Citrus Sinensis ID: 040453
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | no | no | 0.272 | 0.306 | 0.267 | 4e-05 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
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Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 341 EPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAI-DNLGQIGGSL-- 397
E S C P G + L+ F+ LF +GG +N+G I ++
Sbjct: 248 EASTDCNCDGP---GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTV 304
Query: 398 -GYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIA 456
S ST VSL + ++ + R+V GF SE + RP++L++I L++ HL+
Sbjct: 305 ENADSPSFSTHVSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLLSVIALVAACIHLM-- 360
Query: 457 FNVPGGLY----------VASIIIGFCFGAQWPLVFAIISELFGLKYYSTLY 498
VP G++ V +I+ GF +G+ + LV I+++++G+ T++
Sbjct: 361 --VPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIW 410
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| 255586799 | 544 | conserved hypothetical protein [Ricinus | 0.915 | 0.920 | 0.815 | 0.0 | |
| 15225053 | 601 | major facilitator protein [Arabidopsis t | 0.939 | 0.855 | 0.737 | 0.0 | |
| 225448934 | 584 | PREDICTED: uncharacterized protein LOC10 | 0.939 | 0.880 | 0.788 | 0.0 | |
| 147841867 | 599 | hypothetical protein VITISV_011832 [Viti | 0.941 | 0.859 | 0.779 | 0.0 | |
| 359481931 | 638 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.788 | 0.736 | 0.0 | |
| 147838379 | 613 | hypothetical protein VITISV_029213 [Viti | 0.928 | 0.828 | 0.729 | 0.0 | |
| 358346702 | 596 | Nitrate and chloride transporter [Medica | 0.926 | 0.850 | 0.740 | 0.0 | |
| 356574173 | 582 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.864 | 0.744 | 0.0 | |
| 356536338 | 586 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.865 | 0.737 | 0.0 | |
| 449449493 | 581 | PREDICTED: uncharacterized membrane prot | 0.904 | 0.851 | 0.749 | 0.0 |
| >gi|255586799|ref|XP_002534014.1| conserved hypothetical protein [Ricinus communis] gi|223525979|gb|EEF28367.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/515 (81%), Positives = 454/515 (88%), Gaps = 14/515 (2%)
Query: 23 ANMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKD 82
A+MK+L IQVITGRWFMVFASFLIM+AAGATYMFSLYSGDIK ALGYDQTTLNLLSFFKD
Sbjct: 15 ADMKNLTIQVITGRWFMVFASFLIMSAAGATYMFSLYSGDIKSALGYDQTTLNLLSFFKD 74
Query: 83 LGANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGA 142
LGANVG+LSGLINE+TPPWVVL +GAVLNFFGYFMIWLAVT+KI VWHMCLYIC+GA
Sbjct: 75 LGANVGVLSGLINEVTPPWVVLSMGAVLNFFGYFMIWLAVTRKITGVHVWHMCLYICIGA 134
Query: 143 NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIG 202
NSQSFANTGSLVTCVKNFPESRG VLGILKGYVGLSGAIITQLY AFYGDD+K+LIL IG
Sbjct: 135 NSQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYHAFYGDDSKALILLIG 194
Query: 203 WLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEY 262
WLPAAISFAFLRTIRI+KVIRQPNELKVFYNFLYISL LAGFLM+IIIVEKQ F R+EY
Sbjct: 195 WLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMIIIIVEKQLQFNRAEY 254
Query: 263 GVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPS-VEIITEKPSQEVHSPSSNLEQT 321
G SAA+V+FLLF PL +V IEE+K+WKSK++ALN+PS + IITEKP Q+ E T
Sbjct: 255 GASAAMVIFLLFLPLAIVCIEEYKIWKSKKVALNDPSPLNIITEKPRQQ--------EIT 306
Query: 322 VSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVG 381
V P S SSS SCW TCF PPDRGEDYTILQALFS+DMLILF ATICGVG
Sbjct: 307 V-----PSSSSIEDNSSSSNVSCWKTCFRPPDRGEDYTILQALFSVDMLILFLATICGVG 361
Query: 382 GTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLML 441
GTLTAIDNLGQIG SLGYPK+SISTFVSLVSIWNYLGRVV+GF SE FL KYKFPRPLML
Sbjct: 362 GTLTAIDNLGQIGTSLGYPKRSISTFVSLVSIWNYLGRVVAGFASEHFLTKYKFPRPLML 421
Query: 442 TIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG 501
T+ILL SC+GHLLIAFNVP GLYVASI+IGFCFGAQWPL+FAIISE+FGLKYYSTLYNFG
Sbjct: 422 TLILLFSCVGHLLIAFNVPSGLYVASIVIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFG 481
Query: 502 GAASPLGSYLLNVRVAGHLYDKEAKRQMAASGITR 536
ASP+GSYLLNVRVAGHLYDKEA +Q+ A G R
Sbjct: 482 SVASPIGSYLLNVRVAGHLYDKEAMKQLTAQGRVR 516
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225053|ref|NP_181454.1| major facilitator protein [Arabidopsis thaliana] gi|16930479|gb|AAL31925.1|AF419593_1 At2g39210/T16B24.15 [Arabidopsis thaliana] gi|3402684|gb|AAC28987.1| nodulin-like protein [Arabidopsis thaliana] gi|330254552|gb|AEC09646.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/540 (73%), Positives = 453/540 (83%), Gaps = 26/540 (4%)
Query: 1 MVVAGPGGGVAGAGGGGASITPANMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYS 60
MV A PGG +MKSL IQ++TGRWFM F S LIM+ AGATYMF +YS
Sbjct: 1 MVAASPGG---------------SMKSLTIQILTGRWFMFFGSLLIMSTAGATYMFGIYS 45
Query: 61 GDIKYALGYDQTTLNLLSFFKDLGANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWL 120
GDIK LGYDQTTLNLLSFFKDLGANVG+L+GL+NE+TPPW +L++GA+LNFFGYFMIWL
Sbjct: 46 GDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWL 105
Query: 121 AVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGA 180
AVT++I++PQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGA
Sbjct: 106 AVTERISKPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGA 165
Query: 181 IITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLA 240
IITQLYRAFYG+DTK LIL IGWLPA +SFAFLRTIRI+KV RQ NELKVFYNFLYISL
Sbjct: 166 IITQLYRAFYGEDTKELILMIGWLPAIVSFAFLRTIRIMKVKRQTNELKVFYNFLYISLG 225
Query: 241 LAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPS- 299
LA FLM++II+ K + FT+SE+G SAA+V+ LL P++VV++EE KLWK KQ+ALN+P+
Sbjct: 226 LATFLMVVIIINKLSGFTQSEFGGSAAVVIVLLLLPIIVVILEEKKLWKEKQVALNDPAP 285
Query: 300 VEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYT 359
+ ++TEKP + SS + E S K PSCWTT F+PP+RG+DYT
Sbjct: 286 INVVTEKPKLD----SSEFKDD------DGEESKEVVEKVKTPSCWTTVFNPPERGDDYT 335
Query: 360 ILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGR 419
ILQALFS+DMLILF ATICGVGGTLTAIDNLGQIG SLGYPK+S+STFVSLVSIWNY GR
Sbjct: 336 ILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWNYYGR 395
Query: 420 VVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWP 479
VVSG VSEIFL KYKFPRPLMLT++LLLSC GHLLIAFNVPGGLYVAS+IIGFCFGAQWP
Sbjct: 396 VVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFGAQWP 455
Query: 480 LVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKG 539
L+FAIISE+FGLKYYSTLYNFG ASP+GSYLLNVRVAG+LYD EA +Q A G TR +G
Sbjct: 456 LLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKTRVEG 515
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448934|ref|XP_002272074.1| PREDICTED: uncharacterized protein LOC100266758 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/520 (78%), Positives = 456/520 (87%), Gaps = 6/520 (1%)
Query: 25 MKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLG 84
MKSL++QVITGRWF+VFASFLIM+AAGATYMF LYSG IK ALGYDQTTLNLLSFFKDLG
Sbjct: 1 MKSLSVQVITGRWFVVFASFLIMSAAGATYMFGLYSGTIKSALGYDQTTLNLLSFFKDLG 60
Query: 85 ANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANS 144
ANVG+LSGLINE+TPPWVVL +GA LNFFGYFMIWLAV++KIA+PQVWHMCLYIC+GANS
Sbjct: 61 ANVGVLSGLINEVTPPWVVLSMGAALNFFGYFMIWLAVSQKIAKPQVWHMCLYICIGANS 120
Query: 145 QSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWL 204
Q+FANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLY AFYG+DTK+LIL I WL
Sbjct: 121 QAFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYHAFYGNDTKALILLIAWL 180
Query: 205 PAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGV 264
PAAISFAFLRTIRI+KVIRQ NELKVFYNFLYISL LAGFLM+IIIVEK+ F++SEYG
Sbjct: 181 PAAISFAFLRTIRIMKVIRQENELKVFYNFLYISLGLAGFLMIIIIVEKELTFSQSEYGG 240
Query: 265 SAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNN-PSVEIITEKPSQEVHSPSSNLEQTVS 323
SAA+V+ LLF PL VV+ EEFKLWK KQ AL P ++II E + E S S LE T +
Sbjct: 241 SAALVLLLLFLPLAVVIQEEFKLWKIKQEALREPPQLKIIAENLNTETSSSSLPLESTAA 300
Query: 324 VAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGT 383
++ PE++ SS KE SC++ F PPDRGEDYTILQALFS+DMLILFF TICGVGGT
Sbjct: 301 TSSLPEQL-----SSQKEVSCFSNVFRPPDRGEDYTILQALFSIDMLILFFTTICGVGGT 355
Query: 384 LTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443
LTAIDNLGQIG SLGYP+KS+STF+SLVSIWNYLGRV +GF SEI L KYKFPRPLMLT+
Sbjct: 356 LTAIDNLGQIGSSLGYPQKSLSTFISLVSIWNYLGRVTAGFGSEIVLDKYKFPRPLMLTL 415
Query: 444 ILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGA 503
ILLLSC+GHLLIAFN+ GLY ASIIIGFCFGAQWPL+FA+ISE+FGLKYYSTLYNFG
Sbjct: 416 ILLLSCVGHLLIAFNIKNGLYFASIIIGFCFGAQWPLLFAVISEIFGLKYYSTLYNFGSV 475
Query: 504 ASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKGGRFD 543
ASP+GSYLLNVRVAG+LYDKE KRQMAA G RK+G D
Sbjct: 476 ASPIGSYLLNVRVAGYLYDKEGKRQMAALGKKRKRGEDLD 515
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841867|emb|CAN66928.1| hypothetical protein VITISV_011832 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/521 (77%), Positives = 454/521 (87%), Gaps = 6/521 (1%)
Query: 24 NMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDL 83
+MKSL++QVITGRWF+VFASFLIM+AAGATYMF LYS IK ALGYDQTTLNLLSFFKDL
Sbjct: 15 DMKSLSVQVITGRWFVVFASFLIMSAAGATYMFGLYSXTIKSALGYDQTTLNLLSFFKDL 74
Query: 84 GANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
GANVG+LSGLINE+TPPWVVL +GA LNFFGYFMIWLAV++KIA+PQVWHMCLYIC+GAN
Sbjct: 75 GANVGVLSGLINEVTPPWVVLSMGAALNFFGYFMIWLAVSQKIAKPQVWHMCLYICIGAN 134
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
SQ+FANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLY AFYG+DTK+LIL I W
Sbjct: 135 SQAFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYHAFYGNDTKALILLIAW 194
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYG 263
LPAAISFAFLRTIRI+KVIRQ NELKVFYNFLYISL LAGFLM+IIIVEK+ F++SEYG
Sbjct: 195 LPAAISFAFLRTIRIMKVIRQENELKVFYNFLYISLGLAGFLMIIIIVEKELTFSQSEYG 254
Query: 264 VSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNN-PSVEIITEKPSQEVHSPSSNLEQTV 322
SAA+V+ LLF PL VV+ EEFKLWK Q AL P ++II E + E S S LE T
Sbjct: 255 GSAALVLLLLFLPLAVVIQEEFKLWKIXQZALREPPQLKIIAENLNTETSSSSLPLESTA 314
Query: 323 SVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGG 382
+ ++ PE++ SS KE SC++ F PPDRGEDYTILQALFS+DM ILFF TICGVGG
Sbjct: 315 ATSSLPEQL-----SSQKEVSCFSNVFRPPDRGEDYTILQALFSIDMXILFFTTICGVGG 369
Query: 383 TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442
TLTAIDNLGQIG SLGYP+KS+STF+SLVSIWNYLGRV +GF SEI L KYKFPRPLMLT
Sbjct: 370 TLTAIDNLGQIGSSLGYPQKSLSTFISLVSIWNYLGRVTAGFGSEIVLDKYKFPRPLMLT 429
Query: 443 IILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502
+ILLLSC+GHLLIAFN+ GLY ASIIIGFCFGAQWP++FA+ISE+FGLKYYSTLYNFG
Sbjct: 430 LILLLSCVGHLLIAFNIKNGLYFASIIIGFCFGAQWPILFAVISEIFGLKYYSTLYNFGA 489
Query: 503 AASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKGGRFD 543
ASP+GSYLL+VRVAG+LYDKE KRQMAA GI RK G D
Sbjct: 490 VASPIGSYLLSVRVAGYLYDKEGKRQMAALGIERKAGEDLD 530
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481931|ref|XP_002268663.2| PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/512 (73%), Positives = 431/512 (84%), Gaps = 9/512 (1%)
Query: 30 IQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGI 89
+QV+ GRWFMVFAS LIM+ AGATYMFSLYSG+IK +LGYDQTTLNLLSFFKDLG NVG+
Sbjct: 20 LQVLVGRWFMVFASLLIMSVAGATYMFSLYSGEIKTSLGYDQTTLNLLSFFKDLGGNVGV 79
Query: 90 LSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFAN 149
LSGLINE+TPPWVVL +GAV+NFFGYFMIWLAVT +IA+PQ+W MCLYIC+GANSQSFAN
Sbjct: 80 LSGLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRIAKPQIWQMCLYICIGANSQSFAN 139
Query: 150 TGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAIS 209
TG+LVTCV+NFPESRG+VLG+LKG+VGLSGAIITQLYRAFYGDD+KSLILFI WLPAA+S
Sbjct: 140 TGALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWLPAAVS 199
Query: 210 FAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIV 269
F FLRTIRI+KV RQ NELKVFY+ LY+SL LAGFLM+III++ + F+R EY SAA+V
Sbjct: 200 FVFLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSGSAAVV 259
Query: 270 MFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPS--QEVHSPSSNLEQTVSVAAA 327
+ LLF PL VV+ EE +WK K+ AL+ V++ITE P + SP +L+Q AA
Sbjct: 260 LILLFLPLAVVIKEEINIWKGKKQALDAAQVKVITENPPAVELASSPVVSLDQLPPPTAA 319
Query: 328 PEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAI 387
PE ++ K SC+ T F PPDRGEDYTILQALFS+DMLILF T CGVGGTLTAI
Sbjct: 320 PE-------NAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGGTLTAI 372
Query: 388 DNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLL 447
DNLGQIG S GY S +TFVSLVSIWNYLGRVVSGF SEIFL +YKFPRPLMLT +LL
Sbjct: 373 DNLGQIGSSQGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLTFVLLF 432
Query: 448 SCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507
SC+GHLLIAF VP LY AS+IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG ASP+
Sbjct: 433 SCVGHLLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGAVASPV 492
Query: 508 GSYLLNVRVAGHLYDKEAKRQMAASGITRKKG 539
GSY+LNV+VAGHLYDKEA +Q+ ASG+TR G
Sbjct: 493 GSYILNVKVAGHLYDKEALKQLEASGVTRVAG 524
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838379|emb|CAN63260.1| hypothetical protein VITISV_029213 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/517 (72%), Positives = 430/517 (83%), Gaps = 9/517 (1%)
Query: 25 MKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLG 84
M+ +QV+ GRWFMVFAS LIM+ AGATYMFSLYSG IK +LGYDQTTLNLLSFFKDLG
Sbjct: 1 MRRFGLQVLVGRWFMVFASLLIMSVAGATYMFSLYSGXIKTSLGYDQTTLNLLSFFKDLG 60
Query: 85 ANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANS 144
NVG+LSGLINE+TPPWVVL +GAV+NFFGYFMIWLAVT +IA+PQ+W MCLYIC+GANS
Sbjct: 61 GNVGVLSGLINEVTPPWVVLCIGAVMNFFGYFMIWLAVTDRIAKPQIWQMCLYICIGANS 120
Query: 145 QSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWL 204
QSFANTG+LVTCV+NFPESRG+VLG+LKG+VGLSGAIITQLYRAFYGDD+KSLILFI WL
Sbjct: 121 QSFANTGALVTCVRNFPESRGIVLGLLKGFVGLSGAIITQLYRAFYGDDSKSLILFIAWL 180
Query: 205 PAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGV 264
P A+SF FLRTIRI+KV RQ NELKVFY+ LY+SL LAGFLM+III++ + F+R EY
Sbjct: 181 PXAVSFVFLRTIRIMKVGRQANELKVFYDLLYMSLGLAGFLMVIIIIQNKFTFSRIEYSG 240
Query: 265 SAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPS--QEVHSPSSNLEQTV 322
SAA+V+ LLF PL VV+ EE +WK K+ AL+ V++ITE P + SP +L Q
Sbjct: 241 SAAVVLILLFLPLAVVIKEEINIWKXKKQALDAAQVKVITENPXAVELASSPVVSLXQLP 300
Query: 323 SVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGG 382
AAPE ++ K SC+ T F PPDRGEDYTILQALFS+DMLILF T CGVGG
Sbjct: 301 PPTAAPE-------NAEKSVSCFKTMFKPPDRGEDYTILQALFSIDMLILFIVTTCGVGG 353
Query: 383 TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442
TLTAIDNLGQIG S GY S +TFVSLVSIWNYLGRVVSGF SEIFL +YKFPRPLMLT
Sbjct: 354 TLTAIDNLGQIGSSXGYTAHSTTTFVSLVSIWNYLGRVVSGFASEIFLTRYKFPRPLMLT 413
Query: 443 IILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502
+LL SC+GHLLIAF VP LY AS+IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG
Sbjct: 414 FVLLFSCVGHLLIAFAVPNSLYFASVIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGA 473
Query: 503 AASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKG 539
ASP+GSY+LNV+VAGHLYDKEA +Q+ ASG+TR G
