S   
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 462 LNGHFPAEV-GNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
                   +   L +L  L ++ N F     P       +L +L +      +  P+  +
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
           SL S+  L++S NN         + L+ L  L+ S NH  
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 38/266 (14%)

Query: 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR--FGGVLPFSLANLSITMT 332
           + +RL L  N L +      D        T+L  L L SN   F G    S    + ++ 
Sbjct: 29  SATRLELESNKLQSLPHGVFD------KLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLK 81

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPL-AIGELKSLQMLFLNENFLRG 391
            +    N +  T+      L  L  L  + + L           L++L  L ++    R 
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITL 451
                   L+ L  L +  N+ Q    P       L  LT                    
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTF------------------- 179

Query: 452 PVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
              LDLS   L          +L +L  L++S N F            SL+ L    N  
Sbjct: 180 ---LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 511 TRSIPSTLSSL-KSITELDLSRNNLS 535
             S    L     S+  L+L++N+ +
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 46/263 (17%), Positives = 90/263 (34%), Gaps = 16/263 (6%)

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI-YNISSLQYIFIHTNRF-H 214
            EI      L   +P+ I    +     +  N+   +   +   ++ L  + + +N    
Sbjct: 10  TEIRCNSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRL 273
                 +     +L+Y  +S N +  ++  +      L+ L+   +        + F  L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF-GGVLPFSLANLSITMT 332
           +NL  L++   +             +    + LEVL +  N F    LP     L   +T
Sbjct: 126 RNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLT 178

Query: 333 EIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT 392
            +     Q+    P    +L +L  L +  N            L SLQ+L  + N +  +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 393 IPSSLGNL-TLLTQLILEVNNLQ 414
               L +  + L  L L  N+  
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 43/260 (16%), Positives = 79/260 (30%), Gaps = 35/260 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR--IPSTISHVRNLISFNVARNQ 189
              L +  N L+         L+ L ++ +  N L  +     +     +L   +++ N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 190 FSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
              M      +  L+++    +           ++L NL Y  IS  +            
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------- 139

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
                      +F+G        L +L  L +  N+       D     + T    L  L
Sbjct: 140 ------VAFNGIFNG--------LSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFL 180

Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
           DL   +   + P +  +LS ++  +    N            L +L  L    N +  T 
Sbjct: 181 DLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 370 PLAI--GELKSLQMLFLNEN 387
                     SL  L L +N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 30/240 (12%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
             L +L  L+L++N  S K     S                            L+ L+++
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQS----------------------DFGTTSLKYLDLS 86

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSGMIPLI 197
            N +   + ++   L  L+ +D + + L      S    +RNLI  +++          I
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 198 -YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
              +SSL+ + +  N F  +   D    L NL +  +S   L      + ++ ++LQ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
           ++ N F    +  +  L +L  L+   N++ T      +     ++   L  L+L  N F
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSS---LAFLNLTQNDF 260

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 51/208 (24%), Positives = 77/208 (37%), Gaps = 8/208 (3%)

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
                + +  N+++     +    ++L +L+L+ N L     ++   L LL QL L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 413 LQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAE 469
               + P+       L  L   +  L   +   L     L  L  L L DN L    P +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR--GLAALQYLYLQDNALQ-ALPDD 147

Query: 470 V-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELD 528
              +L NL  L +  N  S        G  SL+ L +  N      P     L  +  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 529 LSRNNLSGHIPQYLENLSFLSFLNLSYN 556
           L  NNLS    + L  L  L +L L+ N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 38/238 (15%)

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF 213
           +A Q I + GNR+     ++    RNL    +  N  +                I    F
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---------------RIDAAAF 76

Query: 214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQ-DSLSNATNLQGLEINGNLFSGKVSIN--- 269
            G         L  L    +S N    S+   +      L  L ++         +    
Sbjct: 77  TG---------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGL 124

Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
           F  L  L  L L +N L     +         +   L  L LH NR   V   +   L  
Sbjct: 125 FRGLAALQYLYLQDNALQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGLH- 177

Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN 387
           ++  +    N+++   P    +L  L  L + +N L+     A+  L++LQ L LN+N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 57/238 (23%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI-GNLLMLQILNI 137
                L  L L +N  +                          I       L +L+ L++
Sbjct: 53  RACRNLTILWLHSNVLA-------------------------RIDAAAFTGLALLEQLDL 87

Query: 138 AENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
           ++N     +  +    L  L  + +    L                  +    F G+   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGL----------------QELGPGLFRGL--- 128

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
               ++LQY+++  N    +LP D   +L NL +  + GN ++   + +     +L  L 
Sbjct: 129 ----AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN 314
           ++ N  +      F  L  L  L L  NNL             L     L+ L L+ N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDN 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 55/287 (19%), Positives = 104/287 (36%), Gaps = 29/287 (10%)

Query: 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334
            +  L+L  N +   + +DL        C  L+ L L SN    +   S ++L  ++  +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQ------RCVNLQALVLTSNGINTIEEDSFSSLG-SLEHL 105

Query: 335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSLQMLFLNENFLRGTI 393
               N +S         L +L  L +  N        ++   L  LQ+L +        I
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 394 PS-SLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP 452
                  LT L +L ++ ++LQ   P S+ + QN+  L     +    +    + + +  
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR 512
             L+L D  L+                    +  S     +L    +   + + D S   
Sbjct: 225 ECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHF 558
            +   L+ +  + EL+ SRN L   +P    + L+ L  + L  N +
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 30/278 (10%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           SNN++      ++   + LQ L +  N +      S  +L +L+ +D+  N L     S 
Sbjct: 60  SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119

Query: 174 ISHVRNLISFNVARNQFSGMIPLI--YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF 231
              + +L   N+  N +  +       +++ LQ + +        +   +   L  L   
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA 291
            I  ++L      SL +  N+  L ++       + I      ++  L L + +L T   
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 292 NDLDFIT--LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVI 349
           ++L       L        + +                                 +  ++
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESL--------------------------FQVMKLL 273

Query: 350 ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNEN 387
             +  L  L    NQL          L SLQ ++L+ N
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 41/286 (14%), Positives = 95/286 (33%), Gaps = 28/286 (9%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
           ++ L+++ N +     + +     LQ + +  N +      + S + +L   +++ N  S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 192 GMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD-SLSN 248
             +       +SSL ++ +  N +          +L  L+   +   +    +Q    + 
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 249 ATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEV 308
            T L+ LEI+ +        +   +QN+S L L            +D        + +E 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD------VTSSVEC 226

Query: 309 LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
           L+L                           +++S    + +        + +    L   
Sbjct: 227 LELRDTDLDT-----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-Q 268

Query: 369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           +   + ++  L  L  + N L+         LT L ++ L  N   
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 35/259 (13%)

Query: 303 CTKLEVLDLHSNRFGGV---LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           C +  +    S     +   L  ++ +L +        +N+I+      +   VNL AL 
Sbjct: 30  CDRNGICKGSSGSLNSIPSGLTEAVKSLDL-------SNNRITYISNSDLQRCVNLQALV 82

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           + SN +      +   L SL+ L L+ N+L     S    L+ LT L L  N  +     
Sbjct: 83  LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142

Query: 420 SI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
           S+  +   L +L          + R+                            L  L  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFA------------------------GLTFLEE 178

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           L+I ++      P +L    ++ +L +        +   +    S+  L+L   +L    
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 539 PQYLENLSFLSFLNLSYNH 557
              L      S +      
Sbjct: 239 FSELSTGETNSLIKKFTFR 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 47/308 (15%), Positives = 94/308 (30%), Gaps = 52/308 (16%)

Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
                      +     +   ++  + L ++ ++    +++ +        +  +     
Sbjct: 17  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--------VQGIQYLPN 66

Query: 306 LEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
           +  L L+ N+   + P + L NL      +    N+I       + +L  L +L +E N 
Sbjct: 67  VTKLFLNGNKLTDIKPLTNLKNL----GWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG 120

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424
           ++    L    L  L+ L+L  N +  T  + L  LT L  L LE N +       I   
Sbjct: 121 ISDINGLV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-----DIVPL 171

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
             L  L                        L LS N ++      +  LKNL  L++ S 
Sbjct: 172 AGLTKLQN----------------------LYLSKNHISD--LRALAGLKNLDVLELFSQ 207

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
               +             +   D S     P  +S      + ++  +            
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

Query: 545 LSFLSFLN 552
              ++   
Sbjct: 266 YQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 35/226 (15%), Positives = 81/226 (35%), Gaps = 14/226 (6%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
           +  L  +  L L  N  +   +  L++  N+       NK++ ++   + +L  L+ L++
Sbjct: 61  IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
             N +   +   + +L  L+ + +  N++     + +S +  L + ++  NQ S  I  +
Sbjct: 117 EHNGIS-DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-IVPL 171

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
             ++ LQ +++  N       L     L NL    +          +  SN      ++ 
Sbjct: 172 AGLTKLQNLYLSKNHISDLRALAG---LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
                     I  S   +  + N+  +           F   +T  
Sbjct: 229 TDGSLVTPEII--SDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 28/263 (10%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE 283
           +L  +   S  G  +T    + +    NL GLE+  N  +  ++     L  ++ L L  
Sbjct: 39  DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSG 94

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQIS 342
           N L          ++ +     ++ LDL S +   V P + L+NL      +    NQI+
Sbjct: 95  NPLKN--------VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL----QVLYLDLNQIT 142

Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
              P  +A L NL  L + + Q++   PLA   L  L  L  ++N +  +  S L +L  
Sbjct: 143 NISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKI--SDISPLASLPN 196

Query: 403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLL 462
           L ++ L+ N +    P  + N  NL ++T     ++        +++   V+   S   +
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

Query: 463 NGHFPAEVGNLKNLVSLDISSNM 485
               PA + +     S +++ N+
Sbjct: 255 A---PATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 63/314 (20%), Positives = 114/314 (36%), Gaps = 56/314 (17%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI-NFSRLQNLSRLNLG 282
            L N    +   +N+T +   + ++   +  L   G   +   +I     L NL  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQI 341
           +N +          +  L N TK+  L+L  N    V   + L ++      +   S QI
Sbjct: 72  DNQITD--------LAPLKNLTKITELELSGNPLKNVSAIAGLQSI----KTLDLTSTQI 119

Query: 342 SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLT 401
           +   P  +A L NL  L ++ NQ+    PLA   L +LQ L +    +  +  + L NL+
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQV--SDLTPLANLS 173

Query: 402 LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461
            LT L  + N +       I    +L  L                        + L +N 
Sbjct: 174 KLTTLKADDNKIS-----DISPLASLPNLIE----------------------VHLKNNQ 206

Query: 462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSL 521
           ++   P  + N  NL  + +++   + +             +  +  S     P+T+S  
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV--KGPSGAPIAPATISDN 262

Query: 522 KSITELDLSRNNLS 535
            +    +L+ N  S
Sbjct: 263 GTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 26/259 (10%)

Query: 297 ITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNL 355
           I           +    +     +  + L  +    T ++     ++      +  L NL
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDGI----TTLSAFGTGVTTIEG--VQYLNNL 65

Query: 356 NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG 415
             L ++ NQ+    PL    L  +  L L+ N L     S++  L  +  L L    +  
Sbjct: 66  IGLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 416 KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNL 473
             P  +    NL +L    N+++   P     +  L  L  L + +  ++   P  + NL
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP--LANL 172

Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNN 533
             L +L    N  S   P  L    +L  + +++N  +   P  L++  ++  + L+   
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 534 LSGHIPQYLENLSFLSFLN 552
           ++     Y  NL   + + 
Sbjct: 229 ITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 44/270 (16%), Positives = 99/270 (36%), Gaps = 27/270 (10%)

Query: 97  KILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL 156
            ++      +N +K  A  + +   +     +L  +  L+     +   +   +  L+ L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNL 65

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
             ++++ N++     + + ++  +    ++ N    +  +   + S++ + + + +    
Sbjct: 66  IGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDV 122

Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL 276
            PL     L NL+   +  N +T      L+  TNLQ L I     S       + L  L
Sbjct: 123 TPLA---GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIA 335
           + L   +N +          I+ L +   L  + L +N+   V P +  +NL      + 
Sbjct: 176 TTLKADDNKISD--------ISPLASLPNLIEVHLKNNQISDVSPLANTSNL----FIVT 223

Query: 336 NGSNQISGTIPDVIANLVNLNALGVESNQL 365
             +  I+        NLV  N +   S   
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 19/228 (8%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
              I+   PD    L N   +    + +  T+  A  +L  +  L      +  T    +
Sbjct: 6   PTAINVIFPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGV 59

Query: 398 GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDL 457
             L  L  L L+ N +   + P + N   +  L    N L        L  I     LDL
Sbjct: 60  QYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT---LDL 114

Query: 458 SDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST 517
           +   +       +  L NL  L +  N  +   P  L G T+L+YL + +   +   P  
Sbjct: 115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 565
           L++L  +T L    N +S   P  L +L  L  ++L  N      P+ 
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 52/291 (17%), Positives = 111/291 (38%), Gaps = 49/291 (16%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
            ++L  +  L+      +   +  + + +N++  E  +N++  ++   + NL  +  L +
Sbjct: 37  QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELEL 92

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
           + N LK    ++I  L +++ +D+   ++     + ++ + NL    +  NQ       I
Sbjct: 93  SGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQ-------I 141

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
            NIS L                     L NL+Y SI    ++      L+N + L  L+ 
Sbjct: 142 TNISPLA-------------------GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA 180

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
           + N  S  +S   + L NL  ++L  N +          ++ L N + L ++ L +    
Sbjct: 181 DDNKIS-DIS-PLASLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTLTNQTIT 230

Query: 318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
               F   NL +           I+   P  I++     +  +  N  +  
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 14/203 (6%)

Query: 77  EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN 136
            ++ L  ++ L LT+   +   +T L+  SN+       N++    P  +  L  LQ L+
Sbjct: 102 AIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157

Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPL 196
           I    +    P  + NLS L  +    N++     S ++ + NLI  ++  NQ S + PL
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSPL 213

Query: 197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
             N S+L  + +            N   +       + G +       ++S+        
Sbjct: 214 -ANTSNLFIVTLTNQTITNQPVFYNNNLVVPN---VVKGPSGAPIAPATISDNGTYASPN 269

Query: 257 INGNL--FSGKVSINFSRLQNLS 277
           +  NL  F   VS  F++     
Sbjct: 270 LTWNLTSFINNVSYTFNQSVTFK 292

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 53/279 (18%), Positives = 89/279 (31%), Gaps = 23/279 (8%)

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVN---L 355
           L      LE L    +    +  F+    S+++  +   + +I   I      ++    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 356 NALGVESNQLAGTIPLAIGELKSLQMLFLN-ENFLRGTIPSSLGNL-----TLLTQLILE 409
             L +E+ ++ GT P  + E     +  LN  N    T  + L  L       L  L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSG-------TVPRQLLHIITLPVLLDLSDNLL 462
             +        +     L  L    N   G         P +   +  L  L +      
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETP 216

Query: 463 NGHFPAEVGNLKNLVSLDISSNMFSGEIP-TTLGGCTSLEYLGMQDNSFTRSIPSTLSSL 521
           +G   A       L  LD+S N         +    + L  L +        +P  L + 
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA- 274

Query: 522 KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
             ++ LDLS N L    P   + L  +  L+L  N F  
Sbjct: 275 -KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 17/251 (6%)

Query: 326 NLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLA-IGELKSLQMLFL 384
           N S    + ++  N +     ++     +L  L    +  A       I +  SL+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 385 NENFLRGTIPSS---LGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTV 441
               +   I      +  ++ L +L LE   + G  PP +       L       +S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 442 PRQLLHIITLPVL-----LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG 496
               L  +   +      L ++          +V     L +LD+S N   GE       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 497 C----TSLEYLGMQDNSFTR---SIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFL 548
           C     +L+ L +++           +  ++   +  LDLS N+L         +  S L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 549 SFLNLSYNHFE 559
           + LNLS+   +
Sbjct: 256 NSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 28/279 (10%)

Query: 55  GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSH---CSNVMKF 111
           G  S    +   +         ++     L+ LT+       +IL         S + + 
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 112 EASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQ-LPASIGNLS-----ALQEIDVRGNR 165
              N ++    P  +       +  +   ++      A +  L       L+ + +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPLI-----YNISSLQYIFIHTNRFHGSLPLD 220
                   +     L + +++ N   G   LI         +LQ + +          + 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 221 NGV--NLPNLRYFSISGNNLTGSLQDSL-SNATNLQGLEINGNLFSGKVSINFSRLQNLS 277
           + +      L+   +S N+L  +         + L  L ++         +       LS
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAKLS 277

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            L+L  N         LD         ++  L L  N F
Sbjct: 278 VLDLSYNR--------LDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 48/274 (17%), Positives = 82/274 (29%), Gaps = 25/274 (9%)

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
             NC     ++L+             +    + +  +    +S         L  L    
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS---------LKRLTVRA 77

Query: 360 VESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIP 418
                      L +  +  LQ L L    + GT P  L   T     IL + N+      
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 419 PSIGNCQNLILLTTRKNKLSG----TVPRQLLHIITLPVLLDLSDNLLNGHFP----AEV 470
             +   Q  +    +   ++         + + +      LDLSDN   G          
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 471 GNLKNLVSLDISSNMF---SGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS-LKSITE 526
                L  L + +      SG           L+ L +  NS   +  +        +  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 527 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
           L+LS   L   +P+ L   + LS L+LSYN  + 
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 47/294 (15%), Positives = 87/294 (29%), Gaps = 21/294 (7%)

Query: 111 FEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
             A N    A++ +  G   +  +L   +          I    +L+ + VR  R+  RI
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 171 PSTISHVRN---LISFNVARNQFSGMIP---LIYNISSLQYIFIHTNRFHG---SLPLDN 221
                 V     L    +   + +G  P   L      L  + +    +      L    
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFS----RLQNLS 277
               P L+  SI+  +      + +     L  L+++ N   G+  +  +    +   L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANG 337
            L L    +            L     +L+ LDL  N           +    +  +   
Sbjct: 205 VLALRNAGM---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG 391
              +      + A L  L+   +  N+L    P    EL  +  L L  N    
Sbjct: 262 FTGLKQVPKGLPAKLSVLD---LSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 40/300 (13%)

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLS---NATNLQGL 255
              SL+Y+    +         + +   +L+  ++    +   +          + LQ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 256 EINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
            +     +G                L   N+   T +             L+VL +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 316 FGGVLPF------SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
                        +L+ L ++          IS   P     L  L          +G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 370 PLAIGELKSLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
                    LQ L L+ N LR    +      + L  L L    L+ ++P  +       
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL------- 272

Query: 429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG 488
                        P +L         LDLS N L+   P+    L  + +L +  N F  
Sbjct: 273 -------------PAKLSV-------LDLSYNRLD-RNPSP-DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 21/222 (9%)

Query: 35  RVTGLDLRQQSVGGVLSPFVGNLSFP--RSINLPNKSFRGEIPHEVSNLF-----RLQNL 87
            +  L L    V G   P +   + P    +NL N S+       ++ L       L+ L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVL 154

Query: 88  TLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI----GNLLMLQILNIAENHLK 143
           ++   +        +     +   + S+N    E  +           LQ+L +    ++
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 144 ---GQLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVRNLISFNVARNQFSGMIPLIYN 199
              G   A       LQ +D+  N L     +        L S N++      +   +  
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273

Query: 200 ISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS 241
            + L  + +  NR        +   LP +   S+ GN    S
Sbjct: 274 -AKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPFLDS 311

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 17/201 (8%)

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G++++Q    IP +    K+     L ++    T   +   +  LT + L   N+   + 
Sbjct: 7   GLKASQDNVNIPDS--TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVT-DLT 60

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNL 476
             I    N+  LT      +   P     I  L  L  L +    +       +  L +L
Sbjct: 61  G-IEYAHNIKDLTINNIHATNYNP-----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG 536
             LDIS +     I T +     +  + +  N     I   L +L  +  L++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 537 HIPQYLENLSFLSFLNLSYNH 557
           +    +E+   L+ L      
Sbjct: 174 YRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 79  SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA 138
           + +  L  +TL N   +   LT + +  N+     +N       P  I  L  L+ L I 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIY 198
              +      ++  L++L  +D+  +     I + I+ +  + S +++ N     I  + 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
            +  L+ + I  +  H    ++   + P L         + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 16/172 (9%)

Query: 173 TISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFS 232
           T + + +L    +A    + +  +     +++ + I+        P+     L NL    
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISG---LSNLERLR 94

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAN 292
           I G ++T     +LS  T+L  L+I+ +     +    + L  ++ ++L  N   T    
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--- 151

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISG 343
               I  L    +L+ L++  +             L     ++   S  I G
Sbjct: 152 ----IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKL----NQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 44/225 (19%)

Query: 266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-L 324
           V+I  S  +      LG+++    T   +           L  + L +     +      
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANITEAQM---------NSLTYITLANINVTDLTGIEYA 65

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
            N+     ++   +   +   P  I+ L NL  L +    +       +  L SL +L +
Sbjct: 66  HNI----KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQ 444
           + +    +I + +  L  +  + L  N     I P +     L  L  + + +       
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH------ 172

Query: 445 LLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE 489
                      D             + +   L  L   S    G+
Sbjct: 173 -----------DYRG----------IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
           +S L  L+ L +     +   + +LS  +++   + S++  +  I  +I  L  +  +++
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
           + N     +   +  L  L+ ++++ + +       I     L           G
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 35/233 (15%)

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGV 360
           +       ++        + P    +L    T +    N +       +     L  L +
Sbjct: 7   SKVASHLEVNCDKRNLTAL-P---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 361 ESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
           +  +L   +    G L  L  L L+ N L+ ++P     L  LT L +  N L   +P  
Sbjct: 63  DRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSL 479
                 L  L                        L L  N L    P  +      L  L
Sbjct: 119 ALR--GLGELQE----------------------LYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN 532
            +++N  +      L G  +L+ L +Q+NS   +IP        +    L  N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 13/187 (6%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
            +   L ++ NL              L++LNL    L          + +      L  L
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--------LQVDGTLPVLGTL 82

Query: 310 DLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTI 369
           DL  N+    LP     L   +T +    N+++      +  L  L  L ++ N+L  T+
Sbjct: 83  DLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 370 PLAI-GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI 428
           P  +      L+ L L  N L       L  L  L  L+L+ N+L   IP        L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 429 LLTTRKN 435
                 N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 12/184 (6%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
             IL+++EN L     A++   + L ++++    L          +  L + +++ NQ  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSL-SNAT 250
            +  L   + +L  + +  NR   SLPL     L  L+   + GN L  +L   L +   
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148

Query: 251 NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD 310
            L+ L +  N  +   +   + L+NL  L L EN+L T                 L    
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-------HLLPFAF 201

Query: 311 LHSN 314
           LH N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 399 NLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDL 457
            +    ++  +  NL   +PP +  +   L L        S         +  L    +L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL----NL 62

Query: 458 SDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS- 516
               L      + G L  L +LD+S N     +P       +L  L +  N  T S+P  
Sbjct: 63  DRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557
            L  L  + EL L  N L    P  L     L  L+L+ N+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 81/438 (18%), Positives = 144/438 (32%), Gaps = 58/438 (13%)

Query: 178 RNLISFNVARNQFS--GMIPLIYNISSLQYIFIHTNRFH--GSLPLDNGV-NLPNLRYFS 232
            ++ S ++   + S      L+  +   Q + +            + + +   P L   +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 233 ISGNNLTGS----LQDSL-SNATNLQGLEINGNLFSGK----VSINFSRLQNLSRLNLGE 283
           +  N L       +   L + +  +Q L +     +G     +S     L  L  L+L +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL---SITMTEIANGSNQ 340
           N LG      L    LL    +LE L L            LA++        E+   +N 
Sbjct: 123 NLLGDAGLQLL-CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 341 ISGTIPDVIA-----NLVNLNALGVESNQL----AGTIPLAIGELKSLQMLFLNENFLRG 391
           I+     V+      +   L AL +ES  +       +   +    SL+ L L  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 392 T-----IPSSLGNLTLLTQLILEVNNLQGK----IPPSIGNCQNLILLTTRKNKLSGTVP 442
                  P  L   + L  L +    +  K    +   +   ++L  L+   N+L     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 443 RQLLHIITLP----VLLDLSDNLLNGHFPAEVGNL----KNLVSLDISSNMFSGEIPTTL 494
           R L   +  P      L +          +   ++    + L+ L IS+N         L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 495 G-----GCTSLEYLGMQDNSFT----RSIPSTLSSLKSITELDLSRNNLSGHIPQYL--- 542
                   + L  L + D   +     S+ +TL +  S+ ELDLS N L       L   
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 543 --ENLSFLSFLNLSYNHF 558
             +    L  L L   ++
Sbjct: 422 VRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 40/271 (14%), Positives = 89/271 (32%), Gaps = 37/271 (13%)

Query: 83  RLQNLTLTNNYFSGKILTDLSHC-----SNVMKFEASNNKLEAEIPVEIGNLLM----LQ 133
             + LT++NN  +   +  L          +   +  +  + ++   ++  ++     L+
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 134 ILNIAENHLKGQ-----LPASIGNLSALQEIDVRGNRLGGR----IPSTISHVRNLISFN 184
            L +  N L         P  +   S L+ + +    +  +    +   +    +L   +
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 185 VARNQF--SGMI----PLIYNISSLQYIFIHTNRF--HGSLPLDNGV-NLPNLRYFSISG 235
           +A N+    G       L+     L+ +++ +  F         + +     L    IS 
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 236 NNLTGS----LQDSL-SNATNLQGLEINGNLFSGK----VSINFSRLQNLSRLNLGENNL 286
           N L  +    L   L    + L+ L +     S      ++       +L  L+L  N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
           G      L   ++      LE L L+   + 
Sbjct: 411 GDAGILQL-VESVRQPGCLLEQLVLYDIYWS 440

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 46/291 (15%), Positives = 92/291 (31%), Gaps = 52/291 (17%)

Query: 246 LSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK 305
                      +     +   ++  + L ++ ++    +++ +        +  +     
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--------VQGIQYLPN 69

Query: 306 LEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQ 364
           +  L L+ N+   + P + L NL      +    N++       + +L  L +L +E N 
Sbjct: 70  VTKLFLNGNKLTDIKPLANLKNL----GWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123

Query: 365 LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC 424
           ++    L    L  L+ L+L  N +  T  + L  LT L  L LE N +       I   
Sbjct: 124 ISDINGLV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-----DIVPL 174

Query: 425 QNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN 484
             L  L                        L LS N ++      +  LKNL  L++ S 
Sbjct: 175 AGLTKLQN----------------------LYLSKNHISD--LRALAGLKNLDVLELFSQ 210

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS 535
               +             +   D S     P  +S      + ++  +   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 56/266 (21%), Positives = 98/266 (36%), Gaps = 44/266 (16%)

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIA 350
             +  I       +    +L        +  + L ++     +I   ++ I  ++   I 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDIK-SVQG-IQ 65

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEV 410
            L N+  L +  N+L    PLA   LK+L  LFL+EN +     SSL +L  L  L LE 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEH 121

Query: 411 NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV 470
           N +   I   + +   L  L    NK++                 D++           +
Sbjct: 122 NGIS-DING-LVHLPQLESLYLGNNKIT-----------------DITV----------L 152

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
             L  L +L +  N  S  +P  L G T L+ L +  N  +  +   L+ LK++  L+L 
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELF 208

Query: 531 RNNLSGHIPQYLENLSFLSFLNLSYN 556
                     +  NL   + +  +  
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 14/209 (6%)

Query: 78  VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI 137
           +  L  +  L L  N  +   +  L++  N+       NK++    ++  +L  L+ L++
Sbjct: 64  IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSL 119

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI 197
             N +       + +L  L+ + +  N++     + +S +  L + ++  NQ S ++PL 
Sbjct: 120 EHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPL- 174

Query: 198 YNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
             ++ LQ +++  N       L     L NL    +          +  SN      ++ 
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAG---LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 258 NGNLFSGKVSINFSRLQNLSRLNLGENNL 286
                     I  S   +  + N+  +  
Sbjct: 232 TDGSLVTPEII--SDDGDYEKPNVKWHLP 258

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI---P 394
                       A    L    +   +    +   +   K LQ L     +   TI    
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVL 454
            +L  L    + +   + L+   P       +L      +N +                +
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-------KMEYADVRV 445

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           L L+   L       +  L  +  LD+S N     +P  L     LE L   DN+   ++
Sbjct: 446 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 515 PSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYN 556
              +++L  + EL L  N L      Q L +   L  LNL  N
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 50/346 (14%), Positives = 100/346 (28%), Gaps = 25/346 (7%)

Query: 211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINF 270
                 L      ++    + S     L+      L+  + +  L +  +     V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 271 SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSIT 330
              +N        +       + L   T     T  +              +   + +  
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR 390
                  S + S  +   + +   L  L  E+     TI   I  +++L  L   +  L 
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETL- 405

Query: 391 GTIPSSLGNLTLLTQLILEV-----NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQL 445
                    L  +  +         +    +         ++ +L      L+      L
Sbjct: 406 ----QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-----VL 456

Query: 446 LHIITLPVL--LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
            H+  L ++  LDLS N L    P  +  L+ L  L  S N     +   +     L+ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 504 GMQDNSFTR-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
            + +N   + +    L S   +  L+L  N+L        E L+ +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 26/194 (13%)

Query: 386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQL 445
                            L +  L V      +   + +C+ L  L         T+   +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 446 LHIITLPVLLDLSDNLLN--------------------GHFPAEVGNLKNLVSLDISSNM 485
             +  L    +                                      ++  L ++   
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 486 FSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545
            +  +   L     + +L +  N    ++P  L++L+ +  L  S N L  ++   + NL
Sbjct: 453 LT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANL 507

Query: 546 SFLSFLNLSYNHFE 559
             L  L L  N  +
Sbjct: 508 PRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 47/269 (17%), Positives = 87/269 (32%), Gaps = 19/269 (7%)

Query: 171 PSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRY 230
           PS +       +    +        +     S +   +  +R        +      L  
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE--CWCRDSATDEQLFR 353

Query: 231 FSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290
             +S    T  LQ  L +   LQ LE                ++ L  L   +  L    
Sbjct: 354 CELSVEKST-VLQSELESCKELQELEPENKWCL---LTIILLMRALDPLLYEKETL---- 405

Query: 291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA 350
                 +  +       + DL S          L      +  +      +  T+   + 
Sbjct: 406 -QYFSTLKAVDPMRAAYLDDLRSKFLLE--NSVLKMEYADVRVLHLAHKDL--TVLCHLE 460

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEV 410
            L+ +  L +  N+L   +P A+  L+ L++L  ++N L   +   + NL  L +L+L  
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517

Query: 411 NNLQG-KIPPSIGNCQNLILLTTRKNKLS 438
           N LQ       + +C  L+LL  + N L 
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
           E          ++ L L +   +  +L  L     V   + S+N+L   +P  +  L  L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFS 191
           ++L  ++N L+  +   + NL  LQE+ +  NRL        +     L+  N+  N   
Sbjct: 489 EVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 192 GMIPLIYNISSL 203
               +   ++ +
Sbjct: 547 QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 45/218 (20%)

Query: 101 DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQL---PASIGNLSALQ 157
           D +    + + E S  K    +  E+ +   LQ L          +     ++  L   +
Sbjct: 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402

Query: 158 EIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSL 217
           E     + L    P   +++ +L S  +  N    M      +  L +  +         
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV------- 455

Query: 218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS 277
            L +   L  + +  +S N L  +L  +L+    L+ L+ + N            +  ++
Sbjct: 456 -LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN--------ALENVDGVA 505

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
            L                         +L+ L L +NR
Sbjct: 506 NL------------------------PRLQELLLCNNR 519

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 8e-12
 Identities = 45/218 (20%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-LGNLTL 402
            IP  +    N   L     +L      A      L+ + +++N +   I +    NL  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 403 LTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461
           L ++ +E  N    I P    N  NL  L      +   +P          VLLD+ DN+
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 462 LNGHFPAEV--GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS 519
                      G     V L ++ N       +   G    E     +N+          
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 520 SLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYN 556
                  LD+SR  +   +P Y LENL  L   +    
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 11/198 (5%)

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQN 426
            IP  +   ++   L      LR     +      L ++ +  N++   I   +  N   
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 427 LI-LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSN 484
           L  +   + N L   +  +    +     L +S+  +  H P     +    V LDI  N
Sbjct: 81  LHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN 138

Query: 485 MFSGEIPTTL--GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY- 541
           +    I      G       L +  N     I ++  +   + EL+LS NN    +P   
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 542 LENLSFLSFLNLSYNHFE 559
               S    L++S     
Sbjct: 198 FHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 44/256 (17%), Positives = 83/256 (32%), Gaps = 36/256 (14%)

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP-DVIANLVNLNALGVE-SN 363
              L     +   +   + +     + +I    N +   I  DV +NL  L+ + +E +N
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-SLGNLTLLTQLILEVNNLQGKIPPSI- 421
            L    P A   L +LQ L ++   ++  +P     +      L ++ N     I  +  
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 422 -GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLD 480
            G     ++L   KN +   +     +   L  L    +N L                 +
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE----------------E 192

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           + +++F G         +    L +            L +LK +        NL      
Sbjct: 193 LPNDVFHG--------ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT- 241

Query: 541 YLENLSFLSFLNLSYN 556
            LE L  L   +L+Y 
Sbjct: 242 -LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 42/260 (16%), Positives = 75/260 (28%), Gaps = 37/260 (14%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
              L      L+     +      L++I++  N +   I                 + FS
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE---------------ADVFS 76

Query: 192 GMIPLIYNISSLQYIFI-HTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
            +         L  I I   N     +  +   NLPNL+Y  IS   +         ++ 
Sbjct: 77  NL-------PKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 251 NLQGLEINGNLFSGKVSIN-FSRLQNLSR-LNLGENNLGTGTANDLDFITLLTNCTKLEV 308
               L+I  N+    +  N F  L   S  L L +N +     +              E+
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS------AFNGTQLDEL 182

Query: 309 LDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT 368
               +N    +        S     +     +I       + NL  L A    + +    
Sbjct: 183 NLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---K 238

Query: 369 IPLAIGELKSLQMLFLNENF 388
           +P  + +L +L    L    
Sbjct: 239 LP-TLEKLVALMEASLTYPS 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI-NFSRLQNLSRLNLG 282
            L N    ++   ++T     S    + +Q    + +      S+       NL  L+L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS 342
            N +          ++ L + TKLE L ++ NR   +     A L    + +   +N++ 
Sbjct: 72  HNQISD--------LSPLKDLTKLEELSVNRNRLKNLNGIPSACL----SRLFLDNNELR 119

Query: 343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
            T    + +L NL  L + +N+L   + L    L  L++L L+ N +  T    L  L  
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEI--TNTGGLTRLKK 173

Query: 403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435
           +  + L        +   +     L +  T K+
Sbjct: 174 VNWIDLTGQKC---VNEPVKYQPELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 18/211 (8%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL 397
              I+   PD    L N     +    +   +     EL  +Q    + + +     + +
Sbjct: 6   PTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNI--QSLAGM 59

Query: 398 GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDL 457
              T L +L L  N +   + P + +   L  L+  +N+L          +  L     L
Sbjct: 60  QFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL----FL 113

Query: 458 SDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST 517
            +N L       + +LKNL  L I +N     I   LG  + LE L +  N  T      
Sbjct: 114 DNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN--TGG 167

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
           L+ LK +  +DL+         +Y   L   
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/257 (17%), Positives = 89/257 (34%), Gaps = 26/257 (10%)

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGTIPDVIA 350
             ++ +            +L       ++    L+ +          ++ I       + 
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGV----QNFNGDNSNIQSLAG--MQ 60

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEV 410
              NL  L +  NQ++   PL   +L  L+ L +N N L      +L  +       L +
Sbjct: 61  FFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRL-----KNLNGIPSACLSRLFL 113

Query: 411 NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV 470
           +N + +   S+ + +NL +L+ R NKL   V    L  +    +LDL  N +       +
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE---VLDLHGNEITNTGG--L 168

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
             LK +  +D++      E             +   D  +    P  +S+  S  +  + 
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVL 226

Query: 531 RNNLSGHIPQYLENLSF 547
                   P Y + +S+
Sbjct: 227 WEL-----PVYTDEVSY 238

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 24/218 (11%)

Query: 77  EVSNLFRLQNLT-LTNNYFSGKILTD---LSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
            ++ +F    L          + +TD       S V  F   N+ +++     +     L
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR--NLISFNVARNQF 190
           + L+++ N +     + + +L+ L+E+ V  NRL       ++ +    L    +  N+ 
Sbjct: 66  KELHLSHNQISD--LSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL 118

Query: 191 SGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
                L  ++ +L+ + I  N+    + L     L  L    + GN +T +    L+   
Sbjct: 119 RDTDSL-IHLKNLEILSIRNNKLKSIVMLGF---LSKLEVLDLHGNEITNT--GGLTRLK 172

Query: 251 NLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
            +  +++ G       +        L   N  ++  G 
Sbjct: 173 KVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGR 207

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/217 (17%), Positives = 79/217 (36%), Gaps = 12/217 (5%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-SLGNLTL 402
            IP +  +   L    +    L      A   L ++  ++++ +     + S S  NL+ 
Sbjct: 25  RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 403 LTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL 461
           +T + +        I P        L  L      L        ++   +  +L+++DN 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 462 LNGHFPAEV--GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS-TL 518
                P     G     ++L + +N F+  +       T L+ + +  N +   I     
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 519 SSLKS-ITELDLSRNNLSGHIPQY-LENLSFLSFLNL 553
             + S  + LD+S+ +++  +P   LE+L  L   N 
Sbjct: 201 GGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 9/186 (4%)

Query: 378 SLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNK 436
           S Q L L E  LR     +  NL  ++++ + ++    ++      N   +  +  R  +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAE--VGNLKNLVSLDISSNMFSGEIPTTL 494
               +    L  + L   L + +  L   FP    V +      L+I+ N +   IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 495 --GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENL-SFLSF 550
             G C     L + +N FT S+     +   +  + L++N     I +     + S  S 
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 551 LNLSYN 556
           L++S  
Sbjct: 210 LDVSQT 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 14/216 (6%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGE 283
            P+ +   +   +L      + SN  N+  + ++ ++   ++  + F  L  ++ + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISG 343
               T    D      L     L+ L + +         +    +     +    N    
Sbjct: 90  TRNLTYIDPD-----ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 344 TIP-DVIANLVN-LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSL--GN 399
           +IP +    L N    L + +N    ++         L  ++LN+N     I      G 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435
            +  + L +   ++   +P      ++L  L  R  
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 43/262 (16%)

Query: 104 HCSNVMKFEASNNKLEA--EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
            C     F  +   ++    +P         Q L + E HL+     +  NL  +  I V
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPS------TQTLKLIETHLRTIPSHAFSNLPNISRIYV 62

Query: 162 RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDN 221
             +                +   +  + F  +       S + +I I   R    +  D 
Sbjct: 63  SID--------------VTLQ-QLESHSFYNL-------SKVTHIEIRNTRNLTYIDPDA 100

Query: 222 GVNLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINGNLFSGKVSIN-FSRLQNLSR 278
              LP L++  I    L     D   + +      LEI  N +   + +N F  L N + 
Sbjct: 101 LKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 279 -LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLSITMTEIAN 336
            L L  N   +             N TKL+ + L+ N++  V+   +   +    + +  
Sbjct: 160 TLKLYNNGFTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 337 GSNQISGTIPDVIANLVNLNAL 358
               ++      + +L  L A 
Sbjct: 213 SQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS-TLSSLKSITELDLSRNN 533
           +  +L +                 ++  + +  +   + + S +  +L  +T +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 534 LSGHIP-QYLENLSFLSFLNLSYNH 557
              +I    L+ L  L FL +    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTG 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 82/504 (16%), Positives = 143/504 (28%), Gaps = 185/504 (36%)

Query: 94  FSGKILTDLSHCSNVMKFEA---SNNKLEAEI----PVEIGNLLMLQIL-----NIAENH 141
           F    + +   C +V        S  +++  I        G L +   L      + +  
Sbjct: 25  FEDAFVDNFD-CKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 142 LKGQLPASIGNL-SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLI--Y 198
           ++  L  +   L S ++           R PS          +   R++      +   Y
Sbjct: 83  VEEVLRINYKFLMSPIKTEQ--------RQPS-----MMTRMYIEQRDRLYNDNQVFAKY 129

Query: 199 NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
           N+S LQ             P                       L+ +L      + + I+
Sbjct: 130 NVSRLQ-------------PYLK--------------------LRQALLELRPAKNVLID 156

Query: 259 GNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL---DLHSNR 315
           G L SGK                                T +     L+V     +    
Sbjct: 157 GVLGSGK--------------------------------TWVA----LDVCLSYKVQCKM 180

Query: 316 FGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG-----TIP 370
              +   +L N +               +   V+  L  L    ++ N  +       I 
Sbjct: 181 DFKIFWLNLKNCN---------------SPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIK 224

Query: 371 LAIGELKS-LQMLFLNENFLRGTIPSSLGNLTLLTQLIL-EVNNLQGKIPPSI-----GN 423
           L I  +++ L+ L  ++ +      + L        L+L  V N               +
Sbjct: 225 LRIHSIQAELRRLLKSKPY-----ENCL--------LVLLNVQN------AKAWNAFNLS 265

Query: 424 CQNLILLTTRK----NKLSGTVPRQ--LLHI---ITLPVLLDLSDNLLNGHF---PAEV- 470
           C+  ILLTTR     + LS        L H    +T   +  L    L+      P EV 
Sbjct: 266 CK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 471 -GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITEL-- 527
             N        +S  + +  I    G  T   +  +  +  T  I S+L+ L+   E   
Sbjct: 324 TTNP-----RRLS--IIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRK 373

Query: 528 ---DLS--RNNLSGHIP-QYLENL 545
               LS    +   HIP   L  +
Sbjct: 374 MFDRLSVFPPSA--HIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 89/514 (17%), Positives = 143/514 (27%), Gaps = 169/514 (32%)

Query: 50  LSPFVGNLS------FPRSINLPNKSFRGEI---PHEVSNLFRLQNLTLTN--------- 91
              FV N         P+SI L  +     I      VS   RL    L+          
Sbjct: 26  EDAFVDNFDCKDVQDMPKSI-LSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 92  ------NY--FSGKILTDLSHCSNVMK-FEASNNKLEAEIPVEI-GNLLMLQILNIAENH 141
                 NY      I T+    S + + +    ++L  +  V    N+  LQ        
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 142 LKGQLPAS---------IGN----LSALQEIDVRGNRLGGRI----------PSTISHVR 178
           L    PA           G     L       V+  ++  +I          P T+  + 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEML 202

Query: 179 NLISFNVARN---QFSGMIPLIYNISSLQY---IFIHTNRFHGSL-PLDNGVNLPN-LRY 230
             + + +  N   +      +   I S+Q      + +  +   L  L N V        
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA 261

Query: 231 FSISGNNL--T--GSLQDSLSNAT--------NLQGLEI--NGNLFSGKVSINFSRLQNL 276
           F++S   L  T    + D LS AT        +   L      +L    +     R Q+L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDL 318

Query: 277 SRLNLGENNLGTGT--ANDLDFITLLTN-----CTK--------LEVLD--LHSNRFG-- 317
            R  L  N         +  D +    N     C K        L VL+   +   F   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 318 GVLPFSLANLSIT-------------------MTEIANGS------NQISGTIPDV---- 348
            V P    +  I                    + ++   S       + + +IP +    
Sbjct: 379 SVFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 349 ---IANLVNLNALGVESNQLA------GTIPLA--------IG----------ELKSLQM 381
              + N   L+   V+   +         IP          IG           +   +M
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 382 LFLNENFLRGTI---------PSSLGNLTLLTQL 406
           +FL+  FL   I           S+ N   L QL
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILN--TLQQL 527

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 45/237 (18%), Positives = 71/237 (29%), Gaps = 31/237 (13%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
            NL  +   +    N +         +   L  L +   ++      A   L  L  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPR 443
             N ++     +   L+ L +L+    NL   +     G+ + L  L    N +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ----- 137

Query: 444 QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY- 502
                 +           L  +F     NL NL  LD+SSN       T L     +   
Sbjct: 138 ------SFK---------LPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 503 ---LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 556
              L +  N     I         + EL L  N L        + L+ L  + L  N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 51/263 (19%), Positives = 81/263 (30%), Gaps = 60/263 (22%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKL 306
            + + L+++ N      S +F     L  L+L    + T   G    L         + L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---------SHL 78

Query: 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366
             L L  N         + +L+                     + L +L  L      LA
Sbjct: 79  STLILTGNP--------IQSLA-----------------LGAFSGLSSLQKLVAVETNLA 113

Query: 367 GTIPLAIGELKSLQMLFLNENFLRG-TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ 425
                 IG LK+L+ L +  N ++   +P    NLT L  L L  N +Q  I     + +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC--TDLR 170

Query: 426 NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNM 485
            L  +                        LDLS N +N            L  L + +N 
Sbjct: 171 VLHQMPLLNLS------------------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211

Query: 486 FSGEIPTTLGGCTSLEYLGMQDN 508
                       TSL+ + +  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 44/260 (16%), Positives = 82/260 (31%), Gaps = 59/260 (22%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS 191
            + L+++ N L+     S  +   LQ +D+    +                         
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------------------------- 64

Query: 192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
                                   ++      +L +L    ++GN +      + S  ++
Sbjct: 65  -----------------------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 252 LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDL 311
           LQ L       +   +     L+ L  LN+  N +              +N T LE LDL
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----QSFKLPEYFSNLTNLEHLDL 156

Query: 312 HSNRF----GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG 367
            SN+        L   L  + +    +    N ++  I       + L  L +++NQL  
Sbjct: 157 SSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214

Query: 368 TIPLAIGELKSLQMLFLNEN 387
                   L SLQ ++L+ N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 20/210 (9%)

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPS 172
           S N L         +   LQ+L+++   ++  +      +LS L  + + GN +   +  
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLAL 93

Query: 173 TI-SHVRNLISFNVARNQFSGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNG-VNLPNL 228
              S + +L          +  +    I ++ +L+ + +  N    S  L     NL NL
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNL 151

Query: 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSI----NFSRLQNLSRLNLGEN 284
            +  +S N +       L     +  L ++ +L    ++      F  ++ L  L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210

Query: 285 NLGTGTANDLDFITLLTNCTKLEVLDLHSN 314
            L +      D        T L+ + LH+N
Sbjct: 211 QLKSVPDGIFD------RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 48/231 (20%)

Query: 64  NLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDL-----SHCSNVMKFEASNNKL 118
           +L + SF         +   LQ L L+        +  +        S++     + N +
Sbjct: 42  HLGSYSF--------FSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 119 EAEIPVEI-GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV 177
           ++ + +     L  LQ L   E +L       IG+L  L+E++V  N +           
Sbjct: 89  QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI----------- 136

Query: 178 RNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF----SI 233
           ++          FS +       ++L+++ + +N+   S+   +   L  +        +
Sbjct: 137 QSFKLPEY----FSNL-------TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGEN 284
           S N +   +Q        L+ L ++ N         F RL +L ++ L  N
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 455 LDLSDNLL----NGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
           LDLS N L    +  F     +   L  LD+S               + L  L +  N  
Sbjct: 33  LDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 511 TRSIPS-TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557
             S+     S L S+ +L     NL+      + +L  L  LN+++N 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 52/318 (16%), Positives = 92/318 (28%), Gaps = 62/318 (19%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG----VLPFSL 324
            FS    +   +L  + + T     +    +L     ++ + L  N  G      L  ++
Sbjct: 3   RFS----IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENI 56

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
           A+    +                          +  E  +    +  A+ +   L  + L
Sbjct: 57  ASKK-DLEIAEFSDIFT--------------GRVKDEIPEALRLLLQALLKCPKLHTVRL 101

Query: 385 NENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI-LLTTRKNKLSG 439
           ++N    T    +   L   T L  L L  N L             +   L         
Sbjct: 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL------GPQAGAKIARALQELAVNKKA 155

Query: 440 TVPRQLLHIITLPVLLDLSDNLLNG----HFPAEVGNLKNLVSLDISSNMFSGE-----I 490
                L         +    N L       +     + + L ++ +  N    E     +
Sbjct: 156 KNAPPLRS-------IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 491 PTTLGGCTSLEYLGMQDNSFT----RSIPSTLSSLKSITELDLSRNNLSG----HIPQYL 542
              L  C  L+ L +QDN+FT     ++   L S  ++ EL L+   LS      +    
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 543 ENLSF--LSFLNLSYNHF 558
             L    L  L L YN  
Sbjct: 269 SKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 51/301 (16%)

Query: 224 NLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINGNLFSGKVSIN---------- 269
              +++   +SGN +       L +++++  +L+  E +                     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI 329
             +   L  + L +N  G      L  I  L+  T LE L LH+N  G   P + A ++ 
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPL--IDFLSKHTPLEHLYLHNNGLG---PQAGAKIAR 144

Query: 330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL--AGTIPLA--IGELKSLQMLFLN 385
            + E+A      +            L ++    N+L        A      + L  + + 
Sbjct: 145 ALQELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195

Query: 386 ENFLR-----GTIPSSLGNLTLLTQLILEVNNLQGK----IPPSIGNCQNLILLTTRKNK 436
           +N +R       +   L     L  L L+ N         +  ++ +  NL  L      
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 437 LSGTVPRQL---LHIITLPVL--LDLSDNLLNGH-----FPAEVGNLKNLVSLDISSNMF 486
           LS      +      +    L  L L  N +               + +L+ L+++ N F
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

Query: 487 S 487
           S
Sbjct: 316 S 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 47/227 (20%)

Query: 132 LQILNIAENHLKGQ----LPASIGNLSALQEIDVRGNRLG-------------GRIPSTI 174
           L  + +++N         L   +   + L+ + +  N LG               +    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 175 SHVRNLISFNVARNQFS--GMIPL---IYNISSLQYIFIHTNRFHGSLPLDNGV------ 223
            +   L S    RN+     M        +   L  + +  N          G+      
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-----PEGIEHLLLE 210

Query: 224 ---NLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINGNLFSGKVSINFSRL--- 273
                  L+   +  N  T     +L  +L +  NL+ L +N  L S + +         
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 274 ---QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG 317
                L  L L  N +       L    +      L  L+L+ NRF 
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 49/303 (16%), Positives = 94/303 (31%), Gaps = 59/303 (19%)

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTE 333
            ++  + L  N +GT  A  L     + +   LE+ +      G V             E
Sbjct: 32  DSVKEIVLSGNTIGTEAARWL--SENIASKKDLEIAEFSDIFTGRVK-----------DE 78

Query: 334 IANGSNQISGTIPDVIANLVNLNALGVESNQL--AGTIPLA--IGELKSLQMLFLNENFL 389
           I      +       +     L+ + +  N        PL   + +   L+ L+L+ N L
Sbjct: 79  IPEALRLLL----QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

Query: 390 -------------RGTIPSSLGNLTLLTQLILEVNNLQGK----IPPSIGNCQNLILLTT 432
                           +     N   L  +I   N L+         +  + + L  +  
Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 433 RKNKL-----SGTVPRQLLHIITLPVLLDLSDNLLNG----HFPAEVGNLKNLVSLDISS 483
            +N +        +   L +   L VL DL DN             + +  NL  L ++ 
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVL-DLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 484 NMFSGE----IPTTLGGC--TSLEYLGMQDNSFT----RSIPSTL-SSLKSITELDLSRN 532
            + S      +           L+ L +Q N       R++ + +   +  +  L+L+ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 533 NLS 535
             S
Sbjct: 314 RFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 56/365 (15%), Positives = 102/365 (27%), Gaps = 90/365 (24%)

Query: 84  LQNLTLTNNYFSGK----ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLM----LQIL 135
           ++  +L  +  + +    +   L    +V +   S N +  E    +   +     L+I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 136 NIAEN---HLKGQLPASIGNLSA-------LQEIDVRGNRLGGR----IPSTISHVRNLI 181
             ++     +K ++P ++  L         L  + +  N  G      +   +S    L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 182 SFNVARNQFS--GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT 239
              +  N         +   +  L                    N P LR      N L 
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELA-------------VNKKAKNAPPLRSIICGRNRLE 172

Query: 240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITL 299
                  +                      F   + L  + + +N +       L  +  
Sbjct: 173 NGSMKEWAKT--------------------FQSHRLLHTVKMVQNGIRPEGIEHL-LLEG 211

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALG 359
           L  C +L+VLDL  N F                    GS+ ++      + +  NL  LG
Sbjct: 212 LAYCQELKVLDLQDNTFT-----------------HLGSSALA----IALKSWPNLRELG 250

Query: 360 VESNQL--AGTIPLA----IGELKSLQMLFLNENFLRGTIPSSLG-----NLTLLTQLIL 408
           +    L   G   +       E   LQ L L  N +      +L       +  L  L L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 409 EVNNL 413
             N  
Sbjct: 311 NGNRF 315

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 58/257 (22%), Positives = 91/257 (35%), Gaps = 58/257 (22%)

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE 361
           N  K  V D  S +   + P   +N+     ++   SN++S         L  L  L + 
Sbjct: 15  NNNKNSV-DCSSKKLTAI-P---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69

Query: 362 SNQLAGTIPLAI-GELKSLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPP 419
            N+L  T+P  I  ELK+L+ L++ +N L+  +P  +   L  L +L L+ N L+  +PP
Sbjct: 70  DNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP 126

Query: 420 SIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSL 479
            +    +L  LT                       L L  N L                 
Sbjct: 127 RV--FDSLTKLTY----------------------LSLGYNELQ---------------- 146

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP 539
            +   +F           TSL+ L + +N   R        L  +  L L  N L     
Sbjct: 147 SLPKGVFDK--------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 540 QYLENLSFLSFLNLSYN 556
              ++L  L  L L  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 51/196 (26%), Positives = 75/196 (38%), Gaps = 26/196 (13%)

Query: 201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
           +  + + + +N+   SLP      L  LR   ++ N L            NL+ L +  N
Sbjct: 37  ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 261 LFSGKVSIN-FSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKLEVLDLHSNRF 316
                + I  F +L NL+ L L  N L +      + L         TKL  L L  N  
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---------TKLTYLSLGYNEL 145

Query: 317 ----GGVLPF-SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPL 371
                GV  F  L +L     E+   +NQ+          L  L  L +++NQL      
Sbjct: 146 QSLPKGV--FDKLTSL----KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 372 AIGELKSLQMLFLNEN 387
           A   L+ L+ML L EN
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 20/190 (10%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVRNLISFNVARNQF 190
            + L++  N L      +   L+ L+ + +  N+L   +P+ I   ++NL +  V  N+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 191 SGMIP--LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQ----D 244
              +P  +   + +L  + +  N+   SLP     +L  L Y S+  N L  SL     D
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 245 SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCT 304
            L   T+L+ L +  N         F +L  L  L L  N L        D      +  
Sbjct: 155 KL---TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD------SLE 205

Query: 305 KLEVLDLHSN 314
           KL++L L  N
Sbjct: 206 KLKMLQLQEN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
            + + L++     +      F  L  L+ LNL  N L T +A   D +      T+L  L
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTL 88

Query: 310 DLHSNRFGGV---LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366
            L +N+   +   +   L  L     ++  G NQ+      V   L  L  L + +NQL 
Sbjct: 89  GLANNQLASLPLGVFDHLTQL----DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 367 GTIPL-AIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
            +IP  A  +L +LQ L L+ N L+     +   L  L  + L  N
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 43/195 (22%)

Query: 226 PNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINGNLFSGKVSIN---FSRLQNLSRLNL 281
                  +S NNL+    + + +  TNL  L ++ N  +    I+   F  + NL  L+L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI 341
             N+L T             +   LEVL L+                         +N I
Sbjct: 96  SSNHLHTLDEFLFS------DLQALEVLLLY-------------------------NNHI 124

Query: 342 SGTIPDVIANLVNLNALGVESNQLAGTIP----LAIGELKSLQMLFLNENFLRGTIPSSL 397
                +   ++  L  L +  NQ++   P        +L  L +L L+ N L+    + L
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 398 GNLTLLTQLILEVNN 412
             L    +  L ++N
Sbjct: 184 QKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 417 IPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLK 474
           +P S+      L L     N LS          +T    L LS N LN    +E    + 
Sbjct: 33  VPQSLPSYTALLDL---SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
           NL  LD+SSN              +LE L + +N       +    +  + +L LS+N +
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 535 SGHIP----QYLENLSFLSFLNLSYNHFE 559
           S   P    +    L  L  L+LS N  +
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSI--GNCQNLILLTTRKNKLSGTVPRQLLHII 449
            +P SL + T    L L  NNL  ++          NL  L    N L+  +  +    +
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 450 TLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508
                LDLS N L+      +  +L+ L  L + +N               L+ L +  N
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 509 SFTRSIP----STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 557
             +   P       + L  +  LDLS N L       L+ L       L  ++
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 5/162 (3%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVI-ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLF 383
            +L      +    N +S    +     L NL++L +  N L      A   + +L+ L 
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVP 442
           L+ N L         +L  L  L+L  N++   +  +   +   L  L   +N++S    
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 443 RQLLHIITLPVL--LDLSDNLLNGHFPAEVGNLKNLVSLDIS 482
             +     LP L  LDLS N L      ++  L   V   + 
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 12/167 (7%)

Query: 156 LQEIDVRGNRLGGRIPSTI--SHVRNLISFNVARNQFSGMIPLI-YNISSLQYIFIHTNR 212
              +D+  N L  R+ +    + + NL S  ++ N  + +       + +L+Y+ + +N 
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNL---FSGKVSIN 269
            H +L      +L  L    +  N++    +++  +   LQ L ++ N    F  ++  +
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 270 FSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
            ++L  L  L+L  N L      DL  +           L LH+N  
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV----KNGLYLHNNPL 201

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
           TN Q L ++ N  +      F  L NL  L LG N LG       D      + T+L VL
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD------SLTQLTVL 93

Query: 310 DLHSNRFGGVLP---F-SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           DL +N+   VLP   F  L +L     E+    N+++  +P  I  L +L  L ++ NQL
Sbjct: 94  DLGTNQLT-VLPSAVFDRLVHL----KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

Query: 366 AGTIPLAIGELKSLQMLFLNEN 387
                 A   L SL   +L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
            NL  T+TEI    N I    P   +    L  + + +NQ++   P A   L+SL  L L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPR 443
             N +     S    L  L  L+L  N +   +      +  NL LL+   NKL  T+ +
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

Query: 444 QLLHIITLPVLLDLSDN 460
                +     + L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKL 306
             +  + +  N         FS  + L R++L  N +          L           L
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------RSL 82

Query: 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366
             L L+ N+   +       L  ++  +   +N+I+    D   +L NLN L +  N+L 
Sbjct: 83  NSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 367 GTIPLAIGELKSLQMLFLNEN 387
                    L+++Q + L +N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 7/145 (4%)

Query: 417 IPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLK 474
           IP ++      + L    +N +   +P            +DLS+N ++     +    L+
Sbjct: 26  IPTNLPETITEIRL---EQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
           +L SL +  N  +    +   G  SL+ L +  N            L ++  L L  N L
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 535 SGHIPQYLENLSFLSFLNLSYNHFE 559
                     L  +  ++L+ N F 
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
             + + +N +K   P +      L+ ID+  N++    P     +R+L S  +  N+ + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 193 MIP-LIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
           +   L   + SLQ + ++ N+ +  L +D   +L NL   S+  N L    + + S    
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 252 LQGLEINGNLF 262
           +Q + +  N F
Sbjct: 154 IQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIP-LIYNISSLQYIFIHTNRFHG 215
            EI +  N +    P   S  + L   +++ NQ S + P     + SL  + ++ N+   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 216 SLPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL 273
            LP    +   L +L+   ++ N +     D+  +  NL  L +  N         FS L
Sbjct: 94  ELP--KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 274 QNLSRLNLGEN 284
           + +  ++L +N
Sbjct: 152 RAIQTMHLAQN 162

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 66/434 (15%), Positives = 143/434 (32%), Gaps = 39/434 (8%)

Query: 146 LPASIGNLSALQEIDVRGNRLGGRIPSTIS-HVRNLISFNVAR-NQFS--GMIPLIYNIS 201
           + A   + + L+EI ++   +       I+   +N     ++    FS  G+  +     
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR 156

Query: 202 SLQYIFIHTNRF---HGSLPLDNGVNLPNLRYFSISG--NNLT-GSLQDSLSNATNLQGL 255
           +L+ + +  +      G           +L   +IS   + ++  +L+  ++   NL+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 256 EINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNR 315
           ++N  +   K++    R   L  L  G                 L+ C +L  L    + 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 316 FGGVLPFSLANLSITMTEIA-NGSNQISGTIPDVIANLVNLNALGVESN-QLAGTIPLAI 373
               LP ++ ++   +T +  + +   S  +  ++     L  L V    + AG   LA 
Sbjct: 277 VPAYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 374 G--ELKSLQMLFLNENFLRGTIPSS-------LGNLTLLTQLILEVNNLQGKIPPSIG-N 423
              +L+ L++       +   +  +             L  ++     +      +I  N
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483
             N+                  L II       L+   L+  F A V + K+L  L +S 
Sbjct: 396 RPNMTRFR--------------LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFT-RSIPSTLSSLKSITELDLSRNNLSG-HIPQY 541
            +              +E L +     +   +   LS   S+ +L++         +   
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501

Query: 542 LENLSFLSFLNLSY 555
              L  +  L +S 
Sbjct: 502 ASKLETMRSLWMSS 515

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 467 PAEVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSIT 525
              +   +NL  L I +      +    L G   L  L +  +      P        ++
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 558
            L+LS N L     + ++ LS L  L LS N  
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPL-AIGELKSLQMLFLNENFLRGTIPSSLGNLTL 402
                +    NL  L +E+ Q    + L  +  L  L+ L + ++ LR   P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 403 LTQLILEVNNLQGKIPPSI 421
           L++L L  N L+  +    
Sbjct: 82  LSRLNLSFNALE-SLSWKT 99

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL 281
           G  L        S N +   L         L+ L +N N            L +L+ L L
Sbjct: 38  GATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSN 314
             N+L      +L  +  L +   L  L +  N
Sbjct: 96  TNNSL-----VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           + L+  L+     A+  N      LD+        I          + +   DN   +  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
                 L+ +  L ++ N +        + L  L+ L L+ N   
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366
             L L  N+F  ++P  L+N    +T I   +N+IS       +N+  L  L +  N+L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 367 GTIPLAIGELKSLQMLFLNENFLRGTIP-SSLGNLTLLTQLILEVN 411
              P     LKSL++L L+ N +   +P  +  +L+ L+ L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 30/167 (17%)

Query: 414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV--- 470
           Q  + P +     L  L  +         +   ++ +L         +++G  P  V   
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL--------EIISGGLPDSVVED 212

Query: 471 ---GNLKNLVSLDI---SSNMFSGEIPTTL------GGCTSLEYLGMQDNSFTRSIPSTL 518
               +L NL  L +     +                    +L++LG+ D      +    
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 519 SS---LKSITELDLSRNNLSG----HIPQYLENLSFLSFLNLSYNHF 558
                L  +  +D+S   L+      +  +++ +  L F+N+ YN+ 
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTE 333
           Q  + L L  N      A  +          +L  ++  +N+   +   +    S  + E
Sbjct: 32  QYTAELRLNNNEFTVLEATGI-----FKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNE 85

Query: 334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI 393
           I   SN++      +   L +L  L + SN++      +   L S+++L L +N +    
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 394 PSSLGNLTLLTQLILEVN 411
           P +   L  L+ L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 250 TNLQGLEINGNLFSG-KVSINFSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTK 305
                L +N N F+  + +  F +L  L ++N   N +     G              + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA---------SG 82

Query: 306 LEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL 365
           +  + L SNR   V       L  ++  +   SN+I+    D    L ++  L +  NQ+
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 366 AGTIPLAIGELKSLQMLFLNEN 387
               P A   L SL  L L  N
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 417 IPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLK 474
           IP  I      L L     N+ +      +   +     ++ S+N +             
Sbjct: 26  IPEHIPQYTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
            +  + ++SN           G  SL+ L ++ N  T     +   L S+  L L  N +
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 535 SGHIPQYLENLSFLSFLNLSYNHF 558
           +   P   + L  LS LNL  N F
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 325 ANLSITMTEIANGSNQISGTIPD-VIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLF 383
            ++     E+   +N+ +      +   L  L  +   +N++      A      +  + 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVP 442
           L  N L          L  L  L+L  N +   +         ++ LL+   N+++ TV 
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 443 R 443
            
Sbjct: 146 P 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN 260
                + ++ N F           LP LR  + S N +T   + +   A+ +  + +  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 261 LFSGKVSINFSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKLEVLDLHSNRFG 317
                    F  L++L  L L  N +      +   L         + + +L L+ N+  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL---------SSVRLLSLYDNQIT 142

Query: 318 GVLPFSLANLS 328
            V P +   L 
Sbjct: 143 TVAPGAFDTLH 153

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 157 QEIDVRGNRLGGRIPSTI-SHVRNLISFNVARNQFSGMIPLIYN-ISSLQYIFIHTNRFH 214
            E+ +  N       + I   +  L   N + N+ + +    +   S +  I + +NR  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 215 GSLPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSR 272
            ++   + +   L +L+   +  N +T    DS    ++++ L +  N  +      F  
Sbjct: 95  -NVQ--HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 273 LQNLSRLNLGEN 284
           L +LS LNL  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 28/157 (17%)

Query: 378 SLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK 436
               L LN N       + +   L  L ++    N +   I    G  +    +      
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNE---- 85

Query: 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEV-GNLKNLVSLDISSNMFSGEIPTTLG 495
                             + L+ N L      ++   L++L +L + SN  +     +  
Sbjct: 86  ------------------ILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126

Query: 496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN 532
           G +S+  L + DN  T   P    +L S++ L+L  N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)

Query: 250 TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTANDLDFITLLTNCTKL 306
                L++  N      +  F  L +L++L LG N L +   G  N L         T L
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL---------TSL 78

Query: 307 EVLDLHSNRFGGVLP---F-SLANLSITMTEIANGSNQISGTIPD-VIANLVNLNALGVE 361
             L+L +N+    LP   F  L  L     E+A  +NQ+  ++PD V   L  L  L + 
Sbjct: 79  TYLNLSTNQL-QSLPNGVFDKLTQL----KELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132

Query: 362 SNQLAGTIPLAIGELKSLQMLFLNEN 387
            NQL          L SLQ ++L++N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
            +   LDL +N    +       L+ ++T++  G N++      V   L +L  L + +N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 364 QLAGTIPLAI-GELKSLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQ 414
           QL  ++P  +  +L  L+ L LN N L+ ++P  +   LT L  L L  N L+
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 57/357 (15%), Positives = 112/357 (31%), Gaps = 62/357 (17%)

Query: 224 NLPNLRYFSISGNNLTGS----LQDSL-SNATNLQGLEINGNLFSGKVSINFSRL----- 273
               +    +S NNL       L  +  +   ++  L ++GN    K S    ++     
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG--GVLPFS--LANLSI 329
            N++ LNL  N L   ++++L   TL      + VLDL  N F       F    +NL  
Sbjct: 80  ANVTSLNLSGNFLSYKSSDEL-VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 330 TMTEIANGSNQISGTIPDVIANL-----VNLNALGVESNQL--AGTIPLA---IGELKSL 379
           ++T +    N +     D +  +      N+N+L +  N L       LA        S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 380 QMLFLNENFLRGTIPSSLG-----NLTLLTQLILEVNNLQGK----IPPSIGNCQNLILL 430
             L L+ N L     + L          +  L L +N L G     +     + ++L  +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI 490
               + +      Q   +                       N++ ++ +D +        
Sbjct: 259 YLDYDIVKNMSKEQCKALGAA------------------FPNIQKIILVDKNGKEIHPSH 300

Query: 491 PTTLGG-----CTSLEYLGMQDNSFT-----RSIPSTLSSLKSITELDLSRNNLSGH 537
              +           +   + +         ++    L+    + E   +   L  H
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 55/323 (17%), Positives = 99/323 (30%), Gaps = 61/323 (18%)

Query: 274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG----GVLPFSLANLSI 329
             ++ L+L  NNL + +  +L           +  L+L  N  G      L   LA +  
Sbjct: 22  HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 330 TMTEIANGSNQISGTIPDVIANLV-----NLNALGVESNQL--AGTIPLA---IGELKSL 379
            +T +    N +S    D +   +      +  L +  N      +            S+
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 380 QMLFLNENFLRGTIPSSLGNL-----TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRK 434
             L L  N L       L  +       +  L L  NNL  K      NC  L       
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK------NCAELA------ 188

Query: 435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGH-----FPAEVGNLKNLVSLDISSNMFSGE 489
            K   ++P  +         LDLS NLL                 ++VSL++  N   G 
Sbjct: 189 -KFLASIPASVTS-------LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 490 ----IPTTLGGCTSLEYLGMQDNSFT-------RSIPSTLSSLKSITELDLSRNNLSG-- 536
               +         L+ + +  +          +++ +   +++ I  +D +   +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 537 --HIPQYLENLSF-LSFLNLSYN 556
              I   +  LS      +L   
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQ 323

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA 366
             L L+ N  G +    L      + ++    NQ++G  P+      ++  L +  N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 367 GTIPLAI-GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
             I   +   L  L+ L L +N +   +P S  +L  LT L L  N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 472 NLKNLVSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
              ++  L + ++  + G++         LE+L   +   T SI + L  L  + +L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 531 RNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
            N +SG +    E    L+ LNLS N  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           +D+   +           ++ LV LD   +   G+I        +LE+L + +     S+
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELV-LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV 64

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 559
            S L  L  + +L+LS N + G +    E L  L+ LNLS N  +
Sbjct: 65  -SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSLQMLFLNENFLRGTIPSS 396
           SN++      V   L  L  L +  NQ+  ++P  +  +L  L +L+L+EN L+ ++P+ 
Sbjct: 37  SNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNG 94

Query: 397 L-GNLTLLTQLILEVNNLQ 414
           +   LT L +L L+ N L+
Sbjct: 95  VFDKLTQLKELALDTNQLK 113

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS 530
             ++NL  L +  N+   +I        +LE L +  N       S +  L ++  L +S
Sbjct: 67  SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMS 123

Query: 531 RNNLS--GHIPQYLENLSFLSFLNLSYN 556
            N ++  G I   L  L  L  L L+ N
Sbjct: 124 NNKITNWGEI-DKLAALDKLEDLLLAGN 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 26/213 (12%)

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF-SLANLSITMTEIAN 336
           + NL + ++      +            ++ +  +++    V     L N+      +A 
Sbjct: 23  KANLKKKSVTDAVTQN--------ELNSIDQIIANNSDIKSVQGIQYLPNV----RYLAL 70

Query: 337 GSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS 396
           G N++   I   +  L NL  L +  NQL         +L +L+ L L EN L+      
Sbjct: 71  GGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 397 LGNLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLL 455
              LT LT L L  N LQ  +P  +     NL  L    N+L  ++P  +   +T    L
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186

Query: 456 DLSDNLL----NGHFPAEVGNLKNLVSLDISSN 484
            L  N L    +G F      L +L  + +  N
Sbjct: 187 RLYQNQLKSVPDGVF----DRLTSLQYIWLHDN 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.8

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.7e-69  Score=581.97  Aligned_cols=558  Identities=31%  Similarity=0.472  Sum_probs=404.2

Q ss_pred             CccCCCCCCCCCCCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCccc---Cc-----------------------ccC
Q 040451            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGV---LS-----------------------PFV   54 (566)
Q Consensus         1 ~~~~~~~~~~~~~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~---~~-----------------------~~l   54 (566)
                      ||+++.||. ++.+|+.+++||+|.||+|.  .++|+.|+|+++.+.+.   ++                       ..+
T Consensus        20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~   96 (768)
T 3rgz_A           20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF   96 (768)
T ss_dssp             HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred             HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence            688899998 99999999999999999998  38999999999988876   33                       467


Q ss_pred             cCCCCCcEEEcCCCCCccccCc--cccCCCCCCEEeCCCccCCCCCCccc-ccCCCCCEEEccCCcccccCCcc---ccC
Q 040451           55 GNLSFPRSINLPNKSFRGEIPH--EVSNLFRLQNLTLTNNYFSGKILTDL-SHCSNVMKFEASNNKLEAEIPVE---IGN  128 (566)
Q Consensus        55 ~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~---~~~  128 (566)
                      +++++|++|+|++|.+.+.+|.  .++++++|++|++++|.+++..+..+ .++++|++|++++|.+.+..+..   +.+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            8888888999988888887887  78888888888888888876666554 67777777777777776555444   445


Q ss_pred             CCCCCEEecccCcCC----------------------CCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecc
Q 040451          129 LLMLQILNIAENHLK----------------------GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA  186 (566)
Q Consensus       129 l~~L~~L~l~~~~i~----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  186 (566)
                      +++|++|++++|.++                      +..|. +.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            555555555544444                      33332 4444444444444444444444444444445555554


Q ss_pred             ccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccc
Q 040451          187 RNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKV  266 (566)
Q Consensus       187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  266 (566)
                      +|.+.+..+.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.++...|..+..+++|++|++++|.+.+..
T Consensus       256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            44444332222 44555555555555555666655544577777777777777667777777777777777777776555


Q ss_pred             ccc-ccCCCCCCEEECCCCcCCCCCCCChhhh-------------------hhhcC--CCCCCEEEcccCccccccchhH
Q 040451          267 SIN-FSRLQNLSRLNLGENNLGTGTANDLDFI-------------------TLLTN--CTKLEVLDLHSNRFGGVLPFSL  324 (566)
Q Consensus       267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------~~l~~--~~~L~~L~l~~~~~~~~~~~~~  324 (566)
                      +.. +..+++|+.|++++|.+.+..+..+...                   ..+..  +++|++|++++|.+++..|..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            543 6677777777777776654333222100                   01111  4556666666666666666665


Q ss_pred             hhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451          325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT  404 (566)
Q Consensus       325 ~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  404 (566)
                      ... ++++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|+
T Consensus       415 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          415 SNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            554 4677777777777777777777777777777777777767777777777777777777777777777777777888


Q ss_pred             eEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCc----------------
Q 040451          405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPA----------------  468 (566)
Q Consensus       405 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~----------------  468 (566)
                      +|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+..+ +.|++++|.+.+.+|.                
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            88888887777777777777888888888888777777777776665 7788887777655443                


Q ss_pred             ------------------------------------------------------cccCCCCCCEEEccCCcccccCCcCC
Q 040451          469 ------------------------------------------------------EVGNLKNLVSLDISSNMFSGEIPTTL  494 (566)
Q Consensus       469 ------------------------------------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~  494 (566)
                                                                            .+..+++|+.||+++|.+++.+|..+
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                  23445788999999999998999999


Q ss_pred             cCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCCC
Q 040451          495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE  565 (566)
Q Consensus       495 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~  565 (566)
                      +.++.|+.|+|++|.+++.+|..++.+++|+.||+++|++++.+|+.+..+++|++|++++|+++|.+|..
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999964

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-58  Score=500.48  Aligned_cols=513  Identities=29%  Similarity=0.483  Sum_probs=393.7

Q ss_pred             CcEEEEEcCCCCCcccCcccC-cCCCCCcEEEcCCCCCccccCcc---ccCCCCCCEEeCCCccCCCCCCcccccCCCCC
Q 040451           34 QRVTGLDLRQQSVGGVLSPFV-GNLSFPRSINLPNKSFRGEIPHE---VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVM  109 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  109 (566)
                      .++++|++++|.+.+..|..+ .++++|++|+|++|.+.+..+..   +.++++|++|++++|.+++..+  +..+++|+
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~  203 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLE  203 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCC
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCC
Confidence            567778888777776666554 67777777777777776555544   4555555555555555543222  24455555


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC----------------------CEEEeeCCccc
Q 040451          110 KFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL----------------------QEIDVRGNRLG  167 (566)
Q Consensus       110 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----------------------~~L~l~~~~~~  167 (566)
                      +|++++|.+.+.+|. ++++++|++|++++|.+++..|..+..+++|                      ++|++++|.++
T Consensus       204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~  282 (768)
T 3rgz_A          204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT  282 (768)
T ss_dssp             EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE
T ss_pred             EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC
Confidence            555555555443333 4555555555555555544444444444444                      45555555444


Q ss_pred             ccCccccccc-Cccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccc
Q 040451          168 GRIPSTISHV-RNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS  245 (566)
Q Consensus       168 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  245 (566)
                      +.+|..+... ++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+....|..
T Consensus       283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~  362 (768)
T 3rgz_A          283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES  362 (768)
T ss_dssp             ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred             CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence            4555555443 66666666666665433 556667777777777777666666553446677777777777766666666


Q ss_pred             cccCC-CCceEecccccccccccccccC--CCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccch
Q 040451          246 LSNAT-NLQGLEINGNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF  322 (566)
Q Consensus       246 l~~l~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  322 (566)
                      +..++ +|+.|++++|.+.+..+..+..  +++|+.|++++|.+.+..+      ..+..+++|++|++++|.+.+..|.
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcccH
Confidence            66665 6777777777776666655554  6778888888887765544      5678899999999999999988888


Q ss_pred             hHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCC
Q 040451          323 SLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTL  402 (566)
Q Consensus       323 ~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  402 (566)
                      .+... ++++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.+|..++.+++
T Consensus       437 ~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          437 SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            88876 59999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             CCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhcc----------------------------------
Q 040451          403 LTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHI----------------------------------  448 (566)
Q Consensus       403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----------------------------------  448 (566)
                      |++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..++..                                  
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999998888766442                                  


Q ss_pred             -----------------------------------CCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcC
Q 040451          449 -----------------------------------ITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       449 -----------------------------------~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  493 (566)
                                                         ...++.|++++|.+.+.+|..++.++.|+.|++++|.+++.+|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                               123478999999999999999999999999999999999999999


Q ss_pred             CcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451          494 LGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       494 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      ++.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|+. ..+.++....+.||+
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence            999999999999999999999999999999999999999999999976 456677778888885

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-54  Score=461.19  Aligned_cols=526  Identities=19%  Similarity=0.192  Sum_probs=349.5

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..+..++++++|++|+|++|.+.+..|.+++++++|++|++++|.++...+..|..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            68999999999999877788999999999999999999778888999999999999999998555557999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCccccc--ccCccceeeccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS--HVRNLISFNVARNQFS  191 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~  191 (566)
                      ++|.+.+..+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|+.|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999866667899999999999999999877788888999999999999988866655544  4578899999888776


Q ss_pred             cch-hhhhCC---------------------------CCCcEEEcccCcCcccCCccccCCC--CCccEEEccCCccccc
Q 040451          192 GMI-PLIYNI---------------------------SSLQYIFIHTNRFHGSLPLDNGVNL--PNLRYFSISGNNLTGS  241 (566)
Q Consensus       192 ~~~-~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~  241 (566)
                      +.. ..+..+                           ++|+.|++++|.+.+..+..+. .+  ++|++|++++|.+...
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence            554 222222                           4566666666666644444333 33  3477777777777766


Q ss_pred             cccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC-CChh--hhhhhcCCCCCCEEEcccCcccc
Q 040451          242 LQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA-NDLD--FITLLTNCTKLEVLDLHSNRFGG  318 (566)
Q Consensus       242 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~--~~~~l~~~~~L~~L~l~~~~~~~  318 (566)
                      .+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++....... ..+.  ....+..+++|++|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            66667777777777777777766666666666666666665543221000 0000  00123445555555555555544


Q ss_pred             ccchhHhhcc---------------------------ccccEEEccccCccCccchhhhccCCCCEEecCCccccccch-
Q 040451          319 VLPFSLANLS---------------------------ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP-  370 (566)
Q Consensus       319 ~~~~~~~~~~---------------------------~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-  370 (566)
                      ..+..+...+                           ..++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+ 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            4333333321                           245555555565555555566666666666666666654333 


Q ss_pred             hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce--ecCCccccCCCCCcEEEccCCcccccCchhhhcc
Q 040451          371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ--GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHI  448 (566)
Q Consensus       371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  448 (566)
                      ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+++|+.|++++|.+.+..+..+..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            45556666666666666665555556666666666666666654  3455666666777777777776663333333333


Q ss_pred             CCcCcEEEccCCcceecCC--------ccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCC
Q 040451          449 ITLPVLLDLSDNLLNGHFP--------AEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS  520 (566)
Q Consensus       449 ~~~l~~L~l~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  520 (566)
                      ..+ +.|++++|.+.+..+        ..+..+++|+.|++++|.++...+..|.++++|++|++++|+++...+..|..
T Consensus       504 ~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          504 EKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             TTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            333 667777776654321        12566667777777777776333345667777777777777777555555666


Q ss_pred             CCCCCEEeCCCCcccccCCccCc-CCCCCCeeeCCCCcCccc
Q 040451          521 LKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       521 l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~  561 (566)
                      +++|+.|++++|+++...+..+. .+++|+.|++++|++...
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            77777777777777655555554 566777777777765543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.2e-54  Score=453.67  Aligned_cols=515  Identities=18%  Similarity=0.154  Sum_probs=376.6

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      ..+++|++++|.+.+..+..|+++++|++|+|++|.+.+..|++|+++++|++|++++|.++...+..+..+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            45666666666666555666666666666666666666555666666666666666666666555666666666666666


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccc--eeeccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI--SFNVARNQFS  191 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~  191 (566)
                      ++|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+.+..+..++.+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            66666644455566666666666666666642223333466666666666666655555566666666  5666666666


Q ss_pred             cchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCc--cEEEccCC---ccccccccccccCC--CCceEecccccccc
Q 040451          192 GMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNL--RYFSISGN---NLTGSLQDSLSNAT--NLQGLEINGNLFSG  264 (566)
Q Consensus       192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~---~~~~~~~~~l~~l~--~L~~L~l~~~~~~~  264 (566)
                      +..+......+|++|+++++........    .+.++  +.+.+...   ......+..+..+.  +|+.|++++|.+.+
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             ccChhHhhhccccccccCCchhHHHHhh----hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            5554444455666666665542111000    11222  12222111   01111222333332  68899999999887


Q ss_pred             cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc
Q 040451          265 KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT  344 (566)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  344 (566)
                      ..+..+..+++|+.|++++|.+...+.       .+..+++|++|++++|.+.+..+..+... ++++.+++++|.+.+.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCB
T ss_pred             cCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccc
Confidence            777778889999999999998875433       46778899999999999887777666665 5899999999988765


Q ss_pred             cch-hhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCc-c
Q 040451          345 IPD-VIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP-S  420 (566)
Q Consensus       345 ~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~  420 (566)
                      ++. .+..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+. .
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            554 4889999999999999988665  66788999999999999999878888899999999999999999866554 4


Q ss_pred             ccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec---CCccccCCCCCCEEEccCCcccccCCcCCcCC
Q 040451          421 IGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH---FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGC  497 (566)
Q Consensus       421 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  497 (566)
                      +..+++|+.|++++|.+.+..+..+..++.+ +.|++++|.+.+.   .+..+..+++|++|++++|.+++..|..|..+
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence            8889999999999999986667766666665 9999999998752   33568899999999999999998888999999


Q ss_pred             CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451          498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV  562 (566)
Q Consensus       498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  562 (566)
                      ++|++|++++|++++..|..+..+++| .|++++|++++..|+.+..+++|+.|++++|++..+-
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999999999999999899999999999 9999999999888888899999999999999987643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.1e-53  Score=452.01  Aligned_cols=499  Identities=20%  Similarity=0.222  Sum_probs=373.8

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..|..++++++|++|+|++|.+....+..|+++++|++|++++|.++...+..|.++++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            67899999999998888888999999999999999988333346889999999999999988666678999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhc--CCCCCCEEEeeCCcccccCccccccc--------------
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG--NLSALQEIDVRGNRLGGRIPSTISHV--------------  177 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l--------------  177 (566)
                      ++|.+.+..+..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..+..+..+              
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~  208 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG  208 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence            99998877778888999999999999988865555543  45788888888888776655555443              


Q ss_pred             -------------Cccceeeccccccccch-hhhhCCC--CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc
Q 040451          178 -------------RNLISFNVARNQFSGMI-PLIYNIS--SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS  241 (566)
Q Consensus       178 -------------~~L~~L~l~~~~~~~~~-~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  241 (566)
                                   ++|+.|++++|.+.+.. ..+..++  +|++|++++|.+.+..+..+. .+++|++|++++|.+...
T Consensus       209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred             hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence                         33444555555544433 3333333  366666666666533333332 566666666666666555


Q ss_pred             cccccccCCC---------------------------------CceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451          242 LQDSLSNATN---------------------------------LQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       242 ~~~~l~~l~~---------------------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      .+..+.++++                                 |++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~  367 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL  367 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred             ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence            4444444444                                 4555555555444444445555555555555544321


Q ss_pred             CCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccc-hhhhccCCCCEEecCCccccc
Q 040451          289 GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIP-DVIANLVNLNALGVESNQLAG  367 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  367 (566)
                      .......+ . -...++|+.|++++|.+.+..+..+... ++++.|++++|.+.+.++ ..+.++++|+.|++++|.+.+
T Consensus       368 ~~l~~~~f-~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  444 (680)
T 1ziw_A          368 RTLTNETF-V-SLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ  444 (680)
T ss_dssp             CEECTTTT-G-GGTTSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred             hhcchhhh-c-ccccCcCceEECCCCCCCeEChhhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence            11100000 0 0112567777778888777767666654 699999999999987665 678999999999999999998


Q ss_pred             cchhhccCCCCCCEEEccCCccc--ccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCch--
Q 040451          368 TIPLAIGELKSLQMLFLNENFLR--GTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR--  443 (566)
Q Consensus       368 ~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--  443 (566)
                      ..+..+..+++|++|++++|.+.  +..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+....  
T Consensus       445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  524 (680)
T 1ziw_A          445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN  524 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred             eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence            88889999999999999999886  46788899999999999999999987778899999999999999998743211  


Q ss_pred             ------hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcC
Q 040451          444 ------QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST  517 (566)
Q Consensus       444 ------~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  517 (566)
                            .+..+. .++.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|++++|++++..+..
T Consensus       525 ~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          525 PGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             TTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             cCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                  133444 4599999999999665567999999999999999999666777899999999999999999876666


Q ss_pred             CC-CCCCCCEEeCCCCccccc
Q 040451          518 LS-SLKSITELDLSRNNLSGH  537 (566)
Q Consensus       518 l~-~l~~L~~L~l~~n~~~~~  537 (566)
                      +. .+++|+.|++++|++...
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBC
T ss_pred             hcccccccCEEEccCCCcccC
Confidence            76 689999999999999853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-53  Score=446.55  Aligned_cols=490  Identities=17%  Similarity=0.154  Sum_probs=404.3

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..|..|+++++|++|+|++|.+.+..|..++++++|++|++++|.++...+..+..+++|++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence            68999999999999888999999999999999999999788889999999999999999999766788999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC--EEEeeCCcccccCcccccccCccceeeccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ--EIDVRGNRLGGRIPSTISHVRNLISFNVARNQFS  191 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      ++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+  +|++++|.+.+..+..+. ...|+.|++++|.  
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~--  213 (606)
T 3t6q_A          137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ--  213 (606)
T ss_dssp             CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS--
T ss_pred             CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch--
Confidence            99999864434566699999999999999977788899999999  899999999977666654 4789999999886  


Q ss_pred             cchhhhhCCCCCcEEEcccCcCcc----cCCccccCCC--CCccEEEccCCccccccccccccCCCCceEeccccccccc
Q 040451          192 GMIPLIYNISSLQYIFIHTNRFHG----SLPLDNGVNL--PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGK  265 (566)
Q Consensus       192 ~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  265 (566)
                      .....+..+..+....+....+.+    .++...+..+  .+|+++++++|.++...+..+..+++|++|++++|.++ .
T Consensus       214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  292 (606)
T 3t6q_A          214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E  292 (606)
T ss_dssp             CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred             hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence            223344444444433332222211    1222222122  26888888888888777777888888888888888887 5


Q ss_pred             ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchh-HhhccccccEEEccccCccCc
Q 040451          266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSITMTEIANGSNQISGT  344 (566)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~  344 (566)
                      .|..+..+++|+.|++++|.+....+      ..+..+++|++|++++|.+.+..+.. +.. .++++++++++|.+.+.
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGNTKRLELGTGCLEN-LENLRELDLSHDDIETS  365 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSCSSCCBCCSSTTTT-CTTCCEEECCSSCCCEE
T ss_pred             CChhhcccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCCCcccccchhhhhc-cCcCCEEECCCCccccc
Confidence            66677888888888888888776544      45667888888888888877555443 443 36888888888888765


Q ss_pred             c--chhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCc-cccCCCCCCeEecccCcceecCCccc
Q 040451          345 I--PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-SLGNLTLLTQLILEVNNLQGKIPPSI  421 (566)
Q Consensus       345 ~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~  421 (566)
                      .  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  445 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF  445 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence            5  67788999999999999999988888999999999999999998866554 48899999999999999998888889


Q ss_pred             cCCCCCcEEEccCCcccccC---chhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCC
Q 040451          422 GNCQNLILLTTRKNKLSGTV---PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCT  498 (566)
Q Consensus       422 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  498 (566)
                      ..+++|++|++++|.+.+..   +..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+++..|+.+..++
T Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             hCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            99999999999999987532   2345555554 9999999999988889999999999999999999988899999999


Q ss_pred             CCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451          499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       499 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      .| +|++++|++++..|..+..+++|+.|++++|++..
T Consensus       525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            99 99999999998888888999999999999999975

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-52  Score=444.24  Aligned_cols=512  Identities=19%  Similarity=0.171  Sum_probs=418.6

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..+..++++++|++|+|++|.+++..|.+|.++++|++|++++|.++...|..|.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            68999999999998888888999999999999999998767888999999999999999998777888999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCccc----eeecccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVARN  188 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~  188 (566)
                      ++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999986666789999999999999999875 4688999999999999999999887788787777665    7999999


Q ss_pred             ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc------cccccccCC--CCceEec-cc
Q 040451          189 QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS------LQDSLSNAT--NLQGLEI-NG  259 (566)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~l~~l~--~L~~L~l-~~  259 (566)
                      .+...++......+|++|++++|.+.+.........++.++.+++....+...      ....+..+.  .++.+++ ..
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            99887766566668999999999876433333334778888877754433211      111122221  3556666 45


Q ss_pred             ccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451          260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN  339 (566)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~  339 (566)
                      +.+.+..+. +..+++|+.++++++.+...+        .+..+++|++|++++|.+ +..|. +  ..+.++.+++++|
T Consensus       272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n  338 (606)
T 3vq2_A          272 NDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMN  338 (606)
T ss_dssp             TTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESC
T ss_pred             ccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCC
Confidence            566655555 788899999999998875543        356778999999999988 45553 3  4468999999988


Q ss_pred             CccCccchhhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 040451          340 QISGTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  417 (566)
                      ...+..  .+..+++|+.|++++|.+++..  +..+..+++|++|++++|.++ .++..+..+++|++|++++|++.+..
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCcc
Confidence            655443  5678899999999999988663  678889999999999999987 46678889999999999999998776


Q ss_pred             C-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee-cCCccccCCCCCCEEEccCCcccccCCcCCc
Q 040451          418 P-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       418 ~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  495 (566)
                      + ..+..+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+.
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence            6 678899999999999999987777777777666 999999999987 4678899999999999999999988888899


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCcCcccCC
Q 040451          496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       496 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~p  563 (566)
                      .+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++...-|
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999999999888999999999999999999998 6666688886 69999999998876443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.9e-50  Score=423.73  Aligned_cols=504  Identities=17%  Similarity=0.161  Sum_probs=418.9

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      +++.++++++. +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.
T Consensus        15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            57888888874 555444  889999999999997777789999999999999999997778889999999999999999


Q ss_pred             ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccch-h
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMI-P  195 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~  195 (566)
                      +.+..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.. .
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            997779999999999999999999996666889999999999999999975 56889999999999999999998765 3


Q ss_pred             hhhCCCC----CcEEEcccCcCcccCCccccCCCCCccEEEccCCccc-cccccccccCCCCceEeccccccccc-----
Q 040451          196 LIYNISS----LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINGNLFSGK-----  265 (566)
Q Consensus       196 ~l~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~-----  265 (566)
                      .+..+++    +.++++++|.+. .++...+ ...+|+++++++|.+. ...+..+..++.++.+++..+.+...     
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~  249 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI  249 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             hhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence            4444444    458999999998 5555555 3448999999999876 45667788899999888865543211     


Q ss_pred             -ccccccCCC--CCCEEEC-CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCc
Q 040451          266 -VSINFSRLQ--NLSRLNL-GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI  341 (566)
Q Consensus       266 -~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  341 (566)
                       ....+..+.  .++.+.+ ..+.+.+..+       .+..+++|+.++++++.+....  .+.. .++++++++++|.+
T Consensus       250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~l~--~l~~-~~~L~~L~l~~n~l  319 (606)
T 3vq2_A          250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKYLE--DVPK-HFKWQSLSIIRCQL  319 (606)
T ss_dssp             CCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCCCC--CCCT-TCCCSEEEEESCCC
T ss_pred             cChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchhhh--hccc-cccCCEEEcccccC
Confidence             111122222  3555666 4444443322       2678899999999999986443  3433 35899999999999


Q ss_pred             cCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCccccc--CCccccCCCCCCeEecccCcceecCCc
Q 040451          342 SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQGKIPP  419 (566)
Q Consensus       342 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~  419 (566)
                       +.+| .+ .+++|+.|++++|......  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.+ ++.
T Consensus       320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~  393 (606)
T 3vq2_A          320 -KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA  393 (606)
T ss_dssp             -SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred             -cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence             5777 44 9999999999999654433  677899999999999998855  37888999999999999999984 568


Q ss_pred             cccCCCCCcEEEccCCcccccCc-hhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccc-cCCcCCcCC
Q 040451          420 SIGNCQNLILLTTRKNKLSGTVP-RQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG-EIPTTLGGC  497 (566)
Q Consensus       420 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~  497 (566)
                      .+..+++|+.|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT  472 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence            89999999999999999987666 34445554 4999999999999889999999999999999999986 478889999


Q ss_pred             CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451          498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  564 (566)
Q Consensus       498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~  564 (566)
                      ++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|+|++|+++ .+|.
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            99999999999999988999999999999999999999888999999999999999999998 5654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=433.74  Aligned_cols=518  Identities=19%  Similarity=0.183  Sum_probs=424.7

Q ss_pred             CCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc-CccccCCCCCCEEeCCCccCCCCCC
Q 040451           21 LCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI-PHEVSNLFRLQNLTLTNNYFSGKIL   99 (566)
Q Consensus        21 ~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~   99 (566)
                      .|.|..+.+  ...++++|+|++|.+.+..+..+.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+....|
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            356777766  3378999999999999888999999999999999999766566 7789999999999999999998889


Q ss_pred             cccccCCCCCEEEccCCcccccCCcc--ccCCCCCCEEecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccc
Q 040451          100 TDLSHCSNVMKFEASNNKLEAEIPVE--IGNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISH  176 (566)
Q Consensus       100 ~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  176 (566)
                      ..|..+++|++|++++|.+.+..+..  ++++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            99999999999999999998766655  8999999999999999986544 57899999999999999998888888888


Q ss_pred             c--Cccceeeccccccccch-hhhhCCC------CCcEEEcccCcCcccCCccccC--CCCCccEEEccCC---------
Q 040451          177 V--RNLISFNVARNQFSGMI-PLIYNIS------SLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGN---------  236 (566)
Q Consensus       177 l--~~L~~L~l~~~~~~~~~-~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~---------  236 (566)
                      +  ++|+.|++++|.+.... ..+..++      .|++|++++|.+.+.++..+..  ....++.+.+..+         
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            7  89999999999887654 3333343      4999999999888777665542  2356788887633         


Q ss_pred             ccccccccccccC--CCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451          237 NLTGSLQDSLSNA--TNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN  314 (566)
Q Consensus       237 ~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  314 (566)
                      .+.......+.++  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+      ..+..+++|++|++++|
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCC
Confidence            2222333344444  689999999999988888889999999999999999887666      46778899999999999


Q ss_pred             ccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCC
Q 040451          315 RFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP  394 (566)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  394 (566)
                      .+.+..+..+..+ ++++.|++++|.+.+..+..+..+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|
T Consensus       325 ~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~  397 (844)
T 3j0a_A          325 LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP  397 (844)
T ss_dssp             CCSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred             CCCccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence            9987777777665 5899999999999887777889999999999999988743     34889999999999988 445


Q ss_pred             ccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee-----cCCc
Q 040451          395 SSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG-----HFPA  468 (566)
Q Consensus       395 ~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~-----~~~~  468 (566)
                      ..   ..+++.+++++|++++... ..+..+++|+.|++++|++.+..+.......+.++.|++++|.+..     ..+.
T Consensus       398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence            33   5789999999999885322 2356899999999999998854443333334556999999999863     3345


Q ss_pred             cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCC
Q 040451          469 EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL  548 (566)
Q Consensus       469 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  548 (566)
                      .|..+++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..+.  ++|+.|++++|++++..|..+   ++|
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L  549 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSL  549 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSC
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCc
Confidence            688899999999999999988888899999999999999999976666665  899999999999998888765   489


Q ss_pred             CeeeCCCCcCccc
Q 040451          549 SFLNLSYNHFEGK  561 (566)
Q Consensus       549 ~~L~l~~~~l~~~  561 (566)
                      +.|++++|++..+
T Consensus       550 ~~l~l~~Np~~C~  562 (844)
T 3j0a_A          550 SVLDITHNKFICE  562 (844)
T ss_dssp             CEEEEEEECCCCS
T ss_pred             CEEEecCCCcccc
Confidence            9999999987653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-48  Score=408.47  Aligned_cols=492  Identities=20%  Similarity=0.209  Sum_probs=310.9

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..+..+.++++|++|+|++|.+.+..+++|+++++|++|++++|.++...+..|..+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            46777777777777666667777777777777777776555566777777777777777776555566777777777777


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc----ceeecccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVARN  188 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~  188 (566)
                      ++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+..+..+..+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            7777764433357777777777777777664 356777777777777777777766556666666666    66777777


Q ss_pred             ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc------cccccccccCC--CCceEecccc
Q 040451          189 QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT------GSLQDSLSNAT--NLQGLEINGN  260 (566)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~l~--~L~~L~l~~~  260 (566)
                      .+....+......+|++|++++|.............++.++...+....+.      ......+..++  .++.+++.++
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            666555333333366667666653321111111113444444433321111      11111122222  1334444443


Q ss_pred             -cccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451          261 -LFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN  339 (566)
Q Consensus       261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~  339 (566)
                       .+.+..+..+..+++|+.|+++++.+...+.       .+..+ +|++|++++|.+.                      
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~----------------------  317 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG----------------------  317 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS----------------------
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc----------------------
Confidence             3333444445555555555555555443211       22333 5555555555443                      


Q ss_pred             CccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccC--CccccCCCCCCeEecccCcceecC
Q 040451          340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTI--PSSLGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~~~  417 (566)
                          .+|.  ..+++|+.|++++|.+....+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..
T Consensus       318 ----~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          318 ----QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             ----SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             ----ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence                2222  3456666666666665543332  45667777777777665332  455666677777777777666433


Q ss_pred             CccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc-ccCCcCCcC
Q 040451          418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS-GEIPTTLGG  496 (566)
Q Consensus       418 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~  496 (566)
                      +. +..+++|+.|++++|.+.+..+...+...+.++.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..
T Consensus       390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            33 6667777777777777664444222222333477777777777777777888889999999999887 467888888


Q ss_pred             CCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451          497 CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  564 (566)
Q Consensus       497 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~  564 (566)
                      +++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999887788888889999999999998877777788888999999999998887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=418.42  Aligned_cols=504  Identities=19%  Similarity=0.194  Sum_probs=416.5

Q ss_pred             EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCC-CcccccCCCCCEEEccC
Q 040451           37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI-LTDLSHCSNVMKFEASN  115 (566)
Q Consensus        37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~  115 (566)
                      +.++.++++++. +|.   -.+++++|+|++|.+++..+..|.++++|++|++++|.....+ +..|.++++|++|+|++
T Consensus         7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            457778888875 444   4579999999999999778889999999999999999654444 78899999999999999


Q ss_pred             CcccccCCccccCCCCCCEEecccCcCCCCCchh--hcCCCCCCEEEeeCCcccccCc-ccccccCccceeecccccccc
Q 040451          116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPAS--IGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQFSG  192 (566)
Q Consensus       116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      |.+.+..|.+|+++++|++|++++|.+++..+..  +.++++|++|++++|.+.+..+ ..++++++|+.|++++|.+.+
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999888999999999999999999998766665  8999999999999999986544 578999999999999999877


Q ss_pred             ch-hhhhCC--CCCcEEEcccCcCcccCCccccCCCC------CccEEEccCCcccccccccccc---CCCCceEecccc
Q 040451          193 MI-PLIYNI--SSLQYIFIHTNRFHGSLPLDNGVNLP------NLRYFSISGNNLTGSLQDSLSN---ATNLQGLEINGN  260 (566)
Q Consensus       193 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~~~  260 (566)
                      .. ..+..+  ++|+.|+++.|.+.+..+..+. .++      .|+.|++++|.+....+..+..   ...++.+.+..+
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            65 555555  8999999999999877776554 444      3999999999887666555543   256778877633


Q ss_pred             c---------ccccccccccCC--CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccc
Q 040451          261 L---------FSGKVSINFSRL--QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSI  329 (566)
Q Consensus       261 ~---------~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  329 (566)
                      .         +.+.....+..+  ++|+.|++++|.+....+      ..+..+++|+.|++++|.+.+..+..+..+ +
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~  314 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D  314 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence            2         222233334443  789999999999877655      467789999999999999998878777765 5


Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      +++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++ ++    .+++|+.|+++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~  389 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS  389 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence            99999999999998888899999999999999999988777789999999999999999873 22    38899999999


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchh-hhccCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQ-LLHIITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~  487 (566)
                      +|+++ .+|..   ...++.+++++|.+.+..... +..++. ++.|++++|.+.+..+. .+..+++|+.|++++|.+.
T Consensus       390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence            99998 44433   568999999999998533222 334444 49999999999865433 4567899999999999997


Q ss_pred             c-----cCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451          488 G-----EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV  562 (566)
Q Consensus       488 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  562 (566)
                      .     ..+..|.++++|++|+|++|.+++..|..|..+++|+.|++++|.++...+..+.  ++|+.|+|++|++.+..
T Consensus       465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~  542 (844)
T 3j0a_A          465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN  542 (844)
T ss_dssp             SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred             cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence            3     3446688999999999999999988888899999999999999999977777665  89999999999999987


Q ss_pred             CC
Q 040451          563 PI  564 (566)
Q Consensus       563 p~  564 (566)
                      |.
T Consensus       543 ~~  544 (844)
T 3j0a_A          543 PD  544 (844)
T ss_dssp             SC
T ss_pred             hh
Confidence            75

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-48  Score=419.24  Aligned_cols=484  Identities=18%  Similarity=0.236  Sum_probs=264.4

Q ss_pred             CccCCCCCCCCCCCCCCCC-----CC--CCc------------ccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCc
Q 040451            1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPR   61 (566)
Q Consensus         1 ~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~   61 (566)
                      ||+++.+|     +|+.+.     ++  |.|            .||.|... ++|+.|+|+++++.|.+|+.++++++|+
T Consensus       277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~  350 (876)
T 4ecn_A          277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELK  350 (876)
T ss_dssp             HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred             HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccce
Confidence            45667676     898765     55  999            99999864 8999999999999999999999999999