Sbjct: 474 VASPVGSYILNVKVAGHLYDKEALKQLEASGVTRVAG 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346702|ref|XP_003637404.1| Nitrate and chloride transporter [Medicago truncatula] gi|355503339|gb|AES84542.1| Nitrate and chloride transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/520 (74%), Positives = 438/520 (84%), Gaps = 13/520 (2%)
Query: 24 NMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDL 83
+MKSL +Q ITGRWF++FASFLIMAAAGATYMF LYS DIK LGYDQ+TLNLLSFFKD
Sbjct: 14 DMKSLTVQFITGRWFVIFASFLIMAAAGATYMFGLYSPDIKTTLGYDQSTLNLLSFFKDF 73
Query: 84 GANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
G+NVG+LSGLINE+ PPWVVL +GA+LNFFGYFMIWL+VTKKIARPQVW MCLYIC+GAN
Sbjct: 74 GSNVGVLSGLINELYPPWVVLTIGAILNFFGYFMIWLSVTKKIARPQVWQMCLYICIGAN 133
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
SQSFANTGSLVTCVKNFPESRG VLGILKGYVGLSGAIITQLY A Y DDTK+LILFIGW
Sbjct: 134 SQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYSAIYYDDTKALILFIGW 193
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYG 263
LPAAISFAFLRTIR +K +RQ NELKVFYNFLYISL LAGFL+++II++K+ F++SEYG
Sbjct: 194 LPAAISFAFLRTIRYMKPVRQVNELKVFYNFLYISLGLAGFLLVMIIIQKKVSFSQSEYG 253
Query: 264 VSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVS 323
+SAA+V+FLLF PL VV IEE K+W+SK++AL +PS I + + N +VS
Sbjct: 254 LSAAVVIFLLFLPLAVVFIEENKIWQSKKLALVDPSPVKIVTEGETVTETEKVNSAVSVS 313
Query: 324 VAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGT 383
AP+ K+P W F+PP RGEDYTILQALFS+DMLILF A ICGVGGT
Sbjct: 314 ---APK----------KDPKWWEDVFNPPARGEDYTILQALFSMDMLILFVACICGVGGT 360
Query: 384 LTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443
LTAIDNLGQIG SL YPKKSISTFVSLVSIWNYLGRV SGFVSE FL KY+FPRPLMLT+
Sbjct: 361 LTAIDNLGQIGTSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYRFPRPLMLTM 420
Query: 444 ILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGA 503
L +SC+GHLLIAF+VP GLYVAS+IIGFCFGAQWPL+FAIISELFGLKYY+TLYNFG
Sbjct: 421 TLFVSCVGHLLIAFDVPEGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSV 480
Query: 504 ASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKGGRFD 543
ASPLG Y+LNV++AGHLYDKEAK+Q+ A G R +G +
Sbjct: 481 ASPLGLYVLNVKIAGHLYDKEAKKQLEALGKQRIEGQELN 520
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574173|ref|XP_003555226.1| PREDICTED: uncharacterized protein LOC100819661 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/521 (74%), Positives = 446/521 (85%), Gaps = 18/521 (3%)
Query: 24 NMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDL 83
+MKSL + VITGRWF+VFASFLIMAAAGATYMF LYS DIK LGYDQ+TLNLLSFFKDL
Sbjct: 11 DMKSLTVNVITGRWFVVFASFLIMAAAGATYMFGLYSSDIKTTLGYDQSTLNLLSFFKDL 70
Query: 84 GANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
G+NVGILSGLINE+TPPWVVL +GA+LNFFGYFMIWL+VTKKIA+P+VW MCLYIC+GAN
Sbjct: 71 GSNVGILSGLINELTPPWVVLAIGAILNFFGYFMIWLSVTKKIAKPKVWQMCLYICIGAN 130
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
SQSFANTGSLVTCVKNFPESRG VLGILKGYVGLSGAIITQLY A Y DDT+SLIL IGW
Sbjct: 131 SQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYHAIYYDDTRSLILLIGW 190
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYG 263
LPAAISFAFLRTIR +K +R+PNELKVFYNFLY+SL LAGFLM++IIV+ + DFT+SE+G
Sbjct: 191 LPAAISFAFLRTIRYMKPVRKPNELKVFYNFLYVSLGLAGFLMVMIIVQNKVDFTQSEFG 250
Query: 264 VSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPS-VEIITEKPSQEVHSPSSNLEQTV 322
VSAAI++FLLF PL +V +EE+K+W SK++AL +PS V+I+T+ +V P+
Sbjct: 251 VSAAIMLFLLFLPLTIVSVEEYKVWLSKRLALVDPSPVKIVTD----QVMKPN------- 299
Query: 323 SVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGG 382
E ++G+ S S + W FSPP RGEDYTILQALFS+DMLILF ICGVGG
Sbjct: 300 ------EPTNNGNNSVSDDTKWWENVFSPPARGEDYTILQALFSVDMLILFMTCICGVGG 353
Query: 383 TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442
TLTAIDNLGQIG SL YPKK+ STFVSLVSIWNYLGRV SGFVSE FL KYKFPRPLMLT
Sbjct: 354 TLTAIDNLGQIGTSLRYPKKTRSTFVSLVSIWNYLGRVFSGFVSEYFLQKYKFPRPLMLT 413
Query: 443 IILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502
+ LLLSC+GHLLIAF+VP GLYVAS+IIGFCFGAQWPL+FAIISELFGLKYY+TLYNFG
Sbjct: 414 LTLLLSCVGHLLIAFDVPNGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGS 473
Query: 503 AASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKGGRFD 543
AASPLG Y+LNV++ G+LYDKEAK+Q+AA G+ R +G +
Sbjct: 474 AASPLGLYVLNVKMTGYLYDKEAKKQLAALGLKRIEGQELN 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536338|ref|XP_003536696.1| PREDICTED: uncharacterized protein LOC100776865 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/521 (73%), Positives = 449/521 (86%), Gaps = 14/521 (2%)
Query: 24 NMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDL 83
++KSL++QVITGRWF+VFASFLIMAAAGATYMF LYS DIK LGYDQ+TL+LLSFFKDL
Sbjct: 11 DIKSLSVQVITGRWFVVFASFLIMAAAGATYMFGLYSSDIKTTLGYDQSTLDLLSFFKDL 70
Query: 84 GANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
G+NVGILSGLINE+TPPWVVL +GA+LNFFGYFMIWL+VTKKIA+P+VW MCLYIC+GAN
Sbjct: 71 GSNVGILSGLINELTPPWVVLAIGAILNFFGYFMIWLSVTKKIAKPKVWQMCLYICIGAN 130
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
SQSFANTGSLVTCVKNFPESRG VLGILKGYVGLSGAIITQLY A Y DDT+SLIL IGW
Sbjct: 131 SQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYHAIYYDDTRSLILLIGW 190
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYG 263
LPAAISFAFLRTIR +K +R+PNELKVFYNFLY+SL LAGFLM++IIVE + +FT+SE+G
Sbjct: 191 LPAAISFAFLRTIRYMKPVRKPNELKVFYNFLYVSLGLAGFLMVMIIVENKVNFTQSEFG 250
Query: 264 VSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPS-VEIITEKPSQEVHSPSSNLEQTV 322
VSAAI++FLLF PL +V IEE+K+W+ K++AL +PS V+++T++ E P+ + +
Sbjct: 251 VSAAIMLFLLFLPLTIVSIEEYKVWQGKRLALVDPSPVKVVTDQ--GEKVKPNETINGSN 308
Query: 323 SVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGG 382
+ + + S + W FSPP RGEDYTILQALFS+DMLILF ICGVGG
Sbjct: 309 NNSVS-----------SNDTKWWENVFSPPARGEDYTILQALFSVDMLILFMTCICGVGG 357
Query: 383 TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442
TLTAIDNLGQIG SL YPKK+ STFVSLVSIWNYLGRV SGFVSE FL KYKFPRPLMLT
Sbjct: 358 TLTAIDNLGQIGTSLRYPKKTRSTFVSLVSIWNYLGRVFSGFVSEHFLQKYKFPRPLMLT 417
Query: 443 IILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502
+ LLLSC+GHLLIAF+VP GLYVAS+IIGFCFGAQWPL+FAIISELFGLKYY+TLYNFG
Sbjct: 418 LTLLLSCVGHLLIAFDVPNGLYVASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGS 477
Query: 503 AASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKGGRFD 543
ASPLG Y+LNV++ G+LYDKEAK+Q+AASG+TR++G +
Sbjct: 478 VASPLGLYVLNVKMTGYLYDKEAKKQLAASGLTREEGHELN 518
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449493|ref|XP_004142499.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/519 (74%), Positives = 441/519 (84%), Gaps = 24/519 (4%)
Query: 23 ANMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKD 82
+++ S+ + VITGRWF+VFAS LIMAAAGATYMF LYS DIK LGYDQTTLNLLSFFKD
Sbjct: 11 SDISSIGVHVITGRWFVVFASLLIMAAAGATYMFGLYSSDIKSVLGYDQTTLNLLSFFKD 70
Query: 83 LGANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGA 142
LGANVG+LSGLINE+TPPWVVL +GAVLNFFGYFMIWLAVT++I+ P+VW MCLYIC+GA
Sbjct: 71 LGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTRRISAPKVWQMCLYICIGA 130
Query: 143 NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIG 202
NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQL+ AFYGDDTKSLIL IG
Sbjct: 131 NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGDDTKSLILLIG 190
Query: 203 WLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEY 262
WLPAAISFA LRTIRI+KVIRQPNELKVFYNFLYISLALAGFLM++IIVE + F ++EY
Sbjct: 191 WLPAAISFASLRTIRIMKVIRQPNELKVFYNFLYISLALAGFLMLMIIVESKKQFNQNEY 250
Query: 263 GVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALN--NPSVEIITEKPSQEVHSPSSNLEQ 320
G SAA+V+ LL PL VV+IEE+ LWK K + NPSV+I+TEK + H
Sbjct: 251 GGSAAVVLLLLILPLAVVIIEEYNLWKLKTAVIKSPNPSVQIVTEKLPKTEH-------- 302
Query: 321 TVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGV 380
P++ KEPSCWTT FSPP RGED+TILQALFS+DMLILF A ICGV
Sbjct: 303 -------PKQ-------ERKEPSCWTTIFSPPQRGEDFTILQALFSVDMLILFIAAICGV 348
Query: 381 GGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440
GGTLTAIDNLGQIG +LGYPK+SISTFVSLVSIWNYLGRV SGF+SEI L KYKFPRPL+
Sbjct: 349 GGTLTAIDNLGQIGLALGYPKRSISTFVSLVSIWNYLGRVASGFISEIVLTKYKFPRPLI 408
Query: 441 LTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF 500
L++ LLLSC+GHL+IAF+VP GLYVASI+IGFCFGAQWPL+FAIISELFGLKYYSTLYNF
Sbjct: 409 LSLTLLLSCVGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNF 468
Query: 501 GGAASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKG 539
G ASP+G Y+LNV+VAG+ YD+EA++Q+ A I RK G
Sbjct: 469 GSVASPIGLYVLNVKVAGNFYDREAEKQLEAKRIIRKAG 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 547 | ||||||
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.925 | 0.841 | 0.736 | 2.6e-205 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.903 | 0.856 | 0.639 | 1.5e-170 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.327 | 0.309 | 0.436 | 2.2e-84 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.327 | 0.306 | 0.436 | 1.1e-82 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.438 | 0.456 | 0.360 | 1.9e-81 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.405 | 0.416 | 0.380 | 1.9e-81 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.433 | 0.438 | 0.373 | 1.1e-78 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.433 | 0.438 | 0.373 | 1.1e-78 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.310 | 0.325 | 0.435 | 2.5e-77 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.394 | 0.411 | 0.371 | 5.2e-75 |
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1986 (704.2 bits), Expect = 2.6e-205, P = 2.6e-205
Identities = 381/517 (73%), Positives = 432/517 (83%)
Query: 24 NMKSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDL 83
+MKSL IQ++TGRWFM F S LIM+ AGATYMF +YSGDIK LGYDQTTLNLLSFFKDL
Sbjct: 9 SMKSLTIQILTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDL 68
Query: 84 GANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
GANVG+L+GL+NE+TPPW +L++GA+LNFFGYFMIWLAVT++I++PQVWHMCLYICVGAN
Sbjct: 69 GANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGAN 128
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYG+DTK LIL IGW
Sbjct: 129 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGW 188
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYG 263
LPA +SFAFLRTIRI+KV RQ NELKVFYNFLYISL LA FLM++II+ K + FT+SE+G
Sbjct: 189 LPAIVSFAFLRTIRIMKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFG 248
Query: 264 VSAAIXXXXXXXXXXXXXIEEFKLWKSKQMALNNPS-VEIITEKPSQEVHSPSSNLEQTV 322
SAA+ +EE KLWK KQ+ALN+P+ + ++TEKP + SS +
Sbjct: 249 GSAAVVIVLLLLPIIVVILEEKKLWKEKQVALNDPAPINVVTEKPKLD----SSEFKDD- 303
Query: 323 SVAAAPXXXXXXXXXXXXXXXCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGG 382
CWTT F+PP+RG+DYTILQALFS+DMLILF ATICGVGG
Sbjct: 304 -----DGEESKEVVEKVKTPSCWTTVFNPPERGDDYTILQALFSVDMLILFLATICGVGG 358
Query: 383 TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442
TLTAIDNLGQIG SLGYPK+S+STFVSLVSIWNY GRVVSG VSEIFL KYKFPRPLMLT
Sbjct: 359 TLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWNYYGRVVSGVVSEIFLIKYKFPRPLMLT 418
Query: 443 IILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502
++LLLSC GHLLIAFNVPGGLYVAS+IIGFCFGAQWPL+FAIISE+FGLKYYSTLYNFG
Sbjct: 419 MVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGS 478
Query: 503 AASPLGSYLLNVRVAGHLYDKEAKRQMAASGITRKKG 539
ASP+GSYLLNVRVAG+LYD EA +Q A G TR +G
Sbjct: 479 VASPIGSYLLNVRVAGYLYDVEAGKQYKALGKTRVEG 515
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1658 (588.7 bits), Expect = 1.5e-170, P = 1.5e-170
Identities = 325/508 (63%), Positives = 382/508 (75%)
Query: 30 IQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGI 89
I GRWFMVFASFLIMA AGATY+F YS DIK LGYDQTTLNLL FFKDLGANVG+
Sbjct: 11 IHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGV 70
Query: 90 LSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFAN 149
LSGLI E+TP W VL +G+ +NF GYFMIWL VT K+A+P+VW MCLYIC+GANSQ+FAN
Sbjct: 71 LSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFAN 130
Query: 150 TGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAIS 209
TG+LVTCVKNFPESRGV+LG+LKGYVGLSGAI TQLY A YG D+KSLIL I WLPAA+S
Sbjct: 131 TGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVS 190
Query: 210 FAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIX 269
F+ IR KV+RQ NEL VFY FLYIS+ LA FLM + I EKQ F+++ Y SA I
Sbjct: 191 LVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATIC 250
Query: 270 XXXXXXXXXXXXIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPX 329
+E ++W ++ + PS E+ EKP +E+ +L+Q +
Sbjct: 251 CALLFVPLTVSVKQELEVWNMMKLPIEEPS-EVKVEKPKKEL-----DLDQDKAAKV--- 301
Query: 330 XXXXXXXXXXXXXXCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDN 389
C++T FSPP RGEDYTILQAL S DM+ILF AT CG+G +LTA+DN
Sbjct: 302 -----NGEEKETKSCFSTVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDN 356
Query: 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449
LGQIG SLGYP ++S+FVSLVSIWNY GRV SGFVSE LAKYK PRPLM+T++LLLSC
Sbjct: 357 LGQIGESLGYPNHTVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSC 416
Query: 450 IGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509
GHLLIAF VPG +Y+ASI++GF FGAQ PL+FAIISELFGLKYYSTL+N G ASPLGS
Sbjct: 417 AGHLLIAFPVPGSVYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGS 476
Query: 510 YLLNVRVAGHLYDKEAKRQMAASGITRK 537
Y+LNVRV G LYDKEA +Q+ A G+TRK
Sbjct: 477 YILNVRVTGMLYDKEALKQLTARGLTRK 504
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 79/181 (43%), Positives = 117/181 (64%)
Query: 352 PDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLV 411
P RGED+T+ QAL D ++FF+ + G G LT IDNLGQ+ SLGY + VS++
Sbjct: 347 PHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--LVSMI 404
Query: 412 SIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIG 471
SIWN+LGR+ G+ SE+ + Y +PRP+ + + L+ +GH+ A+ PG +Y+ +++IG
Sbjct: 405 SIWNFLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIG 464
Query: 472 FCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQMAA 531
+GA W +V A SELFGLK + LYNF A+P GS + + +A +YD+EA+RQ
Sbjct: 465 LGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHG 524
Query: 532 S 532
S
Sbjct: 525 S 525
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 79/181 (43%), Positives = 118/181 (65%)
Query: 352 PDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLV 411
P RGED+T+ QAL D ++FF+ + G G LT IDNLGQ+ SLGY + FVS++
Sbjct: 352 PHRGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMI 409
Query: 412 SIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIG 471
SIWN+LGR+ G+ SE+ + Y +PRP+ + + L+ +GH+ A+ PG +++ +++IG
Sbjct: 410 SIWNFLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIG 469
Query: 472 FCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQMAA 531
+GA W +V A SELFGLK + LYNF A+P GS + + +A +YD+EA+RQ
Sbjct: 470 LGYGAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQG 529