Q ss_pred             EEEc-CCCCCccccCccccCCC-CCC-----EE---------eCC-CccCCC-----------CCCcccccCCCCCEEEc
Q 040451           62 SINL-PNKSFRGEIPHEVSNLF-RLQ-----NL---------TLT-NNYFSG-----------KILTDLSHCSNVMKFEA  113 (566)
Q Consensus        62 ~L~L-~~~~~~~~~~~~~~~l~-~L~-----~L---------~l~-~~~~~~-----------~~~~~~~~l~~L~~L~L  113 (566)
                      +|+| ++|.+.+..+....... .+.     .+         +.. ...+..           ..+........++.+.+
T Consensus       351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l  430 (876)
T 4ecn_A          351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI  430 (876)
T ss_dssp             EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred             EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence            9999 78877655332111000 000     00         000 000000           00000111122222223


Q ss_pred             cC--CcccccCCccccCCCCCCEEecccCcCCC-----------------CCchhhc--CCCCCCEEEeeCCcccccCcc
Q 040451          114 SN--NKLEAEIPVEIGNLLMLQILNIAENHLKG-----------------QLPASIG--NLSALQEIDVRGNRLGGRIPS  172 (566)
Q Consensus       114 ~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~  172 (566)
                      ..  |.+++ +|..++++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|.
T Consensus       431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred             ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence            22  44443 55556666666666666666554                 2555555  666666666666666556666


Q ss_pred             cccccCccceeeccccc-ccc--chhhhh-------CCCCCcEEEcccCcCcccCCc--cccCCCCCccEEEccCCcccc
Q 040451          173 TISHVRNLISFNVARNQ-FSG--MIPLIY-------NISSLQYIFIHTNRFHGSLPL--DNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       173 ~l~~l~~L~~L~l~~~~-~~~--~~~~l~-------~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  240 (566)
                      .+.++++|+.|++++|. +.+  .+..+.       .+++|++|++++|.+. .+|.  .+. .+++|+.|++++|.+. 
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-
Confidence            66666666666666665 543  222222       3346777777777766 6665  343 6677777777777766 


Q ss_pred             ccccccccCCCCceEecccccccccccccccCCCC-CCEEECCCCcCCCCCCCChhhhhhhcCC--CCCCEEEcccCccc
Q 040451          241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTANDLDFITLLTNC--TKLEVLDLHSNRFG  317 (566)
Q Consensus       241 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~  317 (566)
                      ..| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+...+.       .+...  ++|+.|++++|.+.
T Consensus       587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred             cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhccccCCCCEEECcCCcCC
Confidence            445 5666777777777777766 55555666666 7777777777653221       22222  33666676666665


Q ss_pred             cccchhHhhccccccEEEccccCccCccchhhh--ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCc
Q 040451          318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIA--NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS  395 (566)
Q Consensus       318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  395 (566)
                      +..|..                      +..+.  .+++|+.|++++|.++......+..+++|++|++++|.+. .+|.
T Consensus       658 g~ip~l----------------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          658 SEGRNI----------------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             TTSSSC----------------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             Cccccc----------------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            433211                      00111  1234555555555554322222334555555555555554 3332


Q ss_pred             cccC--------CCCCCeEecccCcceecCCcccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec
Q 040451          396 SLGN--------LTLLTQLILEVNNLQGKIPPSIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH  465 (566)
Q Consensus       396 ~~~~--------l~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      .+..        +++|++|++++|+++ .+|..+.  .+++|+.|++++|.+.                         + 
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~-------------------------~-  767 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-------------------------S-  767 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS-------------------------S-
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC-------------------------c-
Confidence            2221        114444444444444 3333333  4444444444444443                         1 


Q ss_pred             CCccccCCCCCCEEEccC------CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451          466 FPAEVGNLKNLVSLDISS------NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       466 ~~~~l~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      +|..+..+++|+.|++++      |.+.+.+|..+..+++|++|+|++|++. .+|..+.  ++|+.|+|++|++....+
T Consensus       768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccCh
Confidence            223334444444444433      5555566666666667777777777663 5555543  567777777777665554


Q ss_pred             ccCcCCCCCCeeeCCCC
Q 040451          540 QYLENLSFLSFLNLSYN  556 (566)
Q Consensus       540 ~~l~~~~~L~~L~l~~~  556 (566)
                      ..+.....+..+.|.+|
T Consensus       845 ~~~~~~~~~~~~~L~~n  861 (876)
T 4ecn_A          845 TSVCPYIEAGMYVLLYD  861 (876)
T ss_dssp             GGGHHHHHTTCCEEECC
T ss_pred             HHccccccchheeecCC
Confidence            44433333444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-49  Score=416.57  Aligned_cols=463  Identities=20%  Similarity=0.302  Sum_probs=265.1

Q ss_pred             CCCCCCCCCCCCCCCc---ccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc------c------c
Q 040451            9 LGVTSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR------G------E   73 (566)
Q Consensus         9 ~~~~~~w~~~~~~c~w---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------~------~   73 (566)
                      -+...+|+.+.++|.|   .||+|... ++|+.|+|+++++.|.+|+.++++++|++|+|++|.+.      +      .
T Consensus        54 ~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~  132 (636)
T 4eco_A           54 TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN  132 (636)
T ss_dssp             ----CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTT
T ss_pred             CccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccC
Confidence            3445589999999999   99999876 89999999999999999999999999999999999752      1      1


Q ss_pred             cCccccCCCCCCEEeCCCccCCCCCCccccc-------------------CCCCCEEEcc--CCcccccCCccccCCCCC
Q 040451           74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSH-------------------CSNVMKFEAS--NNKLEAEIPVEIGNLLML  132 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~L~--~~~~~~~~~~~~~~l~~L  132 (566)
                      +|...  +..|+ ++++++.+....+..+..                   ...++.+.+.  +|.+++ +|..++++++|
T Consensus       133 ~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L  208 (636)
T 4eco_A          133 MSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKL  208 (636)
T ss_dssp             CCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTC
T ss_pred             chHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCC
Confidence            22211  22333 444444333333322220                   1112222221  345554 56666666666


Q ss_pred             CEEecccCcCCCC-----------------Cchhhc--CCCCCCEEEeeCCcccccCcccccccCccceeeccccc-ccc
Q 040451          133 QILNIAENHLKGQ-----------------LPASIG--NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQ-FSG  192 (566)
Q Consensus       133 ~~L~l~~~~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~  192 (566)
                      ++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+
T Consensus       209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence            6666666666643                 666666  66666666666666666666666666666666666665 554


Q ss_pred             --chhhhhCC------CCCcEEEcccCcCcccCCc--cccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451          193 --MIPLIYNI------SSLQYIFIHTNRFHGSLPL--DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF  262 (566)
Q Consensus       193 --~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  262 (566)
                        .+..+..+      ++|++|++++|.+. .+|.  .+. .+++|++|++++|.+.+..| .+..+++|+.|++++|.+
T Consensus       289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred             ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence              33444443      66777777776666 5665  343 66677777777776665555 566667777777777766


Q ss_pred             cccccccccCCCC-CCEEECCCCcCCCCCCCChhhhhhhcC--CCCCCEEEcccCccccccchhHhhccccccEEEcccc
Q 040451          263 SGKVSINFSRLQN-LSRLNLGENNLGTGTANDLDFITLLTN--CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSN  339 (566)
Q Consensus       263 ~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~  339 (566)
                      . ..|..+..+++ |+.|++++|.+...+.       .+..  +++|++|++++|.+.+..|..+....           
T Consensus       366 ~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-----------  426 (636)
T 4eco_A          366 T-EIPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-----------  426 (636)
T ss_dssp             E-ECCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-----------
T ss_pred             c-cccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCCCcchhhhcccc-----------
Confidence            6 55555666666 7777777777653222       2222  34677777777777655444332100           


Q ss_pred             CccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcc-ccCC-------CCCCeEecccC
Q 040451          340 QISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-LGNL-------TLLTQLILEVN  411 (566)
Q Consensus       340 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l-------~~L~~L~l~~~  411 (566)
                             .....+++|+.|++++|.++...+..+..+++|++|++++|.++ .+|.. +...       ++|++|++++|
T Consensus       427 -------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          427 -------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             -------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             -------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence                   00012334555555555555333333344555555555555555 33222 1111       25666666666


Q ss_pred             cceecCCcccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEc------cC
Q 040451          412 NLQGKIPPSIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI------SS  483 (566)
Q Consensus       412 ~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l------~~  483 (566)
                      +++ .+|..+.  .+++|+.|++++|++.+ +|..                         +..+++|+.|++      ++
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-------------------------~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-------------------------PLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-------------------------GGGCSSCCEEECCSCBCTTC
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh-------------------------hhcCCCCCEEECCCCccccc
Confidence            655 4444444  55555555555555542 2222                         233333444443      34


Q ss_pred             CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451          484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       484 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      |.+.+.+|..+..+++|++|++++|++. .+|..+.  ++|+.|++++|++..
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            4455455555555666666666666653 4444443  566666666665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-47  Score=400.63  Aligned_cols=467  Identities=17%  Similarity=0.183  Sum_probs=271.9

Q ss_pred             cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEcc
Q 040451           35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS  114 (566)
Q Consensus        35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  114 (566)
                      ++++|++++|.+.+..+..++++++|++|+|++|.+.+..|+++.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            56666666666665555566666666666666666665455556666666666666666664444446666666666666


Q ss_pred             CCcccc-cCCccccCCCCCCEEecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451          115 NNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG  192 (566)
Q Consensus       115 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      +|.+.+ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..|..+.++++|+.|+++.|.+..
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            666653 234456666666666666665322333 455666666666666666665566666666666666666665554


Q ss_pred             chhh-hhCCCCCcEEEcccCcCcccC--CccccCCCCCccEEEccCCccccccc----cccccCCCCceEeccccccccc
Q 040451          193 MIPL-IYNISSLQYIFIHTNRFHGSL--PLDNGVNLPNLRYFSISGNNLTGSLQ----DSLSNATNLQGLEINGNLFSGK  265 (566)
Q Consensus       193 ~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~  265 (566)
                      .+.. +..+++|++|++++|.+.+..  +......+++|+.|+++++.+++..+    ..+..+++|+.+++++|.+.+ 
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~-  265 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-  265 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC-
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc-
Confidence            4422 234566666666666655321  12222245556666666655543222    122344555555555554432 


Q ss_pred             ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc----chhHhhccccccEEEccccCc
Q 040451          266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL----PFSLANLSITMTEIANGSNQI  341 (566)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~  341 (566)
                                             ...........+..+++++.+.+.++.+....    ...+......++++++++|.+
T Consensus       266 -----------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          266 -----------------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             -----------------------CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred             -----------------------cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence                                   11100000122344556666666665543211    011122234677777777766


Q ss_pred             cCccchhh-hccCCCCEEecCCccccccchh---hccCCCCCCEEEccCCcccccCC--ccccCCCCCCeEecccCccee
Q 040451          342 SGTIPDVI-ANLVNLNALGVESNQLAGTIPL---AIGELKSLQMLFLNENFLRGTIP--SSLGNLTLLTQLILEVNNLQG  415 (566)
Q Consensus       342 ~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~  415 (566)
                      . .+|..+ ..+++|+.|++++|.+++..+.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ 
T Consensus       323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  400 (549)
T 2z81_A          323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-  400 (549)
T ss_dssp             C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred             c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence            5 445444 5688888888888888765532   36677888888888888874322  45777888888888888887 


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCc
Q 040451          416 KIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       416 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  495 (566)
                      .+|..+..+++|++|++++|.+. .++..+   ++.++.|++++|++.+.    ...+++|++|++++|.++ .+|. ..
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             cCChhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence            66777777888888888888876 333322   12346666666666532    235566666666666665 4444 34


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccccc
Q 040451          496 GCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       496 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                      .+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            556666666666666655555566666666666666666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.3e-45  Score=379.38  Aligned_cols=444  Identities=16%  Similarity=0.158  Sum_probs=334.9

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCC-CCCcccccCCCCCEEE
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSG-KILTDLSHCSNVMKFE  112 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~  112 (566)
                      .++++|++++|.+.+..+..++++++|++|+|++|.+.+..+..++++++|++|++++|.++. ..+..+..+++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            689999999999998888999999999999999999996666679999999999999999985 3567899999999999


Q ss_pred             ccCCcccccCC-ccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCccc-ccccCccceeecccccc
Q 040451          113 ASNNKLEAEIP-VEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST-ISHVRNLISFNVARNQF  190 (566)
Q Consensus       113 L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~  190 (566)
                      +++|...+.++ ..++++++|++|++++|.+++..|..+..+++|++|++++|.+. ..+.. +..+++|+.|++++|.+
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence            99998544554 67999999999999999999888999999999999999999876 34443 35689999999999998


Q ss_pred             ccch----hhhhCCCCCcEEEcccCcCcccCCccc---cCCCCCccEEEccCCcccccc------ccccccCCCCceEec
Q 040451          191 SGMI----PLIYNISSLQYIFIHTNRFHGSLPLDN---GVNLPNLRYFSISGNNLTGSL------QDSLSNATNLQGLEI  257 (566)
Q Consensus       191 ~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l  257 (566)
                      .+..    .....+++|+.|+++++.+.+..+..+   ...+++|+.+++++|.+....      ...+..+++++.|++
T Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  288 (549)
T 2z81_A          209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI  288 (549)
T ss_dssp             TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred             ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence            8753    333467899999999998775433221   136789999999999876431      112344556666666


Q ss_pred             ccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEcc
Q 040451          258 NGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANG  337 (566)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~  337 (566)
                      .++.+.....  +..+                       .......++|++|++++|.+. ..|..+....+++++|+++
T Consensus       289 ~~~~i~~~~~--~~~l-----------------------~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          289 RRLHIPQFYL--FYDL-----------------------STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ESCBCSCGGG--SCCC-----------------------CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccchhhh--cccc-----------------------hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence            5554331110  0000                       011222345666666666554 3333333223466666666


Q ss_pred             ccCccCccc---hhhhccCCCCEEecCCccccccch--hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 040451          338 SNQISGTIP---DVIANLVNLNALGVESNQLAGTIP--LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNN  412 (566)
Q Consensus       338 ~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  412 (566)
                      +|.+.+..+   ..++.+++|+.|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence            666655443   236678889999999998875532  45788899999999999888 677788888999999999998


Q ss_pred             ceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCc
Q 040451          413 LQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPT  492 (566)
Q Consensus       413 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  492 (566)
                      ++ .++..+  .++|++|++++|++++. +   ..++ .++.|++++|++. .+|. ...+++|+.|++++|.+++..+.
T Consensus       422 l~-~l~~~~--~~~L~~L~Ls~N~l~~~-~---~~l~-~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~  491 (549)
T 2z81_A          422 IR-VVKTCI--PQTLEVLDVSNNNLDSF-S---LFLP-RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDG  491 (549)
T ss_dssp             CS-CCCTTS--CTTCSEEECCSSCCSCC-C---CCCT-TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred             cc-cccchh--cCCceEEECCCCChhhh-c---ccCC-hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHH
Confidence            87 333332  36899999999988743 2   2333 4489999999998 4554 46789999999999999987888


Q ss_pred             CCcCCCCCcEEeCCCCcccccCC
Q 040451          493 TLGGCTSLEYLGMQDNSFTRSIP  515 (566)
Q Consensus       493 ~~~~~~~L~~L~l~~~~~~~~~~  515 (566)
                      .+..+++|++|++++|++.+..|
T Consensus       492 ~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          492 IFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGGCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcCcccCEEEecCCCccCCCc
Confidence            89999999999999999876443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=372.60  Aligned_cols=465  Identities=18%  Similarity=0.187  Sum_probs=338.7

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..+..++++++|++|+|++|.+++..++.|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            68999999999999888889999999999999999999667788999999999999999998655557999999999999


Q ss_pred             cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC----CEEEeeCCcccccCcccccccCccceeecccc
Q 040451          114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL----QEIDVRGNRLGGRIPSTISHVRNLISFNVARN  188 (566)
Q Consensus       114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (566)
                      ++|.+.+ .+|..|+++++|++|++++|.+++..+..+..+++|    ++|++++|.+....+..+... +|+.|++++|
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            9999986 478999999999999999999997777888888888    899999999997777777665 8999999988


Q ss_pred             ccccc--hhhhhCCCCCcEEEcccCcCcc-----cCCccccCCCC--CccEEEccCC-ccccccccccccCCCCceEecc
Q 040451          189 QFSGM--IPLIYNISSLQYIFIHTNRFHG-----SLPLDNGVNLP--NLRYFSISGN-NLTGSLQDSLSNATNLQGLEIN  258 (566)
Q Consensus       189 ~~~~~--~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~  258 (566)
                      .....  ...+..++.++...+....+..     .++...+..++  .++.+++.++ .+....+..+..+++|++|+++
T Consensus       211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence            54432  2566778888776665433221     12222221222  3566777776 6666777888899999999999


Q ss_pred             cccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccc
Q 040451          259 GNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGS  338 (566)
Q Consensus       259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~  338 (566)
                      ++.+. ..+..+..+ +|+.|++++|.+...+.         ..+++|++|++++|.+.+..+.                
T Consensus       291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---------~~l~~L~~L~l~~n~~~~~~~~----------------  343 (570)
T 2z63_A          291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSE----------------  343 (570)
T ss_dssp             SCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---------CBCSSCCEEEEESCBSCCBCCC----------------
T ss_pred             Cccch-hhhhhhccC-CccEEeeccCcccccCc---------ccccccCEEeCcCCcccccccc----------------
Confidence            99987 566677777 99999999998874332         3578899999998876644332                


Q ss_pred             cCccCccchhhhccCCCCEEecCCccccccc--hhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceec
Q 040451          339 NQISGTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK  416 (566)
Q Consensus       339 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  416 (566)
                                 ..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+.
T Consensus       344 -----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          344 -----------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             -----------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESC
T ss_pred             -----------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccc
Confidence                       23444455555544444322  33444455555555555554422 22244455555555555554433


Q ss_pred             CC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcce-ecCCccccCCCCCCEEEccCCcccccCCcCC
Q 040451          417 IP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGEIPTTL  494 (566)
Q Consensus       417 ~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  494 (566)
                      .+ ..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+. +..|..+..+++|++|++++|.+++..|..+
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  490 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  490 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence            32 234445555555555555544344333333333 55555555554 3456678889999999999999997778889


Q ss_pred             cCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451          495 GGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       495 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      ..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            999999999999999998777888999999999999999986544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2e-43  Score=376.49  Aligned_cols=537  Identities=21%  Similarity=0.204  Sum_probs=375.4

Q ss_pred             CCCCCCCCCCCCCC----CCCcc----cCccCCCC---------CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCC
Q 040451            7 DPLGVTSSWNNSIN----LCQWT----GVTCGHRR---------QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKS   69 (566)
Q Consensus         7 ~~~~~~~~w~~~~~----~c~w~----~~~~~~~~---------~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~   69 (566)
                      |+..++..|+.+.+    .|.+.    .+.|....         ..+++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus         8 ~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~   87 (635)
T 4g8a_A            8 DDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE   87 (635)
T ss_dssp             -----------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc
Confidence            45556666664443    45442    34565432         478888888888887777788888888888888888


Q ss_pred             CccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCC-CCch
Q 040451           70 FRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKG-QLPA  148 (566)
Q Consensus        70 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~  148 (566)
                      +++..+++|.++++|++|+|++|.++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.++. ..|.
T Consensus        88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A           88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence            885556678888888888888888876556678888888888888888886555668888888888888888764 3567


Q ss_pred             hhcCCCCCCEEEeeCCcccccCcccccccCccc----eeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCC
Q 040451          149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVN  224 (566)
Q Consensus       149 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  224 (566)
                      .+..+++|++|++++|.+.+..+..+..+.+++    .++++.|.+............++.+++.++.....+....+..
T Consensus       168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~  247 (635)
T 4g8a_A          168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG  247 (635)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred             hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcC
Confidence            778888888888888888877777776655543    5667777776666555555566777777665443333222234


Q ss_pred             CCCccEEEccCCc------cccccccccccCCCCceEeccccccc---ccccccccCCCCCCEEECCCCcCCCCCCCChh
Q 040451          225 LPNLRYFSISGNN------LTGSLQDSLSNATNLQGLEINGNLFS---GKVSINFSRLQNLSRLNLGENNLGTGTANDLD  295 (566)
Q Consensus       225 ~~~L~~L~l~~~~------~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (566)
                      ++.++...+..+.      +.......+.....+....+..+...   ......+....+++.+.+..+.+...      
T Consensus       248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------  321 (635)
T 4g8a_A          248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV------  321 (635)
T ss_dssp             TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC------
T ss_pred             Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc------
Confidence            5555554443221      11122223333444444444433221   12233345567777787777765432      


Q ss_pred             hhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccccc--chhhc
Q 040451          296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT--IPLAI  373 (566)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~  373 (566)
                        ..+.....++.|++.++.+.......    ...++.+.+..+......  ....+++|+.+++++|.+...  .+..+
T Consensus       322 --~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~  393 (635)
T 4g8a_A          322 --KDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD  393 (635)
T ss_dssp             --GGGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred             --cccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccch
Confidence              23455678888888888766443322    246777777777665432  345688899999998877533  34556


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcC
Q 040451          374 GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLP  452 (566)
Q Consensus       374 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l  452 (566)
                      ..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..+..+..... +
T Consensus       394 ~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L  471 (635)
T 4g8a_A          394 FGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-L  471 (635)
T ss_dssp             HSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-C
T ss_pred             hhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh-h
Confidence            67889999999988876 455667788999999999887765443 45778899999999999988555555444444 4


Q ss_pred             cEEEccCCcc-eecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451          453 VLLDLSDNLL-NGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR  531 (566)
Q Consensus       453 ~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  531 (566)
                      +.|++++|.+ ....+..|..+++|+.|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            8999999875 345677889999999999999999988888999999999999999999987788899999999999999


Q ss_pred             CcccccCCccCcCC-CCCCeeeCCCCcCc
Q 040451          532 NNLSGHIPQYLENL-SFLSFLNLSYNHFE  559 (566)
Q Consensus       532 n~~~~~~~~~l~~~-~~L~~L~l~~~~l~  559 (566)
                      |++++..|+.+..+ ++|+.|+|++|++.
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99998888888887 68999999999765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-44  Score=370.67  Aligned_cols=458  Identities=17%  Similarity=0.169  Sum_probs=278.7

Q ss_pred             EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451           37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  116 (566)
                      ++++++++.++ .+|..+.  ++|++|+|++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46899999988 4666565  89999999999998666678899999999999999998777888999999999999999


Q ss_pred             cccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc--ceeecccccc--c
Q 040451          117 KLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVARNQF--S  191 (566)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~  191 (566)
                      +++ .+|..  .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            988 56655  78899999999999885 367889999999999999998864   356677777  8888888887  3


Q ss_pred             cch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCc-------cccccccccccCCCCceEecccccc
Q 040451          192 GMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN-------LTGSLQDSLSNATNLQGLEINGNLF  262 (566)
Q Consensus       192 ~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~  262 (566)
                      ... ..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.       +....+ .+..+++|+.|+++++.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            322 3333333 233566777777766666666677788888888775       443333 566777777777777765


Q ss_pred             cccccccc---cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc-hhHhhccccccEEEccc
Q 040451          263 SGKVSINF---SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLSITMTEIANGS  338 (566)
Q Consensus       263 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~l~l~~  338 (566)
                      .+.....+   ...++|+.|++++|.+.+..+..+. ......+++|+.++++++.+  ..| ..+....          
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~----------  299 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF-DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIF----------  299 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC-CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHH----------
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchh-hcccccCceeEeccccccce--ecchhhhhccc----------
Confidence            53222111   1134666666666665533331100 00014455555555555554  111 1111110          


Q ss_pred             cCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee--c
Q 040451          339 NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG--K  416 (566)
Q Consensus       339 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~  416 (566)
                                  ...+|+.|++++|.+....  ....+++|++|++++|.+++..|..+..+++|++|++++|++++  .
T Consensus       300 ------------~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          300 ------------SNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK  365 (520)
T ss_dssp             ------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred             ------------ccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence                        1134555555555544221  11355556666666666555455555556666666666665553  2


Q ss_pred             CCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcC
Q 040451          417 IPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG  496 (566)
Q Consensus       417 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  496 (566)
                      +|..+..+++|++|++++|.+.+.+|...+...+.++.|++++|.+.+..+..+.  ++|+.|++++|.++ .+|..+..
T Consensus       366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence            3344555566666666655555333333222222224444444444333332222  45566666666555 45554455


Q ss_pred             CCCCcEEeCCCCcccccCCc-CCCCCCCCCEEeCCCCccc
Q 040451          497 CTSLEYLGMQDNSFTRSIPS-TLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       497 ~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~  535 (566)
                      +++|++|++++|+++. +|. .+..+++|+.|++++|++.
T Consensus       443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence            5566666666665553 333 2555556666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7e-44  Score=369.89  Aligned_cols=460  Identities=17%  Similarity=0.190  Sum_probs=347.0

Q ss_pred             cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451           61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  140 (566)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57899999998 7887665  89999999999998766678999999999999999998777889999999999999999


Q ss_pred             cCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccchhhhhCCCCC--cEEEcccCcC--cc
Q 040451          141 HLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL--QYIFIHTNRF--HG  215 (566)
Q Consensus       141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~  215 (566)
                      +++ .+|..  .+++|++|++++|.+.+ ..|..++++++|++|++++|.+..  ..+..+++|  ++|++++|.+  .+
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence            998 56766  88999999999999886 467889999999999999998875  345556666  8888888877  44


Q ss_pred             cCCccccCCCC-CccEEEccCCccccccc-cccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCC
Q 040451          216 SLPLDNGVNLP-NLRYFSISGNNLTGSLQ-DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAND  293 (566)
Q Consensus       216 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (566)
                      ..|..+. .+. +...+++++|.+....+ ..+..+++|+.+++++|.                        ........
T Consensus       155 ~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------~~~~~~~~  209 (520)
T 2z7x_B          155 EDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL------------------------EDNKCSYF  209 (520)
T ss_dssp             CCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC------------------------STTTTHHH
T ss_pred             ccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc------------------------ccccccee
Confidence            4444332 221 12234455554433222 233445555555555543                        10000000


Q ss_pred             hhhhhhhcCCCCCCEEEcccCccccccchhHhh--ccccccEEEccccCccCccchhh-----hccCCCCEEecCCcccc
Q 040451          294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN--LSITMTEIANGSNQISGTIPDVI-----ANLVNLNALGVESNQLA  366 (566)
Q Consensus       294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~  366 (566)
                      ......+..+++|+.|+++++.+.+..+..+..  ...+++.+++++|.+.+.+|..+     ..+++|+.++++++.+ 
T Consensus       210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-  288 (520)
T 2z7x_B          210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-  288 (520)
T ss_dssp             HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred             ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence            011124556667777777776665443322221  12377888888888777777777     8899999999999887 


Q ss_pred             ccch-hhccCC---CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc--c
Q 040451          367 GTIP-LAIGEL---KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG--T  440 (566)
Q Consensus       367 ~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~--~  440 (566)
                       ..| ..+..+   .+|++|++++|.+....  ....+++|++|++++|++++..|..+..+++|+.|++++|.+.+  .
T Consensus       289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK  365 (520)
T ss_dssp             -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred             -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence             333 333333   68999999999986332  23688999999999999998889999999999999999999985  4


Q ss_pred             CchhhhccCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451          441 VPRQLLHIITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS  519 (566)
Q Consensus       441 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  519 (566)
                      +|..+..+..+ +.|++++|.+.+.++. .+..+++|++|++++|.+++..+..+.  ++|++|++++|+++ .+|..+.
T Consensus       366 ~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          366 IAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             HHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             chHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            45556666665 9999999999974554 488899999999999999877777665  89999999999999 6888777


Q ss_pred             CCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451          520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       520 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  561 (566)
                      .+++|+.|++++|+++...+..+..+++|++|++++|++..+
T Consensus       442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            999999999999999954444488999999999999998864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-44  Score=382.21  Aligned_cols=436  Identities=18%  Similarity=0.225  Sum_probs=272.0

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCC------C------CCCcccccCCCCCEEEccCCcccccCCcc
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS------G------KILTDLSHCSNVMKFEASNNKLEAEIPVE  125 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  125 (566)
                      .+++.|+|+++.+.+.+|.+++++++|++|++++|.+.      +      ..|...  +..|+ ++++++.+.+..+..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            57999999999999999999999999999999999752      1      112111  34555 666666665555544


Q ss_pred             ccCC-CCCCEEecc--------------------cCcCCCCCchhhcCCCCCCEEEeeCCccccc---------------
Q 040451          126 IGNL-LMLQILNIA--------------------ENHLKGQLPASIGNLSALQEIDVRGNRLGGR---------------  169 (566)
Q Consensus       126 ~~~l-~~L~~L~l~--------------------~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------  169 (566)
                      +..+ ..+..+++.                    .|++++ +|..++++++|++|++++|.+++.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence            4411 111111211                    234443 555555555555555555555542               


Q ss_pred             --CcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCc-ccc-ccccc
Q 040451          170 --IPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN-LTG-SLQDS  245 (566)
Q Consensus       170 --~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~  245 (566)
                        +|..+.                     +.++++|++|++++|.+.+.+|..+. .+++|++|++++|. ++. ..|..
T Consensus       237 ~~ip~~l~---------------------~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~  294 (636)
T 4eco_A          237 QYKTEDLK---------------------WDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDD  294 (636)
T ss_dssp             HHTTSCCC---------------------GGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHH
T ss_pred             ccCchhhh---------------------hcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHH
Confidence              444444                     00455555555555555555554443 55555555555555 544 34444


Q ss_pred             cccC------CCCceEecccccccccccc--cccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc
Q 040451          246 LSNA------TNLQGLEINGNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       246 l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      +..+      ++|++|++++|.++ ..|.  .+..+++|+.|++++|.+.+..+       .+..+++|++|++++|.+.
T Consensus       295 ~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-------~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          295 WQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-------AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             HHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-------CCEEEEEESEEECCSSEEE
T ss_pred             HHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-------hhCCCCCCCEEECCCCccc
Confidence            4443      56666666666665 4444  55566666666666665542211       2334445555555555544


Q ss_pred             cccchhHhhccccccEEEccccCccCccchhhhccCC-CCEEecCCccccccchhhccCCC--CCCEEEccCCcccccCC
Q 040451          318 GVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVN-LNALGVESNQLAGTIPLAIGELK--SLQMLFLNENFLRGTIP  394 (566)
Q Consensus       318 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~  394 (566)
                                                .+|..+..+++ |+.|++++|.++ .+|..+...+  +|++|++++|.+.+..|
T Consensus       367 --------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          367 --------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             --------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             --------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence                                      22333444555 555555555555 3344443332  55666666666555555


Q ss_pred             cccc-------CCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCC-------cCcEEEccCC
Q 040451          395 SSLG-------NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT-------LPVLLDLSDN  460 (566)
Q Consensus       395 ~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-------~l~~L~l~~~  460 (566)
                      ..+.       .+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|...+....       .++.|++++|
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence            5554       4556666666666665322233444666666666666665 55554444332       4477788888


Q ss_pred             cceecCCcccc--CCCCCCEEEccCCcccccCCcCCcCCCCCcEEeC------CCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451          461 LLNGHFPAEVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM------QDNSFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       461 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      .+. .+|..+.  .+++|++|++++|.+++ +|..+..+++|++|++      ++|++.+..|..+..+++|+.|++++|
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            777 5666665  89999999999999995 8888999999999999      567788889999999999999999999


Q ss_pred             cccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451          533 NLSGHIPQYLENLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~  560 (566)
                      ++. .+|..+.  ++|+.|+|++|++..
T Consensus       577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          577 DIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence            995 7777765  899999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-41  Score=362.01  Aligned_cols=434  Identities=20%  Similarity=0.264  Sum_probs=313.5

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeC-CCccCCCCCCcccccC-CCCCEEEc---------------cCCcccc
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTL-TNNYFSGKILTDLSHC-SNVMKFEA---------------SNNKLEA  120 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~L~L---------------~~~~~~~  120 (566)
                      .+++.|+|+++.+.+.+|..+++++.|++|+| ++|.+++..+...... ..+....+               ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 8887765422211110 00000000               0000000


Q ss_pred             -----------cCCccccCCCCCCEEeccc--CcCCCCCchhhcCCCCCCEEEeeCCcccc-----------------cC
Q 040451          121 -----------EIPVEIGNLLMLQILNIAE--NHLKGQLPASIGNLSALQEIDVRGNRLGG-----------------RI  170 (566)
Q Consensus       121 -----------~~~~~~~~l~~L~~L~l~~--~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~  170 (566)
                                 ..+........++.+.+..  |++++ +|..++++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                       0011112223444444544  77886 89999999999999999999997                 38


Q ss_pred             ccccc--ccCccceeeccccccccch-hhhhCCCCCcEEEcccCc-Ccc-cCCcccc------CCCCCccEEEccCCccc
Q 040451          171 PSTIS--HVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNR-FHG-SLPLDNG------VNLPNLRYFSISGNNLT  239 (566)
Q Consensus       171 ~~~l~--~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~l~~~~~~  239 (566)
                      |..++  ++++|+.|++++|.+.+.. ..+..+++|++|++++|. +.+ .+|..+.      ..+++|++|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88887  9999999999999876554 789999999999999998 876 6765432      35679999999999999


Q ss_pred             ccccc--ccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCC-CCEEEcccCcc
Q 040451          240 GSLQD--SLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTK-LEVLDLHSNRF  316 (566)
Q Consensus       240 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~  316 (566)
                       ..|.  .+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+...+       ..+..+++ |++|++++|.+
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIP-------EDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCC-------TTSCEECTTCCEEECCSSCC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccch-------HHHhhccccCCEEECcCCCC
Confidence             7777  8999999999999999998 566 7899999999999999887332       23556666 77777777776


Q ss_pred             ccccchhHhhccccccEEEccccCccCccchhhhcc--CCCCEEecCCccccccchh---hcc--CCCCCCEEEccCCcc
Q 040451          317 GGVLPFSLANLSITMTEIANGSNQISGTIPDVIANL--VNLNALGVESNQLAGTIPL---AIG--ELKSLQMLFLNENFL  389 (566)
Q Consensus       317 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~  389 (566)
                      . .                         +|..+..+  ++|+.|++++|.+.+..+.   .+.  .+++|++|++++|.+
T Consensus       632 ~-~-------------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L  685 (876)
T 4ecn_A          632 K-Y-------------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI  685 (876)
T ss_dssp             C-S-------------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred             C-c-------------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence            5 2                         22223322  2366677776666543321   111  234677777777777


Q ss_pred             cccCCccc-cCCCCCCeEecccCcceecCCccccC--------CCCCcEEEccCCcccccCchhhhccCCcCcEEEccCC
Q 040451          390 RGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSIGN--------CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN  460 (566)
Q Consensus       390 ~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~  460 (566)
                      + .+|..+ ..+++|+.|++++|+++ .+|..+..        +++|                         +.|++++|
T Consensus       686 ~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-------------------------~~L~Ls~N  738 (876)
T 4ecn_A          686 Q-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-------------------------TTIDLRFN  738 (876)
T ss_dssp             C-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-------------------------CEEECCSS
T ss_pred             C-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-------------------------cEEECCCC
Confidence            6 444433 36677777777777666 33332221        1134                         55555555


Q ss_pred             cceecCCcccc--CCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC------CcccccCCcCCCCCCCCCEEeCCCC
Q 040451          461 LLNGHFPAEVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD------NSFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       461 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      .+. .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|+|++      |.+.+..|..+..+++|+.|++++|
T Consensus       739 ~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             CCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence            555 4555665  89999999999999995 788899999999999976      7788889999999999999999999


Q ss_pred             cccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451          533 NLSGHIPQYLENLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~  560 (566)
                      ++. .+|..+.  ++|+.|+|++|++..
T Consensus       817 ~L~-~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          817 DIR-KVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence            994 7787765  799999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.4e-40  Score=349.41  Aligned_cols=509  Identities=17%  Similarity=0.146  Sum_probs=390.1

Q ss_pred             EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcc
Q 040451           39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKL  118 (566)
Q Consensus        39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~  118 (566)
                      ++=++.+++ .+|..+.  +.+++|+|++|.++...+.+|.++++|++|+|++|.++...+.+|.++++|++|+|++|++
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            344444555 3554442  4799999999999955567899999999999999999977778899999999999999999


Q ss_pred             cccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc-cCcccccccCccceeeccccccccch-hh
Q 040451          119 EAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVARNQFSGMI-PL  196 (566)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~  196 (566)
                      ++..+.+|.++++|++|++++|++++..+..++++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+.. ..
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            86666789999999999999999996666679999999999999999875 35777899999999999999998765 33


Q ss_pred             hhCCC----CCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccc-ccccccccCCCCceEecccccc------ccc
Q 040451          197 IYNIS----SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINGNLF------SGK  265 (566)
Q Consensus       197 l~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~------~~~  265 (566)
                      +..+.    ....++++.|.+. .++...+ ....++.+++.++.... ..+..+..+..++...+..+..      ...
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            33332    3446888888877 4444444 44567778888775442 2334566677777666543322      112


Q ss_pred             ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCcc
Q 040451          266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI  345 (566)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~  345 (566)
                      ....+.....+....+..+.......   .....+.....++.+.+.++.+.......   ....++.+++.++.+.+..
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCC
T ss_pred             cccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcC
Confidence            22334444555555444333221111   11133456678899999888766443321   2357899999998876543


Q ss_pred             chhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEecccCcceecCCccccC
Q 040451          346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN  423 (566)
Q Consensus       346 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  423 (566)
                      +   ..+..|+.+.+.++.....  .....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..+..+..
T Consensus       345 ~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~  418 (635)
T 4g8a_A          345 T---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG  418 (635)
T ss_dssp             C---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT
T ss_pred             c---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc
Confidence            3   3467888999988876533  234578999999999998753  35666778899999999999887 45567888


Q ss_pred             CCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc-ccCCcCCcCCCCCcE
Q 040451          424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS-GEIPTTLGGCTSLEY  502 (566)
Q Consensus       424 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~  502 (566)
                      +++|+.+++.++......+...+.....++.++++.|.+....+..+..++.|+.|++++|.+. ...|..|..+++|++
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            9999999999998876666555555555699999999999888888999999999999999865 357888999999999


Q ss_pred             EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451          503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  564 (566)
Q Consensus       503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~  564 (566)
                      |+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..|.
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            99999999998899999999999999999999988888999999999999999999987775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.1e-41  Score=350.58  Aligned_cols=461  Identities=17%  Similarity=0.169  Sum_probs=235.5

Q ss_pred             EEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451           37 TGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  116 (566)
                      ++++++++++++ +|..+.  ++|++|+|++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            667777777764 554443  67777777777777545566777777777777777777656666777777777777777


Q ss_pred             cccccCCccccCCCCCCEEecccCcCCC-CCchhhcCCCCCCEEEeeCCcccccCcccccccCcc--ceeecccccc--c
Q 040451          117 KLEAEIPVEIGNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVARNQF--S  191 (566)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~  191 (566)
                      .++ .+|..  .+++|++|++++|+++. ..|..+.++++|++|++++|.+...   .+..+++|  +.|++++|.+  .
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence            776 45544  66777777777777663 2346677777777777777766532   33334444  6666666555  2


Q ss_pred             cch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc----cc
Q 040451          192 GMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS----GK  265 (566)
Q Consensus       192 ~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~  265 (566)
                      +.. ..+..+. ..-.++++.|.+.+.++...+                        ..+++|+.+++++|...    ..
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~------------------------~~l~~L~~L~l~~n~~~~~~l~~  240 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV------------------------NALGHLQLSNIKLNDENCQRLMT  240 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE------------------------SSEEEEEEEEEECCSTTHHHHHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcc------------------------cccceEEEecccccccccchHHH
Confidence            221 1121111 001223333333322222222                        23333444444333200    00


Q ss_pred             ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCcc
Q 040451          266 VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI  345 (566)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~  345 (566)
                      ....+..++.|+.+++.++.+.......  . ......++|++|++++|.+.+..|..+....                 
T Consensus       241 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~--~-~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~-----------------  300 (562)
T 3a79_B          241 FLSELTRGPTLLNVTLQHIETTWKCSVK--L-FQFFWPRPVEYLNIYNLTITERIDREEFTYS-----------------  300 (562)
T ss_dssp             HHHHHHSCSSCEEEEEEEEEECHHHHHH--H-HHHHTTSSEEEEEEEEEEECSCCCCCCCCCC-----------------
T ss_pred             HHHHHhccCcceEEEecCCcCcHHHHHH--H-HHhhhcccccEEEEeccEeeccccchhhhcc-----------------
Confidence            0111223333333333333221110000  0 0011123555555555555444333221000                 


Q ss_pred             chhhhccCCCCEEecCCccccccch-hhcc---CCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccc
Q 040451          346 PDVIANLVNLNALGVESNQLAGTIP-LAIG---ELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSI  421 (566)
Q Consensus       346 ~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  421 (566)
                         ...++.|+.+++..+.+  ..| ..+.   ...+|++|++++|.+....  ....+++|++|++++|.+++..+..+
T Consensus       301 ---~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          301 ---ETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             ---SCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             ---cccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence               02233333333333322  111 1110   1234555555555543111  11345555555555555554455555


Q ss_pred             cCCCCCcEEEccCCcccc--cCchhhhccCCcCcEEEccCCcceecCC-ccccCCCCCCEEEccCCcccccCCcCCcCCC
Q 040451          422 GNCQNLILLTTRKNKLSG--TVPRQLLHIITLPVLLDLSDNLLNGHFP-AEVGNLKNLVSLDISSNMFSGEIPTTLGGCT  498 (566)
Q Consensus       422 ~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  498 (566)
                      ..+++|+.|++++|.+.+  .++..+..+..+ +.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.  +
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            555555555555555542  112223333333 555666665554233 2466667777777777777655554443  5


Q ss_pred             CCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451          499 SLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       499 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  561 (566)
                      +|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.++
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            7777777777777 4565555777777777777777733333366777777777777776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-40  Score=347.61  Aligned_cols=436  Identities=17%  Similarity=0.177  Sum_probs=281.0

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++|++++|.+.+..+..+.++++|++|+|++|.+++..|++|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            68999999999999888889999999999999999999777888999999999999999998 55655  8999999999


Q ss_pred             cCCcccc-cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC--CEEEeeCCcc--cccCcccccccC--ccceeecc
Q 040451          114 SNNKLEA-EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVR--NLISFNVA  186 (566)
Q Consensus       114 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~--~L~~L~l~  186 (566)
                      ++|.+.+ ..|..|+++++|++|++++|.++..   .+..+++|  ++|++++|.+  .+..|..+..+.  .+ .++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~  204 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH  204 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence            9999985 3468899999999999999999853   45555666  9999999998  777777777665  33 45777


Q ss_pred             ccccccch--hhhhCCCCCcEEEcccCcC-----cccCCccccCCCCCccEEEccCCcccccccc---ccccCCCCceEe
Q 040451          187 RNQFSGMI--PLIYNISSLQYIFIHTNRF-----HGSLPLDNGVNLPNLRYFSISGNNLTGSLQD---SLSNATNLQGLE  256 (566)
Q Consensus       187 ~~~~~~~~--~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~  256 (566)
                      .|.+....  ..+..+++|+.+++++|..     .+.+ ..+ ...+.|+.+++..+.+......   .....++|++|+
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l-~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~  282 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SEL-TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN  282 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHH-HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHH-HHH-hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence            77766533  3455678889999888741     1111 111 2456677777666654422110   011234667777


Q ss_pred             cccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc-hhHhhc--cccccE
Q 040451          257 INGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANL--SITMTE  333 (566)
Q Consensus       257 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~l~~  333 (566)
                      +++|.+.+..|..+...                         ....++.|+.+++..+.+  ..| ..+...  ..++++
T Consensus       283 l~~n~l~~~ip~~~~~~-------------------------~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          283 IYNLTITERIDREEFTY-------------------------SETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEEEECSCCCCCCCCC-------------------------CSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred             EeccEeeccccchhhhc-------------------------ccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence            77766655444433100                         001222233333333322  111 111110  012333


Q ss_pred             EEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCccccc--CCccccCCCCCCeEecccC
Q 040451          334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT--IPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       334 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~  411 (566)
                      +++++|.+....  ....+++|+.|++++|.+++..+..+..+++|++|++++|++++.  .|..+..+++|++|++++|
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence            333333332111  013455666666666666655555566666666666666665531  2234555666666666666


Q ss_pred             cceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccC
Q 040451          412 NLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI  490 (566)
Q Consensus       412 ~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  490 (566)
                      ++++.+| ..+..+++|+.|++++|.++                         +..+..+.  ++|+.|++++|.++ .+
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~l~--~~L~~L~L~~N~l~-~i  465 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLT-------------------------GSVFRCLP--PKVKVLDLHNNRIM-SI  465 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCC-------------------------GGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCC-------------------------cchhhhhc--CcCCEEECCCCcCc-cc
Confidence            6654233 23455555555555555554                         33232222  57888888888887 66


Q ss_pred             CcCCcCCCCCcEEeCCCCcccccCCcC-CCCCCCCCEEeCCCCcccc
Q 040451          491 PTTLGGCTSLEYLGMQDNSFTRSIPST-LSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       491 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~  536 (566)
                      |..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++.+
T Consensus       466 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             ChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCC
Confidence            6666688888888888888884 4444 7788888888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.3e-37  Score=313.53  Aligned_cols=380  Identities=17%  Similarity=0.183  Sum_probs=234.8

Q ss_pred             CEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEccc
Q 040451          133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHT  210 (566)
Q Consensus       133 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~  210 (566)
                      +.++.+++.++ .+|. +  .++|++|++++|.+.+..|..+.++++|++|++++|.+....  ..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45677777777 5665 2  268999999999988777888888999999999888775332  5567778888888888


Q ss_pred             CcCcccCCccccCCCCCccEEEccCCccccccccc--cccCCCCceEeccccccccccccc-ccCCCCCCEEECCCCcCC
Q 040451          211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDS--LSNATNLQGLEINGNLFSGKVSIN-FSRLQNLSRLNLGENNLG  287 (566)
Q Consensus       211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  287 (566)
                      |.+.+..|..+. .+++|++|++++|.+++..+..  +..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.
T Consensus        89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            777654454444 6777777777777776533333  667777777777777776655554 567777777777777766


Q ss_pred             CCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccc
Q 040451          288 TGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAG  367 (566)
Q Consensus       288 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  367 (566)
                      ...+..+.   .+ ...+++.++++++.+.+..+..+...                 ....+..+++|+.|++++|.+++
T Consensus       168 ~~~~~~l~---~l-~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~l~~  226 (455)
T 3v47_A          168 SICEEDLL---NF-QGKHFTLLRLSSITLQDMNEYWLGWE-----------------KCGNPFKNTSITTLDLSGNGFKE  226 (455)
T ss_dssp             CCCTTTSG---GG-TTCEEEEEECTTCBCTTCSTTCTTHH-----------------HHCCTTTTCEEEEEECTTSCCCH
T ss_pred             ccChhhhh---cc-ccccccccccccCcccccchhhcccc-----------------ccccccccceeeeEecCCCcccc
Confidence            55442211   01 11456666666666554332221110                 00112244566777777776665


Q ss_pred             cchhhccC---CCCCCEEEccCCcccccC----------Ccccc--CCCCCCeEecccCcceecCCccccCCCCCcEEEc
Q 040451          368 TIPLAIGE---LKSLQMLFLNENFLRGTI----------PSSLG--NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT  432 (566)
Q Consensus       368 ~~~~~~~~---~~~L~~L~l~~~~~~~~~----------~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  432 (566)
                      ..+..+..   .++|+.|++++|...+..          +..+.  ..++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  306 (455)
T 3v47_A          227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL  306 (455)
T ss_dssp             HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence            55544432   366777777766543211          11111  1245666666666655555555555555555555


Q ss_pred             cCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451          433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR  512 (566)
Q Consensus       433 ~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  512 (566)
                      ++|.+.                         +..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus       307 s~n~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          307 AQNEIN-------------------------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             TTSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCCccc-------------------------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence            555554                         4444455666666666666666665555666666666666666666666


Q ss_pred             cCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCC
Q 040451          513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       513 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p  563 (566)
                      ..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            556666666666666666666665555555666666666666666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.5e-38  Score=318.43  Aligned_cols=396  Identities=22%  Similarity=0.242  Sum_probs=140.8

Q ss_pred             CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCC-------------CCEEEccCCcccccCC
Q 040451           57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSN-------------VMKFEASNNKLEAEIP  123 (566)
Q Consensus        57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~  123 (566)
                      .++|++|++++|.+ +.+|+.++++++|++|++++|.+++..|..++.+++             +++|++++|.++ .+|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            34455555555544 345544555555555555555444444444444444             455666655554 233


Q ss_pred             ccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCC
Q 040451          124 VEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL  203 (566)
Q Consensus       124 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L  203 (566)
                      ..   .++|++|++++|.+++ +|..   +++|++|++++|.+++ ++..   .++|++|++++|.+.+.+ .+..+++|
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L  155 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFL  155 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCC
Confidence            21   2455666666665553 4432   2455666666555542 1111   134555555555544433 34444444


Q ss_pred             cEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCC
Q 040451          204 QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE  283 (566)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (566)
                      ++|++++|.+. .+|..    .++|++|++++|.++. .+ .+..+++|+.|++++|.+.+ .+.   ..++|+.|++++
T Consensus       156 ~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~  224 (454)
T 1jl5_A          156 KIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGN  224 (454)
T ss_dssp             CEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCS
T ss_pred             CEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcC
Confidence            55555444444 22221    2244444444444442 22 23444444444444444332 111   012334444444


Q ss_pred             CcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCc
Q 040451          284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  363 (566)
                      |.+...+        .+..+++|++|++++|.+.                         + +|.   .+++|+.|++++|
T Consensus       225 n~l~~lp--------~~~~l~~L~~L~l~~N~l~-------------------------~-l~~---~~~~L~~L~l~~N  267 (454)
T 1jl5_A          225 NILEELP--------ELQNLPFLTTIYADNNLLK-------------------------T-LPD---LPPSLEALNVRDN  267 (454)
T ss_dssp             SCCSSCC--------CCTTCTTCCEEECCSSCCS-------------------------S-CCS---CCTTCCEEECCSS
T ss_pred             CcCCccc--------ccCCCCCCCEEECCCCcCC-------------------------c-ccc---cccccCEEECCCC
Confidence            3332111        0223333333333333322                         1 111   1134555555555


Q ss_pred             cccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCC-CCCcEEEccCCcccccCc
Q 040451          364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNC-QNLILLTTRKNKLSGTVP  442 (566)
Q Consensus       364 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~  442 (566)
                      .+++ ++.   .+++|++|++++|.+++ ++.   ..++|++|++++|++++. +    .. ++|+.|            
T Consensus       268 ~l~~-l~~---~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L------------  322 (454)
T 1jl5_A          268 YLTD-LPE---LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL-C----DLPPSLEEL------------  322 (454)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEE------------
T ss_pred             cccc-cCc---ccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEE------------
Confidence            4443 111   12445555555555442 111   113455555555544421 1    11 244444            


Q ss_pred             hhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc--cCCcCCCC
Q 040451          443 RQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR--SIPSTLSS  520 (566)
Q Consensus       443 ~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~  520 (566)
                                   ++++|.+.+ +|..   +++|++|++++|.++ .+|.   .+++|++|++++|++++  .+|..+..
T Consensus       323 -------------~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          323 -------------NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             -------------ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             -------------ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence                         444444442 2221   345555555555554 3333   24555555555555554  34444444