Query: 532 S 532
S
Sbjct: 530 S 530
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| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 92/255 (36%), Positives = 147/255 (57%)
Query: 28 LAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV 87
+A +++ +W + AS I +AG +Y F +YS +K YDQ+TL+ +S FKD+G NV
Sbjct: 1 MATEILRTKWMAMTASIWIQCSAGGSYTFGIYSAILKSTQSYDQSTLDTVSVFKDIGGNV 60
Query: 88 GILSGLINEITP--------------PWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133
G+LSGL+ PWVV+++GA+LNF GYF++W +VT I RP V
Sbjct: 61 GVLSGLVYTAATFNRRRRDGRERRGGPWVVILIGAILNFTGYFLMWASVTGLIKRPPVPV 120
Query: 134 MCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193
MCL++ + A S +F NT ++V+ ++NF + G +GI+KG+VGLSGA++ QLY D
Sbjct: 121 MCLFMFIAAQSLTFLNTANVVSSLENFADYGGTAVGIMKGFVGLSGAMLIQLYEVVCPGD 180
Query: 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEK 253
K+ IL + +P+ +S + +R+ K +E K +SL +A +LM+ II++
Sbjct: 181 PKTFILLLAIVPSLLSVLVMPLVRVYKT-STVDEKKHLDGLSTLSLIIAAYLMITIILKS 239
Query: 254 QTDFTRSEYGVSAAI 268
V+ A+
Sbjct: 240 TLSLPSWANAVTLAV 254
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| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 91/239 (38%), Positives = 140/239 (58%)
Query: 30 IQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGI 89
++++ +W + AS I A+GA+Y F +YS +K YDQ+TL+ +S FKD+GAN G+
Sbjct: 1 MEILRTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGV 60
Query: 90 LSGLI------NEITP----------PWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133
SGL+ N + PWVVL +GA+ F GYF+IW +VT I +P V
Sbjct: 61 FSGLLYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPL 120
Query: 134 MCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193
MCL++ + A SQ+F NT ++V+ V+NF + G +GI+KG++GLSGAI+ QLY D
Sbjct: 121 MCLFMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGD 180
Query: 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVE 252
S IL + P +S + +RI + ++ K +SL +A +LM+III++
Sbjct: 181 PASFILLLAVTPTVLSLLVMPLVRIYET-SVADDKKHLNGLSAVSLIIAAYLMIIIILK 238
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| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 90/241 (37%), Positives = 142/241 (58%)
Query: 32 VITGRWFMVFASFLIMAAAGATYMFS-LYSGDIKYALGYDQTTLNLLSFFKDLGANVGIL 90
++ RW + + + + AG Y+F S IK +LGY+Q + LL K+LG +G +
Sbjct: 12 LVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFV 71
Query: 91 SGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANT 150
SG ++E++P WVVL++GA N FGY ++WL VT ++ +W + + I VG N +++ NT
Sbjct: 72 SGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNT 131
Query: 151 GSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210
SLV+C+ NFPESRG V+GILKG+ GLSGAI+TQ+Y F S+IL + P +
Sbjct: 132 ASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVL 191
Query: 211 AFLRTIRILKVIRQPNELKVFYNFLYI---SLALAGFLMMIIIVEKQTDFTRSEYGVSAA 267
A L +R ++ + N FL I + LA +L+ +++++ D T++ S A
Sbjct: 192 ALLFIVRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGA 251
Query: 268 I 268
I
Sbjct: 252 I 252
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| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 90/241 (37%), Positives = 142/241 (58%)
Query: 32 VITGRWFMVFASFLIMAAAGATYMFS-LYSGDIKYALGYDQTTLNLLSFFKDLGANVGIL 90
++ RW + + + + AG Y+F S IK +LGY+Q + LL K+LG +G +
Sbjct: 12 LVNDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFV 71
Query: 91 SGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANT 150
SG ++E++P WVVL++GA N FGY ++WL VT ++ +W + + I VG N +++ NT
Sbjct: 72 SGALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNT 131
Query: 151 GSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210
SLV+C+ NFPESRG V+GILKG+ GLSGAI+TQ+Y F S+IL + P +
Sbjct: 132 ASLVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVL 191
Query: 211 AFLRTIRILKVIRQPNELKVFYNFLYI---SLALAGFLMMIIIVEKQTDFTRSEYGVSAA 267
A L +R ++ + N FL I + LA +L+ +++++ D T++ S A
Sbjct: 192 ALLFIVRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGA 251
Query: 268 I 268
I
Sbjct: 252 I 252
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| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
Identities = 74/170 (43%), Positives = 115/170 (67%)
Query: 356 EDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWN 415
ED IL+A+ +++ +LF A +CG+G ++N+ QIG SL Y +++ VSL SIWN
Sbjct: 302 EDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWN 361
Query: 416 YLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFG 475
+LGR +G+VS+ FL K+ +PRP+ + I L + IGH+++A V G LY S++IG +G
Sbjct: 362 FLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYG 421
Query: 476 AQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525
+QW L+ I SE+FG+++ T+Y A P+GSY+L+V+V G+ YDK A
Sbjct: 422 SQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVA 471
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| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 85/229 (37%), Positives = 131/229 (57%)
Query: 36 RWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLIN 95
+W AS I + +GA+Y F +YS +K + YDQ+TL+ +S +KD+GANVGILSGL
Sbjct: 7 KWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGLFY 66
Query: 96 E------------ITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143
+ PW+V+ +G + F GY IW+A + I RP V MCL++ +
Sbjct: 67 TAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLFMFFAGH 126
Query: 144 SQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGW 203
Q F NT +VT V+NF + G +GI+KGY+GLSGAI+ Q+Y F G D ++ IL +
Sbjct: 127 CQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNYILLLAV 186
Query: 204 LPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVE 252
+P+ + + +R + ++ K ISL + +LM++I+VE
Sbjct: 187 VPSLLILTLMPFVRTYDTVIAGDK-KHLNGLSAISLIIVTYLMVVILVE 234
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT2G39210 | nodulin family protein; nodulin family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nodulin-like (InterPro-IPR010658), Major facilitator superfamily, general substrate transporter (InterPro-IPR016196); BEST Arabidopsis thaliana protein match is- nodulin family protein (TAIR-AT2G28120.1); Has 2013 Blast hits to 1929 proteins in 375 species- Archae - 16; Bacteria - 607; Metazoa - 34; Fungi - 183; Plants - [...] (601 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT2G18690 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (322 aa) | • | 0.686 | |||||||
 | CYP71B23 | CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; pu [...] (501 aa) | • | 0.657 | |||||||
 | AT5G18470 | curculin-like (mannose-binding) lectin family protein; curculin-like (mannose-binding) lectin f [...] (413 aa) | • | 0.653 | |||||||
 | AT5G48380 | leucine-rich repeat family protein / protein kinase family protein; leucine-rich repeat family [...] (620 aa) | • | 0.641 | |||||||
 | AT4G08850 | kinase; kinase; FUNCTIONS IN- kinase activity; INVOLVED IN- protein amino acid phosphorylation; [...] (1045 aa) | • | 0.641 | |||||||
 | AT1G51800 | leucine-rich repeat protein kinase, putative; leucine-rich repeat protein kinase, putative; FUN [...] (894 aa) | • | 0.611 | |||||||
 | ATEXO70B2 | ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding; A member of EXO70 gene fa [...] (599 aa) | • | 0.581 | |||||||
 | AT3G01290 | band 7 family protein; band 7 family protein; INVOLVED IN- N-terminal protein myristoylation; L [...] (285 aa) | • | 0.577 | |||||||
 | DL3220C | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein; zinc finge [...] (376 aa) | • | 0.573 | |||||||
 | AT1G34750 | protein phosphatase 2C, putative / PP2C, putative; protein phosphatase 2C, putative / PP2C, put [...] (282 aa) | • | 0.562 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 547 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 1e-112 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 8e-10 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-112
Identities = 125/248 (50%), Positives = 156/248 (62%), Gaps = 2/248 (0%)
Query: 36 RWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLIN 95
RW + A+ I + AGA Y FSLYS +K +LGY Q LNLL KDLG N G LSGL
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 96 EITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVT 155
E PPWVVL++GA + F GY + WLAVT KI W +CL IC+ NS + NT SLVT
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120
Query: 156 CVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRT 215
C++NFPESRGVVLGILKGY GLS AI TQLY A +G+D SL+L +P +S L
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180
Query: 216 IRI--LKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273
IR KV Q +E VF F +S+ALA +L+ + I+ K D + +EY AI++ LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240
Query: 274 FFPLVVVV 281
PL V +
Sbjct: 241 LVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSI 413
+DYT+ + L + +L+ + L I G SLG + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 414 WNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAF--NVPGGLYVASIII- 470
+N GR G +S+ K R ++I+ +S +G + F + L++A++ +
Sbjct: 252 FNGGGRPFLGALSD------KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 471 GFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509
F +G L +++S++FG + Y F A +
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG 344
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This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGILS---GLINEITPPWVVLVLGAV 109
Y F+L SG ++ Q L+ ++ +G VG I + P + VL
Sbjct: 43 MYAFNLISGAMQARYNLTQRDLSTIT---TVGIAVGYFLLPYSFIYDYLGPRPIFVLSMT 99
Query: 110 LNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLG 169
+ G + L + I V + +Y + + G++VT + FP +RG V+
Sbjct: 100 VFCLGTLLFALTFQEVI-EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVA 158
Query: 170 ILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQP 225
I+K + GL AI+ + AF+ D+T + F+ +SFA + I + +R P
Sbjct: 159 IMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL------MSFALVVGILAIVFMRLP 208
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Length = 591 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLG 418
+ L +L L A + + L LG + L + +G
Sbjct: 194 PAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIG 253
Query: 419 RVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQ 477
R++ G +S+ + R L+ ++L+L+ +G L++ L VA +++GF G
Sbjct: 254 RLLLGRLSDRLGRR---RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLV 310
Query: 478 WPLVFAIISELFGLKY-------YSTLYNFGGAASP 506
+P + A++S+L + Y+T + GGA P
Sbjct: 311 FPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
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Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.93 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.86 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.86 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.85 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.83 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.83 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.83 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.83 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.82 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.82 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.81 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.8 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.8 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.79 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.78 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.78 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.77 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.76 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.73 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.73 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.72 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.7 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.69 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.68 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.67 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.67 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.67 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.67 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.66 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.66 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.64 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.63 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.63 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.63 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.63 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.62 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.62 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.62 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.62 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.61 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.61 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.6 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.59 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.57 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.56 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.55 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.54 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.54 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.54 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.54 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.53 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.53 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.52 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.52 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.51 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.5 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.47 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.43 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.42 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.42 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.42 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.4 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.38 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.38 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.38 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.38 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.37 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.36 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.3 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.29 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.14 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.11 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.1 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.03 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.99 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.95 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.95 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.94 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.93 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.89 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.88 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.73 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.62 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.49 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.44 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.42 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.39 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.38 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.38 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.37 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.36 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.36 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.36 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.34 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.31 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.28 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.26 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.25 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.24 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.23 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.22 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.21 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.17 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.16 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.15 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.14 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.14 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.13 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.12 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.12 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.12 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.11 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.11 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.09 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.09 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.09 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.08 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.08 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.07 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.07 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.06 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.06 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.05 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.05 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.05 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.05 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.03 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.03 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.01 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 97.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.94 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 97.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 97.93 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.87 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.86 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.85 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.84 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.83 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.81 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.8 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.8 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.8 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.79 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.78 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 97.76 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.76 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.73 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.73 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.72 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.7 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.7 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.63 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.63 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.59 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.59 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.53 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.5 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.49 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.45 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.45 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.38 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.35 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.29 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.27 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.25 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.23 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.18 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.17 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.13 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.11 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.82 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.74 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 96.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 96.67 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.67 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.63 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.38 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.34 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 96.34 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.14 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.12 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.01 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 95.98 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 95.9 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.8 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 95.68 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.33 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 95.29 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 94.98 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 94.75 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.74 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 94.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.15 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 93.32 | |
| PRK11462 | 460 | putative transporter; Provisional | 92.94 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 92.56 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 91.55 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 91.48 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 91.32 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 91.01 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 90.76 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 90.19 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 89.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 89.12 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 88.9 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 87.84 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 87.68 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 85.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 85.76 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 85.35 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 84.82 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 84.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 83.64 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 82.15 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=613.34 Aligned_cols=462 Identities=20% Similarity=0.265 Sum_probs=388.6
Q ss_pred hhccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLINEITPPWVVLVLGAVLNF 112 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~ 112 (547)
..+||.+++++++++.++|+.|.|++|+++|++++|+||+|+++++..+...+++.+++|.++||+|||.++++|.++.+
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999876655555667799999999999999999999999
Q ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 113 FGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 113 ~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
+||+++|+++++.+. .++|++|++.++.|+|++++++++++++++|||++||+++|+.+++.|+|++++++++..++.+
T Consensus 103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888774 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhheeeecccccC--------Cccch-----------------hhHHHHHHHHHHHHHHHH
Q 040453 193 DTKSLILFIGWLPAAISFAFLRTIRILKVIRQ--------PNELK-----------------VFYNFLYISLALAGFLMM 247 (547)
Q Consensus 193 ~~~~fllfla~~p~~v~li~~~~ir~~~~~~~--------~~~~~-----------------~f~~~~~~~~~l~v~l~~ 247 (547)
|.+.+++++++.+..+++++..++|.+|++.. ++|.. +|+.++++++++++|+++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~ 261 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL 261 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987631 22233 677778888999999999
Q ss_pred HHHHhhccccCcccchhHHHHHH-HHHhhc-hhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccc
Q 040453 248 IIIVEKQTDFTRSEYGVSAAIVM-FLLFFP-LVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVA 325 (547)
Q Consensus 248 ~~~~~~~~~~s~~~~~~~~~~~i-~ll~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (547)
.++++++.++++..+..++++++ +++++| +.+|++. .+.+++ ++++ +.+++ +..+ +++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~-----~~~~-~~~~~------~~~~----~~~--- 321 (591)
T PTZ00207 262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRP-----HDDS-DGKAK------EHVE----AGE--- 321 (591)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCc-----CCCc-ccccc------cccc----ccc---
Confidence 99999999999999999998887 677778 6777765 111111 0010 00000 0000 000
Q ss_pred cCCcccCCCCCCCCCCCCCcccCC-CCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc-CCCC-c
Q 040453 326 AAPEEVSSGSTSSSKEPSCWTTCF-SPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL-GYPK-K 402 (547)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~-g~~~-~ 402 (547)
|. .+.+++. ..++.+ ..|++++ |++|++++.|||++|+.++|+.|+|++++||++||.+++ |++. .
T Consensus 322 ----~~----~~~~~~~-~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~ 390 (591)
T PTZ00207 322 ----EV----SAAEDKV-VETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDD 390 (591)
T ss_pred ----cc----ccccccc-ccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCc
Confidence 00 0000000 001111 2366665 999999999999999999999999999999999999999 7633 3
Q ss_pred c-hhhHHHHHHHHHhhhhhhcchhhhhhhhhcC----CChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhcc
Q 040453 403 S-ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK----FPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGA 476 (547)
Q Consensus 403 ~-a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~----~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~ 476 (547)
+ ...+|+++|++|++||+++|+++ .+.+|++ +|||.++++..+ +.+++++++...+ ..|+++++++|+|||+
T Consensus 391 ~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~ 468 (591)
T PTZ00207 391 ALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGF 468 (591)
T ss_pred cceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhH
Confidence 2 23389999999999999999997 6666665 999999999999 8888888877777 7899999999999999
Q ss_pred chhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhhcc
Q 040453 477 QWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQM 529 (547)
Q Consensus 477 ~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~~~ 529 (547)
.|++.+++++|+|| ||||+|||+++++.++|+++||++++|++||+|++|++
T Consensus 469 ~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~ 520 (591)
T PTZ00207 469 MAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLG 520 (591)
T ss_pred hHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999 99999999999999999999999999999999999853
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=445.26 Aligned_cols=246 Identities=47% Similarity=0.834 Sum_probs=237.1
Q ss_pred cHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLINEITPPWVVLVLGAVLNFFGY 115 (547)
Q Consensus 36 Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy 115 (547)
||+++++++|+|+++|++|.||+||||||+++|+||+|+|++++++|+|.++|+++|+++||+|||+++++|+++.++||
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCch
Q 040453 116 FMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTK 195 (547)
Q Consensus 116 ~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~ 195 (547)
+++|++++++++++++|++|+|.+++++|++|+|||+++||+||||++||+|+|++|+++|||++||+++|.++|++|++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 99999999999878999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhheeeecccc----cCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 040453 196 SLILFIGWLPAAISFAFLRTIRILKVI----RQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMF 271 (547)
Q Consensus 196 ~fllfla~~p~~v~li~~~~ir~~~~~----~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ 271 (547)
+|++|+++.|..+++++++++|++|++ ++++|+++|..++.+++++++|+++..+++++.++|+..+....+++++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l 240 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL 240 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999864 2366788999888899999999999999999999999999999999999
Q ss_pred HHhhchhhhh
Q 040453 272 LLFFPLVVVV 281 (547)
Q Consensus 272 ll~~p~~~~~ 281 (547)
++++|+.+|+
T Consensus 241 lL~~Pl~i~~ 250 (250)
T PF06813_consen 241 LLLLPLAIPV 250 (250)
T ss_pred HHHhhhhccC
Confidence 9999998863
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=229.90 Aligned_cols=354 Identities=21% Similarity=0.330 Sum_probs=252.3
Q ss_pred ccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
+||+.+++.+..+++.|..|.|+.+.|.+++++|+|.+|+..+.....++.. ..++.|.+.||+|+|.++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 5789999999999999999999999999999999999999998777677765 479999999999999999999999999
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCC
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~ 193 (547)
++.++... ++.|.++....+.|.+.+..+.++.....+|||++||++.++.....++++.+...+...+.+..