Q ss_pred             C-------------CCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451          521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  564 (566)
Q Consensus       521 l-------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~  564 (566)
                      +             ++|+.|++++|++++. +. +.  ++++.|++.+|.+.+.+|.
T Consensus       382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~-iP--~sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          382 LRMNSHLAEVPELPQNLKQLHVETNPLREF-PD-IP--ESVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             EECCC----------------------------------------------------
T ss_pred             hhhcccccccccccCcCCEEECCCCcCCcc-cc-ch--hhHhheeCcCcccCCcccc
Confidence            4             7899999999998852 11 21  4577888889888887663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-37  Score=315.86  Aligned_cols=364  Identities=17%  Similarity=0.177  Sum_probs=231.4

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc-CccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI-PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE  112 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  112 (566)
                      .++++|++++|.+.+..+..++++++|++|+|++|.+.+.+ +..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45677777777776666666777777777777777665444 34566677777777777776655566677777777777


Q ss_pred             ccCCcccccCCcc--ccCCCCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccccCccccccc--Cccceeeccc
Q 040451          113 ASNNKLEAEIPVE--IGNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGGRIPSTISHV--RNLISFNVAR  187 (566)
Q Consensus       113 L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~  187 (566)
                      +++|.+++..+..  ++++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            7777766533333  666777777777777776554554 5667777777777777666656666554  5666666666


Q ss_pred             cccccchhh---------hhCCCCCcEEEcccCcCcccCCccccC--CCCCccEEEccCCccccccccccccCCCCceEe
Q 040451          188 NQFSGMIPL---------IYNISSLQYIFIHTNRFHGSLPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE  256 (566)
Q Consensus       188 ~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  256 (566)
                      |.+.+....         +..+++|++|++++|.+.+..+..+..  ..++|+.+++++|........            
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  257 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------  257 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence            665544311         223345555555555544333322210  124455555554433211000            


Q ss_pred             ccccccccccccccc--CCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEE
Q 040451          257 INGNLFSGKVSINFS--RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI  334 (566)
Q Consensus       257 l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l  334 (566)
                        .+.+.......+.  ..++|+.|++++|.+....+      ..+..+++|++|++++|.+.+..              
T Consensus       258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~--------------  315 (455)
T 3v47_A          258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKID--------------  315 (455)
T ss_dssp             --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEEC--------------
T ss_pred             --hhhhccCcccccccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccC--------------
Confidence              0011111111122  23678888998888876655      45677888888888888766432              


Q ss_pred             EccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 040451          335 ANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       335 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  414 (566)
                                 +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus       316 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          316 -----------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             -----------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence                       344566777888888888777666777777888888888888887666777778888888888888887


Q ss_pred             ecCCccccCCCCCcEEEccCCcccccCc
Q 040451          415 GKIPPSIGNCQNLILLTTRKNKLSGTVP  442 (566)
Q Consensus       415 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~  442 (566)
                      +..+..+..+++|+.|++++|++.+..|
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCC
Confidence            6555667778888888888888776655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-37  Score=297.58  Aligned_cols=280  Identities=26%  Similarity=0.411  Sum_probs=247.4

Q ss_pred             CccCCCCCCCCCCCCCCCCCCCC--cccCccCCCC--CcEEEEEcCCCCCcc--cCcccCcCCCCCcEEEcCC-CCCccc
Q 040451            1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRR--QRVTGLDLRQQSVGG--VLSPFVGNLSFPRSINLPN-KSFRGE   73 (566)
Q Consensus         1 ~~~~~~~~~~~~~~w~~~~~~c~--w~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~   73 (566)
                      ||+++.||. ...+|+.+.+||.  |.||.|....  ++|++|+++++.+.+  .+|..++++++|++|+|++ |.+.+.
T Consensus        14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~   92 (313)
T 1ogq_A           14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence            466777887 7899999999999  9999997654  689999999999998  8999999999999999995 999989


Q ss_pred             cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCC
Q 040451           74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL  153 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  153 (566)
                      +|..++++++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..++++++|++|++++|++++.+|..+..+
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            99999999999999999999988889999999999999999999998899999999999999999999998899999999


Q ss_pred             C-CCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEE
Q 040451          154 S-ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF  231 (566)
Q Consensus       154 ~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (566)
                      + +|++|++++|.+.+..|..+..++ |+.|++++|.+.+.. ..+..+++|++|++++|.+.+.++. + ..+++|++|
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L  249 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEE
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEE
Confidence            8 999999999999988899998887 999999999988655 6677888999999999888755554 3 367888888


Q ss_pred             EccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCc
Q 040451          232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN  285 (566)
Q Consensus       232 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (566)
                      ++++|.+++..|..+..+++|+.|++++|.+++..|.. ..+++|+.+++++|.
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88888888777888888888888888888888766664 677888888888776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.2e-36  Score=307.28  Aligned_cols=390  Identities=21%  Similarity=0.283  Sum_probs=207.3

Q ss_pred             CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451           80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI  159 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  159 (566)
                      +.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+++++.+|..           .++++|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence            357788888888888 47788888888888888888888777888888877764444443321           234555


Q ss_pred             EeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451          160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      ++++|.+++ +|..   .++|+.|++++|.+.+.+.   ..++|++|++++|.+. .++.    ..++|++|++++|.++
T Consensus        77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLE  144 (454)
T ss_dssp             ECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCS
T ss_pred             EecCCcccc-CCCC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCC
Confidence            555555542 2221   2455555555555554332   1245666666666554 2221    1246667777766666


Q ss_pred             cccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccc
Q 040451          240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV  319 (566)
Q Consensus       240 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  319 (566)
                      . .| .+..+++|++|++++|.+++ .+..   .++|+.|++++|.+...+        .+..+++|++|++++|.+.+.
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSSC
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCcC
Confidence            4 34 36666777777777766653 2322   246777777777665421        245666777777777665532


Q ss_pred             cchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccC
Q 040451          320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGN  399 (566)
Q Consensus       320 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  399 (566)
                      .                          ..   .++|+.|++++|.+. .++ .+..+++|++|++++|++++ +|.   .
T Consensus       211 ~--------------------------~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~  255 (454)
T 1jl5_A          211 P--------------------------DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---L  255 (454)
T ss_dssp             C--------------------------CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---C
T ss_pred             C--------------------------CC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---c
Confidence            1                          10   124555555555554 233 24455555555555555542 222   1


Q ss_pred             CCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCC-CCCCE
Q 040451          400 LTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNL-KNLVS  478 (566)
Q Consensus       400 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~-~~L~~  478 (566)
                      +++|++|++++|++++ +|..   .++|+.|++++|.+.+ ++    ..+..++.|++++|.+.+.     ..+ ++|++
T Consensus       256 ~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~  321 (454)
T 1jl5_A          256 PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEE  321 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCE
T ss_pred             ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCE
Confidence            2555666666655553 2221   2556666666666553 11    1123346677777766642     223 58999


Q ss_pred             EEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc--cCCccCcCC-----------
Q 040451          479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG--HIPQYLENL-----------  545 (566)
Q Consensus       479 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~~-----------  545 (566)
                      |++++|.+++ +|..   +++|++|++++|.++. +|.   .+++|+.|++++|++++  .+|..+..+           
T Consensus       322 L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~  393 (454)
T 1jl5_A          322 LNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE  393 (454)
T ss_dssp             EECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred             EECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence            9999999984 6653   5899999999999994 665   46899999999999997  678888777           


Q ss_pred             --CCCCeeeCCCCcCcc--cCCC
Q 040451          546 --SFLSFLNLSYNHFEG--KVPI  564 (566)
Q Consensus       546 --~~L~~L~l~~~~l~~--~~p~  564 (566)
                        ++|+.|++++|++.+  ++|.
T Consensus       394 ~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             -----------------------
T ss_pred             ccCcCCEEECCCCcCCccccchh
Confidence              899999999999998  8885

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.3e-34  Score=290.77  Aligned_cols=345  Identities=27%  Similarity=0.384  Sum_probs=175.0

Q ss_pred             CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451           57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN  136 (566)
Q Consensus        57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  136 (566)
                      ++++++|++.++.+. .++. +..+++|++|++++|.++.. +. +..+++|++|++++|.+.+. +. ++++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEE
Confidence            455556666555554 3442 45555555555555555532 22 55555555555555555432 22 55555555555


Q ss_pred             cccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCccc
Q 040451          137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS  216 (566)
Q Consensus       137 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  216 (566)
                      +++|.+++ ++. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+... ..+.                  
T Consensus       119 L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~------------------  174 (466)
T 1o6v_A          119 LFNNQITD-IDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLA------------------  174 (466)
T ss_dssp             CCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGT------------------
T ss_pred             CCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhc------------------
Confidence            55555552 222 4555555555555555442 11 244444444444431 11111 1122                  


Q ss_pred             CCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhh
Q 040451          217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDF  296 (566)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (566)
                             .+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...       
T Consensus       175 -------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------  236 (466)
T 1o6v_A          175 -------NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-------  236 (466)
T ss_dssp             -------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------
T ss_pred             -------cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------
Confidence                   455555555555555432  235555666666666666554333  44555566666665554432       


Q ss_pred             hhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCC
Q 040451          297 ITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGEL  376 (566)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  376 (566)
                       ..+..+++|++|++++|.+.+..                         +  +..+++|+.|++++|.+++..+  +..+
T Consensus       237 -~~l~~l~~L~~L~l~~n~l~~~~-------------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l  286 (466)
T 1o6v_A          237 -GTLASLTNLTDLDLANNQISNLA-------------------------P--LSGLTKLTELKLGANQISNISP--LAGL  286 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCG-------------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             -hhhhcCCCCCEEECCCCccccch-------------------------h--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence             12344555555555555443211                         1  3445556666666665554322  5555


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEE
Q 040451          377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD  456 (566)
Q Consensus       377 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~  456 (566)
                      ++|++|++++|++.+..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++.+                 
T Consensus       287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-----------------  345 (466)
T 1o6v_A          287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-----------------  345 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-----------------
T ss_pred             CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-----------------
Confidence            666666666666553222  4555666666666665554332  4455555555555555441                 


Q ss_pred             ccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451          457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR  512 (566)
Q Consensus       457 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  512 (566)
                              .  ..+..+++|+.|++++|.+++..|  +..+++|++|++++|++++
T Consensus       346 --------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          346 --------V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --------C--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             --------c--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                    1  234555666666666666654433  5556666666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-33  Score=286.66  Aligned_cols=370  Identities=26%  Similarity=0.373  Sum_probs=210.8

Q ss_pred             ccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccce
Q 040451          103 SHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS  182 (566)
Q Consensus       103 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  182 (566)
                      ..+++++.|++.++.+. .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            34667888888888776 344 47777888888888888773 443 7778888888888887764333  777777777


Q ss_pred             eeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccc
Q 040451          183 FNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLF  262 (566)
Q Consensus       183 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  262 (566)
                      |++++|.+.+... +..+++|++|++++|.+.+ ++.  ...+++|++|++.. .+...  ..+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence            7777777665543 5556666666666655542 221  12455555555532 22211  1144444444444444444


Q ss_pred             cccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCcc
Q 040451          263 SGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS  342 (566)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  342 (566)
                      .                        ..        ..+..+++|++|++++|.+.+..+  +.. .++++.|++++|.+.
T Consensus       190 ~------------------------~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          190 S------------------------DI--------SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLK  234 (466)
T ss_dssp             C------------------------CC--------GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCC
T ss_pred             C------------------------CC--------hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcc
Confidence            3                        21        123344455555555544432211  000 112222222222222


Q ss_pred             CccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCcccc
Q 040451          343 GTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIG  422 (566)
Q Consensus       343 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  422 (566)
                      +.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..+  +.
T Consensus       235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  306 (466)
T 1o6v_A          235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS  306 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred             cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence            11  124445555555555555543322  4455555555555555542221  4445555555555555443221  33


Q ss_pred             CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcE
Q 040451          423 NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY  502 (566)
Q Consensus       423 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  502 (566)
                      .+++|                         +.|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++
T Consensus       307 ~l~~L-------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  357 (466)
T 1o6v_A          307 NLKNL-------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW  357 (466)
T ss_dssp             GCTTC-------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             CCCCC-------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence            44444                         455555555544333  67889999999999999854  46889999999


Q ss_pred             EeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCc-------CCCCCCeeeCCCCcCcc
Q 040451          503 LGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-------NLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       503 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~  560 (566)
                      |++++|++++..|  +..+++|+.|++++|++++. |..+.       .+..+....+....+++
T Consensus       358 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~-p~~~~~~~~ip~~~~~~~~~~~~~~~is~  419 (466)
T 1o6v_A          358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTVKNVTGALIAPATISD  419 (466)
T ss_dssp             EECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC-CBCCCSEEEEECCCBCTTSCBCCCSEEST
T ss_pred             EeCCCCccCccch--hhcCCCCCEEeccCCcccCC-chhhcccceecccccccCCCeecCceecC
Confidence            9999999997766  88999999999999999853 32221       12344445555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-34  Score=289.77  Aligned_cols=193  Identities=19%  Similarity=0.219  Sum_probs=124.7

Q ss_pred             cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCC
Q 040451           74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL  153 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  153 (566)
                      .+..++++++|++|++++|.+++ .| .+..+++|++|++++|.+++ ++  ++++++|++|++++|.+++ ++  +..+
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l  105 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPL  105 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred             cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCC
Confidence            33456778888888888888874 34 67888888888888888874 33  7788888888888888874 33  7788


Q ss_pred             CCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEc
Q 040451          154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI  233 (566)
Q Consensus       154 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  233 (566)
                      ++|++|++++|.+++ ++  +..+++|+.|++++|.+.+.  .+..+++|++|++++|...+.++  + ..+++|++|++
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~l  177 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDC  177 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEEC
Confidence            888888888888774 33  67777777887777777654  25556666666666664443432  1 24556666666


Q ss_pred             cCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451          234 SGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       234 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      ++|.++.. +  +..+++|+.|++++|.+++.   .+..+++|+.|++++|.+.+
T Consensus       178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            66655532 2  44555555555555555432   24444455555555544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-34  Score=290.94  Aligned_cols=320  Identities=22%  Similarity=0.248  Sum_probs=172.7

Q ss_pred             cEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCC
Q 040451          204 QYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGE  283 (566)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (566)
                      +.++.+++.+. .+|..+   .++++.|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555554 555443   25677777777777766666777777778888877777766677777777777777777


Q ss_pred             CcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCc
Q 040451          284 NNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  363 (566)
                      |.+...+.      ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus        90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           90 NRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             SCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            77766554      345667777777777776654433333222 23333333333333333344444555555555555


Q ss_pred             cccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCch
Q 040451          364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR  443 (566)
Q Consensus       364 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  443 (566)
                      .+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.++ .++ 
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-  240 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-  240 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCC-
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccC-
Confidence            554444444455555555555555554444444445555555555554444333333333334555555555444 233 


Q ss_pred             hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCC
Q 040451          444 QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKS  523 (566)
Q Consensus       444 ~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  523 (566)
                                             +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++
T Consensus       241 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          241 -----------------------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             -----------------------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             -----------------------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence                                   233444455555555555554444444445555555555555555444444555555


Q ss_pred             CCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          524 ITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       524 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      |+.|++++|.++...+..+..+++|++|++++|++.
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555554444444444455555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-33  Score=285.81  Aligned_cols=364  Identities=18%  Similarity=0.171  Sum_probs=268.4

Q ss_pred             cccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccc
Q 040451           47 GGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEI  126 (566)
Q Consensus        47 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  126 (566)
                      .+..+..++++++|++|++++|.++ .+| .+..+++|++|++++|.+++. +  +..+++|++|++++|.+++ ++  +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--V  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred             CcccccChhHcCCCCEEEccCCCcc-cCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--c
Confidence            3344556777888888888888887 455 578888888888888888753 3  7788888888888888874 33  7


Q ss_pred             cCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEE
Q 040451          127 GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYI  206 (566)
Q Consensus       127 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  206 (566)
                      +++++|++|++++|++++ ++  +..+++|++|++++|.+++.   .++.+++|+.|++++|...+.. .+..+++|++|
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L  175 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTL  175 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEE
T ss_pred             CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEE
Confidence            888888888888888884 43  77888888888888888753   2777888888888888533322 46677888888


Q ss_pred             EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451          207 FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      ++++|.+.+ ++   ...+++|+.|++++|.++..   .+..+++|+.|++++|.+++ .|  +..+++|+.|++++|.+
T Consensus       176 ~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          176 DCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             ECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence            888888874 55   33788999999999988865   37788999999999999886 34  77889999999999988


Q ss_pred             CCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc
Q 040451          287 GTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA  366 (566)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  366 (566)
                      .+.+.         ..+++|+.|+++++               .++.+++++|...+.+|  ++.+++|+.|++++|...
T Consensus       246 ~~~~~---------~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          246 TELDV---------STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             SCCCC---------TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             CCcCH---------HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence            76533         45778888888765               45667777887776665  467888999999888766


Q ss_pred             ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhh
Q 040451          367 GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLL  446 (566)
Q Consensus       367 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  446 (566)
                      +.++.   ..++|+.|++++|             ++|++|++++|++++.   .+..+++|+.|++++|++.+ +     
T Consensus       300 ~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l-----  354 (457)
T 3bz5_A          300 YLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-F-----  354 (457)
T ss_dssp             CEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-C-----
T ss_pred             ceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-c-----
Confidence            55542   3345555554443             6788888888888863   37788888888888888873 2     


Q ss_pred             ccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCC
Q 040451          447 HIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTL  494 (566)
Q Consensus       447 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  494 (566)
                        . .+..++++.|.+.+.     ..+..|..+++++|.+++.+|..+
T Consensus       355 --~-~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          355 --S-SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             --T-TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             --c-ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence              1 124456677777654     344567777888888877776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-33  Score=278.91  Aligned_cols=348  Identities=18%  Similarity=0.195  Sum_probs=219.7

Q ss_pred             CCCCCCCCCCCC-cccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcc-ccCCCCCCEEeC
Q 040451           12 TSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHE-VSNLFRLQNLTL   89 (566)
Q Consensus        12 ~~~w~~~~~~c~-w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l   89 (566)
                      ..+|....+||. |.+..|...     .+.+............-..++++++|+++++.+. .+|.. +..+++|++|++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~-----~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L   76 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL   76 (390)
T ss_dssp             ----CCEECBCC------EEEE-----SCEECSSCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEEC
T ss_pred             cCCCCCccceehhhhhhcccee-----eeeeecccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEEEC
Confidence            467888888885 666666422     1222222222122222345688999999999887 55544 688899999999


Q ss_pred             CCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccc
Q 040451           90 TNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGG  168 (566)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~  168 (566)
                      ++|.++...+..+..+++|++|++++|.+.+..|..++++++|++|++++|.++ .+|.. +..+++|++|++++|.+..
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence            999988766778899999999999999988777777889999999999999988 44444 5888999999999998887


Q ss_pred             cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccccc
Q 040451          169 RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN  248 (566)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  248 (566)
                      ..+..+.++++|+.|++++|.+....  +..+++|++|++++|.+.                         .     +..
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~-------------------------~-----~~~  203 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-------------------------T-----LAI  203 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS-------------------------E-----EEC
T ss_pred             cChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc-------------------------c-----cCC
Confidence            76777888888888888888776542  334455555555555443                         1     112


Q ss_pred             CCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhcc
Q 040451          249 ATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS  328 (566)
Q Consensus       249 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  328 (566)
                      .+.|+.|++++|.+.....   ...++|+.|++++|.+...        ..+..+++|++|++++|.+.+.         
T Consensus       204 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~---------  263 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKI---------  263 (390)
T ss_dssp             CSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEE---------
T ss_pred             CCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCc---------
Confidence            2345555555554442211   1234566666666655432        2345566666666666655432         


Q ss_pred             ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451          329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  408 (566)
                                      .+..+..+++|+.|++++|.+++ .+..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus       264 ----------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          264 ----------------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             ----------------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             ----------------ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence                            23344555666666666666653 2334455666777777777666 44555566667777777


Q ss_pred             ccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451          409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSG  439 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~  439 (566)
                      ++|+++.. +  +..+++|+.|++++|++..
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            77766532 2  5556677777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.6e-33  Score=284.10  Aligned_cols=318  Identities=18%  Similarity=0.167  Sum_probs=218.0

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      .++.+++.+. .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            4555666665 3454443  589999999999986667789999999999999999987778889999999999999999


Q ss_pred             ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hh
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PL  196 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~  196 (566)
                      +....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+....+..+.++++|+.|++++|.+...+ ..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            88555556889999999999999998777888899999999999999988777788888899999999988887766 45


Q ss_pred             hhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCC
Q 040451          197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL  276 (566)
Q Consensus       197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  276 (566)
                      +..+++|+.|++++|.+.+. +...+..+++|++|++++|......+.......+|+.|++++|.+.+..+..+..+++|
T Consensus       172 l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             hcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            77778888888888777643 33333366777777777765554444444444566666666666654443445555666


Q ss_pred             CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451          277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN  356 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~  356 (566)
                      +.|++++|.+.....      ..+..+++|++|++++|.+.+.                         .+..|..+++|+
T Consensus       251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~  299 (477)
T 2id5_A          251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVV-------------------------EPYAFRGLNYLR  299 (477)
T ss_dssp             CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEE-------------------------CTTTBTTCTTCC
T ss_pred             CeeECCCCcCCccCh------hhccccccCCEEECCCCccceE-------------------------CHHHhcCcccCC
Confidence            666666655544333      2334455555555555544422                         223344445555


Q ss_pred             EEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451          357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR  390 (566)
Q Consensus       357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  390 (566)
                      .|++++|.+++..+..+..+++|++|++++|++.
T Consensus       300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             EEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            5555555555444444444555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-31  Score=261.66  Aligned_cols=307  Identities=24%  Similarity=0.364  Sum_probs=167.9

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ  133 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  133 (566)
                      +.++++|++|+++++.+. .++. +..+++|++|++++|.++. .+. +..+++|++|++++|.+++ + ..+.++++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            345666777777776665 4443 6666777777777776653 222 6666777777777776653 3 2466667777


Q ss_pred             EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      +|++++|.++ ..+. +..+++|++|++++|..... +..+..+++|+.|++++|.+..... +..+++|++|++++|.+
T Consensus       114 ~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          114 ELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred             EEECcCCccc-Cchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence            7777776666 2333 66666777777766654422 2335666666666666666554433 45555566666655555


Q ss_pred             cccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCC
Q 040451          214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAND  293 (566)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (566)
                      .+ ++.  ...+++|+.+++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...    
T Consensus       190 ~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----  258 (347)
T 4fmz_A          190 ED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----  258 (347)
T ss_dssp             CC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----
T ss_pred             cc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC----
Confidence            42 221  1245555555555555553322  4455555555555555543322  44555555555555544332    


Q ss_pred             hhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhc
Q 040451          294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAI  373 (566)
Q Consensus       294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  373 (566)
                          ..+..+++|++|++++|.+.+.                           ..+..+++|+.|++++|.+++..+..+
T Consensus       259 ----~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          259 ----NAVKDLTKLKMLNVGSNQISDI---------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             ----GGGTTCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             ----hhHhcCCCcCEEEccCCccCCC---------------------------hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence                1233444555555554443311                           124455556666666665555555555


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 040451          374 GELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       374 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  414 (566)
                      ..+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            555666666666665553333  455555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.2e-32  Score=285.11  Aligned_cols=353  Identities=17%  Similarity=0.151  Sum_probs=208.3

Q ss_pred             CCCCCCCCCCCCCCCC-cccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCE
Q 040451            8 PLGVTSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQN   86 (566)
Q Consensus         8 ~~~~~~~w~~~~~~c~-w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~   86 (566)
                      ......+|..+..||. |.++.|.....   +++-......  ....-..+++++.++++++.+...-+..+..+++|++
T Consensus         5 ~~~~l~~~~~~~~C~~~~~~~~c~~~~~---~i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~   79 (597)
T 3oja_B            5 QRYNVKPRQPEYKCIDSNLQYDCVFYDV---HIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL   79 (597)
T ss_dssp             ------CCCSEECCCCC--CCSEEECSC---EECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred             ccccccCCCCCCcCcccCcCceeEecCc---eecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence            3445678988888884 34444432111   1222111111  1112234678899999988887333344678889999


Q ss_pred             EeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451           87 LTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus        87 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  166 (566)
                      |++++|.+++..+..|..+++|++|++++|.+.+..|..|+++++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            99999988877777888999999999999988877777788899999999999988844444468888999999999988


Q ss_pred             cccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccc
Q 040451          167 GGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSL  246 (566)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  246 (566)
                      .+..|..+.++++|+.|++++|.+....  +..+++|+.|++++|.+.+ ++     ..+.|+.|++++|.+...     
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~-----  226 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVV-----  226 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEE-----
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccc-----
Confidence            8777777888888888888888776542  3445566666666555441 11     233455555555544422     


Q ss_pred             ccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhh
Q 040451          247 SNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN  326 (566)
Q Consensus       247 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  326 (566)
                                         ...   ..++|+.|++++|.+.+.        ..+..+++|+.|++++|.+.+..      
T Consensus       227 -------------------~~~---~~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~------  270 (597)
T 3oja_B          227 -------------------RGP---VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIM------  270 (597)
T ss_dssp             -------------------ECS---CCSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEE------
T ss_pred             -------------------ccc---cCCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCC------
Confidence                               111   113455555555544331        23444555555555555544322      


Q ss_pred             ccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeE
Q 040451          327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQL  406 (566)
Q Consensus       327 ~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  406 (566)
                                         |..+..+++|+.|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus       271 -------------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          271 -------------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             -------------------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             -------------------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence                               2334444555555555555543 2333344555555555555555 344444555555555


Q ss_pred             ecccCcceecCCccccCCCCCcEEEccCCccc
Q 040451          407 ILEVNNLQGKIPPSIGNCQNLILLTTRKNKLS  438 (566)
Q Consensus       407 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~  438 (566)
                      ++++|++.+.   .+..+++|+.|++++|++.
T Consensus       330 ~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          330 YLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             ECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             ECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence            5555555422   1444555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3e-31  Score=264.33  Aligned_cols=308  Identities=17%  Similarity=0.152  Sum_probs=235.7

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++++++++.+....+..+.++++|++|+|++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            67899999999988766666899999999999999999666678999999999999999999777888999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.++...+..|+++++|++|++++|.++...+..+..+++|++|++++|.++..   .+..+++|+.|++++|.+...
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence            99999844444468999999999999999977788899999999999999998754   367789999999999987754


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                          ...++|++|++++|.+. .++..   ..++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+
T Consensus       202 ----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          202 ----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                33468899999998887 33332   357888888888888754  457778888888888888877767777777


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~  353 (566)
                      ++|+.|++++|.+...+.       .+..+++|++|++++|.+.                          .+|..+..++
T Consensus       272 ~~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~--------------------------~~~~~~~~l~  318 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL--------------------------HVERNQPQFD  318 (390)
T ss_dssp             SSCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC--------------------------CCGGGHHHHT
T ss_pred             ccCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce--------------------------ecCccccccC
Confidence            777777777777654322       2244566666666666554                          2233344555


Q ss_pred             CCCEEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451          354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR  390 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  390 (566)
                      +|+.|++++|.++..   .+..+++|++|++++|++.
T Consensus       319 ~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          319 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             cCCEEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence            666666666655533   2445555666666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.4e-31  Score=258.35  Aligned_cols=307  Identities=26%  Similarity=0.355  Sum_probs=213.5

Q ss_pred             hhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCC
Q 040451          197 IYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNL  276 (566)
Q Consensus       197 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  276 (566)
                      +..+++|++|+++++.+. .++. + ..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            345567777777777765 3332 2 256777777777777664433  66677777777777766532  246666777


Q ss_pred             CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451          277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN  356 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~  356 (566)
                      ++|++++|.+....        .+..+++|++|++++|...                         ... ..+..+++|+
T Consensus       113 ~~L~l~~n~i~~~~--------~~~~l~~L~~L~l~~n~~~-------------------------~~~-~~~~~l~~L~  158 (347)
T 4fmz_A          113 RELYLNEDNISDIS--------PLANLTKMYSLNLGANHNL-------------------------SDL-SPLSNMTGLN  158 (347)
T ss_dssp             SEEECTTSCCCCCG--------GGTTCTTCCEEECTTCTTC-------------------------CCC-GGGTTCTTCC
T ss_pred             CEEECcCCcccCch--------hhccCCceeEEECCCCCCc-------------------------ccc-cchhhCCCCc
Confidence            77777776655431        2456666666666666433                         122 2356677777


Q ss_pred             EEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCc
Q 040451          357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK  436 (566)
Q Consensus       357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  436 (566)
                      .|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.
T Consensus       159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence            77777777664433  66677777777777777633 22 6667777777777777764332  6677777777777777


Q ss_pred             ccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCc
Q 040451          437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS  516 (566)
Q Consensus       437 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  516 (566)
                      +.+ .+. +..++.+ +.|++++|.+.+.  ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..+.
T Consensus       233 l~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          233 ITD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             cCC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChh
Confidence            763 333 4444443 7778888777643  458889999999999999984 3 4588999999999999999988888


Q ss_pred             CCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       517 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .+..+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            89999999999999999997666  788999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.4e-30  Score=271.72  Aligned_cols=308  Identities=17%  Similarity=0.152  Sum_probs=247.9

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .+++.++++++.+....+..+.++++|++|+|++|.+.+..+..|+.+++|++|++++|.+++..+..|..+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            56789999999998776677899999999999999999777778999999999999999999877888999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+.+.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence            99999955455579999999999999999987888899999999999999998854   366789999999999988754


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                          ...++|+.|++++|.+. .++..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+..+..+
T Consensus       208 ----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          208 ----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             ----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                34568999999999987 33332   347899999999998853  568889999999999999988888888888


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~  353 (566)
                      ++|+.|++++|.+...+.       .+..+++|++|++++|.+.                          .+|..+..++
T Consensus       278 ~~L~~L~Ls~N~l~~l~~-------~~~~l~~L~~L~Ls~N~l~--------------------------~i~~~~~~l~  324 (597)
T 3oja_B          278 QRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL--------------------------HVERNQPQFD  324 (597)
T ss_dssp             SSCCEEECTTSCCCEEEC-------SSSCCTTCCEEECCSSCCC--------------------------CCGGGHHHHT
T ss_pred             cCCCEEECCCCCCCCCCc-------ccccCCCCcEEECCCCCCC--------------------------ccCcccccCC
Confidence            888888888888765432       2345677777777777665                          2333445566


Q ss_pred             CCCEEecCCccccccchhhccCCCCCCEEEccCCccc
Q 040451          354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLR  390 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  390 (566)
                      +|+.|++++|.+++.   .+..+++|++|++++|++.
T Consensus       325 ~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          325 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred             CCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence            666666666666533   2455566666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-33  Score=288.01  Aligned_cols=362  Identities=20%  Similarity=0.199  Sum_probs=188.0

Q ss_pred             CCCCEEecccCcCCCCCchh-hcCCCCCCEEEeeCCcccc----cCcccccccCccceeeccccccccch-hhh-hCCCC
Q 040451          130 LMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGG----RIPSTISHVRNLISFNVARNQFSGMI-PLI-YNISS  202 (566)
Q Consensus       130 ~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l-~~~~~  202 (566)
                      ++|++|++++++++...... +..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+.. ..+ ..++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34566666666655322222 4555666666666666542    12333444555555555555544322 111 11220


Q ss_pred             CcEEEcccCcCcccCCccccCCCCCccEEEccCCcccc----ccccccccCCCCceEecccccccccccccc-----cCC
Q 040451          203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINGNLFSGKVSINF-----SRL  273 (566)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~  273 (566)
                                           ..++|++|++++|.++.    ..+..+..+++|++|++++|.+.+..+..+     ...
T Consensus        83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  141 (461)
T 1z7x_W           83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ  141 (461)
T ss_dssp             ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence                                 01146666666665553    234556666666666666666543333222     224


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhc----cccccEEEccccCccCc----c
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL----SITMTEIANGSNQISGT----I  345 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~----~  345 (566)
                      ++|++|++++|.+......  .+...+..+++|++|++++|.+.+..+..+...    .+.+++|++++|.+++.    +
T Consensus       142 ~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            5677777777766543321  122445566778888888777665544433331    23666666666666542    3


Q ss_pred             chhhhccCCCCEEecCCccccccch-----hhccCCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcceec
Q 040451          346 PDVIANLVNLNALGVESNQLAGTIP-----LAIGELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGK  416 (566)
Q Consensus       346 ~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~  416 (566)
                      +..+..+++|++|++++|.+++...     ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            5556667777777777776654321     2223467777777777776643    455555667777777777766543


Q ss_pred             CCcccc-----CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC
Q 040451          417 IPPSIG-----NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP  491 (566)
Q Consensus       417 ~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  491 (566)
                      .+..+.     ..++|+.|++++|.+++.....                     ++..+..+++|++|++++|.+.+..+
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSH---------------------FSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH---------------------HHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHH---------------------HHHHHhhCCCccEEEccCCccccccH
Confidence            332222     2246666666666665332111                     12223344555555555555443222


Q ss_pred             cCCcC-----CCCCcEEeCCCCcccc----cCCcCCCCCCCCCEEeCCCCccc
Q 040451          492 TTLGG-----CTSLEYLGMQDNSFTR----SIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       492 ~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..+..     .++|++|++++|.+++    .++..+..+++|+.|++++|+++
T Consensus       359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            21211     3455555555555553    33444444555555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.9e-30  Score=249.63  Aligned_cols=258  Identities=29%  Similarity=0.457  Sum_probs=220.1

Q ss_pred             CCCCEEEcccCcccc--ccchhHhhccccccEEEccc-cCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCC
Q 040451          304 TKLEVLDLHSNRFGG--VLPFSLANLSITMTEIANGS-NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQ  380 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      .++++|+++++.+.+  ..|..+..+ +.++.|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            356666666666665  555555554 4666666663 666667788888999999999999999888888899999999


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCC-CCcEEEccCCcccccCchhhhccCCcCcEEEccC
Q 040451          381 MLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQ-NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD  459 (566)
Q Consensus       381 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~  459 (566)
                      +|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+.+.+|..+..+.  ++.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence            999999999888888999999999999999999988999998888 999999999999888888888776  69999999


Q ss_pred             CcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451          460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       460 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      |.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999988888999999999999999999865555 8889999999999999998899999999999999999999998888


Q ss_pred             ccCcCCCCCCeeeCCCCc-CcccCCCCC
Q 040451          540 QYLENLSFLSFLNLSYNH-FEGKVPIEC  566 (566)
Q Consensus       540 ~~l~~~~~L~~L~l~~~~-l~~~~p~~~  566 (566)
                      .. ..+++|+.+++++|+ +.|.-...|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CC-ccccccChHHhcCCCCccCCCCCCC
Confidence            86 789999999999998 555322345

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.6e-33  Score=287.67  Aligned_cols=382  Identities=15%  Similarity=0.116  Sum_probs=220.2

Q ss_pred             CcEEEEEcCCCCCcccCcc-cCcCCCCCcEEEcCCCCCcc----ccCccccCCCCCCEEeCCCccCCCCCCccc-ccCC-
Q 040451           34 QRVTGLDLRQQSVGGVLSP-FVGNLSFPRSINLPNKSFRG----EIPHEVSNLFRLQNLTLTNNYFSGKILTDL-SHCS-  106 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-  106 (566)
                      .++++|+++++.+.+.... .+..+++|++|+|++|.+.+    .++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5678888888887654433 36778888888888888774    356667777888888888887764333333 2344 


Q ss_pred             ---CCCEEEccCCcccc----cCCccccCCCCCCEEecccCcCCCCCchhhc-----CCCCCCEEEeeCCcccccC----
Q 040451          107 ---NVMKFEASNNKLEA----EIPVEIGNLLMLQILNIAENHLKGQLPASIG-----NLSALQEIDVRGNRLGGRI----  170 (566)
Q Consensus       107 ---~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----  170 (566)
                         +|++|++++|.+++    .++..+.++++|++|++++|.++...+..+.     ..++|++|++++|.++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888887763    3466677777888888887777643333332     2456777777777766432    


Q ss_pred             cccccccCccceeeccccccccch-hhhh-----CCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccc
Q 040451          171 PSTISHVRNLISFNVARNQFSGMI-PLIY-----NISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQD  244 (566)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~-~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  244 (566)
                      +..+..+++|+.|++++|.+.+.. ..+.     ..++|++|++++|.+.+.-..                     ..+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---------------------~l~~  221 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---------------------DLCG  221 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---------------------HHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH---------------------HHHH
Confidence            334455666777777766655432 1111     233455555555444321000                     1233


Q ss_pred             ccccCCCCceEecccccccccc-----cccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccc
Q 040451          245 SLSNATNLQGLEINGNLFSGKV-----SINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV  319 (566)
Q Consensus       245 ~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  319 (566)
                      .+..+++|++|++++|.+.+..     +..+..+++|+.|++++|.+......  .+...+..+++|++|++++|.+.+.
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchH
Confidence            3444555555555555544321     11122355566666666655432111  1123344566666666666666544


Q ss_pred             cchhHhhc----cccccEEEccccCccCc----cchhhhccCCCCEEecCCccccccchhhccC-----CCCCCEEEccC
Q 040451          320 LPFSLANL----SITMTEIANGSNQISGT----IPDVIANLVNLNALGVESNQLAGTIPLAIGE-----LKSLQMLFLNE  386 (566)
Q Consensus       320 ~~~~~~~~----~~~l~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~  386 (566)
                      .+..+...    .+++++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            43333332    13555555555555543    3445566777788888777776554433322     56777777777


Q ss_pred             Ccccc----cCCccccCCCCCCeEecccCcceecCCcccc-----CCCCCcEEEccCCccc
Q 040451          387 NFLRG----TIPSSLGNLTLLTQLILEVNNLQGKIPPSIG-----NCQNLILLTTRKNKLS  438 (566)
Q Consensus       387 ~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~l~  438 (566)
                      |.+++    .++..+..+++|++|++++|++++.....+.     ....|+.|.+.++...
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            77764    4566666777777777777776643221111     1235666666665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.3e-29  Score=240.38  Aligned_cols=289  Identities=20%  Similarity=0.236  Sum_probs=179.9

Q ss_pred             CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEEC
Q 040451          202 SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL  281 (566)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  281 (566)
                      +++.++++++.+. .+|..+   .+.++.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666665554 444332   245666666666665554445555666666666666555444555555555555555


Q ss_pred             CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecC
Q 040451          282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE  361 (566)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  361 (566)
                      ++|.+...+..         -.++|++|++++                         |.+.+..+..+..+++|+.|+++
T Consensus       108 s~n~l~~l~~~---------~~~~L~~L~l~~-------------------------n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A          108 SKNQLKELPEK---------MPKTLQELRVHE-------------------------NEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CSSCCSBCCSS---------CCTTCCEEECCS-------------------------SCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCcCCccChh---------hcccccEEECCC-------------------------CcccccCHhHhcCCccccEEECC
Confidence            55554432210         012333333333                         33333334455666677777777


Q ss_pred             Cccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451          362 SNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG  439 (566)
Q Consensus       362 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~  439 (566)
                      +|.+..  ..+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+  
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--  228 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--  228 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC--
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC--
Confidence            766643  34455666666667776666665 3333322  5666666666666655555566666665555555554  


Q ss_pred             cCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451          440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS  519 (566)
Q Consensus       440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  519 (566)
                                             .+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       229 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          229 -----------------------SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             -----------------------CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             -----------------------ceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence                                   4444456788899999999999998 7888899999999999999999976666664


Q ss_pred             C------CCCCCEEeCCCCcccc--cCCccCcCCCCCCeeeCCCCc
Q 040451          520 S------LKSITELDLSRNNLSG--HIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       520 ~------l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      .      .+.|+.|++++|++..  ..|..+..+++++.++|++|+
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3      4789999999999863  556788889999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=5.6e-31  Score=254.69  Aligned_cols=256  Identities=18%  Similarity=0.246  Sum_probs=166.8

Q ss_pred             ccCCC-CCCCCCCCC----CCCCCCCCcccCccCC--------CCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCC
Q 040451            2 KSQLQ-DPLGVTSSW----NNSINLCQWTGVTCGH--------RRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNK   68 (566)
Q Consensus         2 ~~~~~-~~~~~~~~w----~~~~~~c~w~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~   68 (566)
                      |+++. ||.+...+|    +.+..+|.|.|+.|..        ...+|+.|+++++.+. .+|..++++++|++|+|++|
T Consensus        36 k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n  114 (328)
T 4fcg_A           36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA  114 (328)
T ss_dssp             HHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS
T ss_pred             HHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC
Confidence            44454 777777888    5678899999999842        2257888888888877 56777777888888888888


Q ss_pred             CCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccC---------CCCCCEEeccc
Q 040451           69 SFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGN---------LLMLQILNIAE  139 (566)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---------l~~L~~L~l~~  139 (566)
                      .+. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|...+.+|..++.         +++|++|++++
T Consensus       115 ~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~  192 (328)
T 4fcg_A          115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW  192 (328)
T ss_dssp             CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred             Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence            877 77777777788888888888777 66777777777777777777666666665543         55555555555


Q ss_pred             CcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCc
Q 040451          140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPL  219 (566)
Q Consensus       140 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  219 (566)
                      |+++ .+|..+..+++|++|++++|.+.                        +.+..+..+++|++|++++|.+.+.+|.
T Consensus       193 n~l~-~lp~~l~~l~~L~~L~L~~N~l~------------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          193 TGIR-SLPASIANLQNLKSLKIRNSPLS------------------------ALGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             ECCC-CCCGGGGGCTTCCEEEEESSCCC------------------------CCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             CCcC-cchHhhcCCCCCCEEEccCCCCC------------------------cCchhhccCCCCCEEECcCCcchhhhHH
Confidence            5555 44545555555555555555544                        4434444455555555555555545554


Q ss_pred             cccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451          220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       220 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      .+. .+++|++|++++|.+....|..+..+++|+.|++++|.+.+..|..+..+++++.+.+..+.+
T Consensus       248 ~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          248 IFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             Hhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            443 566666666666665555665666666666666666666666666666666666666665443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.5e-29  Score=244.47  Aligned_cols=288  Identities=21%  Similarity=0.251  Sum_probs=184.3

Q ss_pred             CCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEEC
Q 040451          202 SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNL  281 (566)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  281 (566)
                      +++.++++++.+. .+|..+   .++++.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4556666655554 444433   245566666666555444445555556666666655555444555555555555555


Q ss_pred             CCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecC
Q 040451          282 GENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE  361 (566)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  361 (566)
                      ++|.+...+..       +  .++|++|+++                         +|.+.+..+..+..+++|+.|+++
T Consensus       110 ~~n~l~~l~~~-------~--~~~L~~L~l~-------------------------~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A          110 SKNHLVEIPPN-------L--PSSLVELRIH-------------------------DNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             CSSCCCSCCSS-------C--CTTCCEEECC-------------------------SSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CCCcCCccCcc-------c--cccCCEEECC-------------------------CCccCccCHhHhCCCccCCEEECC
Confidence            55554432220       0  0334444444                         333433334456677777777777


Q ss_pred             Cccccc--cchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccc
Q 040451          362 SNQLAG--TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG  439 (566)
Q Consensus       362 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~  439 (566)
                      +|.++.  ..+..+..+ +|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+. 
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-  230 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-  230 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-
Confidence            777753  445555555 7777777777776 3444332  57777777777776555566666666666666666554 


Q ss_pred             cCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451          440 TVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLS  519 (566)
Q Consensus       440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  519 (566)
                                              +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       231 ------------------------~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          231 ------------------------MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             ------------------------CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             ------------------------cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence                                    344456778889999999999998 7888889999999999999999976666665


Q ss_pred             C------CCCCCEEeCCCCccc--ccCCccCcCCCCCCeeeCCCCc
Q 040451          520 S------LKSITELDLSRNNLS--GHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       520 ~------l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      .      .+.|+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            4      367999999999987  5677888899999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.1e-28  Score=239.96  Aligned_cols=294  Identities=18%  Similarity=0.186  Sum_probs=159.1

Q ss_pred             EEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccC
Q 040451           36 VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN  115 (566)
Q Consensus        36 v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~  115 (566)
                      ++.++++++.+.. +|..+.  +++++|+|++|.+++..+..+.++++|++|++++|.++...|..+..+++|++|++++
T Consensus        33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            3445555555542 333222  4566666666666543444556666666666666666544455566666666666666


Q ss_pred             CcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccc--cCcccccccCccceeeccccccccc
Q 040451          116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG--RIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      |.++ .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+..  ..+..+.++++|+.|+++       
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-------  179 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-------  179 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-------
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-------
Confidence            6555 3444333  456666666665554444445555666666666555532  333444444555555444       


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                                      +|.+. .+|...   .++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       180 ----------------~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          180 ----------------DTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             ----------------SSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ----------------CCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence                            44444 333332   2566666666666665555666666666667776666665555556666


Q ss_pred             CCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccC
Q 040451          274 QNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~  353 (566)
                      ++|+.|++++|.+...+.       .+..+++|++|++++|.+++..+..+...                   .......
T Consensus       240 ~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~  293 (330)
T 1xku_A          240 PHLRELHLNNNKLVKVPG-------GLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKA  293 (330)
T ss_dssp             TTCCEEECCSSCCSSCCT-------TTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSC
T ss_pred             CCCCEEECCCCcCccCCh-------hhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccc
Confidence            667777777666653322       34556677777777766664433322111                   0011234


Q ss_pred             CCCEEecCCccccc--cchhhccCCCCCCEEEccCCc
Q 040451          354 NLNALGVESNQLAG--TIPLAIGELKSLQMLFLNENF  388 (566)
Q Consensus       354 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~  388 (566)
                      .++.+++++|.+..  ..+..+..+.+++.+++++|+
T Consensus       294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccceEeecCcccccccCccccccccceeEEEecccC
Confidence            56666666665542  344556666667777766653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.6e-29  Score=242.65  Aligned_cols=293  Identities=20%  Similarity=0.238  Sum_probs=162.0

Q ss_pred             CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecc
Q 040451           59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA  138 (566)
Q Consensus        59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~  138 (566)
                      +++.++++++.++ .+|..+.  +++++|++++|.++...+..+..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3455555555544 4444332  355555555555554444445555555555555555554444555555555555555


Q ss_pred             cCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc--h-hhhhCCCCCcEEEcccCcCcc
Q 040451          139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM--I-PLIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       139 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +|.++ .+|..+.  ++|++|++++|.+....+..+.++++|+.|++++|.+...  . ..+..+ +|++|++++|.+. 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence            55555 3443333  4555555555555543334455555555555555555321  1 223333 5566666666555 


Q ss_pred             cCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChh
Q 040451          216 SLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLD  295 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (566)
                      .+|..+.   ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+.    
T Consensus       186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----  258 (332)
T 2ft3_A          186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----  258 (332)
T ss_dssp             SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred             ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence            3444322   567777777777776666667777777777777777776666667777777777777777664332    


Q ss_pred             hhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccc--ccchhhc
Q 040451          296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLA--GTIPLAI  373 (566)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~  373 (566)
                         .+..+++|++|++++|.+++..+..+....                   .-.....|+.+++.+|.+.  +..+..+
T Consensus       259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~  316 (332)
T 2ft3_A          259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-------------------FGVKRAYYNGISLFNNPVPYWEVQPATF  316 (332)
T ss_dssp             ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-------------------CCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred             ---hhhcCccCCEEECCCCCCCccChhHccccc-------------------cccccccccceEeecCcccccccCcccc
Confidence               355677777777777777654433322210                   0011345666777776655  3455566


Q ss_pred             cCCCCCCEEEccCCc
Q 040451          374 GELKSLQMLFLNENF  388 (566)
Q Consensus       374 ~~~~~L~~L~l~~~~  388 (566)
                      ..+++|+.+++++|+
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            667777777776653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=4.6e-32  Score=286.02  Aligned_cols=454  Identities=13%  Similarity=0.081  Sum_probs=248.1

Q ss_pred             CCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc---cccCccc------------cCCC
Q 040451           18 SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR---GEIPHEV------------SNLF   82 (566)
Q Consensus        18 ~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~~------------~~l~   82 (566)
                      +..|++|.++.+..    -+.+.+.. ......+..+.++++|++|+|+++...   +.+|..+            ..++
T Consensus        38 s~vck~W~~~~~~~----~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           38 SLVCRRWFKIDSET----REHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             TTSCHHHHHHHHHH----CCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHhHHHHHhhhcc----ccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            44566999886532    23344432 233334556688999999999876432   1222222            2677


Q ss_pred             CCCEEeCCCccCCCCCCccccc-CCC-CCEEEccCCcc-cc-cCCccccCCCCCCEEecccCcCCCC----CchhhcCCC
Q 040451           83 RLQNLTLTNNYFSGKILTDLSH-CSN-VMKFEASNNKL-EA-EIPVEIGNLLMLQILNIAENHLKGQ----LPASIGNLS  154 (566)
Q Consensus        83 ~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~  154 (566)
                      +|++|++++|.+++..+..+.. +++ |++|++++|.. .. .++....++++|++|++++|.+++.    ++.....++
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~  192 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT  192 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence            8888888888776554555544 344 88888887762 11 1222234677888888888876644    233445677


Q ss_pred             CCCEEEeeCCcccc----cCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCc---ccCCccccCCCCC
Q 040451          155 ALQEIDVRGNRLGG----RIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH---GSLPLDNGVNLPN  227 (566)
Q Consensus       155 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~  227 (566)
                      +|++|++++|.+.+    .++..+.++++|+.|++++|.+.+.+..+..+++|++|+++.....   ......+ ..+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh-hcccc
Confidence            88888888777652    3333445677888888888777776666777777887777653221   1111122 24556


Q ss_pred             ccEEEccCCccccccccccccCCCCceEeccccccccccc-ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCC
Q 040451          228 LRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKL  306 (566)
Q Consensus       228 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (566)
                      |+.++++++... ..+..+..+++|++|++++|.+.+... ..+..+++|+.|++++ .+..     ..+......+++|
T Consensus       272 L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~-----~~l~~~~~~~~~L  344 (592)
T 3ogk_B          272 LCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGD-----RGLEVLAQYCKQL  344 (592)
T ss_dssp             CCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHH-----HHHHHHHHHCTTC
T ss_pred             ccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCH-----HHHHHHHHhCCCC
Confidence            666666554322 334445555566666666655432222 1134455555555552 1111     1111222344555


Q ss_pred             CEEEccc-----------CccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccC
Q 040451          307 EVLDLHS-----------NRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGE  375 (566)
Q Consensus       307 ~~L~l~~-----------~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  375 (566)
                      ++|++++           +.+++....                        .....+++|+.|++..+.+++.....+..
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~------------------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLI------------------------ALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHH------------------------HHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEEeecCccccccccccCccCHHHHH------------------------HHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            5555552           222222111                        22334566666666555555444444433


Q ss_pred             -CCCCCEEEcc----CCccccc-----CCccccCCCCCCeEecccCc--ceecCCccc-cCCCCCcEEEccCCcccccCc
Q 040451          376 -LKSLQMLFLN----ENFLRGT-----IPSSLGNLTLLTQLILEVNN--LQGKIPPSI-GNCQNLILLTTRKNKLSGTVP  442 (566)
Q Consensus       376 -~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~  442 (566)
                       +++|++|+++    .+.+++.     ++..+..+++|++|+++.|.  +++..+..+ ..+++|++|++++|.+++...
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             5666666664    3344421     22234456666666665433  333322222 236667777777666654333


Q ss_pred             hhhhccCCcCcEEEccCCcceecC-CccccCCCCCCEEEccCCcccccCCcCC-cCCCCCcEEeCCCC
Q 040451          443 RQLLHIITLPVLLDLSDNLLNGHF-PAEVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDN  508 (566)
Q Consensus       443 ~~~~~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  508 (566)
                      ..+....+.++.|++++|.+++.. +..+..+++|++|++++|.++......+ ..++.+....+..+
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            333232333467777777654332 2234567888899999888875433323 45677766666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.2e-30  Score=270.33  Aligned_cols=230  Identities=12%  Similarity=0.033  Sum_probs=121.7