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (377)
T TIGR00890 81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLE 153 (377)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc
Confidence 98665432 34565655555677777777778888889999999999999999988888776665444332210
Q ss_pred chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 040453 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273 (547)
Q Consensus 194 ~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll 273 (547)
+-+..|. .. ++..++. .++.+
T Consensus 154 --------------------------------~~~~~f~---~~----~~~~~~~--------------------~~~~~ 174 (377)
T TIGR00890 154 --------------------------------GVPAAFI---YM----GIIFLLV--------------------IVLGA 174 (377)
T ss_pred --------------------------------cHHHHHH---HH----HHHHHHH--------------------HHHHH
Confidence 0011111 10 0000000 00000
Q ss_pred hhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCC
Q 040453 274 FFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPD 353 (547)
Q Consensus 274 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
. .. ++|+++ +++ + + . +.+
T Consensus 175 ~-----~~--------------~~~~~~-~~~---------------~-----~--------------------~-~~~- 192 (377)
T TIGR00890 175 F-----LI--------------GYPPGQ-LIK---------------T-----N--------------------I-EVS- 192 (377)
T ss_pred H-----he--------------ecCchh-ccc---------------c-----C--------------------c-ccc-
Confidence 0 00 011000 000 0 0 0 000
Q ss_pred CCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 354 ~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
.++.+.++.+|++++|++++.+++.......+.+...++.++++.++.+.+...++.++.+.++|+..|+++||++||+
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 271 (377)
T TIGR00890 193 -VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK 271 (377)
T ss_pred -hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0123457889999999999887777666656666677777888887777788899999999999999999999987542
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcc--ch-HHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHH
Q 040453 434 KFPRPLMLTIILLLSCIGHLLIAFNVP--GG-LYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSY 510 (547)
Q Consensus 434 ~~~r~~~l~~~~~~~~i~~lll~~~~~--~~-l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~ 510 (547)
.+.+..++.+++.+++..... .. ++...++.|+++|..+.+.+.+++|.++.++.|+.+|+......+|.
T Consensus 272 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~- 344 (377)
T TIGR00890 272 ------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG- 344 (377)
T ss_pred ------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHH-
Confidence 233444455555544433321 12 23456788999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHhHHH
Q 040453 511 LLNVRVAGHLYDKE 524 (547)
Q Consensus 511 ~l~~~l~G~~yd~~ 524 (547)
.+++.+.|.++|..
T Consensus 345 ~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 345 IFGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHHHHHhhh
Confidence 67888999998864
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=243.01 Aligned_cols=405 Identities=20% Similarity=0.300 Sum_probs=282.9
Q ss_pred cHHHHHHHHHHH-HhhccccccccccHHHHHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIM-AAAGATYMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGANVGILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 36 Rw~~l~a~~~v~-l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
-|.+.+++.+++ .+-|..|.|+++-+.+++.++-+.+|.+++ +....+.-..|++.+.++||+|.|.+.++|+++.++
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 488988887775 677999999999999999999999998886 443333334599999999999999999999999999
Q ss_pred HHHHHHHHHhccccCchHHHHHH-HHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCL-YICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~-~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
|+.+-..+ .++|++++ |++++|+|.++.|..+++...++|++||++|.|+..++-|++..+|+.+.+.+++.
T Consensus 124 g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 124 GLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 98765433 45788775 99999999999999999999999999999999999999999999999999888875
Q ss_pred --CchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHH
Q 040453 193 --DTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVM 270 (547)
Q Consensus 193 --~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i 270 (547)
....++.+.++. +.++++....||++++++.++.+.
T Consensus 197 ~G~r~~~l~~~~~~--l~~~~~~~~~rp~~~~~~~~~~~~---------------------------------------- 234 (509)
T KOG2504|consen 197 YGWRGALLIFGGIS--LNVLVAGALLRPLSPPKKPNEEKD---------------------------------------- 234 (509)
T ss_pred hCcHHHHHHHHHHH--HHHHHHHHHcCCCCcCCCchhhhh----------------------------------------
Confidence 222222222222 223333333443322211000000
Q ss_pred HHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCC
Q 040453 271 FLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFS 350 (547)
Q Consensus 271 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (547)
. +++. ...+..+...+...++ ++. ...+...+..++.+..++..+
T Consensus 235 ----------------------~--~~~~-~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~ 279 (509)
T KOG2504|consen 235 ----------------------L--RNSA-ASVESTPKPVELRISE---RDS-------GLKKLSLSNLATLKRGPDKWR 279 (509)
T ss_pred ----------------------h--cccc-cccccccccccccccc---CCC-------CCCcccccchhhhhhCCcccc
Confidence 0 0000 0000000000000000 000 000000000000000000000
Q ss_pred CCCCCCCCc--HHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhh
Q 040453 351 PPDRGEDYT--ILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI 428 (547)
Q Consensus 351 ~~~~~~d~t--~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~ 428 (547)
....+...+ -.+.+|++.||.+.+...+....-..-...+....+++|+++.+++..++++++.|..||++.|++.|+
T Consensus 280 ~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~ 359 (509)
T KOG2504|consen 280 NSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK 359 (509)
T ss_pred ccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc
Confidence 000111111 258899999999999888887777777778888899999999999999999999999999999999995
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 429 FLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 429 l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
.. +++.+...+..+...++.+....... ..+..-.++.|++.|...++.+.++.|+.|+.++..-||++.+...+
T Consensus 360 ~~----~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi 435 (509)
T KOG2504|consen 360 PG----IRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI 435 (509)
T ss_pred cc----cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence 43 44555556666666666654444433 35666789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcc
Q 040453 508 GSYLLNVRVAGHLYDKEAKRQM 529 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~~~~~~ 529 (547)
+. +.+++++|.+||.......
T Consensus 436 ~~-l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 436 GA-LVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HH-HcCcccceeeeeccCCeee
Confidence 98 7789999999999887654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-20 Score=199.73 Aligned_cols=378 Identities=16% Similarity=0.180 Sum_probs=232.4
Q ss_pred ccHHHHHHHHHHHH-hhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMA-AAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNF 112 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l-~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~ 112 (547)
.||.++.++.+.+. .-+..+.++.+-+++++.+|+|+++...+.+...++. ..+++.|.+.||+|+|.+++++.++..
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 37888887777764 3455678899999999999999999998755444444 458899999999999999999988888
Q ss_pred HHHHHHHHHHhccccCchHHHHHH-HHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 113 FGYFMIWLAVTKKIARPQVWHMCL-YICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 113 ~Gy~l~~l~~~g~i~~~~~~~l~~-~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
++..+...+ .+.|.+++ ...+.|.+.+.....+.....+|||++||++.|+......+++.+...+...+.+
T Consensus 96 ~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 96 LGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 876654222 23444443 3345566666555566666789999999999999998888887655433222211
Q ss_pred CCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 040453 192 DDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMF 271 (547)
Q Consensus 192 ~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ 271 (547)
. .+.+..|. ..+ +..++..+. .
T Consensus 169 ~--------------------------------~gwr~~f~---~~~----~~~~~~~v~------------------~- 190 (455)
T TIGR00892 169 S--------------------------------FGWRGSFL---ILG----GLLLHCCVC------------------G- 190 (455)
T ss_pred H--------------------------------hChHHHHH---HHH----HHHHHHHHH------------------H-
Confidence 0 00111121 110 000000000 0
Q ss_pred HHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCC
Q 040453 272 LLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSP 351 (547)
Q Consensus 272 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 351 (547)
++ ..+.+++ ++ .+++ + .++ ..+ + + . +.++.+ ..+.
T Consensus 191 -~~---~~~~~~~--------~~-~~~~-~-~~~-------~~~-----~-----~---~---~~~~~~-------~~~~ 225 (455)
T TIGR00892 191 -AL---MRPVGPS--------QR-VSKS-K-SKE-------GLP-----P-----D---G---STKKLS-------KKST 225 (455)
T ss_pred -HH---hCCCCcc--------cc-cccc-c-ccc-------cCC-----C-----C---C---cccccc-------ccch
Confidence 00 0000000 00 0000 0 000 000 0 0 0 000000 0000
Q ss_pred CCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhh
Q 040453 352 PDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLA 431 (547)
Q Consensus 352 ~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~ 431 (547)
.++..+.-..+.+|+++||.+.+..++...+..+......++.+++|++..+++...++.++.+.++|+..|+++|+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~- 304 (455)
T TIGR00892 226 AEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW- 304 (455)
T ss_pred hhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 0000111123678999999888876655544445556677788889998888899999999999999999999999631
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHH
Q 040453 432 KYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSY 510 (547)
Q Consensus 432 r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~ 510 (547)
.+..|...+....++..++.++..... ...+++..++.|+++|.......+++.|.++.++.|+.+|++.+...+|.
T Consensus 305 -~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~- 382 (455)
T TIGR00892 305 -IRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV- 382 (455)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH-
Confidence 111122222222233233333332222 23455678899999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHhHHHH
Q 040453 511 LLNVRVAGHLYDKEA 525 (547)
Q Consensus 511 ~l~~~l~G~~yd~~~ 525 (547)
.+++.++|.++|...
T Consensus 383 ~igp~i~G~l~~~~g 397 (455)
T TIGR00892 383 LIGPPLAGRLVDATK 397 (455)
T ss_pred HccccceeeeehhcC
Confidence 668888998888653
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=195.58 Aligned_cols=377 Identities=15% Similarity=0.108 Sum_probs=216.1
Q ss_pred ccHHHHHHHHHHHHhh-ccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAA-GATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNF 112 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~-Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~ 112 (547)
.||..+...++...+. -..+.++.+.|++++++|+|..|..++.+...++.. ..++.|.+.||+|+|.++.++.++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3545444433333332 334678899999999999999999997666666654 58999999999999999999999988
Q ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 113 FGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 113 ~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
++..++.+. .++|.+++...+.+.+.+..+.+......+|||+ +||++.|+.....++++.+-..+...+.+
T Consensus 100 ~~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 100 IINILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887655332 3456555544445556666666777778899985 69999999988888887665544333321
Q ss_pred CCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 040453 192 DDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMF 271 (547)
Q Consensus 192 ~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ 271 (547)
. .+-+..|. .. ++..++... +
T Consensus 173 ~--------------------------------~gw~~~f~---~~----~i~~~~~~~-------------------~- 193 (434)
T PRK11663 173 H--------------------------------YGWRYGMM---IA----GIIAIVVGL-------------------F- 193 (434)
T ss_pred c--------------------------------ccHHHHHH---HH----HHHHHHHHH-------------------H-
Confidence 1 01111111 10 000000000 0
Q ss_pred HHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCC
Q 040453 272 LLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSP 351 (547)
Q Consensus 272 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 351 (547)
+...++++ +++. ..++ ..+.+ + + . + +.++ + +. +.
T Consensus 194 -----~~~~~~~~-----p~~~--~~~~-~~~~~---------~---~-~-----~--~~~~-------~-----~~-~~ 227 (434)
T PRK11663 194 -----LCWRLRDK-----PQAM--GLPS-VGEWR---------H---D-A-----L--ELAQ-------Q-----QE-GA 227 (434)
T ss_pred -----HHHHcCCC-----Hhhc--CCCC-ccccc---------c---c-c-----c--ccch-------h-----cc-cc
Confidence 00000100 0000 0000 00000 0 0 0 0 0000 0 00 00
Q ss_pred CCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhh
Q 040453 352 PDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFL 430 (547)
Q Consensus 352 ~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~ 430 (547)
+.+.++.-....+|++.+|.+.+.+++....-..+.+...++. ++.|++..+++...+++.+++.+||+..|+++||+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~ 307 (434)
T PRK11663 228 GLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF 307 (434)
T ss_pred CCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 0000011112356889999988766654333323334455555 457888888888999999999999999999999986
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHH
Q 040453 431 AKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSY 510 (547)
Q Consensus 431 ~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~ 510 (547)
++.|.+......+..++..+..+++.......+++...++|+...+...+....++|.|+.++.|+--|++....-+|.
T Consensus 308 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~- 386 (434)
T PRK11663 308 NGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA- 386 (434)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH-
Confidence 5433222222222222222222111111111122233444443333344566788999999999999999988888887
Q ss_pred HHHHHHHHHHhHHH
Q 040453 511 LLNVRVAGHLYDKE 524 (547)
Q Consensus 511 ~l~~~l~G~~yd~~ 524 (547)
.++|.++|.+.|+.
T Consensus 387 ~~~p~~~g~l~~~~ 400 (434)
T PRK11663 387 ALSGYPLAKVLEIW 400 (434)
T ss_pred HHhcccHHHHHHhc
Confidence 77888999999863
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=195.02 Aligned_cols=394 Identities=14% Similarity=0.035 Sum_probs=226.6
Q ss_pred ccchHHHHHHh-hhccHHHHHHHHHHHHh-hccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccC
Q 040453 22 PANMKSLAIQV-ITGRWFMVFASFLIMAA-AGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEIT 98 (547)
Q Consensus 22 ~~~~~~~~~~~-~~~Rw~~l~a~~~v~l~-~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~ 98 (547)
|.-.+...|.. .+++|.++....+.-+. --.-+.+++..|++++++|+|.+|+.++.++..++.. ..++.|.+.||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~ 91 (467)
T PRK09556 12 LDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK 91 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc
Confidence 33335555544 44455555444444333 2235678888999999999999999998766666664 478999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhh
Q 040453 99 PPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGL 177 (547)
Q Consensus 99 Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GL 177 (547)
|+|.++.++.++.+++.+++.+...+.. .+++.+.++-++.|.+.+....++.+...+|||+ +||++.|+......+
T Consensus 92 g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l 169 (467)
T PRK09556 92 NTKQFLPFLLILSAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL 169 (467)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence 9999998888887777665544333322 4567777666677777777777888888899975 799999998887778
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040453 178 SGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDF 257 (547)
Q Consensus 178 Sa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~ 257 (547)
++++-..+...... ..+ . .+.+..|. .. ++..++..+..