Q ss_pred             CCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCC-----------ccccccch
Q 040451          302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVES-----------NQLAGTIP  370 (566)
Q Consensus       302 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~  370 (566)
                      .+++|++|++++|.+++.....+....++++.|++.++...+.++.....+++|++|++++           +.+++...
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            3444555555444433222222122223444444442211122333345667777777773           34443322


Q ss_pred             -hhccCCCCCCEEEccCCcccccCCccccC-CCCCCeEecc----cCcceec-----CCccccCCCCCcEEEccCCc--c
Q 040451          371 -LAIGELKSLQMLFLNENFLRGTIPSSLGN-LTLLTQLILE----VNNLQGK-----IPPSIGNCQNLILLTTRKNK--L  437 (566)
Q Consensus       371 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~l~~~~--l  437 (566)
                       .....+++|++|+++.+.+++..+..+.. +++|+.|+++    .+.+++.     ++..+..+++|+.|+++.|.  +
T Consensus       371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred             HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence             22345778888888777776655555554 7788888886    3445432     22235567778888776543  5


Q ss_pred             cccCchhhhccCCcCcEEEccCCcceec-CCccccCCCCCCEEEccCCccccc-CCcCCcCCCCCcEEeCCCCcccccCC
Q 040451          438 SGTVPRQLLHIITLPVLLDLSDNLLNGH-FPAEVGNLKNLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFTRSIP  515 (566)
Q Consensus       438 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~  515 (566)
                      ++.....+....+.++.|++++|.+++. .+..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++...
T Consensus       451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence            5444445554444457777777766542 222345667777777777776533 22333456677777777777665433


Q ss_pred             cCC-CCCCCCCEEeCCC
Q 040451          516 STL-SSLKSITELDLSR  531 (566)
Q Consensus       516 ~~l-~~l~~L~~L~l~~  531 (566)
                      ..+ ..+|.+....+..
T Consensus       531 ~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          531 DLMQMARPYWNIELIPS  547 (592)
T ss_dssp             TGGGGCCTTEEEEEECC
T ss_pred             HHHHHhCCCcEEEEecC
Confidence            322 2345554444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.6e-29  Score=241.27  Aligned_cols=284  Identities=15%  Similarity=0.200  Sum_probs=197.1

Q ss_pred             cCCCCCCCCCCCCCC--CCCCCCcccCccCCCCCcEEEEEcCCCCCcccC----ccc--CcCCCCCcEEEcCCCCCcccc
Q 040451            3 SQLQDPLGVTSSWNN--SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVL----SPF--VGNLSFPRSINLPNKSFRGEI   74 (566)
Q Consensus         3 ~~~~~~~~~~~~w~~--~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~----~~~--l~~l~~L~~L~L~~~~~~~~~   74 (566)
                      .++.|+..+++.|++  ..++|.|.+.-|.....     .-..+.+.|..    +..  -...+++++|+|++|.+. .+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l   96 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF   96 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence            345577778888976  34788887655521101     01112222211    111  123456666666666665 56


Q ss_pred             CccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCC
Q 040451           75 PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS  154 (566)
Q Consensus        75 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~  154 (566)
                      |..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|++.+.+|..+..  
T Consensus        97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~--  172 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS--  172 (328)
T ss_dssp             CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE--
T ss_pred             ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh--
Confidence            655666666666666666665 45555555666666666666555 45555555555555555555544444443322  


Q ss_pred             CCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451          155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS  234 (566)
Q Consensus       155 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  234 (566)
                          .         ..+..+.++++|+.|++++|.+...+..+..+++|++|++++|.+. .++..+. .+++|++|+++
T Consensus       173 ----~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls  237 (328)
T 4fcg_A          173 ----T---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLR  237 (328)
T ss_dssp             ----E---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECT
T ss_pred             ----c---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECc
Confidence                0         1112345588888888888888877777888999999999999998 5666655 89999999999


Q ss_pred             CCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451          235 GNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSN  314 (566)
Q Consensus       235 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  314 (566)
                      +|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+      ..+..+++++.+.+..+
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP------~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC------GGGGGSCTTCEEECCGG
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc------HHHhhccCceEEeCCHH
Confidence            999988889999999999999999999988999999999999999999999887777      67889999999999987


Q ss_pred             ccc
Q 040451          315 RFG  317 (566)
Q Consensus       315 ~~~  317 (566)
                      .+.
T Consensus       312 ~~~  314 (328)
T 4fcg_A          312 LQA  314 (328)
T ss_dssp             GSC
T ss_pred             HHH
Confidence            654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=231.04  Aligned_cols=284  Identities=15%  Similarity=0.153  Sum_probs=181.7

Q ss_pred             CCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccC
Q 040451           15 WNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF   94 (566)
Q Consensus        15 w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   94 (566)
                      |......|.|.++           ++.+++.++. +|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus        23 ~~~~~~~C~~~~~-----------c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           23 SNQASLSCDRNGI-----------CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             ----CCEECTTSE-----------EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCccCCCCCCCeE-----------eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence            4455566777653           4555666653 444333  4677777777777644444677777777777777777


Q ss_pred             CCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCch--hhcCCCCCCEEEeeCC-cccccCc
Q 040451           95 SGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPA--SIGNLSALQEIDVRGN-RLGGRIP  171 (566)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~-~~~~~~~  171 (566)
                      ++..+..+..+++|++|++++|.+++..+..++++++|++|++++|+++ .++.  .+..+++|++|++++| .+....+
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCH
Confidence            6555666777777777777777776433334677777777777777776 3443  5667777777777776 3554555


Q ss_pred             ccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccccccccc---c
Q 040451          172 STISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSL---S  247 (566)
Q Consensus       172 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~  247 (566)
                      ..+.++++|+.|++++|.+.+.. ..+..+++|++|++++|.+. .++..++..+++|++|++++|.++...+..+   .
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            66777777777777777766653 56666777777777777764 4444443346777777777777665433322   2


Q ss_pred             cCCCCceEecccccccc----cccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc
Q 040451          248 NATNLQGLEINGNLFSG----KVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL  320 (566)
Q Consensus       248 ~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  320 (566)
                      ..+.++.++++++.+.+    ..+..+..+++|+.|++++|.+...+.      ..+..+++|++|++++|++....
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence            34556667777666543    234556777888888888888775544      33567788888888888877543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=7.2e-30  Score=269.40  Aligned_cols=462  Identities=15%  Similarity=0.124  Sum_probs=229.5

Q ss_pred             CCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc---C------------ccccCCC
Q 040451           18 SINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI---P------------HEVSNLF   82 (566)
Q Consensus        18 ~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~---~------------~~~~~l~   82 (566)
                      +..|++|.++..    ...+.++++..... .....+.++++|++|+++++.....+   |            .....++
T Consensus        31 s~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           31 SLVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             HTSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            345678988732    33456666654322 22345678889999999887532221   1            1123566


Q ss_pred             CCCEEeCCCccCCCCCCcccc-cCCCCCEEEccCC-ccccc-CCccccCCCCCCEEecccCcCCCCCchhh----cCCCC
Q 040451           83 RLQNLTLTNNYFSGKILTDLS-HCSNVMKFEASNN-KLEAE-IPVEIGNLLMLQILNIAENHLKGQLPASI----GNLSA  155 (566)
Q Consensus        83 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l----~~l~~  155 (566)
                      +|++|++++|.+++..+..+. .+++|++|++++| .+.+. ++..+.++++|++|++++|.+++..+..+    ..+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            777777777766654444444 5677777777776 33321 23333466677777777766554333333    24556


Q ss_pred             CCEEEeeCCc--ccc-cCcccccccCccceeecccc-ccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEE
Q 040451          156 LQEIDVRGNR--LGG-RIPSTISHVRNLISFNVARN-QFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF  231 (566)
Q Consensus       156 L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (566)
                      |++|++++|.  +.. .+...+..+++|+.|++++| .+.+....+..+++|++|++..+...                 
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------  248 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------  248 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------
Confidence            7777776664  111 11111234466666666665 23333344555666666654433210                 


Q ss_pred             EccCCccccccccccccCCCCceE-ecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEE
Q 040451          232 SISGNNLTGSLQDSLSNATNLQGL-EINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLD  310 (566)
Q Consensus       232 ~l~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  310 (566)
                       +..+.+.. .+..+.++++|+.+ .+.+... +..+..+..+++|+.|++++|.+...     .....+..+++|++|+
T Consensus       249 -~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~  320 (594)
T 2p1m_B          249 -VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLW  320 (594)
T ss_dssp             -CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEE
T ss_pred             -cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEe
Confidence             00111111 11233444444444 2221111 11222222344555555555443211     1112234455555555


Q ss_pred             cccCccccccchhHhhccccccEEEccc---------cCccCccchhh-hccCCCCEEecCCccccccchhhcc-CCCCC
Q 040451          311 LHSNRFGGVLPFSLANLSITMTEIANGS---------NQISGTIPDVI-ANLVNLNALGVESNQLAGTIPLAIG-ELKSL  379 (566)
Q Consensus       311 l~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L  379 (566)
                      +++| +.+.....+....++|++|++.+         +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|
T Consensus       321 l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L  399 (594)
T 2p1m_B          321 VLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM  399 (594)
T ss_dssp             EEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred             CcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence            5554 32222222222234555555522         22222211122 2366666666666666544444443 36667


Q ss_pred             CEEEcc--C----Ccccc-----cCCccccCCCCCCeEecccCcceecCCccccC-CCCCcEEEccCCcccccCchhhhc
Q 040451          380 QMLFLN--E----NFLRG-----TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN-CQNLILLTTRKNKLSGTVPRQLLH  447 (566)
Q Consensus       380 ~~L~l~--~----~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~  447 (566)
                      ++|+++  +    +.+++     .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+..
T Consensus       400 ~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~  478 (594)
T 2p1m_B          400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS  478 (594)
T ss_dssp             CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred             ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence            777776  2    33331     1112245566777777765 444333333333 667777777777765544444433


Q ss_pred             cCCcCcEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCC-cCCCCCcEEeCCCCccc
Q 040451          448 IITLPVLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       448 ~~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~  511 (566)
                      ..+.++.|++++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+...
T Consensus       479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            333447777777776433222 23456788888888887754333333 45677766666555433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.3e-26  Score=221.00  Aligned_cols=248  Identities=22%  Similarity=0.230  Sum_probs=122.8

Q ss_pred             CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCc--cchhhhccCC
Q 040451          277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGT--IPDVIANLVN  354 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~~l~~  354 (566)
                      +.++++++.+...+..         -.+++++|++++|.+....+..+..+ ++++.|++++|.+...  .+..+..+++
T Consensus        10 ~~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             TEEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CEEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccc
Confidence            4566666665554331         12467777777776653333223332 3555555555554421  2334444555


Q ss_pred             CCEEecCCccccccchhhccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEecccCcceecCCccccCCCCCcEEEcc
Q 040451          355 LNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR  433 (566)
Q Consensus       355 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  433 (566)
                      |+.|++++|.+.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            5555555555542 23334455555555555555543222 344455555555555555554444445555555555555


Q ss_pred             CCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccccc
Q 040451          434 KNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS  513 (566)
Q Consensus       434 ~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  513 (566)
                      +|.+.+.                        ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       159 ~n~l~~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          159 GNSFQEN------------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             TCEEGGG------------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCccccc------------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence            5554431                        2334444555555555555555544444455555555555555555543


Q ss_pred             CCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCcCc
Q 040451          514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFE  559 (566)
Q Consensus       514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~  559 (566)
                      .+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|++.
T Consensus       215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            333444455555555555555544444444442 4555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5.4e-26  Score=218.42  Aligned_cols=226  Identities=18%  Similarity=0.213  Sum_probs=147.6

Q ss_pred             CCCcEEEcCCCCCccccCc-cccCCCCCCEEeCCCccCCCC--CCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451           58 SFPRSINLPNKSFRGEIPH-EVSNLFRLQNLTLTNNYFSGK--ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI  134 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  134 (566)
                      ++|++|+|++|.+. .+|. .+.++++|++|++++|.++..  .+..+..+++|++|++++|.+. .+|..+.++++|++
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            68899999999888 5554 478889999999999988632  2455667888888888888887 56677888888888


Q ss_pred             EecccCcCCCCCc-hhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc--chhhhhCCCCCcEEEcccC
Q 040451          135 LNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG--MIPLIYNISSLQYIFIHTN  211 (566)
Q Consensus       135 L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~l~~~  211 (566)
                      |++++|.++...+ ..+..+++|++|++++|.+....+..+.++++|+.|++++|.+.+  .+..+..+++|++|++++|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            8888888874333 467788888888888888876777777777888888888777664  2244555555555555555


Q ss_pred             cCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCC-CCCEEECCCCcC
Q 040451          212 RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ-NLSRLNLGENNL  286 (566)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  286 (566)
                      .+.+..+..+. .+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+
T Consensus       186 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          186 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            55533232222 445555555555555544443444455555555555554444444444332 444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.4e-25  Score=227.57  Aligned_cols=228  Identities=22%  Similarity=0.232  Sum_probs=170.5

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      .++.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            45555555555555555667777778888888777776666777777788888888887775555567777788888888


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|++....+..|..+++|+.|++++|...+.++...+.....++.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence            88777666667777788888888775544455554444344447788888877743 3 477788888888888888877


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+|++|++.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            7888888888888888888888877888888888888888888888777777788888888888888654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.5e-26  Score=225.34  Aligned_cols=181  Identities=18%  Similarity=0.174  Sum_probs=119.6

Q ss_pred             cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451           55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  134 (566)
                      ..|+.....+.+++.++ .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+++..+..|+++++|++
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            44556666788888887 7776554  58888999988888655567888888888888888888666777888888888


Q ss_pred             EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc-ccccccCccceeeccccc-cccch-hhhhCCCCCcEEEcccC
Q 040451          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVARNQ-FSGMI-PLIYNISSLQYIFIHTN  211 (566)
Q Consensus       135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~l~~~  211 (566)
                      |++++|+++...+..+..+++|++|++++|.+....+ ..+.++++|+.|++++|. +.... ..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            8888888884444447888888888888888774333 356677777777777663 43332 33444455555555554


Q ss_pred             cCcccCCccccCCCCCccEEEccCCccc
Q 040451          212 RFHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      .+.+..+..+. .+++|++|++++|.+.
T Consensus       185 ~l~~~~~~~l~-~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          185 DLQSYEPKSLK-SIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TCCEECTTTTT-TCSEEEEEEEECSCST
T ss_pred             CcCccCHHHHh-ccccCCeecCCCCccc
Confidence            44433232222 3444444444444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.9e-28  Score=258.47  Aligned_cols=401  Identities=13%  Similarity=0.115  Sum_probs=256.7

Q ss_pred             CcEEEEEcCCCCCcccC---------------cccCcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCc-cCCC
Q 040451           34 QRVTGLDLRQQSVGGVL---------------SPFVGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNN-YFSG   96 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~---------------~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~   96 (566)
                      +++++++++++......               +.....+++|++|+|+++.+++..+..+. .+++|++|++++| .++.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            67899999986532211               11235788999999999998877666665 6899999999999 5543


Q ss_pred             C-CCcccccCCCCCEEEccCCcccccCCccc----cCCCCCCEEecccCc--CCCC-CchhhcCCCCCCEEEeeCCcccc
Q 040451           97 K-ILTDLSHCSNVMKFEASNNKLEAEIPVEI----GNLLMLQILNIAENH--LKGQ-LPASIGNLSALQEIDVRGNRLGG  168 (566)
Q Consensus        97 ~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--i~~~-~~~~l~~l~~L~~L~l~~~~~~~  168 (566)
                      . .+..+..+++|++|++++|.+++..+..+    ..+++|++|+++++.  +... +...+..+++|++|++++|....
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence            2 33445589999999999999775444333    477899999999986  2211 22223567999999999984333


Q ss_pred             cCcccccccCccceeecccc-------ccccchhhhhCCCCCcEE-EcccCcCcccCCccccCCCCCccEEEccCCcccc
Q 040451          169 RIPSTISHVRNLISFNVARN-------QFSGMIPLIYNISSLQYI-FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~~-------~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (566)
                      .++..+..+++|+.|+++.+       .+.+....+.++++|+.+ .+..... +.++.... .+++|++|++++|.++.
T Consensus       226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCH
T ss_pred             HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCH
Confidence            46777888999999996554       344444677889999999 3333222 23332222 57899999999998764


Q ss_pred             ccc-cccccCCCCceEeccccccccccc-ccccCCCCCCEEECCCCcC----CCCCCCChhhhhhhcCCCCCCEEEcccC
Q 040451          241 SLQ-DSLSNATNLQGLEINGNLFSGKVS-INFSRLQNLSRLNLGENNL----GTGTANDLDFITLLTNCTKLEVLDLHSN  314 (566)
Q Consensus       241 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~l~~~~~L~~L~l~~~  314 (566)
                      ... ..+..+++|++|++++| +.+... .....+++|+.|++..+..    ......+.........+++|++|.+..+
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~  382 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR  382 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence            432 23567899999999988 332222 2224578899998854310    0001111122222345788888888878


Q ss_pred             ccccccchhHhhccccccEEEcc--c----cCccC-----ccchhhhccCCCCEEecCCccccccchhhccC-CCCCCEE
Q 040451          315 RFGGVLPFSLANLSITMTEIANG--S----NQISG-----TIPDVIANLVNLNALGVESNQLAGTIPLAIGE-LKSLQML  382 (566)
Q Consensus       315 ~~~~~~~~~~~~~~~~l~~l~l~--~----~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L  382 (566)
                      .+++.....+....++++.|++.  +    +.+++     .++..+..+++|+.|++++ .+++.....+.. +++|++|
T Consensus       383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred             CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence            87766665555545677777777  2    33331     1122245666777777765 444443344433 6677777


Q ss_pred             EccCCcccccCCccc-cCCCCCCeEecccCcceecCCc-cccCCCCCcEEEccCCccc
Q 040451          383 FLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPP-SIGNCQNLILLTTRKNKLS  438 (566)
Q Consensus       383 ~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~l~  438 (566)
                      ++++|.+++..+..+ ..+++|++|++++|++++.... ....+++|+.|++++|+++
T Consensus       462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            777777654433333 4567777777777766433222 2334666777777776664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=226.09  Aligned_cols=228  Identities=21%  Similarity=0.198  Sum_probs=160.2

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      .++.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44444444444444444566677777777777777776666667777777777777777765555566777777777777


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|++....+..|..+++|+.|++++|...+.++...+.....++.|++++|.+.. ++ .+..+++|++|++++|.+++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence            7777766666677777777777777544445554433333344777777777763 33 367778888888888888876


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .+..|.++++|++|++++|.+++..+..|..+++|+.|++++|+++...++.+..+++|+.|+|++|++.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            7777888888888888888888777777888888888888888888666677777888888888888653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.2e-25  Score=224.08  Aligned_cols=246  Identities=20%  Similarity=0.234  Sum_probs=181.0

Q ss_pred             CcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEeccc
Q 040451           60 PRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAE  139 (566)
Q Consensus        60 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  139 (566)
                      .+.++.++..++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456666666666 5665443  5777888888877766677777788888888888877766667777788888888888


Q ss_pred             CcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccc-ccccch-hhhhCCCCCcEEEcccCcCcccC
Q 040451          140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARN-QFSGMI-PLIYNISSLQYIFIHTNRFHGSL  217 (566)
Q Consensus       140 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~  217 (566)
                      |+++...+..+..+++|++|++++|.+....+..+.++++|+.|++++| .+.... ..+..+++|++|++++|.+. .+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence            8777555555777788888888888777655566777788888888774 344333 45667778888888888776 34


Q ss_pred             CccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhh
Q 040451          218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFI  297 (566)
Q Consensus       218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (566)
                      +. + ..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.....      
T Consensus       212 ~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------  283 (452)
T 3zyi_A          212 PN-L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------  283 (452)
T ss_dssp             CC-C-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------
T ss_pred             cc-c-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------
Confidence            42 2 367788888888888887777788888888888888888887777778888888888888888876655      


Q ss_pred             hhhcCCCCCCEEEcccCccc
Q 040451          298 TLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       298 ~~l~~~~~L~~L~l~~~~~~  317 (566)
                      ..+..+++|+.|++++|.+.
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEE
T ss_pred             HHhccccCCCEEEccCCCcC
Confidence            34567788888888888654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.5e-25  Score=223.05  Aligned_cols=227  Identities=22%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l  137 (566)
                      +++++|+|++|.+....+..|.++++|++|+|++|.++...+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34555555555555444444555555555555555555444444555555555555555554333334555555555555


Q ss_pred             ccCcCCCCCchhhcCCCCCCEEEeeCCc-ccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCccc
Q 040451          138 AENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS  216 (566)
Q Consensus       138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  216 (566)
                      ++|.++...+..+..+++|++|++++|. +....+..+.++++|+.|++++|.+...+ .+.                  
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~------------------  204 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT------------------  204 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCT------------------
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccC------------------
Confidence            5555553333344555555555555422 22222233444555555555555444322 233                  


Q ss_pred             CCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhh
Q 040451          217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDF  296 (566)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (566)
                             .+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.....     
T Consensus       205 -------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----  272 (440)
T 3zyj_A          205 -------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-----  272 (440)
T ss_dssp             -------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-----
T ss_pred             -------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-----
Confidence                   44555555555555554445555555555555555555555545555555555555555555554433     


Q ss_pred             hhhhcCCCCCCEEEcccCcc
Q 040451          297 ITLLTNCTKLEVLDLHSNRF  316 (566)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~  316 (566)
                       ..+..+++|+.|++++|.+
T Consensus       273 -~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          273 -DLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             -TTTSSCTTCCEEECCSSCE
T ss_pred             -hHhccccCCCEEEcCCCCc
Confidence             2344455555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.5e-25  Score=210.35  Aligned_cols=224  Identities=22%  Similarity=0.181  Sum_probs=135.1

Q ss_pred             CEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccC
Q 040451          307 EVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      +.++.+++.++.. |..   .++.+++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~i-p~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSC-CTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccC-CcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            5666666666533 221   235677777777777765556667777777777777777666666677777777777777


Q ss_pred             Cc-ccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceec
Q 040451          387 NF-LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH  465 (566)
Q Consensus       387 ~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      |. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence            75 554446666677777777777777766556666677777777777776653222223333332 5555555555544


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          466 FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       466 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            4444555555555555555555444555555555555555555555443344555555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.3e-27  Score=229.98  Aligned_cols=264  Identities=18%  Similarity=0.167  Sum_probs=159.4

Q ss_pred             CCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCc-cccCcccc-------CCCCCC
Q 040451           14 SWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR-GEIPHEVS-------NLFRLQ   85 (566)
Q Consensus        14 ~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~   85 (566)
                      +|.....|+.+..++......+++.+++++|.+  .+|..+...  |++|+|++|.+. ..++..+.       ++++|+
T Consensus        23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~   98 (312)
T 1wwl_A           23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ   98 (312)
T ss_dssp             CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred             chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence            455555555554433221123455566666666  455544433  677777777763 34555444       567777


Q ss_pred             EEeCCCccCCCCCCccc--ccCCCCCEEEccCCcccccCCccccCC-----CCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451           86 NLTLTNNYFSGKILTDL--SHCSNVMKFEASNNKLEAEIPVEIGNL-----LMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        86 ~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  158 (566)
                      +|++++|.+++..|..+  ..+++|++|++++|.+++. |..++++     ++|++|++++|++++..+..+..+++|++
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            77777777766666654  6777777777777777644 5556555     67777777777777555566777777777


Q ss_pred             EEeeCCccccc--Ccccc--cccCccceeeccccccccch----hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccE
Q 040451          159 IDVRGNRLGGR--IPSTI--SHVRNLISFNVARNQFSGMI----PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRY  230 (566)
Q Consensus       159 L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  230 (566)
                      |++++|++.+.  .+..+  .++++|+.|++++|.+....    ..+..+++|++|++++|.+.+..+...+..+++|++
T Consensus       178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence            77777765432  22223  56677777777777766332    223456677777777777665554333334566677


Q ss_pred             EEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCC
Q 040451          231 FSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLG  287 (566)
Q Consensus       231 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (566)
                      |++++|.++ ..|..+.  ++|+.|++++|.+++. |. +..+++|+.|++++|.+.
T Consensus       258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            777766666 3344343  5666666666666544 33 556666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=224.06  Aligned_cols=206  Identities=16%  Similarity=0.192  Sum_probs=132.4

Q ss_pred             hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451          349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI  428 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +..+++|+.|++++|.+++..     ..++|++|++++|.+++..+.   .+++|++|++++|++++..+..+..+++|+
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  147 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ  147 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred             hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence            344455555555555554321     225555555555555533221   245555666666655544444555556666


Q ss_pred             EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451          429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  508 (566)
                      .|++++|.+.+..+..+....+.++.|++++|.+.+..  ....+++|++|++++|.++ .++..+..+++|++|++++|
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred             EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC
Confidence            66666666554444444322233366666666665442  2334788999999999998 45555888899999999999


Q ss_pred             cccccCCcCCCCCCCCCEEeCCCCccc-ccCCccCcCCCCCCeeeCC-CCcCcccCCCCC
Q 040451          509 SFTRSIPSTLSSLKSITELDLSRNNLS-GHIPQYLENLSFLSFLNLS-YNHFEGKVPIEC  566 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~-~~~l~~~~p~~~  566 (566)
                      .++ .+|..+..+++|+.|++++|++. ...+..+..+++|+.|+++ .+.+.+..|.+|
T Consensus       225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence            998 46778888999999999999988 6677888888899999988 444555556555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.9e-25  Score=212.17  Aligned_cols=269  Identities=22%  Similarity=0.194  Sum_probs=198.4

Q ss_pred             CEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCC
Q 040451          277 SRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN  356 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~  356 (566)
                      +.++.+++.+...+.         .-.+++++|+++++.+++..+..+..+ +++++|++++|.+.+..+..+..+++|+
T Consensus        14 ~~~~c~~~~l~~ip~---------~~~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV---------GIPAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCSSCCT---------TCCTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             eEEEcCcCCcccCCc---------CCCCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCC
Confidence            567777777765543         124688888888888887666666554 5888888888888877777888888888


Q ss_pred             EEecCCcc-ccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451          357 ALGVESNQ-LAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN  435 (566)
Q Consensus       357 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      .|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence            88888886 76666777888888888888888888666777888888888888888888666666888888888888888


Q ss_pred             cccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCC
Q 040451          436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP  515 (566)
Q Consensus       436 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  515 (566)
                      .+++..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...-+
T Consensus       164 ~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          164 RISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccCHHHhcCcccc-CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            8874333344444444 888888888887778888888888888888888886555668888888888888888774221


Q ss_pred             cCCCCCCCCCEEeCCCCcccccCCccCcC--CCCCCeeeCCCCc
Q 040451          516 STLSSLKSITELDLSRNNLSGHIPQYLEN--LSFLSFLNLSYNH  557 (566)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~L~l~~~~  557 (566)
                      . ......++.+..+.+.+....|+.+.+  +..++..+++||+
T Consensus       243 ~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          243 A-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             G-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             c-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            1 011123455556677777677776643  5667777777774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.5e-25  Score=227.13  Aligned_cols=220  Identities=21%  Similarity=0.279  Sum_probs=143.7

Q ss_pred             CCCCCCCCCCCCCCCCCcccCc--------cCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccc
Q 040451            7 DPLGVTSSWNNSINLCQWTGVT--------CGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEV   78 (566)
Q Consensus         7 ~~~~~~~~w~~~~~~c~w~~~~--------~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~   78 (566)
                      |+-.....|....++|.|.|..        |..  .+++.|++++++++ .+|..+.  ++|++|+|++|.++ .+|.  
T Consensus         7 ~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--   78 (622)
T 3g06_A            7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--   78 (622)
T ss_dssp             ---CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred             HHHHHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence            5556667788889999996543        321  45888999999988 5666555  78999999999888 6775  


Q ss_pred             cCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451           79 SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        79 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  158 (566)
                       .+++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|..   +++|++
T Consensus        79 -~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~  145 (622)
T 3g06_A           79 -LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQE  145 (622)
T ss_dssp             -CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred             -cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence             5688999999998887 3444   6788888888888887 3444   5677888888888887 45553   477888


Q ss_pred             EEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451          159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       159 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      |++++|.+++ +|.   .+++|+.|++++|.+..++   ..+++|+.|++++|.+. .+|.    ..++|+.|++++|.+
T Consensus       146 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l  213 (622)
T 3g06_A          146 LSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRL  213 (622)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred             EECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcc
Confidence            8888887763 333   2356667777777666544   33455666666665554 2332    234555555555555


Q ss_pred             ccccccccccCCCCceEeccccccc
Q 040451          239 TGSLQDSLSNATNLQGLEINGNLFS  263 (566)
Q Consensus       239 ~~~~~~~l~~l~~L~~L~l~~~~~~  263 (566)
                      +.. +.   .+++|+.|++++|.++
T Consensus       214 ~~l-~~---~~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          214 TSL-PA---LPSGLKELIVSGNRLT  234 (622)
T ss_dssp             SSC-CC---CCTTCCEEECCSSCCS
T ss_pred             ccc-CC---CCCCCCEEEccCCccC
Confidence            422 21   1244555555554444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.3e-26  Score=221.19  Aligned_cols=246  Identities=20%  Similarity=0.187  Sum_probs=182.8

Q ss_pred             CCCCCEEEcccCccccccchhHhhccccccEEEccccCcc-Cccchhhh-------ccCCCCEEecCCccccccchhhc-
Q 040451          303 CTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQIS-GTIPDVIA-------NLVNLNALGVESNQLAGTIPLAI-  373 (566)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~-  373 (566)
                      .++|+++++++|.+  ..|..+..   .++.+++++|.+. ..++..+.       .+++|++|++++|.+++..+..+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34556666666655  33443333   2566666666653 23444433       67888888888888887777665 


Q ss_pred             -cCCCCCCEEEccCCcccccCCccccCC-----CCCCeEecccCcceecCCccccCCCCCcEEEccCCccccc--Cchhh
Q 040451          374 -GELKSLQMLFLNENFLRGTIPSSLGNL-----TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT--VPRQL  445 (566)
Q Consensus       374 -~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~  445 (566)
                       ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7788888888888888855 6666665     8888888888888877777888888888888888887644  22233


Q ss_pred             --hccCCcCcEEEccCCcceec---CCccccCCCCCCEEEccCCcccccCC-cCCcCCCCCcEEeCCCCcccccCCcCCC
Q 040451          446 --LHIITLPVLLDLSDNLLNGH---FPAEVGNLKNLVSLDISSNMFSGEIP-TTLGGCTSLEYLGMQDNSFTRSIPSTLS  519 (566)
Q Consensus       446 --~~~~~~l~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~  519 (566)
                        ..+. .++.|++++|.+.+.   ....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus       196 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          196 CPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence              3343 448888888888732   22335678999999999999986664 55677899999999999999 6777776


Q ss_pred             CCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451          520 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       520 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~  560 (566)
                        ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence              8999999999999965 66 8899999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.8e-24  Score=202.09  Aligned_cols=216  Identities=17%  Similarity=0.226  Sum_probs=161.7

Q ss_pred             CCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCC
Q 040451           19 INLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKI   98 (566)
Q Consensus        19 ~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   98 (566)
                      .++|.|.|+.|.-. .+++.++++++.++. +|..+.  +++++|+|++|.+....+..+.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            57899999999644 567789999999884 555444  67999999999988555567889999999999999888555


Q ss_pred             CcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccC
Q 040451           99 LTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR  178 (566)
Q Consensus        99 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~  178 (566)
                      +..+..+++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|++|++++|.+....+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            56678889999999999988865556678888899999998888866666778888888888888888765555677788


Q ss_pred             ccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451          179 NLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       179 ~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      +|+.|++++|.+...+ ..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            8888888888777655 33555666666666666665 344333335555556665555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=215.10  Aligned_cols=245  Identities=16%  Similarity=0.176  Sum_probs=148.6

Q ss_pred             cCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEE
Q 040451          127 GNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYI  206 (566)
Q Consensus       127 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  206 (566)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..    ..++|++|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L  104 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL  104 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence            344455555555555554334445555555555555555543222  445555555555555544332    12556666


Q ss_pred             EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccc-cCCCCCCEEECCCCc
Q 040451          207 FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINF-SRLQNLSRLNLGENN  285 (566)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  285 (566)
                      ++++|.+.+. +..   .+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus       105 ~l~~n~l~~~-~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          105 HAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             ECCSSCCSEE-EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECCCCccCCc-Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            6666655522 211   35667777777777776666667777777777777777765555544 356777777777776


Q ss_pred             CCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccc
Q 040451          286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQL  365 (566)
Q Consensus       286 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  365 (566)
                      +.....        ...+++|++|++++|.++                          .++..+..+++|+.|++++|.+
T Consensus       181 l~~~~~--------~~~l~~L~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          181 IYDVKG--------QVVFAKLKTLDLSSNKLA--------------------------FMGPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             CCEEEC--------CCCCTTCCEEECCSSCCC--------------------------EECGGGGGGTTCSEEECTTSCC
T ss_pred             Cccccc--------ccccccCCEEECCCCcCC--------------------------cchhhhcccCcccEEECcCCcc
Confidence            654422        123556666666666554                          2233466777888888888887


Q ss_pred             cccchhhccCCCCCCEEEccCCccc-ccCCccccCCCCCCeEecccCc-ceec
Q 040451          366 AGTIPLAIGELKSLQMLFLNENFLR-GTIPSSLGNLTLLTQLILEVNN-LQGK  416 (566)
Q Consensus       366 ~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-l~~~  416 (566)
                      + .++..+..+++|++|++++|++. +..+..+..+++|+.+++.+++ +.+.
T Consensus       227 ~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             C-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             c-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            7 35666777888888888888877 5667777788888888887543 4433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=7.7e-23  Score=212.45  Aligned_cols=267  Identities=22%  Similarity=0.255  Sum_probs=145.3

Q ss_pred             CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEe
Q 040451           82 FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV  161 (566)
Q Consensus        82 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l  161 (566)
                      .++++|+++++.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            35777888888777 5555443  67777777777776 4454   4567777777777776 4554   5567777777


Q ss_pred             eCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccc
Q 040451          162 RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGS  241 (566)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  241 (566)
                      ++|.++. +|.   .+++|+.|++++|.+..++..                            +++|++|++++|.++..
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~----------------------------l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL----------------------------PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC----------------------------CTTCCEEECCSSCCSCC
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC----------------------------CCCCCEEECcCCcCCCc
Confidence            7776653 333   345566666665555443321                            23444444444444321


Q ss_pred             cccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc
Q 040451          242 LQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       242 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                       +.   .+++|+.|++++|.++. .+   ..+++|+.|++++|.+...+.          ..++|+.|++++|.++.   
T Consensus       157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~~---  215 (622)
T 3g06_A          157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLTS---  215 (622)
T ss_dssp             -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS---
T ss_pred             -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCcccc---
Confidence             11   12344444554444442 11   223445555555554433221          12445555555554431   


Q ss_pred             hhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCC
Q 040451          322 FSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLT  401 (566)
Q Consensus       322 ~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  401 (566)
                                             +|.   .+++|+.|++++|.+++ ++   ..+++|++|++++|.++ .+|.   .++
T Consensus       216 -----------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~  261 (622)
T 3g06_A          216 -----------------------LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS  261 (622)
T ss_dssp             -----------------------CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             -----------------------cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence                                   111   12455666666665553 22   34456666666666665 3343   456


Q ss_pred             CCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhc
Q 040451          402 LLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLH  447 (566)
Q Consensus       402 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  447 (566)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|.+.+..+..+..
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            6666666666666 55666666666666666666666555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.3e-24  Score=219.62  Aligned_cols=235  Identities=17%  Similarity=0.186  Sum_probs=163.4

Q ss_pred             CCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEc
Q 040451          305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL  384 (566)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  384 (566)
                      +|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+  +..+++|+.|++++|.+++..     ..++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            34444444444433333333322 244444444444443333  667778888888888777432     2378888888


Q ss_pred             cCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCccee
Q 040451          385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNG  464 (566)
Q Consensus       385 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                      ++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+....+.++.|++++|.+.+
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88887754432   457788888888888877777788888888888888888866666666333444888888888876


Q ss_pred             cCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc-ccCCccCc
Q 040451          465 HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS-GHIPQYLE  543 (566)
Q Consensus       465 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~  543 (566)
                      ..+  ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. ..+|..+.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            532  3458889999999999885 44458888899999999998884 6777888889999999999887 55566777


Q ss_pred             CCCCCCeeeCC
Q 040451          544 NLSFLSFLNLS  554 (566)
Q Consensus       544 ~~~~L~~L~l~  554 (566)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            77888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.6e-23  Score=195.45  Aligned_cols=205  Identities=20%  Similarity=0.218  Sum_probs=120.7

Q ss_pred             ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451          329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  408 (566)
                      ..+++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46677777777766655556666777777777777666555556666777777777777766555566666777777777


Q ss_pred             ccCcceecCCccccCCCCCcEEEccCCccccc-CchhhhccCCcCcEEEccCCcceecCCccccCCCCCC----EEEccC
Q 040451          409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT-VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLV----SLDISS  483 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~  483 (566)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+..+ +.|++++|.+.+..+..+..+++|+    +|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            77776655555566667777777777666532 34444444333 5555555555544444444444444    555555


Q ss_pred             CcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       484 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |.+....+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            555533333332 235555555555555444444455555555555555555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.3e-23  Score=211.10  Aligned_cols=217  Identities=21%  Similarity=0.159  Sum_probs=188.6

Q ss_pred             cccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 040451          328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       328 ~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  407 (566)
                      +++++.|++++|.+.+..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. +    ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence            3589999999999999888899999999999999999987655  88999999999999998843 2    338999999


Q ss_pred             cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCcccc-CCCCCCEEEccCCcc
Q 040451          408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVG-NLKNLVSLDISSNMF  486 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~  486 (566)
                      +++|.+++..+.   .+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            999999865543   46889999999999997667677666666 9999999999988787776 799999999999999


Q ss_pred             cccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          487 SGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       487 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      ++..+  +..+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            85532  44689999999999999964 445889999999999999999 46778889999999999999987

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.9e-22  Score=190.56  Aligned_cols=205  Identities=17%  Similarity=0.164  Sum_probs=128.5

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l  137 (566)
                      ++|++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666444445666666666666666666544555666666666666666666555556666666666666


Q ss_pred             ccCcCCCCCchhhcCCCCCCEEEeeCCccccc-CcccccccCccceeeccccccccch-hhhhCCCCCc----EEEcccC
Q 040451          138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGR-IPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQ----YIFIHTN  211 (566)
Q Consensus       138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~----~L~l~~~  211 (566)
                      ++|.+++..+..+..+++|++|++++|.+... +|..+.++++|+.|++++|.+.+.. ..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            66666644444566666666666666666542 3566666666666666666665544 3333333333    6777777


Q ss_pred             cCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccc
Q 040451          212 RFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSG  264 (566)
Q Consensus       212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  264 (566)
                      .+. .++...+ ...+|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus       188 ~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            776 3443433 34478888888887776655566777888888888877653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.8e-22  Score=187.53  Aligned_cols=202  Identities=24%  Similarity=0.293  Sum_probs=135.3

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      ..+.++++++.++. +|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46677777777763 444332  567888888888776666677778888888888888775555556777888888888


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            888776666667777888888888877764333333333333 6666666666655444566666666666666666654


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      .+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            4455666666666666666666544455666666666666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.5e-22  Score=190.44  Aligned_cols=204  Identities=24%  Similarity=0.219  Sum_probs=146.8

Q ss_pred             hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451          349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI  428 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      ...+++|+.|++.++.+...  ..+..+++|++|++++|.+++  ...+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            44566777777777766532  245667777777777777663  23566677777777777777755555667777777


Q ss_pred             EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451          429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  508 (566)
                      +|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            77777777763333333444443 77777777777666666788888888888888888666666788888888888888


Q ss_pred             cccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCCC
Q 040451          509 SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI  564 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~  564 (566)
                      ++++..+..+..+++|+.|++++|++.+       .+++|+.+++++|.++|.+|.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence            8887777778888888888888888763       355788888888888888875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.6e-22  Score=187.85  Aligned_cols=200  Identities=26%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEE
Q 040451          351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILL  430 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  430 (566)
                      .++++++++++++.++. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            34444444444444442 22222  13444555555544444444444455555555555544432211  344455555


Q ss_pred             EccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcc
Q 040451          431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF  510 (566)
Q Consensus       431 ~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  510 (566)
                      ++++|.+. .+|..+..+..+ +.|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            55555444 344333333333 5555555555544445566666666666666666644445556666666666666666


Q ss_pred             cccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcC
Q 040451          511 TRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF  558 (566)
Q Consensus       511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  558 (566)
                      +...+..|..+++|+.|++++|+++ .+|..+...++|+.|+|++|++
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            6444444555666666666666666 4455555555666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.6e-24  Score=209.77  Aligned_cols=237  Identities=16%  Similarity=0.201  Sum_probs=158.3

Q ss_pred             CCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCC--CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccC
Q 040451           17 NSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNL--SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYF   94 (566)
Q Consensus        17 ~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   94 (566)
                      .+..|.+|.++.+..  ..+++++++++.+.   +..+.++  +++++|+++++.+.+..+. +..+++|++|++++|.+
T Consensus        32 ~~~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           32 VSGVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             TTSSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred             HHHHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence            355677999888752  45788999988776   4456666  8899999999888855554 56788899999998887


Q ss_pred             CCC-CCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC-cCCCC-CchhhcCCCCCCEEEeeCC-ccccc-
Q 040451           95 SGK-ILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN-HLKGQ-LPASIGNLSALQEIDVRGN-RLGGR-  169 (566)
Q Consensus        95 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-  169 (566)
                      +.. .+..+..+++|++|++++|.+++..+..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. 
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            644 5666788888888888888887677777888888888888888 56642 5556777888888888888 76643 


Q ss_pred             CcccccccC-ccceeeccccc--cc--cchhhhhCCCCCcEEEcccCc-CcccCCccccCCCCCccEEEccCCc-ccccc
Q 040451          170 IPSTISHVR-NLISFNVARNQ--FS--GMIPLIYNISSLQYIFIHTNR-FHGSLPLDNGVNLPNLRYFSISGNN-LTGSL  242 (566)
Q Consensus       170 ~~~~l~~l~-~L~~L~l~~~~--~~--~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~  242 (566)
                      ++..+..++ +|+.|++++|.  +.  ..+..+..+++|++|++++|. +++..+..+. .+++|++|++++|. +....
T Consensus       186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGG
T ss_pred             HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHH
Confidence            455566777 78888887774  32  122444556666666666665 3333333332 44555555555552 22222


Q ss_pred             ccccccCCCCceEecccc
Q 040451          243 QDSLSNATNLQGLEINGN  260 (566)
Q Consensus       243 ~~~l~~l~~L~~L~l~~~  260 (566)
                      ...+..+++|+.|++++|
T Consensus       265 ~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          265 LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTTCCEEECTTS
T ss_pred             HHHHhcCCCCCEEeccCc
Confidence            223444445555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2e-21  Score=184.07  Aligned_cols=179  Identities=21%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ  133 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  133 (566)
                      +.+++++++++++++.++ .+|..+.  +++++|++++|.++...+..+..+++|++|++++|.+++ ++. .+.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCC
Confidence            456666666666666666 5554442  466666666666665555566666666666666666653 222 25666666


Q ss_pred             EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCc
Q 040451          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNR  212 (566)
Q Consensus       134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~  212 (566)
                      +|++++|+++ .+|..+..+++|++|++++|+++...+..|.++++|+.|++++|.+...+ ..+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            6666666666 55666666666666666666666444455666666666666666555444 223344444444444444


Q ss_pred             CcccCCccccCCCCCccEEEccCCccc
Q 040451          213 FHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      +. .++...+..+++|++|++++|.++
T Consensus       160 l~-~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          160 LT-ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence            44 333333333444444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.3e-21  Score=181.67  Aligned_cols=189  Identities=19%  Similarity=0.224  Sum_probs=150.4

Q ss_pred             CCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCC
Q 040451           20 NLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKIL   99 (566)
Q Consensus        20 ~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   99 (566)
                      .|+.|.|.+|.   ...++++++++.+. .+|..+.  +++++|+|++|.+.+..+..+.++++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            57899999995   34567899999887 4555454  689999999999987777778999999999999999987777


Q ss_pred             cccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCc
Q 040451          100 TDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN  179 (566)
Q Consensus       100 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  179 (566)
                      ..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            77889999999999999988666667888899999999999888555556788889999999999888666667888888


Q ss_pred             cceeeccccccccch-hhhhCCCCCcEEEcccCcCc
Q 040451          180 LISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       180 L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |+.|++++|.+...+ ..+..+++|++|++++|++.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            888888888877665 34556666666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=5.8e-22  Score=190.33  Aligned_cols=227  Identities=20%  Similarity=0.198  Sum_probs=133.4

Q ss_pred             CCCCEEEcccCccccccchhHhh--ccccccEEEccccCccCccchhh--hccCCCCEEecCCccccccch----hhccC
Q 040451          304 TKLEVLDLHSNRFGGVLPFSLAN--LSITMTEIANGSNQISGTIPDVI--ANLVNLNALGVESNQLAGTIP----LAIGE  375 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~  375 (566)
                      ..++.+.+.++.+.......+..  ....+++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            35677777776655322211111  01235555555555554444444  455555555555555543211    22234


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceec--C--CccccCCCCCcEEEccCCcccccCchhhhccCCc
Q 040451          376 LKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK--I--PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITL  451 (566)
Q Consensus       376 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  451 (566)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|                     
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L---------------------  202 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL---------------------  202 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC---------------------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE---------------------
Confidence            45555555555555444444455555555555555544321  1  1112344444444                     


Q ss_pred             CcEEEccCCcceecCC--c-cccCCCCCCEEEccCCcccccCCcCCcCC---CCCcEEeCCCCcccccCCcCCCCCCCCC
Q 040451          452 PVLLDLSDNLLNGHFP--A-EVGNLKNLVSLDISSNMFSGEIPTTLGGC---TSLEYLGMQDNSFTRSIPSTLSSLKSIT  525 (566)
Q Consensus       452 l~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~  525 (566)
                          ++++|.+.....  . .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+
T Consensus       203 ----~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~  275 (310)
T 4glp_A          203 ----ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR  275 (310)
T ss_dssp             ----BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred             ----ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence                555554431111  1 24677889999999999986667666666   69999999999998 5676664  7999


Q ss_pred             EEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcc
Q 040451          526 ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG  560 (566)
Q Consensus       526 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~  560 (566)
                      .|++++|++++. |. +..+++|+.|++++|++++
T Consensus       276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            999999999854 33 5778899999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.7e-22  Score=196.82  Aligned_cols=230  Identities=16%  Similarity=0.164  Sum_probs=135.0

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCcccccc-chhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT-IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  408 (566)
                      .++.+++.++.+.+..+. +..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            444444444444443333 33556666666666666543 4555566666666666666666555556666666666666


Q ss_pred             ccC-cceec-CCccccCCCCCcEEEccCC-ccccc-CchhhhccCCcCcEEEccCC--cce-ecCCccccCCCCCCEEEc
Q 040451          409 EVN-NLQGK-IPPSIGNCQNLILLTTRKN-KLSGT-VPRQLLHIITLPVLLDLSDN--LLN-GHFPAEVGNLKNLVSLDI  481 (566)
Q Consensus       409 ~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~~l~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l  481 (566)
                      ++| .+++. ++..+..+++|++|++++| .+++. ++..+..++..++.|++++|  .+. ...+..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            666 45432 3444556666666666666 55543 34444444413366677666  333 233444566777777777


Q ss_pred             cCCc-ccccCCcCCcCCCCCcEEeCCCCc-ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCC-CCCCeeeCCCCcC
Q 040451          482 SSNM-FSGEIPTTLGGCTSLEYLGMQDNS-FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLSFLNLSYNHF  558 (566)
Q Consensus       482 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~~~l  558 (566)
                      ++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +.   .+.+..+ .+++.|++++|.+
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccC
Confidence            7777 555555667777777777777773 33332234666777777777777 33   1223333 3466677777777


Q ss_pred             cccCCC
Q 040451          559 EGKVPI  564 (566)
Q Consensus       559 ~~~~p~  564 (566)
                      ++..|.
T Consensus       306 ~~~~~~  311 (336)
T 2ast_B          306 TTIARP  311 (336)
T ss_dssp             CCTTCS
T ss_pred             ccccCC
Confidence            776663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=4.6e-23  Score=202.54  Aligned_cols=252  Identities=19%  Similarity=0.182  Sum_probs=138.2

Q ss_pred             EECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc----hhHhhccccccEEEccccCccCccchhhhcc--
Q 040451          279 LNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSITMTEIANGSNQISGTIPDVIANL--  352 (566)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l--  352 (566)
                      +.++.+.+.+..+      ..+...++|++|++++|.+++..+    ..+...+.++++|++++|.+.+..+..+..+  
T Consensus         3 ~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            3 YKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             cccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            4566666554322      344455568888888888876665    3444443367777777777766555555553  


Q ss_pred             ---CCCCEEecCCccccccchhh----ccCC-CCCCEEEccCCcccccCCccc----cC-CCCCCeEecccCcceecCC-
Q 040451          353 ---VNLNALGVESNQLAGTIPLA----IGEL-KSLQMLFLNENFLRGTIPSSL----GN-LTLLTQLILEVNNLQGKIP-  418 (566)
Q Consensus       353 ---~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~l~~~~~-  418 (566)
                         ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.++.... 
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence               66777777777766554442    3333 667777777777664443332    22 2467777777776653222 


Q ss_pred             ---ccccCCC-CCcEEEccCCcccccCchhhhc----cCCcCcEEEccCCcceec----CCccccC-CCCCCEEEccCCc
Q 040451          419 ---PSIGNCQ-NLILLTTRKNKLSGTVPRQLLH----IITLPVLLDLSDNLLNGH----FPAEVGN-LKNLVSLDISSNM  485 (566)
Q Consensus       419 ---~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~----~~~~l~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~  485 (566)
                         ..+..++ +|++|++++|.+++..+..+..    .+..++.|++++|.+.+.    ++..+.. .++|++|++++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence               2233443 6677777777666444433322    222336666666665542    1222332 3456666666666


Q ss_pred             ccccCC----cCCcCCCCCcEEeCCCCcccc-------cCCcCCCCCCCCCEEeCCCCcccc
Q 040451          486 FSGEIP----TTLGGCTSLEYLGMQDNSFTR-------SIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       486 ~~~~~~----~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      +.+..+    ..+..+++|++|++++|.+.+       ..+..+..+++|+.||+++|++..
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            653322    234555566666666665322       122344555566666666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.7e-23  Score=205.36  Aligned_cols=254  Identities=18%  Similarity=0.246  Sum_probs=130.5

Q ss_pred             ccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccc---cccchhHhhccccccEEEccccCccCc
Q 040451          268 INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFG---GVLPFSLANLSITMTEIANGSNQISGT  344 (566)
Q Consensus       268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~  344 (566)
                      ..+..+++|+.|++++|.+....+.  .+...+..+++|++|++++|.+.   +..|..+..                  
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------   85 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAAR--WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------   85 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHH--HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHH--HHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------
Confidence            3345556666666666655433221  11123455666666666664322   222222211                  


Q ss_pred             cchhhhccCCCCEEecCCccccc----cchhhccCCCCCCEEEccCCcccccCCccc----cCC---------CCCCeEe
Q 040451          345 IPDVIANLVNLNALGVESNQLAG----TIPLAIGELKSLQMLFLNENFLRGTIPSSL----GNL---------TLLTQLI  407 (566)
Q Consensus       345 ~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l---------~~L~~L~  407 (566)
                      +...+..+++|+.|++++|.+..    .++..+..+++|++|++++|.+++..+..+    ..+         ++|++|+
T Consensus        86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            11334566777777777776665    244556666777777777776653322222    222         6666666