T Consensus 170 G~~l~~~i~~~~~~---------------------~~~----~----~~~~~~f~---~~----g~~~~~~~i~~----- 208 (467)
T PRK09556 170 GGAGAGGVALWGAN---------------------YFF----D----GHVIGMFI---FP----SIIALIIGFIG----- 208 (467)
T ss_pred hhhHHHHHHHHHHH---------------------hhc----c----CcchhHHH---HH----HHHHHHHHHHH-----
Confidence 77654322211100 000 0 00011111 10 00000000000
Q ss_pred CcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCC
Q 040453 258 TRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTS 337 (547)
Q Consensus 258 s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 337 (547)
+ ...+. +|+.....+ . ++..+ + +.+++
T Consensus 209 --------------~------~~~~~-------------~p~~~~~~~---~-~~~~~-----------~--~~~~~--- 235 (467)
T PRK09556 209 --------------L------RYGSD-------------SPEELGWGK---A-EEIFG-----------E--PISEE--- 235 (467)
T ss_pred --------------H------HhCCC-------------ChhhcCCCC---h-hhccc-----------C--ccchh---
Confidence 0 00000 000000000 0 00000 0 00000
Q ss_pred CCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHh
Q 040453 338 SSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNY 416 (547)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~ 416 (547)
++ ..++++....+.-.++.+|++.+|.+++..++.......+.+......+ .+|.+..+++...++..+++.
T Consensus 236 -~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ 308 (467)
T PRK09556 236 -DK------ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGAL 308 (467)
T ss_pred -hh------ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 00 0000000000111234789999999998877765554444455565554 478888888888999999999
Q ss_pred hhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchh
Q 040453 417 LGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYS 495 (547)
Q Consensus 417 ~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g 495 (547)
+|++..|+++||+++|+ ...............+++..... ..+++...+.|+...+........+.|.+..++.|
T Consensus 309 ig~~~~G~lsDr~g~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g 384 (467)
T PRK09556 309 VGSLLWGWLSDLANGRR----ALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG 384 (467)
T ss_pred HHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH
Confidence 99999999999997652 22211111111111112222112 12334556677544444444456778999999999
Q ss_pred hhcchhccchhh-HHHHHHHHHHHHHhHH
Q 040453 496 TLYNFGGAASPL-GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 496 ~nyg~~~~~~~~-gs~~l~~~l~G~~yd~ 523 (547)
+-.|++.....+ |. .+++.+.|.++|.
T Consensus 385 ~a~gi~~~~g~l~g~-~~~~~~~G~i~~~ 412 (467)
T PRK09556 385 VANGIKGTFAYLFGD-SFAKVGLGMIADP 412 (467)
T ss_pred HHHHHHHHHHHHHhH-HHHhhhHHHHhcc
Confidence 999999666554 54 6688999999993
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=182.08 Aligned_cols=358 Identities=16% Similarity=0.145 Sum_probs=220.7
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
....|+...|.+++++|+|..|...+.....++.. ..++.|.+.||+|+|.++.++.++..++..++..+ .+
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TS 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hh
Confidence 34577888899999999999999998777677765 47999999999999999999999998888776543 24
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAIS 209 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~ 209 (547)
.|.+.+...+.|.+.+..+.+......+++|+ +||.+.++......+++.+-..+........
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------- 146 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---------------- 146 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc----------------
Confidence 56666666677788888888888888999985 6999999988887777655542222211100
Q ss_pred HHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhh
Q 040453 210 FAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWK 289 (547)
Q Consensus 210 li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~ 289 (547)
.+.+..|. .. ++..++..+ + . . ...+++
T Consensus 147 ---------------~~~~~~~~---~~----~~~~~~~~~-------------------~-~-~----~~~~~~----- 174 (379)
T TIGR00881 147 ---------------YSWHWVFI---VP----GIIAIIVSL-------------------I-C-F----LLLRDS----- 174 (379)
T ss_pred ---------------CCchhHHH---HH----HHHHHHHHH-------------------H-H-h----eeeCCC-----
Confidence 00011111 10 000000000 0 0 0 000000
Q ss_pred hhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHH
Q 040453 290 SKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDM 369 (547)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~F 369 (547)
++++ ..++ .++ . ++++.+++++ +. ++..+..+...++.+|++.+
T Consensus 175 ~~~~--~~~~---~~~-------~-------------~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~ 218 (379)
T TIGR00881 175 PQSC--GLPP---AEE-------M-------------PNEEPDGDAE----------KK-EEELTKKQIFLQYVLLNKVL 218 (379)
T ss_pred cccc--ccCc---ccc-------C-------------cccccccccc----------cc-cccccchHHHHHHHHhcchH
Confidence 0000 0000 000 0 0000000000 00 00001112345778999999
Q ss_pred HHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHH
Q 040453 370 LILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLS 448 (547)
Q Consensus 370 wll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~ 448 (547)
|.+.+..++.......+.....+..+ ..|.++.+.+...++..+.+.+||++.|+++||..+|++. ..........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~---~~~~~~~~~~ 295 (379)
T TIGR00881 219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG---PLAVFFMALI 295 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch---HHHHHHHHHH
Confidence 99988777665544444444555554 4688878888889999999999999999999987544322 1222222222
Q ss_pred HHHHHHHHhhc-c--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 449 CIGHLLIAFNV-P--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 449 ~i~~lll~~~~-~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
.++.+.+.... . ....+...+.|+..++.......++.|.+..++-|+.+|+..+...+|. .+++.+.|.+.|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 296 IVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG-ILAGLPLGYLADGF 373 (379)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh-hhhhhhHHHHHHhh
Confidence 22222222111 1 1233455677776666777778899999999999999999988888887 57888999999864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=187.04 Aligned_cols=389 Identities=14% Similarity=0.066 Sum_probs=218.7
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHH
Q 040453 26 KSLAIQVITGRWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVV 103 (547)
Q Consensus 26 ~~~~~~~~~~Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~ 103 (547)
++..+-.++++|.++.+..+...+.... +.++...|.++++ |+|.++..++.+...++.. ..++.|.+.||+|+|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~ 95 (452)
T PRK11273 17 AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 95 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh
Confidence 3344444556787665555544443332 4578888999988 9999999997666566654 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHH
Q 040453 104 LVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAII 182 (547)
Q Consensus 104 l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~ 182 (547)
++++.++..++.+.+.+... . ..+.+.+.....+.|.+.+..+........++||+ +||++.|+......+++.+.
T Consensus 96 l~~~~~~~~i~~~~~~~~~~--~-~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 172 (452)
T PRK11273 96 LPAGLILAAAVMLFMGFVPW--A-TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLP 172 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhc--c-cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHH
Confidence 99999988888776543311 1 12344444444455566666666666778899975 69999999877767766554
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccc
Q 040453 183 TQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEY 262 (547)
Q Consensus 183 s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~ 262 (547)
..+....... . .+.+..|. ..+ +..++..
T Consensus 173 ~~l~~~~~~~-----------------------~--------~gw~~~f~---i~~----~~~~~~~------------- 201 (452)
T PRK11273 173 PLLFLLGMAW-----------------------F--------NDWHAALY---MPA----FAAILVA------------- 201 (452)
T ss_pred HHHHHHHHHH-----------------------h--------ccHHHHHH---HHH----HHHHHHH-------------
Confidence 4322110000 0 00001111 100 0000000
Q ss_pred hhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCC
Q 040453 263 GVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEP 342 (547)
Q Consensus 263 ~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 342 (547)
.+.+++ .+++ |+....++ ++ +.++ +. +++.++
T Consensus 202 ------~l~~~~------~~~~-------------~~~~~~~~---------~~--~~~~----~~-------~~~~~~- 233 (452)
T PRK11273 202 ------LFAFAM------MRDT-------------PQSCGLPP---------IE--EYKN----DY-------PDDYNE- 233 (452)
T ss_pred ------HHHHHH------ccCC-------------HhhcCCCC---------hh--hhhh----cc-------cccccc-
Confidence 000000 0100 00000000 00 0000 00 000000
Q ss_pred CCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhh
Q 040453 343 SCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVV 421 (547)
Q Consensus 343 ~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~ 421 (547)
++.++.+. .+.-....+|++.+|.+++..++....-..+.+......++ .|++..+++....+..+++..|++.
T Consensus 234 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~ 308 (452)
T PRK11273 234 ---KHEQELTA--KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 308 (452)
T ss_pred ---ccCCCccH--HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 01112236789999999888776654444455566777776 6787777778888999999999999
Q ss_pred cchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhc
Q 040453 422 SGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP---GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLY 498 (547)
Q Consensus 422 ~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~---~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~ny 498 (547)
.|+++||+.++++.. .......+..++.+++..... ....+...++|....+........+.|.+..+..|+..
T Consensus 309 ~G~l~dr~~~~r~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 385 (452)
T PRK11273 309 CGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 385 (452)
T ss_pred HHHHHHHHccCCcch---HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHH
Confidence 999999996543221 112222222333322222111 12233445556654444444556788999999999999
Q ss_pred chhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 499 NFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 499 g~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
|+......+|..+.++.+.|.++|+-.
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 998765556654557889999998753
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=183.09 Aligned_cols=360 Identities=14% Similarity=0.043 Sum_probs=222.1
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQV 131 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~ 131 (547)
.+.++...|.+++++|+|..+...+.....++.. ..++.|.+.||+|+|.++.++.++..++..++.+. .++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 82 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAY 82 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCH
Confidence 4677888899999999999999998766667765 47899999999999999999999988887766433 245
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
|.+.+..++.|.+.+...++......+++|+ +||.+.++......++..+-..+...+.+..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------- 145 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF----------------- 145 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-----------------
Confidence 6666666677777788887888888999985 7999999998888888766554433322210
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
+.+..|. .. ++..++.. ++.++ ..++
T Consensus 146 ---------------~~~~~~~---~~----~~~~~~~~--------------------~~~~~-----~~~~------- 171 (399)
T TIGR00893 146 ---------------SWQWAFI---IE----GVLGIIWG--------------------VLWLK-----FIPD------- 171 (399)
T ss_pred ---------------CchHHHH---HH----HHHHHHHH--------------------HHhhh-----eecC-------
Confidence 0011111 00 00000000 00000 0000
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
++.+.... . ++ ++. + +.+....+ . ++ +++.+....+.++.+|++++|
T Consensus 172 -------~~~~~~~~--~------~~---~~~----~--~~~~~~~~----~---~~--~~~~~~~~~~~~~~~~~~~~~ 218 (399)
T TIGR00893 172 -------PPQKAKWL--T------EE---EKY----I--VVGGLLAE----Q---QG--KGPSTPKKYQIKELLKDRRVW 218 (399)
T ss_pred -------CCCccccC--C------HH---HHh----h--cchhhccc----c---cc--ccccCCCccchHHHhcCHHHH
Confidence 00000000 0 00 000 0 00000000 0 00 000111123568889999999
Q ss_pred HHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
.+++..++.......+.....+..++ .+.+..+.+...++..+.+.++++..|+++||++||++...............
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV 298 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 99998888777766666667777664 67777778888899999999999999999999987742111000111111111
Q ss_pred HHHHHHHhh--ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 450 IGHLLIAFN--VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 450 i~~lll~~~--~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
.....+... ......+...+++....+.......+++|.+..++.|+.+|+......+|. .+++.+.|.++|..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 299 LSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG-IVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh-hhhhHHhhhhccCC
Confidence 111111111 112223333333333333788889999999999999999999988888887 66888999999864
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=193.36 Aligned_cols=352 Identities=13% Similarity=0.098 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHH
Q 040453 37 WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGY 115 (547)
Q Consensus 37 w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy 115 (547)
|..........+..-..|.++.+.|.+++++|+|.+|..++.....++..+ .++.|.+.||+|+|.++.++.++..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~ 115 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV 115 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 444444444444444568899999999999999999998877666677665 5999999999999999999988888876
Q ss_pred HHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCc
Q 040453 116 FMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDT 194 (547)
Q Consensus 116 ~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~ 194 (547)
.+..++ + +++.+.+..++.|.+.+.. ..+.....+|||+ +||++.|+..+...+++.+-..+...
T Consensus 116 ~~~~~~-----~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~------ 181 (476)
T PLN00028 116 FCMSLV-----S--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL------ 181 (476)
T ss_pred HHHHHh-----c--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 544322 2 3344433333344444322 2334446688974 79999999876555555433322111
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHh
Q 040453 195 KSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLF 274 (547)
Q Consensus 195 ~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~ 274 (547)
+...+... . .. ...+-+..|. +. ++..++.. ++.++
T Consensus 182 ------------i~~~~~~~--~-~~--~~~gWr~~f~---i~----g~l~l~~~--------------------l~~~~ 217 (476)
T PLN00028 182 ------------VFPLIKDA--G-AP--SFTAWRIAFF---VP----GLLHIIMG--------------------ILVLT 217 (476)
T ss_pred ------------HHHHHHhc--C-Cc--chhhhHHHHH---HH----HHHHHHHH--------------------HHHHH
Confidence 10000000 0 00 0001111111 11 10000000 00000
Q ss_pred hchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCC
Q 040453 275 FPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDR 354 (547)
Q Consensus 275 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 354 (547)
.+ +++| +...+ + .+ + + . +. ++..