Q ss_pred             cccCcce-ecCC---ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccC
Q 040451          408 LEVNNLQ-GKIP---PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS  483 (566)
Q Consensus       408 l~~~~l~-~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  483 (566)
                      +++|+++ ...+   ..+..+++|++|++++|.+.+.....                    ..+..+..+++|+.|++++
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~--------------------l~~~~l~~~~~L~~L~Ls~  225 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--------------------LLLEGLAYCQELKVLDLQD  225 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HHHTTGGGCTTCCEEECCS
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH--------------------HHHHHhhcCCCccEEECcC
Confidence            6666664 2222   24445566666666666554211000                    1111345555666666666


Q ss_pred             Cccc----ccCCcCCcCCCCCcEEeCCCCccccc----CCcCC--CCCCCCCEEeCCCCcccc----cCCccC-cCCCCC
Q 040451          484 NMFS----GEIPTTLGGCTSLEYLGMQDNSFTRS----IPSTL--SSLKSITELDLSRNNLSG----HIPQYL-ENLSFL  548 (566)
Q Consensus       484 ~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~n~~~~----~~~~~l-~~~~~L  548 (566)
                      |.++    ..++..+..+++|++|+|++|.+++.    ++..+  ..+++|+.|++++|.++.    .+|..+ .++++|
T Consensus       226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L  305 (386)
T 2ca6_A          226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  305 (386)
T ss_dssp             SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence            6553    23444555556666666666655543    23333  225566666666666654    244444 345566


Q ss_pred             CeeeCCCCcCccc
Q 040451          549 SFLNLSYNHFEGK  561 (566)
Q Consensus       549 ~~L~l~~~~l~~~  561 (566)
                      +.|++++|++++.
T Consensus       306 ~~L~l~~N~l~~~  318 (386)
T 2ca6_A          306 LFLELNGNRFSEE  318 (386)
T ss_dssp             CEEECTTSBSCTT
T ss_pred             eEEEccCCcCCcc
Confidence            6666666665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.1e-22  Score=199.92  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC----ccccCCC-CCCEEeCCCccCCCCCCcccccC-----CCC
Q 040451           39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP----HEVSNLF-RLQNLTLTNNYFSGKILTDLSHC-----SNV  108 (566)
Q Consensus        39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L  108 (566)
                      ++++.+++.+.+|..+...++|++|+|++|.+.+..+    ..+..++ +|++|++++|.++...+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666666655555567777777776664433    4455666 66777777666665444444443     666


Q ss_pred             CEEEccCCcccccCCccc----cCC-CCCCEEecccCcCCCCCchhhc----C-CCCCCEEEeeCCcccccCcc----cc
Q 040451          109 MKFEASNNKLEAEIPVEI----GNL-LMLQILNIAENHLKGQLPASIG----N-LSALQEIDVRGNRLGGRIPS----TI  174 (566)
Q Consensus       109 ~~L~L~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~i~~~~~~~l~----~-l~~L~~L~l~~~~~~~~~~~----~l  174 (566)
                      ++|++++|.+++..+..+    ..+ ++|++|++++|.++...+..+.    . .++|++|++++|.+.+..+.    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666654433322    233 5566666666666543333322    2 24566666666655532222    22


Q ss_pred             cccC-ccceeecccccccc
Q 040451          175 SHVR-NLISFNVARNQFSG  192 (566)
Q Consensus       175 ~~l~-~L~~L~l~~~~~~~  192 (566)
                      ..++ +|+.|++++|.+.+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGG
T ss_pred             hcCCccccEeeecCCCCch
Confidence            2232 55555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.2e-20  Score=177.45  Aligned_cols=203  Identities=19%  Similarity=0.243  Sum_probs=172.3

Q ss_pred             CCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEcc
Q 040451          354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR  433 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  433 (566)
                      .+..+++.++.+.+.  .....+++|++|++++|.++ .. ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            444566666665543  23456889999999999987 33 3578899999999999999853  478899999999999


Q ss_pred             CCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccccc
Q 040451          434 KNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRS  513 (566)
Q Consensus       434 ~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  513 (566)
                      +|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            999985444445555554 9999999999987777789999999999999999977777789999999999999999987


Q ss_pred             CCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCC
Q 040451          514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p  563 (566)
                      .+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            77778999999999999999998888888999999999999999998876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4.2e-21  Score=177.02  Aligned_cols=197  Identities=19%  Similarity=0.225  Sum_probs=142.7

Q ss_pred             CCCEEecCCccccccchhhccCCCCCCEEEccCCc-ccccCCccccCCCCCCeEeccc-CcceecCCccccCCCCCcEEE
Q 040451          354 NLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF-LRGTIPSSLGNLTLLTQLILEV-NNLQGKIPPSIGNCQNLILLT  431 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      +++.|++++|.+++..+..+..+++|++|++++|. +++..+..+..+++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56667777666665555566666777777777775 6544445666677777777776 666655556666677777777


Q ss_pred             ccCCcccccCchhhhccCCcCc---EEEccCC-cceecCCccccCCCCCC-EEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451          432 TRKNKLSGTVPRQLLHIITLPV---LLDLSDN-LLNGHFPAEVGNLKNLV-SLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       432 l~~~~l~~~~~~~~~~~~~~l~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  506 (566)
                      +++|.+.+ +|. +..+..+ +   .|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|++|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            77776663 444 3333333 4   7788888 77766667789999999 9999999998444445555 899999999


Q ss_pred             CCc-ccccCCcCCCCC-CCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451          507 DNS-FTRSIPSTLSSL-KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       507 ~~~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      +|+ ++...+..|..+ ++|+.|++++|+++.. |..  .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            995 987777889999 9999999999999854 433  56899999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.7e-21  Score=184.74  Aligned_cols=224  Identities=14%  Similarity=0.127  Sum_probs=146.5

Q ss_pred             CCCcEEEcCCCCCccc-cCc--cccCCCCCCEEeCCCccCCCCCCccc--ccCCCCCEEEccCCcccccCC----ccccC
Q 040451           58 SFPRSINLPNKSFRGE-IPH--EVSNLFRLQNLTLTNNYFSGKILTDL--SHCSNVMKFEASNNKLEAEIP----VEIGN  128 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~----~~~~~  128 (566)
                      ..++.+.+.++.+... +..  .+..+++|++|++++|.+++..+..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3567777777776532 111  12234568888888888877777776  788888888888888775433    33456


Q ss_pred             CCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccccc--C--cccccccCccceeeccccccccchh----hhhCC
Q 040451          129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR--I--PSTISHVRNLISFNVARNQFSGMIP----LIYNI  200 (566)
Q Consensus       129 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~  200 (566)
                      +++|++|++++|++++..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.+.....    .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            77888888888888766667778888888888888876531  1  2223577888888888888765442    24567


Q ss_pred             CCCcEEEcccCcCcccCCccccCCC---CCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCC
Q 040451          201 SSLQYIFIHTNRFHGSLPLDNGVNL---PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLS  277 (566)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  277 (566)
                      ++|++|++++|.+.+..|..+. .+   ++|++|++++|.++ ..|..+.  ++|+.|++++|.+++. +. +..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7888888888877755554444 22   57777777777766 3344332  5666666666666532 22 45556666


Q ss_pred             EEECCCCcCC
Q 040451          278 RLNLGENNLG  287 (566)
Q Consensus       278 ~L~l~~~~~~  287 (566)
                      .|++++|.+.
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            6666666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.8e-20  Score=173.95  Aligned_cols=180  Identities=19%  Similarity=0.182  Sum_probs=117.7

Q ss_pred             CCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEc
Q 040451          353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTT  432 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  432 (566)
                      ...+.++++++.++ .+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34567888888777 3444443  57888888888888777777888888888888888888777777888888888888


Q ss_pred             cCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccc
Q 040451          433 RKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTR  512 (566)
Q Consensus       433 ~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  512 (566)
                      ++|.+.+..+..+..+. .++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|++++
T Consensus        91 ~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            88887733323333333 33666666666665444445556666666666666654444456666666666666666665


Q ss_pred             cCCcCCCCCCCCCEEeCCCCcccc
Q 040451          513 SIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       513 ~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      ..+..+..+++|+.|++++|++..
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeC
Confidence            444555666666666666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.3e-20  Score=173.63  Aligned_cols=151  Identities=17%  Similarity=0.255  Sum_probs=105.2

Q ss_pred             CCcEEEcCCCCCccccCccccCCCCCCEEeCCCcc-CCCCCCcccccCCCCCEEEccC-CcccccCCccccCCCCCCEEe
Q 040451           59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNY-FSGKILTDLSHCSNVMKFEASN-NKLEAEIPVEIGNLLMLQILN  136 (566)
Q Consensus        59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~  136 (566)
                      +|++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78888888888885455567888888888888886 7655556778888888888887 777755556777888888888


Q ss_pred             cccCcCCCCCchhhcCCCCCC---EEEeeCC-cccccCcccccccCccc-eeeccccccccchhhhhCCCCCcEEEcccC
Q 040451          137 IAENHLKGQLPASIGNLSALQ---EIDVRGN-RLGGRIPSTISHVRNLI-SFNVARNQFSGMIPLIYNISSLQYIFIHTN  211 (566)
Q Consensus       137 l~~~~i~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  211 (566)
                      +++|+++ .+|. +..+++|+   +|++++| .+....+..+.++++|+ .|++++|.+...+......++|++|++++|
T Consensus       112 l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            8888877 3555 67777777   8888877 77655555566777777 777766666544432222244444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.2e-22  Score=199.83  Aligned_cols=193  Identities=21%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             cCCCCCCEEecccCcCCC----CCchhhcCCCCCCEEEeeCCcccccCcccc----ccc---------Cccceeeccccc
Q 040451          127 GNLLMLQILNIAENHLKG----QLPASIGNLSALQEIDVRGNRLGGRIPSTI----SHV---------RNLISFNVARNQ  189 (566)
Q Consensus       127 ~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l---------~~L~~L~l~~~~  189 (566)
                      .++++|++|++++|.++.    .++..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            445555555555555553    234444555555555555555542222222    222         555555555555


Q ss_pred             cccch-----hhhhCCCCCcEEEcccCcCccc----CCccccCCCCCccEEEccCCccc----cccccccccCCCCceEe
Q 040451          190 FSGMI-----PLIYNISSLQYIFIHTNRFHGS----LPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNATNLQGLE  256 (566)
Q Consensus       190 ~~~~~-----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~  256 (566)
                      +....     ..+..+++|++|++++|.+...    +.......+++|++|++++|.++    ...+..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            54211     2344555666666666655421    11111125666667777666664    33455566667777777


Q ss_pred             ccccccccc----cccccc--CCCCCCEEECCCCcCCCCCCCChhhhhhh-cCCCCCCEEEcccCccccccc
Q 040451          257 INGNLFSGK----VSINFS--RLQNLSRLNLGENNLGTGTANDLDFITLL-TNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       257 l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      +++|.+.+.    .+..+.  .+++|+.|++++|.+......  .+...+ ..+++|++|++++|.+++..+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--TLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            777766543    233332  267777777777776542110  111233 456778888888887776553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.1e-20  Score=178.89  Aligned_cols=194  Identities=20%  Similarity=0.306  Sum_probs=130.0

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ  133 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  133 (566)
                      ..++++|++|+++++.+. .++ .+..+++|++|++++|.++.. +. +..+++|++|++++|.+.+ + ..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            355677778888777776 455 467777788888887777643 33 7777777778777777763 3 3577777777


Q ss_pred             EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      +|++++|++++ ++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+... +..+++|++|++++|.+
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            77777777773 33 377777777777777777633 22 6677777777777777765544 66667777777777766


Q ss_pred             cccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc
Q 040451          214 HGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS  263 (566)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  263 (566)
                      .+ ++.  ...+++|++|++++|.+....  .+..+++|+.|++++|.++
T Consensus       186 ~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             Cc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            53 222  225666777777777666443  2566667777777766665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2e-20  Score=179.12  Aligned_cols=191  Identities=19%  Similarity=0.298  Sum_probs=125.6

Q ss_pred             ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 040451          329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  408 (566)
                      ..++.|+++++.+.. ++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence            467777777777664 23 46677777777777777765433  6777777777777777763 2 35677777777777


Q ss_pred             ccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccc
Q 040451          409 EVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  488 (566)
                      ++|.+++. + .+..+++|+.|++++|.+.+ ++. +..+..+ +.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            77777642 2 36777777777777777763 222 3344333 777777777664322  6667777777777777763


Q ss_pred             cCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451          489 EIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      . +. +..+++|++|++++|++++..  .+..+++|+.|++++|+++.
T Consensus       188 ~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 I-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             C-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             C-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            2 22 666677777777777776433  26667777777777777663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.1e-20  Score=193.73  Aligned_cols=211  Identities=18%  Similarity=0.280  Sum_probs=161.0

Q ss_pred             CCCCCCCCCCCCCCC-----CcccC-ccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCC
Q 040451            8 PLGVTSSWNNSINLC-----QWTGV-TCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNL   81 (566)
Q Consensus         8 ~~~~~~~w~~~~~~c-----~w~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l   81 (566)
                      +.+...+|..+...|     .|.++ .|..  .+++.|+++++++.+ +|..+  +++|++|+|++|.++ .+|   ..+
T Consensus        29 ~~~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l   99 (571)
T 3cvr_A           29 YFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELP   99 (571)
T ss_dssp             HHHHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCC
T ss_pred             HHHHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---ccc
Confidence            334566788777888     79988 6753  579999999999986 66655  388999999999998 788   457


Q ss_pred             CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEe
Q 040451           82 FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV  161 (566)
Q Consensus        82 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l  161 (566)
                      ++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  167 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV  167 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence            899999999999985 565 554  99999999999985 665   67899999999999984 665   5788999999


Q ss_pred             eCCcccccCcccccccCccceeeccccccccchhhhhCCCCC-------cEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451          162 RGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSL-------QYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS  234 (566)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  234 (566)
                      ++|.+++ +|. +.  ++|+.|++++|.+..++. +..  +|       +.|++++|.+. .+|..++ .+++|+.|+++
T Consensus       168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~  238 (571)
T 3cvr_A          168 RNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILE  238 (571)
T ss_dssp             CSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECC
T ss_pred             CCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEee
Confidence            9999885 666 55  888889998888876555 332  55       77777777776 5666665 46777777777


Q ss_pred             CCcccccccccccc
Q 040451          235 GNNLTGSLQDSLSN  248 (566)
Q Consensus       235 ~~~~~~~~~~~l~~  248 (566)
                      +|.++...|..+..
T Consensus       239 ~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          239 DNPLSSRIRESLSQ  252 (571)
T ss_dssp             SSSCCHHHHHHHHH
T ss_pred             CCcCCCcCHHHHHH
Confidence            77776655555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.4e-19  Score=160.40  Aligned_cols=181  Identities=17%  Similarity=0.198  Sum_probs=134.9

Q ss_pred             CCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCc
Q 040451           21 LCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILT  100 (566)
Q Consensus        21 ~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  100 (566)
                      .|.|.++.|..            +.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.++...+.
T Consensus         6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            46787777753            2332 233322  45889999999998855555678889999999999988865566


Q ss_pred             ccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCcc
Q 040451          101 DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL  180 (566)
Q Consensus       101 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  180 (566)
                      .+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            67888999999999998886555567888899999999988886555567888889999999888886555567788888


Q ss_pred             ceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCcccc
Q 040451          181 ISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNG  222 (566)
Q Consensus       181 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  222 (566)
                      +.|++++|.+.      +.++.|+.|+++.|.+.+.+|..++
T Consensus       151 ~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          151 QYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             CEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             cEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence            88888888654      3456677777777777766665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=9.9e-19  Score=170.68  Aligned_cols=237  Identities=15%  Similarity=0.089  Sum_probs=152.7

Q ss_pred             EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCCCC-cccccCCCCCE-EEccC
Q 040451           39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGKIL-TDLSHCSNVMK-FEASN  115 (566)
Q Consensus        39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~L~~  115 (566)
                      ++-++++++ .+|..+  .+++++|+|++|+++ .+| ++|.++++|++|+|++|.+...++ ..|.+++++++ +.+.+
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            334455555 355544  357899999999988 555 468889999999999998754443 45788888775 55566


Q ss_pred             CcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeC-CcccccCcccccccC-ccceeeccccccccc
Q 040451          116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVR-NLISFNVARNQFSGM  193 (566)
Q Consensus       116 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~  193 (566)
                      |++....|..|.++++|++|++++|+++...+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+..+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            788766677788888899999988888855555566667788888865 455544445555553 577788888877766


Q ss_pred             hhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCC
Q 040451          194 IPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      +...+...+|+++++.+++..+.+|...+..+++|++|++++|+++...+..+   ..|+.|.+.++......| .+..+
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l  245 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKL  245 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhC
Confidence            65555566777777765544446666655566777777777776664433333   334444443332222233 24455


Q ss_pred             CCCCEEECCC
Q 040451          274 QNLSRLNLGE  283 (566)
Q Consensus       274 ~~L~~L~l~~  283 (566)
                      ++|+.+++.+
T Consensus       246 ~~L~~l~l~~  255 (350)
T 4ay9_X          246 VALMEASLTY  255 (350)
T ss_dssp             CSCCEEECSC
T ss_pred             cChhhCcCCC
Confidence            5555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.2e-18  Score=157.17  Aligned_cols=165  Identities=18%  Similarity=0.207  Sum_probs=134.3

Q ss_pred             CCCCCCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCc
Q 040451           13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNN   92 (566)
Q Consensus        13 ~~w~~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~   92 (566)
                      --|..++..|.|.++.|..            +.+. .+|..+.  ++|++|+|++|.+.+..+..+..+++|++|++++|
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N   74 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN   74 (229)
T ss_dssp             -CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence            3466788999999988864            2232 3444333  88999999999999777888899999999999999


Q ss_pred             cCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcc
Q 040451           93 YFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS  172 (566)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  172 (566)
                      .++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+....+.
T Consensus        75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            998655566889999999999999998666666788999999999999998 7888889999999999999998866666


Q ss_pred             cccccCccceeeccccccccc
Q 040451          173 TISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       173 ~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      .+..+++|+.|++++|.+...
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTT
T ss_pred             HHhCCCCCCEEEeeCCCccCC
Confidence            788888899999888887643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.3e-18  Score=156.64  Aligned_cols=177  Identities=23%  Similarity=0.209  Sum_probs=95.1

Q ss_pred             CEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCC
Q 040451          356 NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN  435 (566)
Q Consensus       356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      +.++.+++.++.. |..  ..++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            4566666665532 322  2457888888888877555556677788888888888777555555677777777777777


Q ss_pred             cccccCchh-hhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC
Q 040451          436 KLSGTVPRQ-LLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI  514 (566)
Q Consensus       436 ~l~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  514 (566)
                      .+. .++.. +..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+  
T Consensus        87 ~l~-~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--  162 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQ-LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--  162 (208)
T ss_dssp             CCC-CCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred             cCC-ccCHhHhcCccC-CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence            766 22222 222222 2444444444443333334444444444444444443333334444444444444443331  


Q ss_pred             CcCCCCCCCCCEEeCCCCcccccCCccCcC
Q 040451          515 PSTLSSLKSITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       515 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                           .+++|+.|+++.|.+++.+|+.+..
T Consensus       163 -----~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          163 -----TCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             -----CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             -----CCCCHHHHHHHHHhCCceeeccCcc
Confidence                 2234444444444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=4.1e-18  Score=166.32  Aligned_cols=220  Identities=17%  Similarity=0.179  Sum_probs=123.1

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccch-hhccCCCCCCE-EEccCCcccccCCccccCCCCCCeEe
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSLQM-LFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~  407 (566)
                      ++++|++++|+++...+..|.++++|++|++++|.+.+.++ .+|.+++++.+ +.+++|+++...+..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            45555555555543333456666777777777766644333 35566666554 44445666655566666677777777


Q ss_pred             cccCcceecCCccccCCCCCcEEEccCC-cccccCch-hhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccC-C
Q 040451          408 LEVNNLQGKIPPSIGNCQNLILLTTRKN-KLSGTVPR-QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS-N  484 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~  484 (566)
                      +++|++....+..+.....+..+++.++ .+. .++. .+......++.|++++|.+....+..| ...+|++|++.+ |
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence            7777666544445555556666666553 333 3333 233344444667777777765444333 345667777764 4


Q ss_pred             cccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCC
Q 040451          485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  555 (566)
Q Consensus       485 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  555 (566)
                      .+....++.|.++++|++|++++|+++...+.++   .+|+.|.+.++.-.+.+|. +.++++|+.+++++
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            4543333456677777777777777764333333   4455555555443334442 55666777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=4.6e-18  Score=174.43  Aligned_cols=186  Identities=25%  Similarity=0.372  Sum_probs=106.2

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      +++.|++++|.+.+ +|..+  +++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666664 44433  256666666666666 333   345666666666666663 444 333  66666666


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|++++ +|.   .+++|+.|++++|.+++ +|.    ..+.++.|++++|.+.+ +|. +.  ++|+.|++++|.++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            666664 333   45666666666666652 443    22334666666666654 333 43  56666666666666 4


Q ss_pred             CCcCCcCCCCC-------cEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcC
Q 040451          490 IPTTLGGCTSL-------EYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       490 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            444 432  55       66666666666 35555555666666666666666555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=6e-18  Score=160.31  Aligned_cols=171  Identities=19%  Similarity=0.300  Sum_probs=86.8

Q ss_pred             cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451           55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  134 (566)
                      .++++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+.++++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            44555566666555554 333 25555555555555555553222  5555555555555555542 22 3555555555


Q ss_pred             EecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCc
Q 040451          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |++++|++++ + ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+ +.                
T Consensus       117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~----------------  175 (291)
T 1h6t_A          117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA----------------  175 (291)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT----------------
T ss_pred             EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hc----------------
Confidence            5555555552 2 3445555555555555555422  334445555555555554443332 33                


Q ss_pred             ccCCccccCCCCCccEEEccCCccccccccccccCCCCceEeccccccc
Q 040451          215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFS  263 (566)
Q Consensus       215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  263 (566)
                               .+++|++|++++|.++.. + .+..+++|+.|++++|.+.
T Consensus       176 ---------~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          176 ---------GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ---------TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ---------CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence                     445555555555555432 1 2455555566666555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.6e-17  Score=149.03  Aligned_cols=151  Identities=19%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             EEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCc
Q 040451          357 ALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK  436 (566)
Q Consensus       357 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  436 (566)
                      .++++++.++. +|..+.  +++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus        15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            44555554442 232221  455555555555554444445555555555555555554445555555555555554444


Q ss_pred             ccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCc
Q 040451          437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS  516 (566)
Q Consensus       437 l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  516 (566)
                      +.                         ...+..|..+++|++|++++|.+....+..|..+++|++|+|++|.+++..+.
T Consensus        92 l~-------------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           92 IT-------------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CC-------------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            43                         23333466777888888888888766677777788888888888888766666


Q ss_pred             CCCCCCCCCEEeCCCCccc
Q 040451          517 TLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       517 ~l~~l~~L~~L~l~~n~~~  535 (566)
                      .|..+++|+.|++++|++.
T Consensus       147 ~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEE
T ss_pred             HHhCCCCCCEEEeCCCCcC
Confidence            6777788888888888775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1e-17  Score=158.76  Aligned_cols=175  Identities=22%  Similarity=0.298  Sum_probs=113.0

Q ss_pred             cCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451           79 SNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        79 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  158 (566)
                      ..+++|++|++++|.++..  ..+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ + ..+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            4556666667666666532  2356666666666666666532 22 6666666666666666652 2 23556666666


Q ss_pred             EEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcc
Q 040451          159 IDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       159 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      |++++|.+.+.  ..+..++                       +|++|++++|.+.+ + .. ...+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~-----------------------~L~~L~l~~n~l~~-~-~~-l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLP-----------------------QLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCT-----------------------TCCEEECCSSCCCC-C-GG-GGGCTTCSEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCC-----------------------CCCEEEccCCcCCc-c-hh-hccCCCCCEEEccCCcc
Confidence            66666655421  2344444                       45555555554442 2 12 22678888888888888


Q ss_pred             ccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCC
Q 040451          239 TGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTA  291 (566)
Q Consensus       239 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (566)
                      .+..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+...+.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence            76544  88899999999999999854 3 48899999999999998866443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=150.13  Aligned_cols=152  Identities=19%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEecccCcceecCC-ccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEcc
Q 040451          380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLS  458 (566)
Q Consensus       380 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~  458 (566)
                      ++++++++.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+..+ +.|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECC
Confidence            58899999887 5665543  567899999999886644 457788888888888888763333333333333 555555


Q ss_pred             CCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          459 DNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       459 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555444444555555555555555555444555555555555555555555444555555555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=4.5e-17  Score=147.40  Aligned_cols=153  Identities=18%  Similarity=0.197  Sum_probs=122.4

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      .++.+++.+.. +|..+.  +++++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|++|.
T Consensus        15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666666653 454443  688999999999885555678888999999999998887778888899999999999998


Q ss_pred             ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccc
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++...+..|.++++|++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            8855445578888999999999988877778888888999999999988866666788888888888888887643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=9.5e-18  Score=149.29  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=101.3

Q ss_pred             cCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040451           55 GNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  134 (566)
                      +++++|++|++++|.+. .++ .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..++++++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56677777777777776 555 4677777777777777554  2346677777777777777776656667777777777


Q ss_pred             EecccCcCCCCCchhhcCCCCCCEEEeeCCc-ccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       135 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      |++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            7777777775566677777777777777776 44 333 4666677777777776666543 455555666666655554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.7e-17  Score=162.58  Aligned_cols=176  Identities=24%  Similarity=0.180  Sum_probs=115.3

Q ss_pred             CEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccCcceecCCccccCCCCCcEEEccC
Q 040451          356 NALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLG-NLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRK  434 (566)
Q Consensus       356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  434 (566)
                      +.++++++.++. +|..+  .+.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666653 34333  24567777777777655555555 667777777777777665556666666666666666


Q ss_pred             CcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccC
Q 040451          435 NKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI  514 (566)
Q Consensus       435 ~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  514 (566)
                      |++.                         ...+..|..+++|+.|++++|.+....+..|..+++|++|+|++|.++...
T Consensus        98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            6654                         333445667777777777777777666677777777888888777777543


Q ss_pred             CcCC---CCCCCCCEEeCCCCcccccCCccCcCCCC--CCeeeCCCCcCc
Q 040451          515 PSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LSFLNLSYNHFE  559 (566)
Q Consensus       515 ~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~~~l~  559 (566)
                      +..|   ..+++|+.|++++|+++...+..+..++.  |+.|+|++|++.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3344   45777888888888777555556666665  477788877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.4e-17  Score=171.10  Aligned_cols=175  Identities=26%  Similarity=0.367  Sum_probs=122.7

Q ss_pred             hhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCc
Q 040451          349 IANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLI  428 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ + ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence            45667777777777776643 2 46677777777777777764333  6677777777777777763 2 2567777777


Q ss_pred             EEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCC
Q 040451          429 LLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  508 (566)
                      .|++++|.+.+ + ..+..++.+ +.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|
T Consensus       113 ~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          113 SLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            77777777763 2 334444444 7777777777654  457788888888888888875444  778888888888888


Q ss_pred             cccccCCcCCCCCCCCCEEeCCCCcccccC
Q 040451          509 SFTRSIPSTLSSLKSITELDLSRNNLSGHI  538 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  538 (566)
                      ++++.  ..+..+++|+.|+|++|++....
T Consensus       186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          186 HISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            88753  35777888888888888877543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=7.2e-17  Score=146.05  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=126.2

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  116 (566)
                      +++++++.++. +|..+.  +.+++|+|++|.+++..+ ..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            68888888874 555443  456899999999885534 44788999999999999988766778889999999999999


Q ss_pred             cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch
Q 040451          117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI  194 (566)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (566)
                      .+++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+....
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            988766777888999999999999998777888888999999999999988777888888888888888888876543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.4e-17  Score=170.01  Aligned_cols=173  Identities=18%  Similarity=0.300  Sum_probs=111.3

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ  133 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  133 (566)
                      +.++++|++|++++|.+. .++ .+..+++|++|+|++|.+++..+  +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            456677777777777766 444 36677777777777777764332  6777777777777777663 33 567777777


Q ss_pred             EEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcC
Q 040451          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       134 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      +|++++|.+.. + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus       113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence            77777777763 2 3466777777777777776643  456666777777777776665544 56666666666666666


Q ss_pred             cccCCccccCCCCCccEEEccCCcccc
Q 040451          214 HGSLPLDNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (566)
                      .+ ++ .+ ..+++|+.|++++|.+..
T Consensus       188 ~~-l~-~l-~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          188 SD-LR-AL-AGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CB-CG-GG-TTCTTCSEEECCSEEEEC
T ss_pred             CC-Ch-HH-ccCCCCCEEEccCCcCcC
Confidence            53 22 22 255666666666665553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.7e-17  Score=146.38  Aligned_cols=151  Identities=14%  Similarity=0.208  Sum_probs=131.5

Q ss_pred             CcEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEc
Q 040451           34 QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA  113 (566)
Q Consensus        34 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L  113 (566)
                      .++++++++++.+. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            57899999999998 455 6899999999999999765 443 6889999999999999998778889999999999999


Q ss_pred             cCCcccccCCccccCCCCCCEEecccCc-CCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeecccccccc
Q 040451          114 SNNKLEAEIPVEIGNLLMLQILNIAENH-LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG  192 (566)
Q Consensus       114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      ++|.+++..+..++++++|++|++++|. ++ .++ .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9999998788889999999999999998 66 555 78999999999999999984 33 78899999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=7.3e-17  Score=158.07  Aligned_cols=174  Identities=15%  Similarity=0.208  Sum_probs=125.7

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCcccc-CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVS-NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  116 (566)
                      .++++++.+.. +|..+.  +.+++|+|++|.+++..+..+. ++++|++|++++|.++...+..|..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            57777777764 454443  4578888888888855555566 7888888888888887666677888888888888888


Q ss_pred             cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccc---cccCccceeeccccccccc
Q 040451          117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI---SHVRNLISFNVARNQFSGM  193 (566)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++....+..|.++++|++|++++|+++...+..+..+++|++|++++|.++...+..+   ..+++|+.|++++|.+...
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8876556667888888888888888886667778888888888888888874333334   4577788888888777766


Q ss_pred             h-hhhhCCCC--CcEEEcccCcCc
Q 040451          194 I-PLIYNISS--LQYIFIHTNRFH  214 (566)
Q Consensus       194 ~-~~l~~~~~--L~~L~l~~~~~~  214 (566)
                      + ..+..++.  ++.|++++|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            6 45555555  366666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.5e-16  Score=144.95  Aligned_cols=155  Identities=23%  Similarity=0.209  Sum_probs=116.9

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEE
Q 040451          377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLD  456 (566)
Q Consensus       377 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~  456 (566)
                      .+-+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+. .++...+...+.++.|+
T Consensus        19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            35678999998887 6666544  89999999999999888888999999999999999986 55544433333347777


Q ss_pred             ccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccc
Q 040451          457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       457 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      +++|.+.+..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            7777777665556677777777777777777 666667777777777777777776555667777777777777777763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.4e-17  Score=153.59  Aligned_cols=165  Identities=24%  Similarity=0.320  Sum_probs=85.1

Q ss_pred             ccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccc
Q 040451          331 MTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEV  410 (566)
Q Consensus       331 l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  410 (566)
                      +..+++.++.+++..  .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            344444455444322  345555555555555555532 2 44455555555555555553222  55555555555555


Q ss_pred             CcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccC
Q 040451          411 NNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEI  490 (566)
Q Consensus       411 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  490 (566)
                      |++++ ++. +.. ++|+.|++++|.+                         .+.  ..+..+++|+.|++++|.+++ +
T Consensus        95 N~l~~-l~~-~~~-~~L~~L~L~~N~l-------------------------~~~--~~l~~l~~L~~L~Ls~N~i~~-~  143 (263)
T 1xeu_A           95 NRLKN-LNG-IPS-ACLSRLFLDNNEL-------------------------RDT--DSLIHLKNLEILSIRNNKLKS-I  143 (263)
T ss_dssp             SCCSC-CTT-CCC-SSCCEEECCSSCC-------------------------SBS--GGGTTCTTCCEEECTTSCCCB-C
T ss_pred             CccCC-cCc-ccc-CcccEEEccCCcc-------------------------CCC--hhhcCcccccEEECCCCcCCC-C
Confidence            55543 221 111 4455555555544                         432  235556666666666666653 2


Q ss_pred             CcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          491 PTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       491 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            2 355566666666666666543  44555666666666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=6.2e-19  Score=181.94  Aligned_cols=122  Identities=16%  Similarity=0.267  Sum_probs=87.0

Q ss_pred             CCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEcc
Q 040451          155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSIS  234 (566)
Q Consensus       155 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  234 (566)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.+..++..+..+++|+.|++++|.+++ +| .+. .+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVA-NLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEECC
Confidence            47777777777763 454 777777777777777777666677777777777777777773 55 333 77888888888


Q ss_pred             CCcccccc-ccccccCCCCceEeccccccccccccc---ccCCCCCCEEEC
Q 040451          235 GNNLTGSL-QDSLSNATNLQGLEINGNLFSGKVSIN---FSRLQNLSRLNL  281 (566)
Q Consensus       235 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l  281 (566)
                      +|.++... |..+..+++|+.|++++|.+++..+..   +..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88887665 777888888888888888877554422   234677777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.1e-16  Score=152.79  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCC-eEecccCcceecCCccccCCCCCcEE
Q 040451          352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLT-QLILEVNNLQGKIPPSIGNCQNLILL  430 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L  430 (566)
                      +++|+.+++.+|.++.....+|.++.+|+++++.++ ++......|..+++|+ .+.+.+ .++...+.+|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            455566666555555555555555556666666554 4434444555555555 555555 4444444555555555555


Q ss_pred             EccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEc
Q 040451          431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDI  481 (566)
Q Consensus       431 ~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  481 (566)
                      ++.++.+                         ......+|.++++|+.++.
T Consensus       303 ~l~~n~i-------------------------~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKI-------------------------TTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCC-------------------------CEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCcc-------------------------CccchhhhcCCcchhhhcc
Confidence            5544444                         3445556778888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=5.9e-16  Score=149.67  Aligned_cols=265  Identities=12%  Similarity=0.066  Sum_probs=184.9

Q ss_pred             CCCCCCEEECCCCcCCCCCCCChhhhhhhcC-CCCCCEEEcccCccc--cccchhHhhccccccEEEccccCccCccchh
Q 040451          272 RLQNLSRLNLGENNLGTGTANDLDFITLLTN-CTKLEVLDLHSNRFG--GVLPFSLANLSITMTEIANGSNQISGTIPDV  348 (566)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  348 (566)
                      .+++++.|.++++- ..   .++   ..+.. +++|+.|++++|++.  ......+    +.+..+....+.+   ....
T Consensus        23 ~~~~l~~L~l~g~i-~~---~~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~~I---~~~a   88 (329)
T 3sb4_A           23 EANSITHLTLTGKL-NA---EDF---RHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMANFV---PAYA   88 (329)
T ss_dssp             HHHHCSEEEEEEEE-CH---HHH---HHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTTEE---CTTT
T ss_pred             hhCceeEEEEeccc-cH---HHH---HHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccccc---CHHH
Confidence            35678888887642 11   111   23333 789999999999876  2211111    1122333333322   2345


Q ss_pred             hhc--------cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcc----eec
Q 040451          349 IAN--------LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNL----QGK  416 (566)
Q Consensus       349 l~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l----~~~  416 (566)
                      |.+        +++|+.+.+.+ .++.....+|.+|++|+++++.+|.+....+..|..+.++..+.......    ...
T Consensus        89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i  167 (329)
T 3sb4_A           89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW  167 (329)
T ss_dssp             TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred             hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence            666        99999999998 88877788899999999999999988767777888877777777665322    112


Q ss_pred             CCccccCCCCCc-EEEccCCc------------------------ccccCchhhhccCCcCcEEEccCCcceecCCcccc
Q 040451          417 IPPSIGNCQNLI-LLTTRKNK------------------------LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVG  471 (566)
Q Consensus       417 ~~~~~~~~~~L~-~L~l~~~~------------------------l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~  471 (566)
                      ...+|..+..|+ .+.+....                        +.......+...+..++.+++++|++......+|.
T Consensus       168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence            234455566665 33333211                        00011112222245569999999999888888899


Q ss_pred             CCCCCCEEEccCCcccccCCcCCcCCCCCc-EEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCe
Q 040451          472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF  550 (566)
Q Consensus       472 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  550 (566)
                      +|++|+++++++| +..+...+|.+|++|+ .+++.+ .++...+..|..|++|+.|++++|.+....+..|.++++|+.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            9999999999998 7667778899999999 999988 777777788999999999999999998788888999999998


Q ss_pred             eeC
Q 040451          551 LNL  553 (566)
Q Consensus       551 L~l  553 (566)
                      |+.
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=2.8e-16  Score=146.32  Aligned_cols=167  Identities=18%  Similarity=0.326  Sum_probs=81.3

Q ss_pred             CCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecc
Q 040451           59 FPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIA  138 (566)
Q Consensus        59 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~  138 (566)
                      ++..++++++.++ .++ .+..+++|++|++++|.++. .+ .+..+++|++|++++|.+.+ ++. +.++++|++|+++
T Consensus        20 ~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence            3444444444444 222 24444555555555555442 22 34455555555555555542 222 5555555555555


Q ss_pred             cCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCC
Q 040451          139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLP  218 (566)
Q Consensus       139 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  218 (566)
                      +|++++ ++.. .. ++|++|++++|.+++ + ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+.  
T Consensus        94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence            555542 2221 12 555555555555542 1 23455555555555555555442 444555555555555555533  


Q ss_pred             ccccCCCCCccEEEccCCcccc
Q 040451          219 LDNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       219 ~~~~~~~~~L~~L~l~~~~~~~  240 (566)
                       .....+++|+.|++++|.+..
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -HHhccCCCCCEEeCCCCcccC
Confidence             122256666666666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=4.2e-17  Score=173.69  Aligned_cols=205  Identities=18%  Similarity=0.209  Sum_probs=117.1

Q ss_pred             CCCCCCCcccCccCCCCCcEEEEEcCCCCCcccCcccCcCCCCCcEEEcC-----CCCCccccCccccCCCCCCEEeCCC
Q 040451           17 NSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLP-----NKSFRGEIPHEVSNLFRLQNLTLTN   91 (566)
Q Consensus        17 ~~~~~c~w~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~-----~~~~~~~~~~~~~~l~~L~~L~l~~   91 (566)
                      .+.....|.+..+..  +++++++|.++.+... +..+.....|+.+.+.     .+.+. ..++.+..++.|++|+|++
T Consensus       158 ~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~  233 (727)
T 4b8c_D          158 DSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSN  233 (727)
T ss_dssp             --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred             CCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCC
Confidence            445567888777754  7899999998888753 3333333334443333     23333 4567788999999999999


Q ss_pred             ccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCc
Q 040451           92 NYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP  171 (566)
Q Consensus        92 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  171 (566)
                      |.+. .++..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|
T Consensus       234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp  309 (727)
T 4b8c_D          234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP  309 (727)
T ss_dssp             SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred             CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence            9998 67777889999999999999998 88999999999999999999999 78999999999999999999997 778


Q ss_pred             ccccccCccceeeccccccccch-hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCC
Q 040451          172 STISHVRNLISFNVARNQFSGMI-PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGN  236 (566)
Q Consensus       172 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  236 (566)
                      ..|.++++|+.|++++|.+.+.. ..+.... .+..+++++|.+.+.+|.       .|+.|+++.+
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD  369 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred             hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence            88999999999999999998766 3333221 223467888888766653       4556666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.1e-15  Score=135.11  Aligned_cols=109  Identities=28%  Similarity=0.393  Sum_probs=64.8

Q ss_pred             cEEEccCCcceecCCc-cccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCC
Q 040451          453 VLLDLSDNLLNGHFPA-EVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR  531 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  531 (566)
                      +.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence            4445555554433332 255666666666666666655555666666666666666666655555566666666666666


Q ss_pred             CcccccCCccCcCCCCCCeeeCCCCcCccc
Q 040451          532 NNLSGHIPQYLENLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       532 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~  561 (566)
                      |++++..|..+..+++|+.|++++|++.+.
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          112 NQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            666655566666666666666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.8e-16  Score=133.94  Aligned_cols=107  Identities=22%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             CCCcEEEcCCCCCc-cccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451           58 SFPRSINLPNKSFR-GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN  136 (566)
Q Consensus        58 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  136 (566)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.+|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34444444444443 33444344444444444444444322  3344444444444444444433333333344444444


Q ss_pred             cccCcCCCCCc--hhhcCCCCCCEEEeeCCccc
Q 040451          137 IAENHLKGQLP--ASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       137 l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~  167 (566)
                      +++|.+++ ++  ..+..+++|++|++++|.++
T Consensus       102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence            44444442 11  33344444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=8.6e-16  Score=129.93  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=68.6

Q ss_pred             CCCcEEEcCCCCCc-cccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451           58 SFPRSINLPNKSFR-GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN  136 (566)
Q Consensus        58 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  136 (566)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.+|..++++++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45566666666555 45555555566666666666655532  4455555555555555555544455555555566666


Q ss_pred             cccCcCCCC-CchhhcCCCCCCEEEeeCCcccccCc---ccccccCccceeecc
Q 040451          137 IAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVA  186 (566)
Q Consensus       137 l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  186 (566)
                      +++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            665555521 12445555556666665555553322   234555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=5.4e-14  Score=139.47  Aligned_cols=330  Identities=11%  Similarity=0.034  Sum_probs=197.6

Q ss_pred             CcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCC
Q 040451           50 LSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNL  129 (566)
Q Consensus        50 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l  129 (566)
                      -..+|.++.+|+++.|..+ ++..-..+|.++++|+.+++.++ ++.....+|..|.+|+.+.+..+- ......+|.++
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~  139 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGC  139 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecc
Confidence            3457788888888888643 55333456888888888888765 443456677888888877776542 22344556666


Q ss_pred             CCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEc
Q 040451          130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFI  208 (566)
Q Consensus       130 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l  208 (566)
                      ..++.......  ......+|..+.+|+.+.+..+. .......|.++.+|+.+.+..+ +.... ..+.++..|+.+.+
T Consensus       140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            54443333222  22345667788888888887653 3355566777888888887655 33333 55667777777766


Q ss_pred             ccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCC
Q 040451          209 HTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      ..+...  +....+ ....|+.+.+... ++.....++..+..++.+.+..+... .....|..+..++.+......+..
T Consensus       216 ~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          216 PNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             CTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT
T ss_pred             CCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc
Confidence            554332  222222 4456777766543 23344455666777777777655332 444556666666666655443321


Q ss_pred             CCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCcccccc
Q 040451          289 GTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGT  368 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  368 (566)
                               ..+..+.+|+.+.+..+ +.                         ..-..+|.++.+|+.+.+.++ ++..
T Consensus       291 ---------~~F~~~~~L~~i~l~~~-i~-------------------------~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          291 ---------KTFYGCSSLTEVKLLDS-VK-------------------------FIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             ---------TTTTTCTTCCEEEECTT-CC-------------------------EECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             ---------ccccccccccccccccc-cc-------------------------eechhhhcCCCCCCEEEeCCc-ccEE
Confidence                     23455666666655432 11                         112245667777777777543 5545


Q ss_pred             chhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEE
Q 040451          369 IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILL  430 (566)
Q Consensus       369 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  430 (566)
                      ...+|.+|.+|+.+++..+ ++.....+|..+++|+.+++..+ +. .+..+|..|++|+.+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            5667777777888777665 55455667777777777777654 22 233566777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=4.1e-15  Score=128.55  Aligned_cols=133  Identities=19%  Similarity=0.196  Sum_probs=108.5

Q ss_pred             CCCCCCEEeCCCccCC-CCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCE
Q 040451           80 NLFRLQNLTLTNNYFS-GKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  158 (566)
                      ..++|++|++++|.++ +.++..+..+++|++|++++|.+.+.  ..++.+++|++|++++|++++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999987 56777788999999999999998754  67888999999999999998667777778899999


Q ss_pred             EEeeCCcccccC-cccccccCccceeeccccccccchh----hhhCCCCCcEEEcccCcCc
Q 040451          159 IDVRGNRLGGRI-PSTISHVRNLISFNVARNQFSGMIP----LIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       159 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~  214 (566)
                      |++++|.+++.. +..+..+++|+.|++++|.+...+.    .+..+++|++|++++|...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999887432 2677888888888888888887664    6677888888888877765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=2.4e-17  Score=170.05  Aligned_cols=195  Identities=19%  Similarity=0.178  Sum_probs=99.8

Q ss_pred             ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCc-------------ccccCCccccCCCCCCeEe-cccCcceec
Q 040451          351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENF-------------LRGTIPSSLGNLTLLTQLI-LEVNNLQGK  416 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~~  416 (566)
                      .+++|+.|++++|.++ .+|..++.+++|++|++++|.             ..+..|..+..+++|+.|+ ++.+.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            3455555555555554 445555555555555554442             2233444555555565555 343322100


Q ss_pred             CCc-----ccc--CCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          417 IPP-----SIG--NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       417 ~~~-----~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      ...     .+.  ....|+.|++++|.++ .+|. +..+..+ +.|++++|.+. .+|..++.+++|+.|++++|.+++ 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence            000     000  0113556666666655 2443 4443333 55666666555 445556666666666666666653 


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccC-CcCCCCCCCCCEEeCCCCcccccCCcc---CcCCCCCCeee
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSI-PSTLSSLKSITELDLSRNNLSGHIPQY---LENLSFLSFLN  552 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~---l~~~~~L~~L~  552 (566)
                      +| .++.+++|++|+|++|.+++.. |..+..+++|+.|++++|++++..+..   +..+++|+.|+
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            44 4566666666666666666543 556666666666666666665443321   12355666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.6e-15  Score=130.07  Aligned_cols=127  Identities=17%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCc-cccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCC
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPH-EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~  116 (566)
                      +++++++.++ .+|..+..  ++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4555555553 34433322  566666666665532222 2555556666666666555444555555555555555555


Q ss_pred             cccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          117 KLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      ++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            555444444555555555555555555444555555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=1.1e-13  Score=136.34  Aligned_cols=254  Identities=13%  Similarity=0.160  Sum_probs=135.5

Q ss_pred             ccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCcccccc
Q 040451          241 SLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVL  320 (566)
Q Consensus       241 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  320 (566)
                      ....+|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+.....      ..+..|++|+.+++..+.++...
T Consensus       127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~------~aF~~c~~L~~l~l~~n~l~~I~  196 (401)
T 4fdw_A          127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE------DIFYYCYNLKKADLSKTKITKLP  196 (401)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS------STTTTCTTCCEEECTTSCCSEEC
T ss_pred             ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH------HHhhCcccCCeeecCCCcceEec
Confidence            334444443 4555555443 33334444444 2455555554 3333332      34555666666666555444221


Q ss_pred             chhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCC
Q 040451          321 PFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL  400 (566)
Q Consensus       321 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  400 (566)
                      .                         ..|. +.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++......|.. 
T Consensus       197 ~-------------------------~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-  247 (401)
T 4fdw_A          197 A-------------------------STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-  247 (401)
T ss_dssp             T-------------------------TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred             h-------------------------hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence            1                         1222 345555555432 44444455666666666666553 33234444444 


Q ss_pred             CCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEE
Q 040451          401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLD  480 (566)
Q Consensus       401 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~  480 (566)
                      .+|+.+.+. +.++.....+|..|++|+.+.+.++...                    .+........+|.+|++|+.++
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFE  306 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEEC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEE
Confidence            566666663 3344345566666777776666655432                    0111123344566777777777


Q ss_pred             ccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC-CCCeeeCCCCc
Q 040451          481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNH  557 (566)
Q Consensus       481 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~  557 (566)
                      +.+ .+......+|.+|++|+.++|..+ ++......|..+ +|+.+++++|.........|..++ .++.|++..+.
T Consensus       307 l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          307 IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            774 355455566777777777777443 554555667777 777777777766655555566553 56666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2e-15  Score=127.68  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             CcEEEEEcCCCCCc-ccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEE
Q 040451           34 QRVTGLDLRQQSVG-GVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFE  112 (566)
Q Consensus        34 ~~v~~l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  112 (566)
                      .++++|+++++.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            67999999999998 78888899999999999999999854  6789999999999999999976788788899999999


Q ss_pred             ccCCccccc-CCccccCCCCCCEEecccCcCCCCCc---hhhcCCCCCCEEEeeC
Q 040451          113 ASNNKLEAE-IPVEIGNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRG  163 (566)
Q Consensus       113 L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~  163 (566)
                      +++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999852 34789999999999999999995444   4789999999999863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.3e-14  Score=126.62  Aligned_cols=131  Identities=20%  Similarity=0.239  Sum_probs=85.5

Q ss_pred             cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451          428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  507 (566)
                      +.++++++.++ .+|..+.   +.++.|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34445555444 3332221   2335666666666555455567777777777777777755555567777777777777


Q ss_pred             CcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccC
Q 040451          508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV  562 (566)
Q Consensus       508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  562 (566)
                      |.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            7777655556677777777777777777555555667777777777777776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=127.32  Aligned_cols=106  Identities=29%  Similarity=0.302  Sum_probs=57.6

Q ss_pred             cEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451          453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      +.|++++|.+. .++..|..+++|+.|++++|.++...+..|.++++|++|++++|.++...+..|..+++|+.|++++|
T Consensus        34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence            44444444444 33344555555555555555555444455555555566666555555544455555555666666665


Q ss_pred             cccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          533 NLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       533 ~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .++...+..+..+++|+.|++++|++.
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          113 DISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCeeChhhhhcCccccEEEeCCCCee
Confidence            555444444555555566666555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=2.5e-13  Score=134.70  Aligned_cols=331  Identities=14%  Similarity=0.097  Sum_probs=162.0

Q ss_pred             cCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccc
Q 040451          169 RIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLS  247 (566)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  247 (566)
                      +...+|.++.+|+.+.+..+ +..+. ..+.+|++|+.+++..+ +. .+....+..+..|+.+.+..+ +......+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence            44455666667777666532 33333 44555666666665433 22 344444445555555444332 2223333444


Q ss_pred             cCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhc
Q 040451          248 NATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL  327 (566)
Q Consensus       248 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  327 (566)
                      ++..++.......  ......+|.++++|+.+.+.++. .....      ..+..+.+|+.+.+..+             
T Consensus       138 ~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~------~~F~~c~~L~~i~l~~~-------------  195 (394)
T 4fs7_A          138 GCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHN------GLFSGCGKLKSIKLPRN-------------  195 (394)
T ss_dssp             TCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECT------TTTTTCTTCCBCCCCTT-------------
T ss_pred             cccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceecc------ccccCCCCceEEEcCCC-------------
Confidence            4432222221111  11223344555555555554322 11111      23444445554444322             


Q ss_pred             cccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 040451          328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       328 ~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  407 (566)
                                   +.......|.++..|+.+.+..+... . ........+|+.+.+.... +......+..+..++.+.
T Consensus       196 -------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~  259 (394)
T 4fs7_A          196 -------------LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESIS  259 (394)
T ss_dssp             -------------CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred             -------------ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCCc-eecccccccccccceeEE
Confidence                         11112234566666766666554322 1 1223345677777775442 224445666677777777


Q ss_pred             cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc
Q 040451          408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  487 (566)
                      +..+... .....|..+..++.+......+    +...+.....++.+.+..+ +......+|.+|++|+.+++.++ ++
T Consensus       260 ~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          260 IQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             cCCCcce-eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence            7665443 4555667777777766654432    2223333333355555433 33344455666666666666543 44