T Consensus 218 ~~-------------------~~~p-~~~~~---------~----~~-----~--~----~-----------~~-~~~~- 240 (476)
T PLN00028 218 LG-------------------QDLP-DGNYR---------E----LK-----K--S----G-----------TM-PKDS- 240 (476)
T ss_pred Hc-------------------CcCC-CCchh---------h----HH-----h--c----C-----------cc-cccc-
Confidence 00 0111 00000 0 00 0 0 0 00 0000
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 355 GEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 355 ~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
....+++.++++++|++++.+++..+....+.+...+...+ .|.+..+++...++..+++.+||+..|+++||++||+
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~ 319 (476)
T PLN00028 241 -FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF 319 (476)
T ss_pred -HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 01246788999999999988776666655555556666554 6888888889999999999999999999999999875
Q ss_pred CC-ChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHh----hhccchhhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 434 KF-PRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGF----CFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 434 ~~-~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~----~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
.. .|.+++.+..++..+..+++..... ....+..++.++ +.|..+++.| + ++.|+.|+++|++..+..+
T Consensus 320 ~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~g~~~g~~~~~g~l 394 (476)
T PLN00028 320 GMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSRRSLGVISGLTGAGGNV 394 (476)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cChhhchhhhhhhhccccH
Confidence 43 2444444444444443333322211 112222333344 4555555544 3 3568999999999887767
Q ss_pred HH
Q 040453 508 GS 509 (547)
Q Consensus 508 gs 509 (547)
|+
T Consensus 395 g~ 396 (476)
T PLN00028 395 GA 396 (476)
T ss_pred HH
Confidence 76
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=183.76 Aligned_cols=360 Identities=13% Similarity=0.103 Sum_probs=231.6
Q ss_pred HhhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHH
Q 040453 31 QVITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGA 108 (547)
Q Consensus 31 ~~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~ 108 (547)
+..+++|..+..+.++..+.+. .+.++...|++++++|+|.+|...+.....++..+ .++.|.+.||+|+|.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3455789999999888888776 58899999999999999999999987777777754 799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHH
Q 040453 109 VLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 109 vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
++..++..+..+. .+++.+.+..++.|.+.+..+.+......++|| ++||++.++...+..+++.+-..+..
T Consensus 88 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 88 ALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876554322 245555566666777777777777778889997 57999999988777777655443221
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHH
Q 040453 188 AFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAA 267 (547)
Q Consensus 188 ~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~ 267 (547)
...+. .+.+..|. ..++. .++..
T Consensus 161 ~~~~~--------------------------------~~~~~~~~---~~~~~----~~~~~------------------ 183 (406)
T PRK11551 161 LAAGD--------------------------------AAWRHIFY---VGGVG----PLLLV------------------ 183 (406)
T ss_pred HHccc--------------------------------cCHHHHHH---HHHHH----HHHHH------------------
Confidence 11110 00011111 10000 00000
Q ss_pred HHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCccc
Q 040453 268 IVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTT 347 (547)
Q Consensus 268 ~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 347 (547)
.+.... .+ +++ +..++ ++ .++ +
T Consensus 184 -~~~~~~------l~--------------~~~-~~~~~---------~~---~~~----~-------------------- 205 (406)
T PRK11551 184 -PLLMRW------LP--------------ESR-AFAQA---------AG---AGK----Q-------------------- 205 (406)
T ss_pred -HHHHHh------CC--------------CCh-hHHhc---------cC---cch----h--------------------
Confidence 000000 00 000 00000 00 000 0
Q ss_pred CCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhh
Q 040453 348 CFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSE 427 (547)
Q Consensus 348 ~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD 427 (547)
. ++.. ....+-.+.++.+.+++.+++.......+.+...++.++.|.+..+.+...++.++.+.+||+..|+++|
T Consensus 206 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 280 (406)
T PRK11551 206 R-APVL----RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD 280 (406)
T ss_pred h-hhhH----HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0000001123344444444444334444555677788888988888889999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 428 IFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 428 ~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
|+++| | .+.+..+...++.+++..... ..+++..++.|++.++.....++++.|.+..++.|+..|+......
T Consensus 281 r~g~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 354 (406)
T PRK11551 281 RLRPR----R--VVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR 354 (406)
T ss_pred HHhHH----H--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh
Confidence 98754 2 222233333444433332222 2345567888999888889999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 040453 507 LGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~~ 524 (547)
+|. .+++.++|.++|+.
T Consensus 355 ~g~-~~g~~~~g~l~~~~ 371 (406)
T PRK11551 355 LGS-MAGPLLAGQLLALG 371 (406)
T ss_pred HHH-HHHhhhHhhhhccC
Confidence 887 67889999999864
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=180.99 Aligned_cols=341 Identities=12% Similarity=0.097 Sum_probs=221.0
Q ss_pred HHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHH
Q 040453 43 SFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWL 120 (547)
Q Consensus 43 ~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l 120 (547)
..++.+.... .+..+...|++++++|+|++|..++.+...++.. ..++.|++.||+|+|.++.+|.++..+|..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~ 93 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL 93 (393)
T ss_pred HHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 3678999999999999999999997665555554 5799999999999999999999999999876532
Q ss_pred HHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHH
Q 040453 121 AVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILF 200 (547)
Q Consensus 121 ~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllf 200 (547)
. ++++.+.+.-++.|.|.+..+........++||++||.+.|+..+...+++.+-..+...+.+.
T Consensus 94 -----a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-------- 158 (393)
T PRK09705 94 -----Y--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQH-------- 158 (393)
T ss_pred -----C--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 2 3455555667778888888777777777889999999999998776655554444222211100
Q ss_pred HHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhh
Q 040453 201 IGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVV 280 (547)
Q Consensus 201 la~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~ 280 (547)
. .+.+..+. ...+. .++ .++. . ..
T Consensus 159 ------------------~-----~~w~~~~~---~~~~~----~~~---------------------~~~~-~----~~ 182 (393)
T PRK09705 159 ------------------S-----ETWYQTLA---WWALP----AVV---------------------ALFA-W----WW 182 (393)
T ss_pred ------------------c-----CCHHHHHH---HHHHH----HHH---------------------HHHH-H----HH
Confidence 0 00011111 10000 000 0000 0 00
Q ss_pred hhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcH
Q 040453 281 VIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTI 360 (547)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~ 360 (547)
.. + ++|+ ++ + +++ .+.
T Consensus 183 ~~-------~-----~~~~----~~---------------------~----------------------~~~-----~~~ 198 (393)
T PRK09705 183 QS-------A-----REVA----SS---------------------H----------------------KTT-----TTP 198 (393)
T ss_pred Hh-------c-----CCCc----cc---------------------c----------------------CCC-----cCC
Confidence 00 0 0010 00 0 000 011
Q ss_pred HHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHH
Q 040453 361 LQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~ 440 (547)
++.+|++++|.+.+.+++.......+.+...++.+++|.+..+++...+++++++.+||+..|+++||+++| + .
T Consensus 199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~----~--~ 272 (393)
T PRK09705 199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR----K--L 272 (393)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch----H--H
Confidence 345678899988877766555555666678888888999888889999999999999999999999987654 2 2
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhc-CCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 441 LTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFG-LKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 441 l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG-~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
..+...+.+++.+++...+.....+...+.|++.|..+......+.+.+. .++-|+.+|++.....++. .+++.+.|.
T Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~gp~~~G~ 351 (393)
T PRK09705 273 LMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA-GLAPWFSGV 351 (393)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 23333444445443332222222223456789999888888878888886 4577899998877666666 567889999
Q ss_pred HhHHHH
Q 040453 520 LYDKEA 525 (547)
Q Consensus 520 ~yd~~~ 525 (547)
+.|+-.
T Consensus 352 l~~~~g 357 (393)
T PRK09705 352 LRSISG 357 (393)
T ss_pred HHHHhC
Confidence 999754
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=178.15 Aligned_cols=379 Identities=14% Similarity=0.105 Sum_probs=223.6
Q ss_pred hhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHH
Q 040453 32 VITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAV 109 (547)
Q Consensus 32 ~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~v 109 (547)
..+++|..+.+..+..++.+. .+.++...+++++++|+|++|...+.....++.. ..++.|.+.||+|+|.+++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456789988888888877776 4778899999999999999999987665566654 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHH
Q 040453 110 LNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRA 188 (547)
Q Consensus 110 l~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~ 188 (547)
+..++..+.... .+++.++....+.|.+.+..+.++.....+++| ++||.+.++.....+++..+-..+...
T Consensus 86 ~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 86 LFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887655322 346666666777788888888888888889997 579999999988888877665544333
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 040453 189 FYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAI 268 (547)
Q Consensus 189 ~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~ 268 (547)
+.+.. +. ..+..+.+. ++..++.
T Consensus 159 l~~~~--------------------------------~~--~w~~~f~~~---~~~~~~~-------------------- 181 (405)
T TIGR00891 159 VVPVW--------------------------------GD--GWRALFFIS---ILPIIFA-------------------- 181 (405)
T ss_pred HHHhc--------------------------------Cc--cHHHHHHHH---HHHHHHH--------------------
Confidence 32210 00 001000000 0000000
Q ss_pred HHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccC
Q 040453 269 VMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTC 348 (547)
Q Consensus 269 ~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (547)
.+ . ....+++. .+++++ +. .++ .++ +.. +..+.++ .
T Consensus 182 ~~---~---~~~~~~~~-~~~~~~----~~----~~~--------~~~--~~~--------~~~~~~~-----------~ 217 (405)
T TIGR00891 182 LW---L---RKNIPEAE-DWKEKH----AG----KAL--------VRT--MVD--------ILYGGEH-----------R 217 (405)
T ss_pred HH---H---HHhCCCCh-hHHHHh----hh----hhh--------hhh--HHH--------HHhccch-----------h
Confidence 00 0 00000000 000000 00 000 000 000 0000000 0
Q ss_pred CCCCCCCCCCcHHHhhccHHHHH----HHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcc
Q 040453 349 FSPPDRGEDYTILQALFSLDMLI----LFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSG 423 (547)
Q Consensus 349 ~~~~~~~~d~t~~q~l~t~~Fwl----l~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G 423 (547)
.+...+..-...++ +..+.|. +.+...+.......+.+......+ +.|.+..+.+...++..+...+|++..|
T Consensus 218 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 295 (405)
T TIGR00891 218 IANIVMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFG 295 (405)
T ss_pred hhhhhhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000001111 1122332 222222111111222233344443 5788888888889999999999999999
Q ss_pred hhhhhhhhhcCCChhHHHHHHHHHHHHH-HHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh
Q 040453 424 FVSEIFLAKYKFPRPLMLTIILLLSCIG-HLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG 501 (547)
Q Consensus 424 ~lsD~l~~r~~~~r~~~l~~~~~~~~i~-~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~ 501 (547)
+++||++||+ .. .+..++..+. ..++..... ..+.+...+.|+..++.+.+.+..+.|.+..++.|+.+|+.
T Consensus 296 ~l~dr~g~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (405)
T TIGR00891 296 FLGDWLGRRK----AY--VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369 (405)
T ss_pred HHHHHhCchh----hh--HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHH
Confidence 9999987652 12 2222222111 112222222 22334557788888889999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHhHHHHhh
Q 040453 502 GAASPLGSYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 502 ~~~~~~gs~~l~~~l~G~~yd~~~~~ 527 (547)
.....++. .+++.++|.++|+....
T Consensus 370 ~~~~~~g~-~~g~~~~g~l~~~~g~~ 394 (405)
T TIGR00891 370 YQLGNLGG-ALAPIIGALLAQRLDEY 394 (405)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcccc
Confidence 77777777 67889999999986544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=182.74 Aligned_cols=387 Identities=12% Similarity=0.038 Sum_probs=220.0
Q ss_pred hccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHH
Q 040453 34 TGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 34 ~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
|.||..+....+.-.+... .+..+.-.|.+++++|+|.+|+.++..+..++.. ..++.|.+.||+|+|.++.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 3356665555554444333 5677778899999999999999998766666654 4799999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.++..+..+. .+.+.+++.-.+.|.+.+..+.+......+|||. +||.+.|+.....+++..+-..+...+.
T Consensus 84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765432 2345555555666777777666677778899985 6999999998888887755443332222
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHH
Q 040453 191 GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVM 270 (547)
Q Consensus 191 ~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i 270 (547)
+.+ ......+-+..|. ..++ .. ++...+..
T Consensus 157 ~~~--------------------------~~~~~~gwr~~f~---~~~~-~~--l~~~~~~~------------------ 186 (412)
T TIGR02332 157 ALD--------------------------GLMALKGWQWLFL---LEGF-PS--VILGVMTW------------------ 186 (412)
T ss_pred hCC--------------------------CCCCccchhHHHH---HHHH-HH--HHHHHHHh------------------
Confidence 100 0000001111111 1000 00 00000000
Q ss_pred HHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCC
Q 040453 271 FLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFS 350 (547)
Q Consensus 271 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (547)
..+++..++ .+ -.+ +.+++ +..+. .+.++.+.+++ ++ ..++
T Consensus 187 --------~~~~~~p~~-----~~--~l~-~~~~~-------------~~~~~--~~~~~~~~~~~--~~------~~~~ 227 (412)
T TIGR02332 187 --------FWLDDSPDK-----AK--WLD-EEDKK-------------ALKEM--IDNDQLTLEQP--EG------AFAH 227 (412)
T ss_pred --------hccCCCccc-----CC--CCC-HHHHH-------------HHHHH--HHhcccccccc--cc------cccc
Confidence 000000000 00 000 00000 00000 00000000000 00 0000
Q ss_pred CCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc--CCCCcchhhHHHHHHHHHhhhhhhcchhhhh
Q 040453 351 PPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL--GYPKKSISTFVSLVSIWNYLGRVVSGFVSEI 428 (547)
Q Consensus 351 ~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~--g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~ 428 (547)
++. .....+..++++.+|.+.+.+++....-..+.+...+++++. +.+..+++...++..+++.+||+..|+++||
T Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr 305 (412)
T TIGR02332 228 AAM--PQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR 305 (412)
T ss_pred ccc--cHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 000 001123335678999999888877665556777889999875 4566667788899999999999999999998
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 429 FLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYV-ASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 429 l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~-~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
+.+| | .......++..++.++..........+ +..+.+++......+......|.|+.|+.|+-+|++.....+
T Consensus 306 ~~~r----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~ 380 (412)
T TIGR02332 306 LKER----K-HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI 380 (412)
T ss_pred cCcc----H-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh
Confidence 8654 2 122222333333333222221122222 222223333223334445557889999999999999888888
Q ss_pred HHHHHHHHHHHHHhHHH
Q 040453 508 GSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~ 524 (547)
|. .++|.+.|.+.|+.