Q ss_pred             ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCee
Q 040451          488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL  551 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  551 (566)
                      .+...+|.+|.+|+.+++..+ ++......|..|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            344556666666666666544 44444555666666666666543 22 223445555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=3.4e-14  Score=125.37  Aligned_cols=125  Identities=22%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      .++++++.+. .+|..+.  ++|++|+|++|.++ .+|..+..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3555555554 2333222  35566666666555 555555555555555555555554444445555555555555555


Q ss_pred             ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcc
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  166 (566)
                      ++...+..|.++++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5544444455555555555555555532233344455555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=7.2e-16  Score=164.24  Aligned_cols=192  Identities=20%  Similarity=0.171  Sum_probs=112.3

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeC-----CCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTL-----TNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML  132 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-----~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L  132 (566)
                      ++++.|+|.++.+.. .+..+.....|+.+.+     +.+.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            568888998888773 4443333333333333     233333 44667888999999999999988 778788899999


Q ss_pred             CEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCc
Q 040451          133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNR  212 (566)
Q Consensus       133 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  212 (566)
                      ++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.++++|+.|++++|.+..++..+..+++|++|++++|.
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence            99999999999 78888999999999999999998 77888999999999999999988777678888899999999988


Q ss_pred             CcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccc
Q 040451          213 FHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN  260 (566)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  260 (566)
                      +.+.+|..+......+..+++++|.++...|.      .|+.|+++.+
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            88666654431111222356777777655443      4455555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.9e-14  Score=125.27  Aligned_cols=132  Identities=14%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCC-CCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNL-FRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML  132 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L  132 (566)
                      +.++++|++|++++|.++ .++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            455666777777777666 4443 3333 3677777777766642  456666677777777776663322334666677


Q ss_pred             CEEecccCcCCCCCch--hhcCCCCCCEEEeeCCcccccCccc----ccccCccceeeccccccc
Q 040451          133 QILNIAENHLKGQLPA--SIGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVARNQFS  191 (566)
Q Consensus       133 ~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~  191 (566)
                      ++|++++|.++ .+|.  .+..+++|++|++++|.+. ..|..    +..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777665 4444  5666667777777776665 33442    556666666666666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=7e-13  Score=130.72  Aligned_cols=241  Identities=12%  Similarity=0.075  Sum_probs=135.3

Q ss_pred             CCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040451           57 LSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILN  136 (566)
Q Consensus        57 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  136 (566)
                      +..++.+.+.+. ++..-..+|.++ +|+.+++..+ ++.....+|..+ +|+.+.+.. .+......+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            355666665532 332223445554 5777777665 443445556664 577777765 44434445677777777777


Q ss_pred             cccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcc
Q 040451          137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       137 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +++++++.....+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +..+. ..+.+ .+|+.+.+. +.+. 
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-  260 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-  260 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-
Confidence            777776633333333 567777777644 44455566677777777777653 33333 33333 566666663 2233 


Q ss_pred             cCCccccCCCCCccEEEccCCccc-----cccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCC
Q 040451          216 SLPLDNGVNLPNLRYFSISGNNLT-----GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT  290 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (566)
                      .++...+..+++|+.+.+.++.+.     .....+|.+|++|+.+.+.+ .+......+|.++.+|+.+.+..+ +....
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            444455556666666666665443     34445566666666666663 344455555666666666666443 33333


Q ss_pred             CCChhhhhhhcCCCCCCEEEcccCccc
Q 040451          291 ANDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      .      .+|.++ +|+.+.+.++...
T Consensus       339 ~------~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          339 F------SAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             T------TSSSSS-CCCEEEECCSSCC
T ss_pred             H------HhCCCC-CCCEEEEcCCCCc
Confidence            3      345555 6666666665443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.3e-13  Score=120.08  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             CCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEec
Q 040451           58 SFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l  137 (566)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            57777777777777444445667777777777777776544455667777777777777766544445666667777777


Q ss_pred             ccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          138 AENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       138 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      ++|.+++..+..+..+++|++|++++|.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            777666433334456666666766666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=1.1e-13  Score=120.40  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=99.3

Q ss_pred             cccCCCCCCEEeCCCccCCCCCCcccccC-CCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCC
Q 040451           77 EVSNLFRLQNLTLTNNYFSGKILTDLSHC-SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSA  155 (566)
Q Consensus        77 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  155 (566)
                      .+.++.+|++|++++|.++. ++. +..+ ++|++|++++|.+++.  ..++++++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            35677889999999998873 443 4444 4899999999988753  57888888999999988888433344588888


Q ss_pred             CCEEEeeCCcccccCcc--cccccCccceeeccccccccchh----hhhCCCCCcEEEcccCcCc
Q 040451          156 LQEIDVRGNRLGGRIPS--TISHVRNLISFNVARNQFSGMIP----LIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       156 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~  214 (566)
                      |++|++++|.+. .+|.  .+..+++|+.|++++|.+...+.    .+..+++|+.|+++.|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888888886 4454  67788888888888888876654    3667777777777766543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.2e-15  Score=135.68  Aligned_cols=109  Identities=21%  Similarity=0.219  Sum_probs=47.7

Q ss_pred             cccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC
Q 040451           77 EVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL  156 (566)
Q Consensus        77 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L  156 (566)
                      .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            44444455555555554442 23 4444444444444444444 334334444444444444444442 22 34444444


Q ss_pred             CEEEeeCCcccccCc-ccccccCccceeecccccc
Q 040451          157 QEIDVRGNRLGGRIP-STISHVRNLISFNVARNQF  190 (566)
Q Consensus       157 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  190 (566)
                      ++|++++|.+....+ ..+..+++|+.|++++|.+
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            444444444432111 2334444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=1.1e-12  Score=113.10  Aligned_cols=105  Identities=24%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             CcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCC
Q 040451          427 LILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       427 L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  506 (566)
                      .+.+++++|.++ .+|..+.   ..++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            355666666665 4444332   333556666666655555555556666666666666654444445555666666666


Q ss_pred             CCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          507 DNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       507 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +|++++..+..|..+++|+.|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66665444444555566666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=4.4e-15  Score=132.11  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             ccCCCCCCEEeCCCccCCCCCCc------ccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhc
Q 040451           78 VSNLFRLQNLTLTNNYFSGKILT------DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIG  151 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~  151 (566)
                      +.....++.++++.+.+++..+.      .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445666666666666555444      77888888888888888874 66 7788888888888888888 6777777


Q ss_pred             CCCCCCEEEeeCCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEcccCcCccc
Q 040451          152 NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHTNRFHGS  216 (566)
Q Consensus       152 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~  216 (566)
                      .+++|++|++++|.+++ +| .+..+++|+.|++++|.+....  ..+..+++|++|++++|.+.+.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            77888888888888774 33 5777788888888888877654  3566667777777776666533

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=5e-11  Score=118.08  Aligned_cols=85  Identities=11%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             CCccccCCC-CCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCc---ccccCcccccccCccceeeccccccccch-hh
Q 040451          122 IPVEIGNLL-MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR---LGGRIPSTISHVRNLISFNVARNQFSGMI-PL  196 (566)
Q Consensus       122 ~~~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~  196 (566)
                      ...+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ +.... ..
T Consensus        55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            345677764 4888887764 554566777788888888876543   33344455666666666655433 22222 33


Q ss_pred             hhCCCCCcEEEc
Q 040451          197 IYNISSLQYIFI  208 (566)
Q Consensus       197 l~~~~~L~~L~l  208 (566)
                      +..+.+|+.+.+
T Consensus       133 F~~c~~L~~i~l  144 (394)
T 4gt6_A          133 FHHCEELDTVTI  144 (394)
T ss_dssp             TTTCTTCCEEEC
T ss_pred             hhhhcccccccc
Confidence            444444554444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.8e-12  Score=112.16  Aligned_cols=104  Identities=25%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             cEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451          428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       428 ~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  507 (566)
                      +.++++++.+. .+|..+.   ..++.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56666666665 5554332   3346666666666655555566666666666666666644344455666666666666


Q ss_pred             CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          508 NSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |+++...+..|..+++|+.|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666444444666666666666666665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=5.6e-11  Score=117.70  Aligned_cols=318  Identities=12%  Similarity=0.125  Sum_probs=194.1

Q ss_pred             hhhhCCC-CCcEEEcccCcCcccCCccccCCCCCccEEEccCCc---cccccccccccCCCCceEecccccccccccccc
Q 040451          195 PLIYNIS-SLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN---LTGSLQDSLSNATNLQGLEINGNLFSGKVSINF  270 (566)
Q Consensus       195 ~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  270 (566)
                      ..+.++. .|+.+.+... ++ .+....+..+.+|+.+.+..+.   ++.....+|.++..|+.+.+..+ +.......|
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            3444553 4777777543 33 5555566677888888876552   55555667777777777776544 333455566


Q ss_pred             cCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhh
Q 040451          271 SRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIA  350 (566)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  350 (566)
                      ..+.+|+.+.+.... .....      ..+..+..|+.+.+..+- .               .          .-..+|.
T Consensus       134 ~~c~~L~~i~lp~~~-~~I~~------~~F~~c~~L~~i~~~~~~-~---------------~----------I~~~aF~  180 (394)
T 4gt6_A          134 HHCEELDTVTIPEGV-TSVAD------GMFSYCYSLHTVTLPDSV-T---------------A----------IEERAFT  180 (394)
T ss_dssp             TTCTTCCEEECCTTC-CEECT------TTTTTCTTCCEEECCTTC-C---------------E----------ECTTTTT
T ss_pred             hhhccccccccccee-eeecc------cceeccccccccccccee-e---------------E----------ecccccc
Confidence            777777777775432 22222      345666777777665431 1               0          1112333


Q ss_pred             ccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCeEecccCcceecC
Q 040451          351 NLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS-------------LGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~l~~~~  417 (566)
                       ...|+.+.+.... ......++..+.+++................             +.....+..+.+.. .+....
T Consensus       181 -~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~  257 (394)
T 4gt6_A          181 -GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIE  257 (394)
T ss_dssp             -TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEEC
T ss_pred             -ccceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcc
Confidence             2468888876543 3355567888888888877655433111000             11223444454443 233355


Q ss_pred             CccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCC
Q 040451          418 PPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGC  497 (566)
Q Consensus       418 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  497 (566)
                      ..+|..|..|+.+.+.....  .+....+.....++.+.+. +.+......+|.+|.+|++++|.++ ++.+...+|.+|
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            67788999999999876543  3445555555555888885 4455566678999999999999865 554667889999


Q ss_pred             CCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCc
Q 040451          498 TSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE  559 (566)
Q Consensus       498 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  559 (566)
                      .+|+.+.|..+ ++......|.+|.+|+.+++.++... .  ..+..+.+|+.+.+..+.+.
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC-----------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCEE
Confidence            99999999654 66556678999999999999988654 2  45667788999988877553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=6.5e-12  Score=108.23  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451           61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  140 (566)
                      ++++++++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34445544444 344333  245555555555555444445555555555555555555333334455556666666666


Q ss_pred             cCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          141 HLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      ++++..+..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            555333334555566666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=9.2e-12  Score=107.64  Aligned_cols=104  Identities=25%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451           61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  140 (566)
                      +.++++++.+. .+|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34444444443 4443332  45555555555555444444555555555555555555332333455555555555555


Q ss_pred             cCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          141 HLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       141 ~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      +++...+..+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555333333555556666666655554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=6.2e-14  Score=136.90  Aligned_cols=185  Identities=18%  Similarity=0.096  Sum_probs=125.3

Q ss_pred             CCCCCEEEccCCcccccCCccc----c-CCCCCCeEecccCcceecCCccc-cCCCCCcEEEccCCcccccCchhhhc--
Q 040451          376 LKSLQMLFLNENFLRGTIPSSL----G-NLTLLTQLILEVNNLQGKIPPSI-GNCQNLILLTTRKNKLSGTVPRQLLH--  447 (566)
Q Consensus       376 ~~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~--  447 (566)
                      .+.|++|++++|.++......+    . ..++|++|++++|.++......+ ..+++|+.|++++|.+++.....+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4689999999999875433333    2 23799999999999874433333 34568999999999987654444432  


Q ss_pred             --cCCcCcEEEccCCcceec----CCccccCCCCCCEEEccCCccccc----CCcCCcCCCCCcEEeCCCCcccccC---
Q 040451          448 --IITLPVLLDLSDNLLNGH----FPAEVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTRSI---  514 (566)
Q Consensus       448 --~~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~---  514 (566)
                        ....++.|++++|.+++.    ++..+..+++|++|++++|.+.+.    +...+..+++|++|+|++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              234458899999988653    233456788899999999988743    2455677788999999999888532   


Q ss_pred             -CcCCCCCCCCCEEeCCCCcccccCCccCcCC---C--CCCeee--CCCCcCcc
Q 040451          515 -PSTLSSLKSITELDLSRNNLSGHIPQYLENL---S--FLSFLN--LSYNHFEG  560 (566)
Q Consensus       515 -~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~---~--~L~~L~--l~~~~l~~  560 (566)
                       +..+...++|+.|++++|+++......+..+   .  .|+.+.  +.++.+++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence             3344556889999999999875444444322   1  166666  66666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=5.7e-14  Score=137.15  Aligned_cols=184  Identities=16%  Similarity=0.105  Sum_probs=128.6

Q ss_pred             cCCCCEEecCCccccccchhhcc-----CCCCCCEEEccCCcccccCCccc-cCCCCCCeEecccCcceecCCccc----
Q 040451          352 LVNLNALGVESNQLAGTIPLAIG-----ELKSLQMLFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSI----  421 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~----  421 (566)
                      +++|+.|++++|.++......+.     ..++|++|++++|.+++.....+ ..+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            56899999999998765443332     23799999999999875433333 345789999999999875443333    


Q ss_pred             -cCCCCCcEEEccCCcccccCch----hhhccCCcCcEEEccCCcceecC----CccccCCCCCCEEEccCCccccc---
Q 040451          422 -GNCQNLILLTTRKNKLSGTVPR----QLLHIITLPVLLDLSDNLLNGHF----PAEVGNLKNLVSLDISSNMFSGE---  489 (566)
Q Consensus       422 -~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~---  489 (566)
                       ...++|+.|++++|.+++....    .+...+. ++.|++++|.+.+..    +..+...++|++|++++|.+++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             3568999999999998753322    3344444 599999999987543    44567788999999999999853   


Q ss_pred             -CCcCCcCCCCCcEEeCCCCcccccCCcCCCCC---CC--CCEEe--CCCCcccc
Q 040451          490 -IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSL---KS--ITELD--LSRNNLSG  536 (566)
Q Consensus       490 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~--L~~L~--l~~n~~~~  536 (566)
                       +...+..+++|++|+|++|.+++.....+..+   ..  |+.+.  +..+.+..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence             33445667999999999999986544333222   22  77777  77777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=1.6e-08  Score=99.43  Aligned_cols=164  Identities=11%  Similarity=0.104  Sum_probs=87.8

Q ss_pred             cCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEE
Q 040451          352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLT  431 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      ...+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|..+.+|+.+.
T Consensus       193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            3444444443322 1133344555666666666544 22244455566666776666554 3334455666666666665


Q ss_pred             ccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          432 TRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       432 l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      +..+ +. .                        .....|.+|++|+.+.+.++.++.....+|.+|.+|+.++|..+ ++
T Consensus       270 l~~~-i~-~------------------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~  322 (379)
T 4h09_A          270 FYAK-VK-T------------------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK  322 (379)
T ss_dssp             ECCC-CS-E------------------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             cccc-ce-e------------------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence            5432 11 1                        22334566666666666666665445556666666666666433 44


Q ss_pred             ccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCC
Q 040451          512 RSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS  546 (566)
Q Consensus       512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~  546 (566)
                      ......|.+|.+|+++.+..+ ++.....+|.+++
T Consensus       323 ~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          323 TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            444456666666666666544 4434445555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.1e-10  Score=111.53  Aligned_cols=102  Identities=22%  Similarity=0.187  Sum_probs=46.9

Q ss_pred             EEccCC-cccccCchhhhccCCcCcEEEccC-CcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCC
Q 040451          430 LTTRKN-KLSGTVPRQLLHIITLPVLLDLSD-NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       430 L~l~~~-~l~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  507 (566)
                      ++++++ .++ .+|. +..+..+ +.|++++ |.+.+..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L-~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCe-eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            344444 444 3444 3332222 4555553 455444444455555555555555555544444445555555555555


Q ss_pred             CcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          508 NSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       508 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |+++...+..+..++ |+.|++++|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555533333333333 555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=2e-08  Score=98.82  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             hhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          348 VIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       348 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      .|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            3445555555555554444444445555555555555432 332334445555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=7.6e-10  Score=107.63  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             EcCCC-CCcccCcccCcCCCCCcEEEcCC-CCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           40 DLRQQ-SVGGVLSPFVGNLSFPRSINLPN-KSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        40 ~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      +.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            33444 4543 555 77777777777775 77764444566777777777777777765555566666666666666666


Q ss_pred             ccccCCccccCCCCCCEEecccCcCC
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLK  143 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~  143 (566)
                      +.+..+..+..++ |++|++++|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6533333333333 666666655554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=3.1e-10  Score=109.67  Aligned_cols=187  Identities=13%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             hhhccCCCCEEecCCcccc---------ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCC
Q 040451          348 VIANLVNLNALGVESNQLA---------GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP  418 (566)
Q Consensus       348 ~l~~l~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  418 (566)
                      ....+++|+.|.+.+....         +.+...+..+|+|++|.+++|.-. .++. + .+++|++|++..|.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence            3456677777777554221         112334456778888888776311 2222 2 26777777777776654333


Q ss_pred             cccc--CCCCCcEEEccCC--cccccC-chhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcC
Q 040451          419 PSIG--NCQNLILLTTRKN--KLSGTV-PRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       419 ~~~~--~~~~L~~L~l~~~--~l~~~~-~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  493 (566)
                      ..+.  .+|+|+.|+++.+  ...+.. ...+..                 ..  ....+++|+.|++.+|.+.+..+..
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-----------------~l--~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-----------------LF--SKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-----------------GS--CTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHH-----------------HH--hcCCCCCcCEEeCCCCCCchHHHHH
Confidence            3332  5677777776432  111000 000000                 00  0135788999999888876432222


Q ss_pred             C---cCCCCCcEEeCCCCccccc----CCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCc
Q 040451          494 L---GGCTSLEYLGMQDNSFTRS----IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH  557 (566)
Q Consensus       494 ~---~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  557 (566)
                      +   ..+++|++|+|+.|.+.+.    ++..+..+++|++|++++|.++......+...- ..+++++++.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            2   3578899999998888764    234445678899999999988755444444311 3567787775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.6e-09  Score=104.74  Aligned_cols=83  Identities=10%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             cCccceeeccccccccch-hhhh---CCCCCcEEEcccCcCcccCCcccc---CCCCCccEEEccCCcccccccccccc-
Q 040451          177 VRNLISFNVARNQFSGMI-PLIY---NISSLQYIFIHTNRFHGSLPLDNG---VNLPNLRYFSISGNNLTGSLQDSLSN-  248 (566)
Q Consensus       177 l~~L~~L~l~~~~~~~~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~-  248 (566)
                      +++|+.|++.+|.+.+.. ..+.   .+++|++|+++.|.+.+.-...+.   ..+++|+.|+++.|.+++.....+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            456666666655554322 1121   355666666666665532111111   14567777777777776554444433 


Q ss_pred             CCCCceEeccccc
Q 040451          249 ATNLQGLEINGNL  261 (566)
Q Consensus       249 l~~L~~L~l~~~~  261 (566)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  2345555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=5.6e-09  Score=90.99  Aligned_cols=117  Identities=10%  Similarity=0.080  Sum_probs=66.7

Q ss_pred             CcccCcCCCCCcEEEcCCC-CCccc----cCccccCCCCCCEEeCCCccCCCC----CCcccccCCCCCEEEccCCcccc
Q 040451           50 LSPFVGNLSFPRSINLPNK-SFRGE----IPHEVSNLFRLQNLTLTNNYFSGK----ILTDLSHCSNVMKFEASNNKLEA  120 (566)
Q Consensus        50 ~~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~  120 (566)
                      +...+...++|++|+|++| .+.+.    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4445566777777777777 66532    344455667777777777776532    22334455666666666666653


Q ss_pred             c----CCccccCCCCCCEEec--ccCcCCCC----CchhhcCCCCCCEEEeeCCcc
Q 040451          121 E----IPVEIGNLLMLQILNI--AENHLKGQ----LPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus       121 ~----~~~~~~~l~~L~~L~l--~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~  166 (566)
                      .    +...+...+.|++|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2    2334455556666666  55555532    223333445566666665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.49  E-value=9.3e-09  Score=86.89  Aligned_cols=81  Identities=12%  Similarity=0.051  Sum_probs=37.5

Q ss_pred             cEEEccCCcceecCCccccCCCCCCEEEccCCc-ccccCCcCCcCC----CCCcEEeCCCCc-ccccCCcCCCCCCCCCE
Q 040451          453 VLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNM-FSGEIPTTLGGC----TSLEYLGMQDNS-FTRSIPSTLSSLKSITE  526 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~  526 (566)
                      +.||+++|.+++.....+..+++|++|++++|. +++.....+..+    ++|++|+|++|. +++.....+..+++|+.
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            455555555544444444455555555555553 333222223322    245555555552 44433333444555555


Q ss_pred             EeCCCCc
Q 040451          527 LDLSRNN  533 (566)
Q Consensus       527 L~l~~n~  533 (566)
                      |++++|+
T Consensus       144 L~L~~c~  150 (176)
T 3e4g_A          144 LFLSDLP  150 (176)
T ss_dssp             EEEESCT
T ss_pred             EECCCCC
Confidence            5555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=1.3e-08  Score=92.95  Aligned_cols=81  Identities=21%  Similarity=0.359  Sum_probs=51.8

Q ss_pred             ccCCCCCEEEccCCcccc--cCCccccCCCCCCEEecccCcCCCCCchhhcCCC--CCCEEEeeCCcccccCc-------
Q 040451          103 SHCSNVMKFEASNNKLEA--EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS--ALQEIDVRGNRLGGRIP-------  171 (566)
Q Consensus       103 ~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~-------  171 (566)
                      .++++|++|+|++|.+.+  .++..+..+++|++|+|++|.+++.  ..+..+.  +|++|++++|.+.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456777777777777764  3344556777777777777777732  3344444  77777777777765443       


Q ss_pred             ccccccCccceeec
Q 040451          172 STISHVRNLISFNV  185 (566)
Q Consensus       172 ~~l~~l~~L~~L~l  185 (566)
                      ..+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            23566777777753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.1e-07  Score=80.26  Aligned_cols=82  Identities=10%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             CCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc-ccccCCccccCC----CCCCEEecccCc-CCCCCchhhcCCCCC
Q 040451           83 RLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK-LEAEIPVEIGNL----LMLQILNIAENH-LKGQLPASIGNLSAL  156 (566)
Q Consensus        83 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-i~~~~~~~l~~l~~L  156 (566)
                      .|++||+++|.++......+..|++|++|+|++|. +++..-..++.+    ++|++|++++|. ++......+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44555555555444334444455555555555543 333222223332    245555555542 443333344445555


Q ss_pred             CEEEeeCC
Q 040451          157 QEIDVRGN  164 (566)
Q Consensus       157 ~~L~l~~~  164 (566)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=1.9e-07  Score=81.14  Aligned_cols=14  Identities=7%  Similarity=0.005  Sum_probs=6.3

Q ss_pred             CCCCcEEEccCCcc
Q 040451          424 CQNLILLTTRKNKL  437 (566)
Q Consensus       424 ~~~L~~L~l~~~~l  437 (566)
                      .++|++|++++|.+
T Consensus       150 n~~L~~L~L~~n~i  163 (185)
T 1io0_A          150 NTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCEEECCCSSH
T ss_pred             CCCcCEEeccCCCC
Confidence            34444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1.1e-06  Score=80.25  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=59.9

Q ss_pred             cCCCCCCEEEccCCcccc--cCCcCCcCCCCCcEEeCCCCccccc-CCcCCCCCCCCCEEeCCCCcccccCC-------c
Q 040451          471 GNLKNLVSLDISSNMFSG--EIPTTLGGCTSLEYLGMQDNSFTRS-IPSTLSSLKSITELDLSRNNLSGHIP-------Q  540 (566)
Q Consensus       471 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-------~  540 (566)
                      ..++.|++|+|++|.+++  .++..+..+++|+.|+|++|.+++. ....+..+ +|+.|++++|++.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            467889999999999885  3345566789999999999988854 11223333 89999999999886554       2


Q ss_pred             cCcCCCCCCeee
Q 040451          541 YLENLSFLSFLN  552 (566)
Q Consensus       541 ~l~~~~~L~~L~  552 (566)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356788888876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.31  E-value=0.00017  Score=61.98  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=17.1

Q ss_pred             hhccCCCCEEecCCccccccc----hhhccCCCCCCEEEccC
Q 040451          349 IANLVNLNALGVESNQLAGTI----PLAIGELKSLQMLFLNE  386 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~  386 (566)
                      +.....|+.|+|+.|.|....    ..++.....|++|++++
T Consensus        94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            334445555555555554331    12333344455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00013  Score=62.80  Aligned_cols=115  Identities=11%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             cccCcCCCCCcEEEcCCC-CCccc----cCccccCCCCCCEEeCCCccCCCCCC----cccccCCCCCEEEccCCccccc
Q 040451           51 SPFVGNLSFPRSINLPNK-SFRGE----IPHEVSNLFRLQNLTLTNNYFSGKIL----TDLSHCSNVMKFEASNNKLEAE  121 (566)
Q Consensus        51 ~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~  121 (566)
                      ...+.+-+.|++|+|+++ .+.+.    +-.++..-+.|++|+|++|.+.+...    ..+..-+.|++|+|++|.+.+.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            334455667888888774 66532    44455666778888888887764322    3334556777777777776542


Q ss_pred             ----CCccccCCCCCCEEecccCc---CCC----CCchhhcCCCCCCEEEeeCCc
Q 040451          122 ----IPVEIGNLLMLQILNIAENH---LKG----QLPASIGNLSALQEIDVRGNR  165 (566)
Q Consensus       122 ----~~~~~~~l~~L~~L~l~~~~---i~~----~~~~~l~~l~~L~~L~l~~~~  165 (566)
                          +.+++..-+.|++|+|+++.   +..    .+.+.+..-+.|+.|+++.+.
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                22334445557777776432   221    122334444566666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.19  E-value=0.00072  Score=54.27  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=44.6

Q ss_pred             CEEEccCCccc-ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          477 VSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       477 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888886 35665544  67899999999998666667788889999999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.80  E-value=0.0023  Score=51.33  Aligned_cols=57  Identities=18%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             cEEEccCCcce-ecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          453 VLLDLSDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       453 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      ..++.++..++ ..+|..+.  ++|++|+|++|.++...+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888876 24454443  57999999999999666677899999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	566
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 1e-20
 Identities = 66/296 (22%), Positives = 108/296 (36%), Gaps = 12/296 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTC--GHRRQRVTGLDLRQQSVGGV--LSPFVG 55
           K  L +P    SSW  + + C   W GV C    +  RV  LDL   ++     +   + 
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLSFPRSINL-PNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS 114
           NL +   + +    +  G IP  ++ L +L  L +T+   SG I   LS    ++  + S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 NNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQE-IDVRGNRLGGRIPST 173
            N L   +P  I +L  L  +    N + G +P S G+ S L   + +  NRL       
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIP 191

Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
            +     ++F             +   S      IH  +   +  L       NL    +
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
             N + G+L   L+    L  L ++ N   G++      LQ         N    G
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 5e-14
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 5/266 (1%)

Query: 301 TNCTKLEVLDLHSNRFGGV--LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNAL 358
           T   ++  LDL          +P SLANL         G N + G IP  IA L  L+ L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 359 GVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +    ++G IP  + ++K+L  L  + N L GT+P S+ +L  L  +  + N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 419 PSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVS 478
            S G+   L    T                + L  +    +        + +        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM--LEGDASVLFGSDKNTQ 224

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
               +          +G   +L  L +++N    ++P  L+ LK +  L++S NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 539 PQYLENLSFLSFLNLSYNHFEGKVPI 564
           PQ   NL        + N      P+
Sbjct: 285 PQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 61/273 (22%), Positives = 99/273 (36%), Gaps = 9/273 (3%)

Query: 244 DSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNC 303
           D+ +    +  L+++G        I  S L NL  LN     +G            +   
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLN--FLYIGGINNLVGPIPPAIAKL 100

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
           T+L  L +      G       +   T+  +    N +SGT+P  I++L NL  +  + N
Sbjct: 101 TQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 364 QLAGTIPLAIGELKSLQM-LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIG 422
           +++G IP + G    L   + ++ N L G IP +  NL L    +               
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 423 NCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDIS 482
           +            K S       + +      LDL +N + G  P  +  LK L SL++S
Sbjct: 220 DKNTQK---IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIP 515
            N   GEIP   G     +     +N      P
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPL 219
           D+R NR+ G +P  ++ ++ L S NV+ N   G IP   N+          N+     PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.7 bits (216), Expect = 3e-19
 Identities = 80/385 (20%), Positives = 133/385 (34%), Gaps = 29/385 (7%)

Query: 178 RNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNN 237
              +   + +   +  +    ++  +  +            +D    L NL   + S N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQ 77

Query: 238 LTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFI 297
           LT      L N T L  + +N N  +    +          L   +        N  +  
Sbjct: 78  LTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLAN------LSITMTEIANGSNQISGTIPDVIAN 351
            L  +   +  +   S                   L+   T      +    +   V+A 
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
           L NL +L   +NQ++   PL I    +L  L LN N L+     +L +LT LT L L  N
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 412 NLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVG 471
            +    P  +     L  L    N++S   P   L  +T         N       + + 
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL-----ELNENQLEDISPIS 304

Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSR 531
           NLKNL  L +  N  S   P  +   T L+ L   +N  +    S+L++L +I  L    
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGH 360

Query: 532 NNLSGHIPQYLENLSFLSFLNLSYN 556
           N +S   P  L NL+ ++ L L+  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 83/403 (20%), Positives = 142/403 (35%), Gaps = 41/403 (10%)

Query: 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           +  MK       +   +     +L  +  L      +K      +  L+ L +I+   N+
Sbjct: 22  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQ 77

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNL 225
           L    P  + ++  L+   +  NQ + + PL    +       +          D   NL
Sbjct: 78  LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI----DPLKNL 131

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
            NL    +S N ++     S   +                 S            NL    
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQL-------------SFGNQVTDLKPLANLTTLE 178

Query: 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345
               ++N +  I++L   T LE L   +N+   + P  +      + E++   NQ+    
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKD-- 233

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
              +A+L NL  L + +NQ++   PL    L  L  L L  N +    P +     L   
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLA----GLTAL 287

Query: 406 LILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465
             LE+N  Q +    I N +NL  LT   N +S   P   L  +     L  ++N ++  
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ---RLFFANNKVSD- 343

Query: 466 FPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508
             + + NL N+  L    N  S   P  L   T +  LG+ D 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 64/325 (19%), Positives = 110/325 (33%), Gaps = 51/325 (15%)

Query: 268 INFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LAN 326
           ++ + L  ++ L      +       +D +  L N   L  ++  +N+   + P   L  
Sbjct: 38  VSQTDLDQVTTLQADRLGI-----KSIDGVEYLNN---LTQINFSNNQLTDITPLKNLTK 89

Query: 327 LSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNE 386
           L   +      ++         +  L   N    + + L     L   EL S  +  ++ 
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 387 NFLRG-----------TIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKN 435
                           T    L NLT L +L +  N +       +    NL  L    N
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNN 207

Query: 436 KLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLG 495
           ++S   P  +L  +     L L+ N L       + +L NL  LD+++N  S   P  L 
Sbjct: 208 QISDITPLGILTNLDE---LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 496 GCTSLEYLGMQDNSFTRSIPSTLSS--------------------LKSITELDLSRNNLS 535
           G T L  L +  N  +   P    +                    LK++T L L  NN+S
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 536 GHIPQYLENLSFLSFLNLSYNHFEG 560
              P  + +L+ L  L  + N    
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 12  TSSWNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFR 71
           T+  +  +   Q + +       ++T L L    +   +SP  G  +        N+   
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLED 299

Query: 72  GEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLM 131
                   NL  L  LTL  N  S   ++ +S  + + +   +NNK+       + NL  
Sbjct: 300 ISPIS---NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVS--DVSSLANLTN 352

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164
           +  L+   N +    P  + NL+ + ++ +   
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 1e-16
 Identities = 50/257 (19%), Positives = 86/257 (33%), Gaps = 5/257 (1%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
              + + LH NR   V   S            + +              +       ++ 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN 423
           QL    P     L  L  L L+   L+   P     L  L  L L+ N LQ     +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483
             NL  L    N++S  VP +    +     L L  N +    P    +L  L++L + +
Sbjct: 152 LGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N  S      L    +L+YL + DN +     +       + +   S + +   +P   +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---Q 266

Query: 544 NLSFLSFLNLSYNHFEG 560
            L+      L+ N  +G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 48/263 (18%), Positives = 84/263 (31%), Gaps = 11/263 (4%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
              +   + GN ++     S     NL  L ++ N+ +   +  F+ L  L +L+L +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345
                              +L  L L        L   L      +  +    N +    
Sbjct: 92  QLRSVDPAT-----FHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
            D   +L NL  L +  N+++     A   L SL  L L++N +    P +  +L  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 406 LILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGH 465
           L L  NNL      ++   + L  L    N            +         S + +   
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCS 263

Query: 466 FPAEVGNLKNLVSLDISSNMFSG 488
            P     L       +++N   G
Sbjct: 264 LPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 3/240 (1%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
             +      I    N+IS           NL  L + SN LA     A   L  L+ L L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 385 NENFLRGTI-PSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPR 443
           ++N    ++ P++   L  L  L L+   LQ   P        L  L  + N L      
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 444 QLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
               +  L  L  L  N ++         L +L  L +  N  +   P        L  L
Sbjct: 148 TFRDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 504 GMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 563
            +  N+ +      L+ L+++  L L+ N             ++L     S +     +P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 41/191 (21%), Positives = 62/191 (32%), Gaps = 2/191 (1%)

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427
            +P+ I    + Q +FL+ N +     +S      LT L L  N L      +      L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
             L    N    +V     H +     L L    L    P     L  L  L +  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
                T     +L +L +  N  +         L S+  L L +N ++   P    +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 548 LSFLNLSYNHF 558
           L  L L  N+ 
Sbjct: 203 LMTLYLFANNL 213

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 36/226 (15%), Positives = 66/226 (29%), Gaps = 4/226 (1%)

Query: 15  WNNSINLCQWTGVTCGHRRQRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI 74
           W +S  L +                      +  V       L    +++L     +   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 75  PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQI 134
           P     L  LQ L L +N              N+       N++ +        L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI 194
           L + +N +    P +  +L  L  + +  N L       ++ +R L    +  N +    
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 195 PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
                 + LQ     ++    SLP      L       ++ N+L G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 37/252 (14%), Positives = 75/252 (29%), Gaps = 5/252 (1%)

Query: 36  VTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFS 95
              + L    +  V +           + L +           + L  L+ L L++N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 96  GKIL-TDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLS 154
             +          +         L+   P     L  LQ L + +N L+     +  +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFH 214
            L  + + GNR+          + +L    + +N+ + + P  +                
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 215 GSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQ 274
            +LP +    L  L+Y  ++ N        +      LQ    + +     +     RL 
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLP---QRLA 269

Query: 275 NLSRLNLGENNL 286
                 L  N+L
Sbjct: 270 GRDLKRLAANDL 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 7e-16
 Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 13/262 (4%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESN 363
               +LDL +N+   +      NL   +  +   +N+IS   P   A LV L  L +  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 364 QLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGN 423
           QL          L+ L++       +R ++ + L  + ++ +L        G    +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 424 CQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS 483
            + L  +      ++ T+P+ L   +T    L L  N +     A +  L NL  L +S 
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSG------H 537
           N  S     +L     L  L + +N   + +P  L+  K I  + L  NN+S        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 538 IPQYLENLSFLSFLNLSYNHFE 559
            P Y    +  S ++L  N  +
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 2e-15
 Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 5/184 (2%)

Query: 377 KSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNK 436
               +L L  N +         NL  L  LIL  N +    P +      L  L   KN+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 437 LSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG 496
           L     +    +  L V  +    +    F     N   +V L  +    SG       G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 497 CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 556
              L Y+ + D + T        SL   TEL L  N ++      L+ L+ L+ L LS+N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 557 HFEG 560
               
Sbjct: 206 SISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 6/236 (2%)

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFL 384
            +L      +   +N+I+        NL NL+ L + +N+++   P A   L  L+ L+L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQ 444
           ++N L+         L  L     E+  ++  +   +     +  L T   K SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 445 LLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG 504
              +  L   + ++D  +        G   +L  L +  N  +     +L G  +L  LG
Sbjct: 146 FQGMKKL-SYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 505 MQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 560
           +  NS +     +L++   + EL L+ N L   +P  L +  ++  + L  N+   
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 38/303 (12%), Positives = 82/303 (27%), Gaps = 38/303 (12%)

Query: 22  CQWTGVTCGHRR---------QRVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRG 72
           C    V C                  LDL+   +  +      NL    ++ L N     
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 73  EIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLML 132
             P   + L +L+ L L+ N               +   E    K+   +   +  ++++
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
           ++         G    +   +  L  I +    +            +L   ++  N+ + 
Sbjct: 130 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITK 185

Query: 193 MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNL 252
           +        +       +     ++   +  N P+LR   ++ N L              
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--------- 236

Query: 253 QGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLH 312
                             +  + +  + L  NN+    +ND       T       + L 
Sbjct: 237 ----------------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

Query: 313 SNR 315
           SN 
Sbjct: 281 SNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 5/144 (3%)

Query: 415 GKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK 474
           G + P    C   ++  +        VP+ L     L   LDL +N +      +  NLK
Sbjct: 1   GPVCPFRCQCHLRVVQCSDLGLEK--VPKDLPPDTAL---LDLQNNKITEIKDGDFKNLK 55

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNL 534
           NL +L + +N  S   P        LE L +  N           +L+ +   +     +
Sbjct: 56  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

Query: 535 SGHIPQYLENLSFLSFLNLSYNHF 558
              +   L  +  +          
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSS 139

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 7/280 (2%)

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGS 216
           Q +D+ G  L   +   +   + +I+F   R+     +   ++   +Q++ +  +    S
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 217 LPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI--NGNLFSGKVSINFSRLQ 274
                      L+  S+ G  L+  + ++L+  +NL  L +          +    S   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 275 NLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEI 334
            L  LNL      T     +    +    T+L +     N     L   +      +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 335 ANGSNQISGTIPDVIANLVNLNALGVES-NQLAGTIPLAIGELKSLQMLFLNENFLRGTI 393
            + S  +          L  L  L +     +     L +GE+ +L+ L +      GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 394 PSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTR 433
                    L  L +  ++      P+IGN +N  +   +
Sbjct: 242 QLLKEA---LPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 20/285 (7%)

Query: 278 RLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANG 337
            L+L   NL       L    ++             +     L    +   +   +++N 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI-------AFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 338 SNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPS-- 395
             ++S  +  +++    L  L +E  +L+  I   + +  +L  L L+            
Sbjct: 57  VIEVST-LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 396 ------SLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHII 449
                  L  L L         ++Q  +         L L   RKN     +   +    
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 450 TLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISS-NMFSGEIPTTLGGCTSLEYLGMQDN 508
            L  L      +L      E   L  L  L +S       E    LG   +L+ L +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 509 SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL 553
               ++     +L     L ++ ++ +      + N        +
Sbjct: 236 VPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 42/293 (14%), Positives = 96/293 (32%), Gaps = 30/293 (10%)

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTAN 292
           ++G NL   +   L +   +       +     ++ +FS  + +  ++L  + +      
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI-----E 59

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL-SITMTEIANGSNQISGTIPDVIAN 351
                 +L+ C+KL+ L L   R    +  +LA   ++    ++  S      +  ++++
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 352 LVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
              L+                  EL         E  ++  +      +T L       N
Sbjct: 120 CSRLD------------------ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161

Query: 412 NLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD-NLLNGHFPAEV 470
             +  +   +  C NL+ L    + +      Q    +     L LS    +      E+
Sbjct: 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKS 523
           G +  L +L +   +  G +         L+      + FT     T+ + K+
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKN 271

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 47/191 (24%), Positives = 71/191 (37%), Gaps = 7/191 (3%)

Query: 368 TIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL 427
            +P  +   K   +L L+EN L     ++L   T LTQL L  +  +       G    L
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 428 ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS 487
             L    N+L           +    +LD+S N L       +  L  L  L +  N   
Sbjct: 80  GTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
              P  L     LE L + +N+ T      L+ L+++  L L  N+L   IP+       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 548 LSFLNLSYNHF 558
           L F  L  N +
Sbjct: 197 LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 101 DLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160
           ++S  ++ ++       L   +P ++       IL+++EN L     A++   + L +++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLD 220
           +               +  L + +++ NQ   +  L   + +L  + +  NR    LPL 
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLG 118

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLN 280
               L  L+   + GN L       L+    L+ L +  N  +   +   + L+NL  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 281 LGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRF 316
           L EN+L T                 L    LH N +
Sbjct: 179 LQENSLYTIPKG-------FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 38/189 (20%), Positives = 56/189 (29%), Gaps = 11/189 (5%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENN 285
            +     +S N L      +L   T L  L ++              L  L  L+L  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 286 LGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTI 345
           L +          L             S      LP         + E+    N++    
Sbjct: 89  LQSLPLLGQTLPALTVLD--------VSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQ 405
           P ++     L  L + +N L       +  L++L  L L EN L  TIP       LL  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 406 LILEVNNLQ 414
             L  N   
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 7/209 (3%)

Query: 54  VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEA 113
           V  ++    +N   ++    +P ++        L L+ N      L  L   + + +   
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 114 SNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
              +L          +L    L+  +      LP     L AL  +DV  NRL       
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 174 ISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSI 233
           +  +  L    +  N+   + P +   +         N     LP      L NL    +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINGNLF 262
             N+L  ++      +  L    ++GN +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 497 CTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 556
             S   +     + T ++P  L   K  T L LS N L       L   + L+ LNL   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 557 HF 558
             
Sbjct: 66  EL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 475 NLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFT----RSIPSTLSSLKSITELDL 529
           ++ SLDI     S       L      + + + D   T    + I S L    ++ EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 530 SRNNLSGHIPQYL-----ENLSFLSFLNLSYNHF 558
             N L       +          +  L+L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 496 GCTSLEYLGMQDNSFT----RSIPSTLSSLKSITELDLSRNNLSGHIPQYL-----ENLS 546
             + L  L + D   +     S+ +TL +  S+ ELDLS N L       L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 547 FLSFLNLSYNHFEGKVP 563
            L  L L   ++  ++ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-06
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 251 NLQGLEINGNLFSGK-VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVL 309
           ++Q L+I     S    +     LQ    + L +  L      D+   + L     L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60

Query: 310 DLHSNRFGGVLPFSLANL 327
           +L SN  G V    +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 9/90 (10%)

Query: 465 HFPAEVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS 520
                      L  L ++    S      +  TL    SL  L + +N    +    L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 521 -----LKSITELDLSRNNLSGHIPQYLENL 545
                   + +L L     S  +   L+ L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 499 SLEYLGMQDNSFT-RSIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLSFLNL 553
            ++ L +Q    +       L  L+    + L    L+      I   L     L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 554 SYNHFEGK 561
             N     
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 455 LDLSDNLLN-GHFPAEVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNS 509
           LD+    L+   +   +  L+    + +     +      I + L    +L  L ++ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQY 541
                   +          + + +L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 8e-05
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGG----VLPFSL 324
                  L  L L + ++   + + L     L     L  LDL +N  G      L  S+
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 325 ANLSITMTEIANGSNQISGTIPDVIANLVNLN 356
                 + ++       S  + D +  L    
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 455 LDLSDNLLNG----HFPAEVGNLKNLVSLDISSNMFSGEIPTTLGG-----CTSLEYLGM 505
           L L+D  ++        A +    +L  LD+S+N         L          LE L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 506 QDNSFTRSIPSTLSSLK 522
            D  ++  +   L +L+
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 457 LSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPS 516
              N  +    +      +L  L++S+N    E+P        LE L    N     +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 552
              +LK   +L +  N L    P   E++  L   +
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N  S EI +      SLE L + +N     +P+    L+    L  S N+L+  +P+  +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ 324

Query: 544 NLSFLSFLNLSYNHFEG 560
           NL  L   ++ YN    
Sbjct: 325 NLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
             S +       N    EI         L+ LN++ N L  +LPA    L   + +    
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASF 313

Query: 164 NRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQ 204
           N L   +P       NL   +V  N       +  ++  L+
Sbjct: 314 NHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGV 319
           N  S ++        +L  LN+  N L          I L     +LE L    N     
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL----------IELPALPPRLERLIASFNHLAE- 318

Query: 320 LPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLN 356
           +P    NL     ++    N +    PD+  ++ +L 
Sbjct: 319 VPELPQNL----KQLHVEYNPLR-EFPDIPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 40/227 (17%), Positives = 67/227 (29%), Gaps = 23/227 (10%)

Query: 341 ISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400
           I+   PD    L N   +    + +  T+  A  +L  +  L      +       +  L
Sbjct: 9   INVIFPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYL 62

Query: 401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN 460
             L  L L+ N +    P         + L+    K    +               ++D 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 461 LLNGHFPAEVGNLKNLVSLDI-------------SSNMFSGEIPTTLGGCTSLEYLGMQD 507
                         +L  +               S         T L   + L  L   D
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 508 NSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 554
           N  +   P  L+SL ++ E+ L  N +S   P  L N S L  + L+
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGN-LFSGKVSINFSRLQNLSRLNLG 282
           +L  +   S  G  +T    + +    NL GLE+  N +       N +++  L      
Sbjct: 39  DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96

Query: 283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQI- 341
             N+             LT+    +V  L       VL   L  ++         + Q  
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 342 -----SGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSS 396
                  +    +ANL  L  L  + N+++   PL    L +L  + L  N +    P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP-- 212

Query: 397 LGNLTLLTQLILE 409
           L N + L  + L 
Sbjct: 213 LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 26/218 (11%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 56  NLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASN 115
            L+    I     +    +    ++L  +  L+      +   +  + + +N++  E  +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 116 NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N++    P++    +    L+         +       +         +       S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 176 HVRNLISFNVARNQFSGM---------------IPLIYNISSLQYIFIHTNRFHGSLPLD 220
            +   ++     +  +G+               +  + N+S L  +    N+     PL 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
           +   LPNL    +  N ++      L+N +NL  + + 
Sbjct: 193 S---LPNLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 28/220 (12%)

Query: 106 SNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           +N +K  A  + +   +     +L  +  L+     +       +  L+ L  ++++ N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 166 LGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNL 225
           +    P         +  +    +    I  + +I +L               L N   L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 226 --------------PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFS 271
                                +S  N   S    L+N + L  L+ + N  S       +
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLA 192

Query: 272 RLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDL 311
            L NL  ++L  N +          ++ L N + L ++ L
Sbjct: 193 SLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTL 224

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSG 192
           ++L++A   L       +  L  +  +D+  NRL    P+ ++ +R L       +    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQA-SDNALE 56

Query: 193 MIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG 240
            +  + N+  LQ + +  NR   S  +   V+ P L   ++ GN+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 455 LDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSI 514
           L L+   L       +  L  +  LD+S N      P  L     LE L   DN+     
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN-- 57

Query: 515 PSTLSSLKSITELDLSRNNL-SGHIPQYLENLSFLSFLNLSYNHFEGK 561
              +++L  + EL L  N L      Q L +   L  LNL  N    +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 380 QMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSG 439
           ++L L    L  T+   L  L L+T L L  N L+  +PP++   + L +L    N L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 440 TVPRQLLHIITLPVLLDLSDNLLNG-HFPAEVGNLKNLVSLDISSNMFSGE 489
                 L  +     L L +N L        + +   LV L++  N    E
Sbjct: 58  VDGVANLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 2/151 (1%)

Query: 104 HCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN-HLKGQLPASIGNLSALQEIDVR 162
                     + +    +    +     L  L I    HL+      +  L  L+ + + 
Sbjct: 6   CPHGSSGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 163 GNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNG 222
            + L    P        L   N++ N    +        SLQ + +  N  H S  L   
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                     +    L    Q  L++  N  
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 19/214 (8%)

Query: 341 ISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNL 400
           I     D            ++   +   +     EL S+  +  N + ++      +  L
Sbjct: 14  IKQIFSD--DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYL 67

Query: 401 TLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN 460
             +T+L L  N L    P +       + L   K K   ++                   
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-------- 119

Query: 461 LLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSS 520
               +  +++  L +L  L+      +     T+    +       +++    I   L+ 
Sbjct: 120 --EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAG 176

Query: 521 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 554
           L  +  L LS+N++S    + L  L  L  L L 
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 14/76 (18%), Positives = 21/76 (27%)

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHI 538
           L ++ N           G    E     +N+                 LD+SR  +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 539 PQYLENLSFLSFLNLS 554
              LENL  L   +  
Sbjct: 218 SYGLENLKKLRARSTY 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1e-33  Score=270.88  Aligned_cols=281  Identities=26%  Similarity=0.411  Sum_probs=238.6

Q ss_pred             CccCCCCCCCCCCCCCCCCCCCC--cccCccCCCC--CcEEEEEcCCCCCcc--cCcccCcCCCCCcEEEcCC-CCCccc
Q 040451            1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRR--QRVTGLDLRQQSVGG--VLSPFVGNLSFPRSINLPN-KSFRGE   73 (566)
Q Consensus         1 ~~~~~~~~~~~~~~w~~~~~~c~--w~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~~~~   73 (566)
                      ||+++.+|. ++.+|+++++||.  |.||+|....  .+|+.|+|+++++.+  .+|+.++++++|++|+|++ |.+.+.
T Consensus        14 ~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~   92 (313)
T d1ogqa_          14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc
Confidence            678888774 6899999999994  9999997653  389999999999987  4789999999999999997 789989


Q ss_pred             cCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCC
Q 040451           74 IPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNL  153 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  153 (566)
                      +|..++++++|++|++++|.+.+..+..+..+.+|+++++++|.+...+|..+++++.|+++++++|.+.+.+|..+..+
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc
Confidence            99999999999999999999998888889999999999999999988899999999999999999999998899999888


Q ss_pred             CCC-CEEEeeCCcccccCcccccccCccceeeccccccccch-hhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEE
Q 040451          154 SAL-QEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYF  231 (566)
Q Consensus       154 ~~L-~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (566)
                      ..+ +.+++++|++++..+..+..+..+ .+++..+...+.. ..+..+++++.+++.++.+.+.++ .+. .+++|+.|
T Consensus       173 ~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~-~~~~L~~L  249 (313)
T d1ogqa_         173 SKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG-LSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC-CCTTCCEE
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccc-cccccccc
Confidence            876 889999999998888888776554 6888877776655 556678888888888888875554 333 67888888


Q ss_pred             EccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451          232 SISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       232 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      ++++|++++..|..++++++|++|++++|++++.+|. +.++++|+.+++++|+.
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            8888888877888888888888888888888766663 56777788888877763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.1e-25  Score=219.60  Aligned_cols=190  Identities=31%  Similarity=0.410  Sum_probs=116.2

Q ss_pred             hccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcE
Q 040451          350 ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLIL  429 (566)
Q Consensus       350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  429 (566)
                      ..+++++.+.++++.+++..+  +..+++|++|++++|.+++ + ..+..+++|+.+++++|.+++..  .+..+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            344445555555554443322  2334455555555555442 1 23444555555555555554222  2444555555


Q ss_pred             EEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451          430 LTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS  509 (566)
Q Consensus       430 L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  509 (566)
                      ++++++.+.+ ++ .+...... +.+.++.|.+.+  ...+..+++++.|++++|.+++. + .+..+++|++|++++|+
T Consensus       268 L~l~~~~l~~-~~-~~~~~~~l-~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         268 LKLGANQISN-IS-PLAGLTAL-TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EECCSSCCCC-CG-GGTTCTTC-SEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSC
T ss_pred             eeccCcccCC-CC-cccccccc-cccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCC
Confidence            5555555542 11 12222222 555666665553  23467788889999999988743 3 37888999999999998


Q ss_pred             ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCC
Q 040451          510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN  556 (566)
Q Consensus       510 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  556 (566)
                      +++ ++ .+..+++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            884 33 57888999999999999886544  778889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.3e-25  Score=218.16  Aligned_cols=356  Identities=23%  Similarity=0.324  Sum_probs=188.5

Q ss_pred             eCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451           88 TLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus        88 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      .+....+++..  ....+.+|++|+++++.+++ + +.+..+++|++|++++|+++ .++ .+.++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~--~~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DIT-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEE--CHHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCcc--CHHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCc-cccCCcccccccccccccc
Confidence            44444444322  23566788888888888873 3 46778888888888888888 344 3788888888888888876


Q ss_pred             ccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccc
Q 040451          168 GRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLS  247 (566)
Q Consensus       168 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  247 (566)
                      +. + .++++++|+.|+++++.+.+... ......+.......+.+......... .............           
T Consensus       102 ~i-~-~l~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-----------  166 (384)
T d2omza2         102 DI-T-PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGL-TSLQQLSFGNQVT-----------  166 (384)
T ss_dssp             CC-G-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTC-TTCSEEEEEESCC-----------
T ss_pred             cc-c-ccccccccccccccccccccccc-cccccccccccccccccccccccccc-ccccccccccccc-----------
Confidence            43 2 36777788888877776665432 22334444444444433211110000 0111111111000           


Q ss_pred             cCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhc
Q 040451          248 NATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL  327 (566)
Q Consensus       248 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  327 (566)
                                        ....+.............+.....        .....+++++.++++++.+.+..+      
T Consensus       167 ------------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~l~l~~n~i~~~~~------  214 (384)
T d2omza2         167 ------------------DLKPLANLTTLERLDISSNKVSDI--------SVLAKLTNLESLIATNNQISDITP------  214 (384)
T ss_dssp             ------------------CCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG------
T ss_pred             ------------------hhhhhccccccccccccccccccc--------cccccccccceeeccCCccCCCCc------
Confidence                              001111222222222222221110        223344555555555555443221      


Q ss_pred             cccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 040451          328 SITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       328 ~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  407 (566)
                                           +..+++|+.+++++|.+++.  ..+..+++|+.+++++|.+++..  .+..+++|++++
T Consensus       215 ---------------------~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         215 ---------------------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             ---------------------GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ---------------------ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEee
Confidence                                 12233344444444443321  12333444444444444443211  233444444444


Q ss_pred             cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc
Q 040451          408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  487 (566)
                      ++++++.+..  .+..++.++.+.+.+|.+.+ + ..+...... +.+++++|++.+..  .+..+++|++|++++|.++
T Consensus       270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l-~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         270 LGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNL-TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTC-SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             ccCcccCCCC--cccccccccccccccccccc-c-cccchhccc-CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            4444443211  23344445555555544431 1 122222222 55566666555432  3678899999999999987


Q ss_pred             ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCC
Q 040451          488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                       .++ .+.++++|++|++++|++++..|  +.++++|++|++++|
T Consensus       343 -~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 -DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             344 58889999999999999986543  788999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=8.3e-26  Score=215.41  Aligned_cols=257  Identities=30%  Similarity=0.488  Sum_probs=227.6

Q ss_pred             CCCCEEEcccCcccc--ccchhHhhccccccEEEccc-cCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCC
Q 040451          304 TKLEVLDLHSNRFGG--VLPFSLANLSITMTEIANGS-NQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQ  380 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      .++++|+++++.+.+  ..|..+..+ ++|++|++++ |.+.+.+|..++++++|++|++++|.+.+..+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            478999999998886  356777776 6999999987 789999999999999999999999999988888889999999


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCC-cEEEccCCcccccCchhhhccCCcCcEEEccC
Q 040451          381 MLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNL-ILLTTRKNKLSGTVPRQLLHIITLPVLLDLSD  459 (566)
Q Consensus       381 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L-~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~  459 (566)
                      .+++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+.+++|++.+..+..+..+..  ..++++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--SEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence            99999999988899999999999999999999999999988888776 88999999999888877766543  4689999


Q ss_pred             CcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCC
Q 040451          460 NLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       460 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      +...+..+..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|+.|.++++|+.|+|++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            99998888889999999999999999985554 58889999999999999999999999999999999999999998888


Q ss_pred             ccCcCCCCCCeeeCCCCc-Cccc-CCCCC
Q 040451          540 QYLENLSFLSFLNLSYNH-FEGK-VPIEC  566 (566)
Q Consensus       540 ~~l~~~~~L~~L~l~~~~-l~~~-~p~~~  566 (566)
                      + +.++++|+.+++++|+ +.|. +| .|
T Consensus       286 ~-~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             C-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             C-cccCCCCCHHHhCCCccccCCCCC-CC
Confidence            6 4788999999999998 4554 55 44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.5e-22  Score=189.31  Aligned_cols=277  Identities=21%  Similarity=0.235  Sum_probs=170.6

Q ss_pred             CcEEEcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECC
Q 040451          203 LQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLG  282 (566)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  282 (566)
                      .+.++-++..++ .+|..+.   +++++|++++|+++...+..|.++++|++|++++|.+....+..|..+++|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            445555555555 5565433   567777777777775555567777777777777777776666667777777777777


Q ss_pred             CCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCC
Q 040451          283 ENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVES  362 (566)
Q Consensus       283 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~  362 (566)
                      +|++...+.         ...+.++.|.+..+.+..                         ..+..+.....+..+.+..
T Consensus        88 ~n~l~~l~~---------~~~~~l~~L~~~~n~l~~-------------------------l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          88 KNQLKELPE---------KMPKTLQELRVHENEITK-------------------------VRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             SSCCSBCCS---------SCCTTCCEEECCSSCCCB-------------------------BCHHHHTTCTTCCEEECCS
T ss_pred             CCccCcCcc---------chhhhhhhhhccccchhh-------------------------hhhhhhhcccccccccccc
Confidence            776654332         112345555555544432                         2223344445555666655


Q ss_pred             cccc--ccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCccccc
Q 040451          363 NQLA--GTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGT  440 (566)
Q Consensus       363 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~  440 (566)
                      +...  ......+..+++|+++++++|.+. .++..  .+++|++|++++|......+..+..++.++.|++++|.+.  
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~--  208 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--  208 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC--
T ss_pred             ccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc--
Confidence            5332  223345556667777777777665 33332  2456666666666666555555555555555555555443  


Q ss_pred             CchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcC---
Q 040451          441 VPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPST---  517 (566)
Q Consensus       441 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---  517 (566)
                                             +..+..+.++++|++|++++|+++ .+|.++..+++|++|++++|+++......   
T Consensus       209 -----------------------~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         209 -----------------------AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             -----------------------EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             -----------------------ccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence                                   344455677888888888888887 66778888888888888888887543322   


Q ss_pred             ---CCCCCCCCEEeCCCCccc--ccCCccCcCCC
Q 040451          518 ---LSSLKSITELDLSRNNLS--GHIPQYLENLS  546 (566)
Q Consensus       518 ---l~~l~~L~~L~l~~n~~~--~~~~~~l~~~~  546 (566)
                         +...++|+.|++++|++.  ...|..|+.+.
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             cchhcccCCCCEEECCCCcCccCcCCHhHhcccc
Confidence               345678888888888875  34455554433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.2e-22  Score=190.80  Aligned_cols=228  Identities=21%  Similarity=0.247  Sum_probs=117.6

Q ss_pred             CcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccC
Q 040451           50 LSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGN  128 (566)
Q Consensus        50 ~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  128 (566)
                      +|..+.  +.+++|+|++|+++ .++ .+|.++++|++|++++|.+....+..|..+++|++|++++|+++ .+|..+. 
T Consensus        25 lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~-   99 (305)
T d1xkua_          25 VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-   99 (305)
T ss_dssp             CCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred             cCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchh-
Confidence            444442  46777777777776 444 35677777777777777776555666777777777777777766 3443322 


Q ss_pred             CCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc--ccCcccccccCccceeeccccccccchhhhhCCCCCcEE
Q 040451          129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYI  206 (566)
Q Consensus       129 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  206 (566)
                       ..++.|.+.++.+....+..+.....++.++...+...  ...+..+..+++|+.+++++|.+...+..  .+++|++|
T Consensus       100 -~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L  176 (305)
T d1xkua_         100 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTEL  176 (305)
T ss_dssp             -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEE
T ss_pred             -hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEE
Confidence             35667777776666444444555666666666555432  12233445555555555555554433211  12344444


Q ss_pred             EcccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcC
Q 040451          207 FIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      ++++|......+..+. .++.+++|++++|.++...+..+.++++|++|++++|.++ ..|.++..+++|+.|++++|++
T Consensus       177 ~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         177 HLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             ECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             ECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCcc
Confidence            4444444322222222 3344444444444444333334444444444444444443 2223334444444444444444


Q ss_pred             C
Q 040451          287 G  287 (566)
Q Consensus       287 ~  287 (566)
                      +
T Consensus       255 ~  255 (305)
T d1xkua_         255 S  255 (305)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.1e-22  Score=184.89  Aligned_cols=206  Identities=23%  Similarity=0.177  Sum_probs=114.1

Q ss_pred             ccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEcc-CCcccccCCccccCCCCCCeEe
Q 040451          329 ITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLN-ENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       329 ~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~  407 (566)
                      ..+++|++++|.++...+..|.++++|+.|+++++.+....+..+..+..++.+.+. .+.+.+..+..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456666666666665444556666666666666666665555555556666666554 3334434455566666666666


Q ss_pred             cccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccc
Q 040451          408 LEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  487 (566)
                      +++|.+....+..+..+++|+.+++++|.++ .++...+.....++.|++++|++....+..|.++++|+.+++++|.++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            6666655444455555666666666666665 333332222222355555555555444455555555555555555555


Q ss_pred             ccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          488 GEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ...|..|.++++|++|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            444555555555555555555555444445555555555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.2e-22  Score=184.48  Aligned_cols=205  Identities=24%  Similarity=0.235  Sum_probs=92.2

Q ss_pred             CCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecC-CccccccchhhccCCCCCCEEE
Q 040451          305 KLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVE-SNQLAGTIPLAIGELKSLQMLF  383 (566)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  383 (566)
                      .+++|++++|.++...+..+..+ ..++.++++++.+.+..+..+..+..++.+.+. .+.+....+..+..+++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            34455555554443333333333 245555555554444444444444444444432 2233333334444445555555


Q ss_pred             ccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcce
Q 040451          384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLN  463 (566)
Q Consensus       384 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~  463 (566)
                      +++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|.+....+..+..+ +.++.+++++|++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l-~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc-cccchhhhhhcccc
Confidence            55554443333344444445555555555443334444444455555555554442222222222 22244555555554


Q ss_pred             ecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          464 GHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       464 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      +..+..|..+++|++|++++|.+....+..|+.+++|++|++++|++.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            444444555555555555555554333344444555555555554444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-21  Score=177.47  Aligned_cols=198  Identities=22%  Similarity=0.204  Sum_probs=123.0

Q ss_pred             cccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 040451          330 TMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  409 (566)
                      .+.+++.+++.++ .+|..+.  ++++.|+|++|.+++..+.+|..+++|++|++++|.++ .++ .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            4455666676666 3454442  46778888888877666667777888888888888776 333 34567788888888


Q ss_pred             cCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCccccc
Q 040451          410 VNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  489 (566)
                      +|++. ..+..+..+++|+.|++++|.+.. ++.........+..+++++|.+....+..+..++.|+.+++++|.++..
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccc-ccccccccccccccccccccccce-eeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            88776 445567777777777777777653 2222222223335566666665544444555556666666666666544


Q ss_pred             CCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          490 IPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      .++.|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            4455555666666666666655 45555555566666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-20  Score=170.79  Aligned_cols=201  Identities=22%  Similarity=0.211  Sum_probs=152.1

Q ss_pred             CCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCE
Q 040451          302 NCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQM  381 (566)
Q Consensus       302 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  381 (566)
                      ....+.+++.+++.++. .|..   +++.++.|++++|.+.+..+..|.++++|++|++++|.++.. + .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~---lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSC---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCCe-eCcC---cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence            44566667777777774 3433   245788888888888876667788888888888888888743 2 3567888888


Q ss_pred             EEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCc
Q 040451          382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNL  461 (566)
Q Consensus       382 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~  461 (566)
                      |++++|+++ ..+..+..+++|+.|+++++.+.+..+..+..+.+++.+.+++|.+. .++...+.....++.+++++|+
T Consensus        82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccc
Confidence            888888887 45667778888888888888887666777778888888888888887 5555555444445888888888


Q ss_pred             ceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCccc
Q 040451          462 LNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       462 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  511 (566)
                      +.+..+..|..+++|++|++++|.++ .+|+.+..+++|+.|+|++|++.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            88777777888888888888888887 67777777888888888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.9e-21  Score=191.56  Aligned_cols=288  Identities=17%  Similarity=0.160  Sum_probs=137.6

Q ss_pred             CCCEEecccCcCCCCC-chhhcCCCCCCEEEeeCCccccc----CcccccccCccceeeccccccccch-hhhhCCCCCc
Q 040451          131 MLQILNIAENHLKGQL-PASIGNLSALQEIDVRGNRLGGR----IPSTISHVRNLISFNVARNQFSGMI-PLIYNISSLQ  204 (566)
Q Consensus       131 ~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~  204 (566)
                      +|++||++.+++++.. ..-+..++++++|++++|.++..    ++..+..+++|+.|++++|.+.+.. ..+.      
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~------   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL------   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH------
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH------
Confidence            4566666666665321 22234556666666666655421    2223344555555555555543221 1111      


Q ss_pred             EEEcccCcCcccCCccccCCCCCccEEEccCCcccccc----ccccccCCCCceEecccccccccccccc-----cCCCC
Q 040451          205 YIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSL----QDSLSNATNLQGLEINGNLFSGKVSINF-----SRLQN  275 (566)
Q Consensus       205 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~  275 (566)
                                    ..+.....+|++|++++|.+++..    +..+..+++|++|++++|.+.+.....+     .....
T Consensus        77 --------------~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~  142 (460)
T d1z7xw1          77 --------------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  142 (460)
T ss_dssp             --------------HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             --------------HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccc
Confidence                          111112235666666666555332    2334555666666666665543221111     11112


Q ss_pred             CCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccch----hHhhccccccEEEccccCccCc----cch
Q 040451          276 LSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLPF----SLANLSITMTEIANGSNQISGT----IPD  347 (566)
Q Consensus       276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~----~~~  347 (566)
                      ...............  .......+...+.++.+.++++........    .+.........+....+.+...    ...
T Consensus       143 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (460)
T d1z7xw1         143 LEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  220 (460)
T ss_dssp             CCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             cccccccccccchhh--hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence            223333333222111  111223345566777777777665432211    1222233455555555544321    112


Q ss_pred             hhhccCCCCEEecCCcccccc-----chhhccCCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcceecCC
Q 040451          348 VIANLVNLNALGVESNQLAGT-----IPLAIGELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKIP  418 (566)
Q Consensus       348 ~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~  418 (566)
                      .+...+.++.+.+.++.+...     ..........++.+++++|.+...    ....+...+.++.+++++|++.....
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             cccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344566777777777765422     222334456777777777766532    22234456677777777776653222


Q ss_pred             ccc-----cCCCCCcEEEccCCccccc
Q 040451          419 PSI-----GNCQNLILLTTRKNKLSGT  440 (566)
Q Consensus       419 ~~~-----~~~~~L~~L~l~~~~l~~~  440 (566)
                      ..+     .....|+.+.+++|.+.+.
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             chhhccccccccccccccccccchhhh
Confidence            111     1234566666666665533

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.3e-16  Score=154.06  Aligned_cols=314  Identities=22%  Similarity=0.276  Sum_probs=162.5

Q ss_pred             CCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEccc
Q 040451          131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHT  210 (566)
Q Consensus       131 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  210 (566)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|.+......   .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            5778888888887 56653   457888888888777 555543   4566666666665433210   12344444444


Q ss_pred             CcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEecccccccccccccccCCCCCCEEECCCCcCCCCC
Q 040451          211 NRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLGENNLGTGT  290 (566)
Q Consensus       211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (566)
                      |.+. .+|.                          ++.+++|+.|+++++.+....    .....+..+.+..+..... 
T Consensus       108 n~l~-~lp~--------------------------~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~~-  155 (353)
T d1jl5a_         108 NQLE-KLPE--------------------------LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEEL-  155 (353)
T ss_dssp             SCCS-SCCC--------------------------CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-
T ss_pred             cccc-cccc--------------------------hhhhccceeeccccccccccc----cccccccchhhcccccccc-
Confidence            4443 2221                          334444555555444433111    1123344444443332211 


Q ss_pred             CCChhhhhhhcCCCCCCEEEcccCccccccchhHhhccccccEEEccccCccCccchhhhccCCCCEEecCCccccccch
Q 040451          291 ANDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSITMTEIANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIP  370 (566)
Q Consensus       291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  370 (566)
                             ..+..++.++.+.+..+.......                             .....+.+...+..+.. . 
T Consensus       156 -------~~l~~l~~l~~L~l~~n~~~~~~~-----------------------------~~~~~~~l~~~~~~~~~-~-  197 (353)
T d1jl5a_         156 -------PELQNLPFLTAIYADNNSLKKLPD-----------------------------LPLSLESIVAGNNILEE-L-  197 (353)
T ss_dssp             -------CCCTTCTTCCEEECCSSCCSSCCC-----------------------------CCTTCCEEECCSSCCSS-C-
T ss_pred             -------ccccccccceeccccccccccccc-----------------------------ccccccccccccccccc-c-
Confidence                   112344555555555554331100                             00111222222222221 1 


Q ss_pred             hhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCC
Q 040451          371 LAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIIT  450 (566)
Q Consensus       371 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  450 (566)
                      ..+..++.|+.+++++|... ..+   ....++..+.+..+.+.. .+   ...+.+....+..+...     .+..+..
T Consensus       198 ~~~~~l~~L~~l~l~~n~~~-~~~---~~~~~l~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~-----~l~~l~~  264 (353)
T d1jl5a_         198 PELQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLTD-LP---ELPQSLTFLDVSENIFS-----GLSELPP  264 (353)
T ss_dssp             CCCTTCTTCCEEECCSSCCS-SCC---SCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-----EESCCCT
T ss_pred             cccccccccccccccccccc-ccc---cccccccccccccccccc-cc---ccccccccccccccccc-----ccccccc
Confidence            12334455555555555443 222   123445555555554431 11   12234444544444332     1112222


Q ss_pred             cCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCC
Q 040451          451 LPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLS  530 (566)
Q Consensus       451 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  530 (566)
                      .....++..+.+.+.    ...+++|++|++++|.++ .+|..   +++|++|++++|+++ .+|+.   +++|+.|+++
T Consensus       265 ~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~  332 (353)
T d1jl5a_         265 NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVE  332 (353)
T ss_dssp             TCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             hhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence            224455666655432    244678999999999998 66643   578999999999998 45643   4689999999


Q ss_pred             CCcccccCCccCcCCCCCCeeeCC
Q 040451          531 RNNLSGHIPQYLENLSFLSFLNLS  554 (566)
Q Consensus       531 ~n~~~~~~~~~l~~~~~L~~L~l~  554 (566)
                      +|+++ .+|+..   .+|+.|++.
T Consensus       333 ~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         333 YNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             SSCCS-SCCCCC---TTCCEEECC
T ss_pred             CCcCC-CCCccc---cccCeeECc
Confidence            99987 556532   468888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7e-21  Score=191.54  Aligned_cols=166  Identities=19%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             ccCCCCceEeccccccccc-----ccccccCCCCCCEEECCCCcCCCCCCCChhhhhhhcCCCCCCEEEcccCccccccc
Q 040451          247 SNATNLQGLEINGNLFSGK-----VSINFSRLQNLSRLNLGENNLGTGTANDLDFITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       247 ~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      ...+.++.+.+.++.+...     ..........++.+++++|.+......  .....+...+.++.+++++|.+.+...
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            3455666666666654311     112233455667777776655432211  112334456677777777776654333


Q ss_pred             hhHhh----ccccccEEEccccCccCccch----hhhccCCCCEEecCCccccccc----hhhcc-CCCCCCEEEccCCc
Q 040451          322 FSLAN----LSITMTEIANGSNQISGTIPD----VIANLVNLNALGVESNQLAGTI----PLAIG-ELKSLQMLFLNENF  388 (566)
Q Consensus       322 ~~~~~----~~~~l~~l~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~  388 (566)
                      ..+..    ....++.+.++++.+......    .+...++|++|++++|.+.+..    ...+. ..+.|++|++++|.
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            22221    122344444444444332111    2223345555555555544321    11121 23445555555555


Q ss_pred             cccc----CCccccCCCCCCeEecccCcce
Q 040451          389 LRGT----IPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       389 ~~~~----~~~~~~~l~~L~~L~l~~~~l~  414 (566)
                      +++.    ++..+..+++|++|++++|+++
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            5432    2223334455555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=8.1e-17  Score=155.41  Aligned_cols=95  Identities=26%  Similarity=0.385  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEcc
Q 040451           35 RVTGLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEAS  114 (566)
Q Consensus        35 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~  114 (566)
                      ++++|||++++++ .+|+.   .++|++|+|++|+++ .+|+.   ..+|++|++++|.++. ++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--cccccccccc
Confidence            3455666666554 23432   345566666666555 55533   2355555665555541 111 0  1235555555


Q ss_pred             CCcccccCCccccCCCCCCEEecccCcCC
Q 040451          115 NNKLEAEIPVEIGNLLMLQILNIAENHLK  143 (566)
Q Consensus       115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  143 (566)
                      +|.+. .+| .++.+++|++|+++++.+.
T Consensus       107 ~n~l~-~lp-~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLP-ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-ccc-chhhhccceeecccccccc
Confidence            55554 333 2344555555555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.4e-18  Score=153.76  Aligned_cols=203  Identities=27%  Similarity=0.330  Sum_probs=156.0

Q ss_pred             EEccccCccCccchhhhccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcc
Q 040451          334 IANGSNQISGTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNL  413 (566)
Q Consensus       334 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  413 (566)
                      ++++.+.+++..  .++.+.+|+.|++.+|.+++.  ..+..+++|++|++++|.+++..  .+..+++++++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            344555555433  346778899999999988854  35788999999999999887433  378889999999999887


Q ss_pred             eecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcC
Q 040451          414 QGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       414 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  493 (566)
                      + .+ ..+..+++|+.+.++++...+.  ..+..... ...+.++++.+...  ..+..+++|++|++++|.+.+.  ..
T Consensus        98 ~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          98 K-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSN-LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             S-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             c-cc-cccccccccccccccccccccc--chhccccc-hhhhhchhhhhchh--hhhccccccccccccccccccc--hh
Confidence            6 33 3577889999999998877532  22333333 37888888887643  3477889999999999998733  33


Q ss_pred             CcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCC
Q 040451          494 LGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY  555 (566)
Q Consensus       494 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  555 (566)
                      ++++++|++|++++|++++ ++ .+..+++|+.|++++|++++..+  +.++++|+.|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            8899999999999999985 33 48889999999999999986543  78999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-17  Score=149.78  Aligned_cols=207  Identities=19%  Similarity=0.105  Sum_probs=142.9

Q ss_pred             CCCCEEecCCccccccchhhccCCCCCCEEEccCCccccc-CCccccCCCCCCeEeccc-CcceecCCccccCCCCCcEE
Q 040451          353 VNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGT-IPSSLGNLTLLTQLILEV-NNLQGKIPPSIGNCQNLILL  430 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L  430 (566)
                      +++++|++++|.++...+.+|.++++|++|++++|.+.+. .+..+..++.++++.+.. +.+....+..|..+++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4677888888877755555677788888888888876543 344567778888877654 45665666777788888888


Q ss_pred             EccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCC-CCCEEEccCCcccccCCcCCcCCCCCcEE-eCCCC
Q 040451          431 TTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLK-NLVSLDISSNMFSGEIPTTLGGCTSLEYL-GMQDN  508 (566)
Q Consensus       431 ~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~  508 (566)
                      ++++|.+....+.........+..+..+++.+....+..+..++ .++.|++++|.++...+..+. .+.+.++ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccccc
Confidence            88888776332322222233334556666677666556666554 788899999999854444444 4555555 56777


Q ss_pred             cccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCeeeCCCCcCcccCC
Q 040451          509 SFTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP  563 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p  563 (566)
                      .+++..+..|..+++|+.|++++|+++...+..+.+++.|+.+++.+.+   .+|
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~---~lp  239 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP  239 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS---CSC
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC---cCC
Confidence            8886555678889999999999999986666678888888888776643   555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.1e-17  Score=145.43  Aligned_cols=187  Identities=19%  Similarity=0.314  Sum_probs=87.5

Q ss_pred             CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451           80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI  159 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  159 (566)
                      .+.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..  .+.++++|++++++++.++ .+ ..+..+++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-cccccccccccc
Confidence            33444444444444432 1 23444444444444444444211  2444444555555444444 22 234444555555


Q ss_pred             EeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451          160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      +++++...+  ...+...+.++.+.++++.+... ..+..+++|++|++.+|.+.+..+   +..+++|++|++++|+++
T Consensus       113 ~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cchhccccchhhhhchhhhhchh-hhhccccccccccccccccccchh---hcccccceecccCCCccC
Confidence            554444331  12233344444444444443322 223344555555555554432111   125566666666666655


Q ss_pred             cccccccccCCCCceEecccccccccccccccCCCCCCEEECC
Q 040451          240 GSLQDSLSNATNLQGLEINGNLFSGKVSINFSRLQNLSRLNLG  282 (566)
Q Consensus       240 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  282 (566)
                      +.  ..++++++|++|++++|++++..+  ++++++|+.|+++
T Consensus       187 ~l--~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CC--GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CC--hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            32  225566666666666666654332  5566666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.8e-16  Score=137.93  Aligned_cols=166  Identities=22%  Similarity=0.342  Sum_probs=102.0

Q ss_pred             CCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEE
Q 040451           80 NLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEI  159 (566)
Q Consensus        80 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  159 (566)
                      .+..|++|++++|.++.  ...+..+++|++|++++|++++ ++ .++.+++|++|++++|+++ .++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC--chhHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccc
Confidence            34566666666666653  1235666666666666666653 22 3566666666666666666 333 46666667777


Q ss_pred             EeeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCccc
Q 040451          160 DVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLT  239 (566)
Q Consensus       160 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  239 (566)
                      ++++|.+..  ...+..++.++.+++++|.+.+. .....+++|+++++++|.+.+ ++. + ..+++|++|++++|.++
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n~l~~-i~~-l-~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-L-AGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccccccccccccccccccccc-ccccccccccccccccccccc-ccc-c-cCCCCCCEEECCCCCCC
Confidence            766666542  23456666667777666665543 344556677777777776653 322 2 26777888888887776


Q ss_pred             cccccccccCCCCceEeccc
Q 040451          240 GSLQDSLSNATNLQGLEING  259 (566)
Q Consensus       240 ~~~~~~l~~l~~L~~L~l~~  259 (566)
                      +. + .+.++++|++|++++
T Consensus       192 ~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BC-G-GGTTCTTCSEEEEEE
T ss_pred             CC-h-hhcCCCCCCEEEccC
Confidence            43 2 477778888887754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.9e-16  Score=135.49  Aligned_cols=163  Identities=29%  Similarity=0.400  Sum_probs=112.4

Q ss_pred             hccCCCCEEecCCccccccchhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCccccCCCCCcE
Q 040451          350 ANLVNLNALGVESNQLAGTIPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSIGNCQNLIL  429 (566)
Q Consensus       350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~  429 (566)
                      ..++++++|++.++.++..  ..+..+++|++|++++|++++..  .++++++|++|++++|.+.. ++ .+..+++|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccc
Confidence            3456677777777766643  24556677777777777766332  26667777777777776552 22 3556666666


Q ss_pred             EEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEeCCCCc
Q 040451          430 LTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNS  509 (566)
Q Consensus       430 L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  509 (566)
                      +++++|...                         .  ...+.++++|+.|++++|.+. .+ +.+..+++|++|++++|.
T Consensus       111 L~l~~~~~~-------------------------~--~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         111 LTLFNNQIT-------------------------D--IDPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             EECCSSCCC-------------------------C--CGGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSC
T ss_pred             ccccccccc-------------------------c--ccccchhhhhHHhhhhhhhhc-cc-cccccccccccccccccc
Confidence            666655543                         1  123677888999999999886 33 357888999999999998


Q ss_pred             ccccCCcCCCCCCCCCEEeCCCCcccccCCccCcCCCCCCee
Q 040451          510 FTRSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL  551 (566)
Q Consensus       510 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  551 (566)
                      +++.  ..+..+++|+.|++++|++++.  ..+.++++|++|
T Consensus       162 l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            8853  3478889999999999998853  347778888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.5e-16  Score=135.21  Aligned_cols=161  Identities=22%  Similarity=0.319  Sum_probs=80.0

Q ss_pred             CCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEE
Q 040451           81 LFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEID  160 (566)
Q Consensus        81 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~  160 (566)
                      ++++++|+++++.++.  ...++.+++|++|++++|++++. + .++++++|++|++++|.+. .++ .+..+++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccc
Confidence            3445555555554442  12344555555555555554422 2 2455555555555555544 222 244555555555


Q ss_pred             eeCCcccccCcccccccCccceeeccccccccchhhhhCCCCCcEEEcccCcCcccCCccccCCCCCccEEEccCCcccc
Q 040451          161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNISSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       161 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (566)
                      ++++....  ...+..+++|+.|++++|.+... +.+..+++|+.|++.+|.+.+ ++. + ..+++|++|++++|++++
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~-l~~-l-~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTD-LKP-L-ANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhccc-ccccccccccccccccccccC-Ccc-c-cCCCCCCEEECCCCCCCC
Confidence            55554432  12344455555555555554432 234455555566665555542 221 2 256667777777776664


Q ss_pred             ccccccccCCCCceE
Q 040451          241 SLQDSLSNATNLQGL  255 (566)
Q Consensus       241 ~~~~~l~~l~~L~~L  255 (566)
                      .  ..++++++|++|
T Consensus       187 i--~~l~~L~~L~~L  199 (199)
T d2omxa2         187 I--SVLAKLTNLESL  199 (199)
T ss_dssp             C--GGGGGCTTCSEE
T ss_pred             C--ccccCCCCCCcC
Confidence            3  235666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.5e-16  Score=141.38  Aligned_cols=215  Identities=14%  Similarity=0.082  Sum_probs=125.4

Q ss_pred             EEEcCCCCCcccCcccCcCCCCCcEEEcCCCCCccccC-ccccCCCCCCEEeCCCccCCCC-CCcccccCCCCCEEEccC
Q 040451           38 GLDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIP-HEVSNLFRLQNLTLTNNYFSGK-ILTDLSHCSNVMKFEASN  115 (566)
Q Consensus        38 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~  115 (566)
                      .++.++.+++ .+|..+.  +++++|+|++|.++ .++ .+|.++++|++|++++|.+... .+..|..+++++++.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            3455556665 4554442  46888888888887 444 4578888888888888876543 344577788888887764


Q ss_pred             -CcccccCCccccCCCCCCEEecccCcCCCCCch-hhcCCCCCCEEEeeCCcccccCcccccccC-ccceeecccccccc
Q 040451          116 -NKLEAEIPVEIGNLLMLQILNIAENHLKGQLPA-SIGNLSALQEIDVRGNRLGGRIPSTISHVR-NLISFNVARNQFSG  192 (566)
Q Consensus       116 -~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~  192 (566)
                       +.+....+..|.++++|++++++++.+....+. .+..++.+..+...++.+....+..+.+++ .++.+++++|++..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             455555566677788888888888777632221 223344455555555555544445555543 56666776666665


Q ss_pred             chhhhhCCCCCcEEE-cccCcCcccCCccccCCCCCccEEEccCCccccccccccccCCCCceEec
Q 040451          193 MIPLIYNISSLQYIF-IHTNRFHGSLPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI  257 (566)
Q Consensus       193 ~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  257 (566)
                      .....+..++++++. +.+|.+. .++...+..+++|++|++++|+++...+..+.++++|+.+++
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            554444445544443 3333443 455444445556666666655555443334444444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.8e-16  Score=135.56  Aligned_cols=179  Identities=19%  Similarity=0.317  Sum_probs=128.5

Q ss_pred             cCCCCCcccCcccCcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccc
Q 040451           41 LRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEA  120 (566)
Q Consensus        41 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  120 (566)
                      +....+++.++.  .++..|++|+++++.++ .+++ +..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ 
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~-l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-  103 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-  103 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh-HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-
Confidence            444444433322  34667888888888877 4443 6778888888888888774 22 4677888888888888877 


Q ss_pred             cCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCcccccCcccccccCccceeeccccccccchhhhhCC
Q 040451          121 EIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVARNQFSGMIPLIYNI  200 (566)
Q Consensus       121 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~  200 (566)
                      .++ .+.++++|+.|+++++.+. . ...+..+++++.+++++|.+..  +..+..+++|+.+++++|++.+.. .+.++
T Consensus       104 ~l~-~l~~l~~L~~L~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l  177 (210)
T d1h6ta2         104 DLS-SLKDLKKLKSLSLEHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-PLAGL  177 (210)
T ss_dssp             CGG-GGTTCTTCCEEECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-GGTTC
T ss_pred             ccc-ccccccccccccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccccc-cccCC
Confidence            344 5788888888888888776 3 3457788888888888887753  345677888888888888877553 47778


Q ss_pred             CCCcEEEcccCcCcccCCccccCCCCCccEEEccC
Q 040451          201 SSLQYIFIHTNRFHGSLPLDNGVNLPNLRYFSISG  235 (566)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  235 (566)
                      ++|++|++++|.++ .++ .+ ..+++|++|++++
T Consensus       178 ~~L~~L~Ls~N~i~-~l~-~l-~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         178 TKLQNLYLSKNHIS-DLR-AL-AGLKNLDVLELFS  209 (210)
T ss_dssp             TTCCEEECCSSCCC-BCG-GG-TTCTTCSEEEEEE
T ss_pred             CCCCEEECCCCCCC-CCh-hh-cCCCCCCEEEccC
Confidence            88888888888876 454 23 3788888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.3e-17  Score=150.22  Aligned_cols=181  Identities=17%  Similarity=0.162  Sum_probs=100.4

Q ss_pred             cCCCCEEecCCcccccc-chhhccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC-cceec-CCccccCCCCCc
Q 040451          352 LVNLNALGVESNQLAGT-IPLAIGELKSLQMLFLNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGK-IPPSIGNCQNLI  428 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~  428 (566)
                      ..+|++|+++++.++.. ....+..+++|++|++++|.+++..+..+.++++|++|++++| .++.. +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666655433 2333455666666666666665555555556666666666664 23321 112234566666


Q ss_pred             EEEccCCc-cccc-CchhhhccCCcCcEEEccCCc--ceec-CCccccCCCCCCEEEccCCc-ccccCCcCCcCCCCCcE
Q 040451          429 LLTTRKNK-LSGT-VPRQLLHIITLPVLLDLSDNL--LNGH-FPAEVGNLKNLVSLDISSNM-FSGEIPTTLGGCTSLEY  502 (566)
Q Consensus       429 ~L~l~~~~-l~~~-~~~~~~~~~~~l~~L~l~~~~--~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~  502 (566)
                      +|++++|. +++. +...+....+.++.|+++++.  +.+. +...+.++++|++|++++|. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            66666653 3221 122233344445666666542  2221 11123456777777777653 55555556667777777


Q ss_pred             EeCCCC-cccccCCcCCCCCCCCCEEeCCCC
Q 040451          503 LGMQDN-SFTRSIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       503 L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      |++++| .+++.....+.++++|+.|++++|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            777775 466555555666777777777776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=3.1e-16  Score=136.48  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             EEcCCCCCcccCcccCcCCCCCcEEEcCCCCCcccc-CccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCc
Q 040451           39 LDLRQQSVGGVLSPFVGNLSFPRSINLPNKSFRGEI-PHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNK  117 (566)
Q Consensus        39 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~  117 (566)
                      ++.++++++ .+|..+.  +++++|+|++|.++..+ +..|.++++|++|++++|.+....+..+..+++|++|++++|+
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            444555554 3443332  45666666666665332 3334555666666666665554455555555555555555555


Q ss_pred             ccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCccc
Q 040451          118 LEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       118 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      +....+.+|.++++|++|+|++|+++...+.+|..+++|++|++++|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            55444445555555555555555555444444555555555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.3e-16  Score=145.31  Aligned_cols=62  Identities=21%  Similarity=0.089  Sum_probs=33.2

Q ss_pred             hccCCCCEEecCCc-cccccchhhccCCCCCCEEEccCC-cccccCCccccCCCCCCeEecccC
Q 040451          350 ANLVNLNALGVESN-QLAGTIPLAIGELKSLQMLFLNEN-FLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       350 ~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~  411 (566)
                      ..+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|++|++.+|
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34555666666554 244444445555566666666654 344444444555566666666555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.1e-15  Score=131.13  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=60.8

Q ss_pred             eEecccCcceecCCccccCCCCCcEEEccCCcccccCchhhhccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCC
Q 040451          405 QLILEVNNLQGKIPPSIGNCQNLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSN  484 (566)
Q Consensus       405 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  484 (566)
                      .++.++++++ .+|..+  .+++++|++++|+++..++...+.....++.|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4555555555 344333  1455555555555543333333222222245555555554444444444555555555555


Q ss_pred             cccccCCcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          485 MFSGEIPTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       485 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ++....+++|.++++|++|+|++|.++...+..|..+++|+.|++++|++.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            554444444555555555555555555444444445555555555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=1.2e-15  Score=146.29  Aligned_cols=109  Identities=19%  Similarity=0.286  Sum_probs=69.8

Q ss_pred             cEEEccCCcceec-----CCccccCCCCCCEEEccCCccccc----CCcCCcCCCCCcEEeCCCCcccccCCc----CCC
Q 040451          453 VLLDLSDNLLNGH-----FPAEVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTRSIPS----TLS  519 (566)
Q Consensus       453 ~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~  519 (566)
                      +.+++++|.+...     +...+..+++|+.|++++|.++..    +...+..++.|++|++++|.+++....    .+.
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            5555555554321     223456778888888888887633    334567778888888888887753222    222


Q ss_pred             --CCCCCCEEeCCCCccccc----CCccCc-CCCCCCeeeCCCCcCccc
Q 040451          520 --SLKSITELDLSRNNLSGH----IPQYLE-NLSFLSFLNLSYNHFEGK  561 (566)
Q Consensus       520 --~l~~L~~L~l~~n~~~~~----~~~~l~-~~~~L~~L~l~~~~l~~~  561 (566)
                        ..+.|+.|++++|.+...    +...+. +.++|+.|+|++|.+.++
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence              236788888888887642    223332 467888888888888653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9e-15  Score=122.46  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CcCCCCCcEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCC
Q 040451           54 VGNLSFPRSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQ  133 (566)
Q Consensus        54 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  133 (566)
                      +.++.++++|+|++|+++ .+++.+..+++|++|++++|.++. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            345555666666666665 445444556666666666666552 2 2355566666666666665533222334555666


Q ss_pred             EEecccCcCCCCCc--hhhcCCCCCCEEEeeCCccc
Q 040451          134 ILNIAENHLKGQLP--ASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       134 ~L~l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~  167 (566)
                      +|++++|+++ .++  ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceecccccc-ccccccccccccccchhhcCCCccc
Confidence            6666666555 222  23455555666666555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.3e-14  Score=111.72  Aligned_cols=101  Identities=24%  Similarity=0.378  Sum_probs=47.3

Q ss_pred             EEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEEeeCCc
Q 040451           86 NLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR  165 (566)
Q Consensus        86 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  165 (566)
                      +|++++|.++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.++ .++ .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            4455555444 222 2444555555555555544 34444555555555555555554 222 34455555555555555


Q ss_pred             ccccC-cccccccCccceeeccccccc
Q 040451          166 LGGRI-PSTISHVRNLISFNVARNQFS  191 (566)
Q Consensus       166 ~~~~~-~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      +.... ...+..+++|+.|++++|.+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            44221 123444455555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1e-14  Score=139.64  Aligned_cols=140  Identities=17%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             CCCCCCEEEccCCccccc----CCccccCCCCCCeEecccCcceec-----CCccccCCCCCcEEEccCCcccccCchhh
Q 040451          375 ELKSLQMLFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGK-----IPPSIGNCQNLILLTTRKNKLSGTVPRQL  445 (566)
Q Consensus       375 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  445 (566)
                      ..+.|+.+.+++|.+.+.    +...+...+.|++|++++|.+...     +...+..+++|+.|++++|.+++.....+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            345666666666655432    222334456666666666665421     22334556666666666666542211111


Q ss_pred             hccCCcCcEEEccCCcceecCCccccCCCCCCEEEccCCcccccCC----cCCc--CCCCCcEEeCCCCcccccC----C
Q 040451          446 LHIITLPVLLDLSDNLLNGHFPAEVGNLKNLVSLDISSNMFSGEIP----TTLG--GCTSLEYLGMQDNSFTRSI----P  515 (566)
Q Consensus       446 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~--~~~~L~~L~l~~~~~~~~~----~  515 (566)
                                           ...+..++.|++|++++|.+.+...    +.+.  ..+.|++|++++|.++...    .
T Consensus       236 ---------------------~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~  294 (344)
T d2ca6a1         236 ---------------------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  294 (344)
T ss_dssp             ---------------------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             ---------------------cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence                                 1234455666666776666653311    2222  2356777777777665422    1


Q ss_pred             cCCC-CCCCCCEEeCCCCccc
Q 040451          516 STLS-SLKSITELDLSRNNLS  535 (566)
Q Consensus       516 ~~l~-~l~~L~~L~l~~n~~~  535 (566)
                      ..+. +++.|+.|++++|.+.
T Consensus       295 ~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         295 TVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCCCEEECCCCcCC
Confidence            2222 3567777777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-14  Score=118.08  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=93.4

Q ss_pred             ccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC
Q 040451           78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  157 (566)
                      +.+..++++|+|++|.++ .++..+..+++|++|++++|.+.. + ..+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            567778888999999887 445556778888888888888873 4 3578888888888888888844444456788888


Q ss_pred             EEEeeCCcccccC-cccccccCccceeeccccccccch----hhhhCCCCCcEEE
Q 040451          158 EIDVRGNRLGGRI-PSTISHVRNLISFNVARNQFSGMI----PLIYNISSLQYIF  207 (566)
Q Consensus       158 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~  207 (566)
                      +|++++|.+.... ...+..+++|++|++++|.+...+    ..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888876321 135677788888888888776554    2355667777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.4e-13  Score=109.32  Aligned_cols=102  Identities=25%  Similarity=0.362  Sum_probs=61.5

Q ss_pred             cEEEcCCCCCccccCccccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccC
Q 040451           61 RSINLPNKSFRGEIPHEVSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~  140 (566)
                      |+|+|++|+++ .++. +..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            45666666665 4442 556666666666666665 44555666666666666666665 233 4666666777777776


Q ss_pred             cCCCCC-chhhcCCCCCCEEEeeCCccc
Q 040451          141 HLKGQL-PASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       141 ~i~~~~-~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      +++... ...+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666321 234566677777777777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.3e-13  Score=119.55  Aligned_cols=84  Identities=24%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             ccCCCCCCEEeCCCccCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCC
Q 040451           78 VSNLFRLQNLTLTNNYFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  157 (566)
                      +..+++|++|++++|.++. + ..+..+++|++|++++|.++ .++..+..+++|++|++++|+++ .+ ..+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCC-c-ccccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-cccccccccc
Confidence            3334444444444444431 1 12334444444444444433 22222222233444444444443 11 2233344444


Q ss_pred             EEEeeCCcc
Q 040451          158 EIDVRGNRL  166 (566)
Q Consensus       158 ~L~l~~~~~  166 (566)
                      +|++++|++
T Consensus       119 ~L~L~~N~i  127 (198)
T d1m9la_         119 VLYMSNNKI  127 (198)
T ss_dssp             EEEESEEEC
T ss_pred             ccccccchh
Confidence            444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-11  Score=100.11  Aligned_cols=107  Identities=20%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             CCcEEEccCCcccccCchhhhccCCcCcEEEccCC-cceecCCccccCCCCCCEEEccCCcccccCCcCCcCCCCCcEEe
Q 040451          426 NLILLTTRKNKLSGTVPRQLLHIITLPVLLDLSDN-LLNGHFPAEVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG  504 (566)
Q Consensus       426 ~L~~L~l~~~~l~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  504 (566)
                      ..+.++.+++.+. ..|..+..+..+ +.|+++++ .+....+..|..+++|+.|++++|+++...+.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l-~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCcccc-CeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3445566655554 444444444333 55555443 35544444555556666666666666544455555566666666


Q ss_pred             CCCCcccccCCcCCCCCCCCCEEeCCCCccc
Q 040451          505 MQDNSFTRSIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       505 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |++|+++...+..+. ..+|+.|+|++|++.
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCccc
Confidence            666665532222332 234566666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.3e-13  Score=117.01  Aligned_cols=126  Identities=18%  Similarity=0.250  Sum_probs=77.1

Q ss_pred             CCCEEeCCCc--cCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCCCEEE
Q 040451           83 RLQNLTLTNN--YFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSALQEID  160 (566)
Q Consensus        83 ~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~  160 (566)
                      ..+.+++++.  .++ ..+..+..+++|++|++++|.++ .++ .+.++++|++|++++|.++ .++.....+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            4455565544  222 33455677777777777777776 333 4667777777777777776 4554445556677777


Q ss_pred             eeCCcccccCcccccccCccceeeccccccccch--hhhhCCCCCcEEEcccCcCc
Q 040451          161 VRGNRLGGRIPSTISHVRNLISFNVARNQFSGMI--PLIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       161 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~  214 (566)
                      +++|.++..  +.+..+++|+.|++++|.+....  ..+..+++|+.|++++|++.
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777776532  33566677777777777666543  34555566666666555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=96.43  Aligned_cols=88  Identities=23%  Similarity=0.187  Sum_probs=35.1

Q ss_pred             ccCCCCCCEEeCCCc-cCCCCCCcccccCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCCCCCchhhcCCCCC
Q 040451           78 VSNLFRLQNLTLTNN-YFSGKILTDLSHCSNVMKFEASNNKLEAEIPVEIGNLLMLQILNIAENHLKGQLPASIGNLSAL  156 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L  156 (566)
                      +..+++|++|+++++ .++...+.+|..+++|+.|++++|++....+.+|..+++|++|+|++|+++ .++.......+|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccc
Confidence            333444444444333 233222333444444444444444444333334444444444444444444 222222222234


Q ss_pred             CEEEeeCCcc
Q 040451          157 QEIDVRGNRL  166 (566)
Q Consensus       157 ~~L~l~~~~~  166 (566)
                      ++|++++|.+
T Consensus       106 ~~L~L~~Np~  115 (156)
T d2ifga3         106 QELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cccccCCCcc
Confidence            4444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.3e-07  Score=78.19  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=17.7

Q ss_pred             CCCCCCEEecccCcCCCC--CchhhcCCCCCCEEEeeCCccc
Q 040451          128 NLLMLQILNIAENHLKGQ--LPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       128 ~l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~~~~~  167 (566)
                      ++++|++|++++|+++..  ++..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            444555555555554421  1222334444444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.6e-07  Score=77.45  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             ccCCCCCCEEEccCCcccccC--CcCCcCCCCCcEEeCCCCcccccCCcCCCCCCCCCEEeCCCCcccccCCc-------
Q 040451          470 VGNLKNLVSLDISSNMFSGEI--PTTLGGCTSLEYLGMQDNSFTRSIPSTLSSLKSITELDLSRNNLSGHIPQ-------  540 (566)
Q Consensus       470 l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-------  540 (566)
                      +..++.|++|++++|.++...  +..+..+++|+.|++++|.+++..+-.......|+.|++++|++.....+       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            356788888888888887432  24456788888888888888853332222345688888888888754332       


Q ss_pred             cCcCCCCCCeee
Q 040451          541 YLENLSFLSFLN  552 (566)
Q Consensus       541 ~l~~~~~L~~L~  552 (566)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245678888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=3.7e-06  Score=69.42  Aligned_cols=110  Identities=11%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             cCCCCCcEEEcCCC-CCccc----cCccccCCCCCCEEeCCCccCCCCC----CcccccCCCCCEEEccCCccccc----
Q 040451           55 GNLSFPRSINLPNK-SFRGE----IPHEVSNLFRLQNLTLTNNYFSGKI----LTDLSHCSNVMKFEASNNKLEAE----  121 (566)
Q Consensus        55 ~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~----  121 (566)
                      .+.++|++|+|+++ .+...    +..++...+.|++|++++|.+....    ...+...+.|++|++++|.+.+.    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45577788888764 45432    3344566677777777777765322    22344566777777777766532    


Q ss_pred             CCccccCCCCCCEEecccCcCCCC-------CchhhcCCCCCCEEEeeCC
Q 040451          122 IPVEIGNLLMLQILNIAENHLKGQ-------LPASIGNLSALQEIDVRGN  164 (566)
Q Consensus       122 ~~~~~~~l~~L~~L~l~~~~i~~~-------~~~~l~~l~~L~~L~l~~~  164 (566)
                      +..++...+.|++|+++++.+...       +...+...+.|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            223455566677777766544311       2333344566666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=8.4e-06  Score=67.22  Aligned_cols=40  Identities=23%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             hhccCCCCEEecCCccccccc----hhhccCCCCCCEEEccCCc
Q 040451          349 IANLVNLNALGVESNQLAGTI----PLAIGELKSLQMLFLNENF  388 (566)
Q Consensus       349 l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~  388 (566)
                      +...+.|++|++++|.+....    ..++...++|++|++++|.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            344455555555555554321    2234444555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=2.3e-05  Score=64.51  Aligned_cols=110  Identities=10%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             cCCCCCcEEEcCC-CCCccc----cCccccCCCCCCEEeCCCccCCCCC----CcccccCCCCCEEEccCCccccc----
Q 040451           55 GNLSFPRSINLPN-KSFRGE----IPHEVSNLFRLQNLTLTNNYFSGKI----LTDLSHCSNVMKFEASNNKLEAE----  121 (566)
Q Consensus        55 ~~l~~L~~L~L~~-~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~----  121 (566)
                      .+.+.|++|+|++ +.++..    +-.++...++|++|++++|.++...    ...+...+.++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4556777777776 345432    3334556677777777777665332    22344556666666666665431    


Q ss_pred             CCccccCCCCCCEEecc--cCcCCC----CCchhhcCCCCCCEEEeeCC
Q 040451          122 IPVEIGNLLMLQILNIA--ENHLKG----QLPASIGNLSALQEIDVRGN  164 (566)
Q Consensus       122 ~~~~~~~l~~L~~L~l~--~~~i~~----~~~~~l~~l~~L~~L~l~~~  164 (566)
                      +...+...+.|+.++|+  ++.+..    .+...+...++|++|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            22334455556554443  333332    12333344555666655544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=5.7e-05  Score=62.01  Aligned_cols=18  Identities=17%  Similarity=0.206  Sum_probs=8.6

Q ss_pred             hcCCCCCCEEEcccCccc
Q 040451          300 LTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       300 l~~~~~L~~L~l~~~~~~  317 (566)
                      +..+++|++|++++|.++
T Consensus        42 l~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HhcCCccCeeeccCCccc
Confidence            334445555555554443