T Consensus 381 g~-~~~p~~~g~i~~~~ 396 (412)
T TIGR02332 381 GS-ALSPFLIGILKDAT 396 (412)
T ss_pred hh-hhhhhhcccccccC
Confidence 87 67888999998864
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=172.80 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=212.6
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
..++..-|++++++|+|.++..++.....++.. ..++.|++.||+|+|.++.+|.++..++..+. . . ++.+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~--~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----A--PGTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----h--ccHH
Confidence 467778889999999999999998766666665 48999999999999999999998887776543 1 1 2344
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAF 212 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~ 212 (547)
.+.+..++.|.|.+....+......++||++||.+.++.....+++..+-..+...+.+...
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~------------------ 150 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG------------------ 150 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------
Confidence 44445555666666655555556678999999999999887777776554432221111000
Q ss_pred hheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhh
Q 040453 213 LRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQ 292 (547)
Q Consensus 213 ~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~ 292 (547)
..-+..|. .. ++..++ .+ ++..| + .
T Consensus 151 ------------~~w~~~f~---~~----~~~~~~---------------------~~-~~~~~------~------~-- 175 (355)
T TIGR00896 151 ------------GHWQQALA---WW----ALPALL---------------------AL-LAWIP------Q------V-- 175 (355)
T ss_pred ------------hhHHHHHH---HH----HHHHHH---------------------HH-HHHhh------h------h--
Confidence 00000111 00 000000 00 00000 0 0
Q ss_pred hccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHH
Q 040453 293 MALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLIL 372 (547)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll 372 (547)
.+++ ++ + + +.+ +.+.++.+|++++|.+
T Consensus 176 ---~~~~----~~---------------~-----~----------------------~~~----~~~~~~~~~~~~~~~~ 202 (355)
T TIGR00896 176 ---RRRV----AA---------------N-----Q----------------------TTT----RLTPVRIWRSPLAWQV 202 (355)
T ss_pred ---cccc----CC---------------C-----C----------------------CCC----CCCCchhhcCHhHHHH
Confidence 0000 00 0 0 000 1123567899999988
Q ss_pred HHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 040453 373 FFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGH 452 (547)
Q Consensus 373 ~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ 452 (547)
.+.+.+....-..+.+...++.++.|.+..+.+...++..+...+||+..|+++||+.+| | ..+.+..++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~----~-~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 203 TVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ----R-GIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc----h-HHHHHHHHHHHHHH
Confidence 776666545444555667778888898888888999999999999999999999988433 2 23334444555555
Q ss_pred HHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcC-CchhhhcchhccchhhHHHHHHHHHHHHHhHHHHh
Q 040453 453 LLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGL-KYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAK 526 (547)
Q Consensus 453 lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~-k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~ 526 (547)
+.+.........+..++.|+++|..+.+..+.+.+.+.. ++.++.++++.....++. .++|.+.|.++|+...
T Consensus 278 ~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 278 CGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLA-ALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 444333222233356788999999998888877766654 556888888765555555 5678899999998754
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-18 Score=176.97 Aligned_cols=377 Identities=16% Similarity=0.164 Sum_probs=223.8
Q ss_pred hhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVL 110 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl 110 (547)
.+++|..+..+.+..++.+. .+.++.+.|.+.+++|+|..+...+.....++..+ .++.|.+.||+|+|..+.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34567777777777766665 46788899999999999999998876666666654 78999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 111 NFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 111 ~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
..+++.++.+. .+.+.+.+..++.|.+.+..+.+......+++|+ +||.+.++......++..+-..+...+
T Consensus 92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 88887765432 2455555666677788888887888888899985 699999998888777775555433332
Q ss_pred hCCC-chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 040453 190 YGDD-TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAI 268 (547)
Q Consensus 190 f~~~-~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~ 268 (547)
.+.. ....+++.++.+....++...++
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 192 (398)
T TIGR00895 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFL---------------------------------------------------- 192 (398)
T ss_pred hhcccceeehhhhhhHHHHHHHHHHHhC----------------------------------------------------
Confidence 2210 00001111111111100000000
Q ss_pred HHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccC
Q 040453 269 VMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTC 348 (547)
Q Consensus 269 ~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (547)
|- +++....++++++.+.. +...+ + . . ++.++.. + + +.
T Consensus 193 -------~~----~~~~~~~~~~~~~~~~~--~~~~~----------~----~-----~-~~~~~~~---~-~-----~~ 230 (398)
T TIGR00895 193 -------PE----SIDFLVSKRPETVRRIV--NAIAP----------Q----M-----Q-AEAQSAL---P-E-----QK 230 (398)
T ss_pred -------CC----CChHHHhcCHHHHHHHH--HHHHH----------h----c-----c-ccccccc---c-c-----cc
Confidence 00 00000000000000000 00000 0 0 0 0000000 0 0 00
Q ss_pred CCCCCCCCCCcHHH----hhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcch
Q 040453 349 FSPPDRGEDYTILQ----ALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGF 424 (547)
Q Consensus 349 ~~~~~~~~d~t~~q----~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~ 424 (547)
.+.+. ....++ ..+.+.+|.+++.+++.......+.+....+.++.|.+..+.+...++.+++..+|++..|+
T Consensus 231 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (398)
T TIGR00895 231 ATQGT---KRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307 (398)
T ss_pred cccch---hhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 011112 11234556665555544333333333445666678888888888899999999999999999
Q ss_pred hhhhhhhhcCCChhHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhcc
Q 040453 425 VSEIFLAKYKFPRPLMLTIILLLSCIGHLLIA-FNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGA 503 (547)
Q Consensus 425 lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~-~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~ 503 (547)
++||+++| ..+....+..+...++.. ......+++..++.|+++|.......++++|.+..++-|+-+|+...
T Consensus 308 l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 381 (398)
T TIGR00895 308 LADRLGPR------VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIG 381 (398)
T ss_pred HHhhcchH------HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99988643 122222222222222222 12223456678899999999999999999999999999999999888
Q ss_pred chhhHHHHHHHHHHHHH
Q 040453 504 ASPLGSYLLNVRVAGHL 520 (547)
Q Consensus 504 ~~~~gs~~l~~~l~G~~ 520 (547)
...+|. .+++.+.|.+
T Consensus 382 ~~~~g~-~~g~~~~G~l 397 (398)
T TIGR00895 382 IGRLGA-IIGPILAGYL 397 (398)
T ss_pred HHHHHH-HHHHHhHHhc
Confidence 777877 6678787764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=172.48 Aligned_cols=350 Identities=18% Similarity=0.208 Sum_probs=222.5
Q ss_pred hccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHH
Q 040453 34 TGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 34 ~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
.|||.....+.+...+.|. .+.++...|++++++|+|.+|+..+.....++..+ .++.|++.||+|+|.++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677776666666655555 68899999999999999999999976666666654 689999999999999999998888
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.++..+.... .+++.+.....+.|.+.+..+..+.....++||+ +||.+.++....+++++.+...+...+.
T Consensus 83 ~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 83 ILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887655321 2455555544555666666666677777899986 6899999887777787765553333222
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHH
Q 040453 191 GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVM 270 (547)
Q Consensus 191 ~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i 270 (547)
... .+.+..|. .. ++..++..+
T Consensus 156 ~~~-------------------------------~gw~~~f~---~~----~~~~~~~~~-------------------- 177 (394)
T PRK03699 156 ARS-------------------------------IEWYWVYA---CI----GLVYVAIFI-------------------- 177 (394)
T ss_pred hcc-------------------------------ccHHHHHH---HH----HHHHHHHHH--------------------
Confidence 110 00011111 10 000000000
Q ss_pred HHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCC
Q 040453 271 FLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFS 350 (547)
Q Consensus 271 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (547)
+ . ... +.|+++ ++ + ++ + +
T Consensus 178 -~-~----~~~--------------~~p~~~--~~---------~-----~~----~----------------------~ 195 (394)
T PRK03699 178 -L-T----LFS--------------EFPALG--KH---------A-----PK----A----------------------D 195 (394)
T ss_pred -H-H----Hhc--------------CCcccc--cc---------C-----cc----c----------------------c
Confidence 0 0 000 001000 00 0 00 0 0
Q ss_pred CCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhh
Q 040453 351 PPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIF 429 (547)
Q Consensus 351 ~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l 429 (547)
++..+. ..++.+|++.+..++.......+.+-...+.++ .|++..+++..++++.+++.+||+..|+++||+
T Consensus 196 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 268 (394)
T PRK03699 196 KPVAKE-------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF 268 (394)
T ss_pred Cccccc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 124678888877766554444445556667754 688888889999999999999999999999988
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhH
Q 040453 430 LAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLG 508 (547)
Q Consensus 430 ~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~g 508 (547)
.+| | .+....++.++..+++.... ...+.+...+.|++.++.+.+..+...|.. .++.++.+|.+.....+|
T Consensus 269 ~~~----~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g 341 (394)
T PRK03699 269 DLQ----R--ILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFILTCGTIG 341 (394)
T ss_pred chh----h--HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHhhhHH
Confidence 654 2 22223333333333333222 233445678889999988888888888765 466788888888877888
Q ss_pred HHHHHHHHHHHHhHHHH
Q 040453 509 SYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 509 s~~l~~~l~G~~yd~~~ 525 (547)
. .++|.+.|.++|...
T Consensus 342 ~-~i~p~~~G~l~~~~g 357 (394)
T PRK03699 342 T-MLTFVVTSPIVAHFG 357 (394)
T ss_pred H-HHHHHHHHHHHHHhC
Confidence 7 678899999999643
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-17 Score=176.31 Aligned_cols=384 Identities=15% Similarity=0.082 Sum_probs=214.0
Q ss_pred HHhhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHH
Q 040453 30 IQVITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLG 107 (547)
Q Consensus 30 ~~~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG 107 (547)
++..+.||..+.+..+...+... ...++...|.+++ +|+|++|..++.....++.. ..++.|.+.||+|+|..+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~ 97 (438)
T TIGR00712 19 PTYKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHH
Confidence 34445578777666665544443 3456666788876 59999999998666666664 479999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHH
Q 040453 108 AVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLY 186 (547)
Q Consensus 108 ~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~ 186 (547)
.++.+++.+++... ... ..+.+.++...++.+.+.+..+.+......++|| ++||++.|+......+++.+...+.
T Consensus 98 ~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 98 LILSAAVMLLMGFV--PWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHHHHHHhcc--ccc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 99988887664322 111 1234555544555566666666667777789996 5799999998877777776655433
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHH
Q 040453 187 RAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSA 266 (547)
Q Consensus 187 ~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~ 266 (547)
....... .+-+..|. .. ++..++..+
T Consensus 175 ~~~~~~~-------------------------------~~w~~~f~---~~----~~~~~i~~~---------------- 200 (438)
T TIGR00712 175 LLGMAWF-------------------------------NDWHAALY---FP----AICAIIVAL---------------- 200 (438)
T ss_pred HHHHHHh-------------------------------hhhHHHHH---HH----HHHHHHHHH----------------
Confidence 2211100 00011111 10 011000000
Q ss_pred HHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcc
Q 040453 267 AIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWT 346 (547)
Q Consensus 267 ~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 346 (547)
+ . ...++++ +++. ..+ + .++ .+. +.++.. . +
T Consensus 201 ---~-~-----~~~~~~~-----~~~~--~~~--~-~~~--------~~~---------------~~~~~~-~------~ 231 (438)
T TIGR00712 201 ---F-A-----FAMMRDT-----PQSC--GLP--P-IEE--------YRN---------------DYPDDY-N------E 231 (438)
T ss_pred ---H-H-----HHhccCC-----HHhc--CCC--C-chh--------ccc---------------cccccc-c------c
Confidence 0 0 0001100 0000 000 0 000 000 000000 0 0
Q ss_pred cCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchh
Q 040453 347 TCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFV 425 (547)
Q Consensus 347 ~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~l 425 (547)
+. +.+.+.++...++.+|++.+|.+.+..++....-..+.....++.++ .|.++.+++...+++++.+.+|++..|++
T Consensus 232 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 310 (438)
T TIGR00712 232 KA-EQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 310 (438)
T ss_pred cc-ccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000011112347899999999876655544433455667777776 58887788888899999999999999999
Q ss_pred hhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc
Q 040453 426 SEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP---GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502 (547)
Q Consensus 426 sD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~---~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~ 502 (547)
+||+.++++. ...........++.+++..... ...++...+.|+...+........+.|.++.++.|+..|+..
T Consensus 311 ~dr~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 387 (438)
T TIGR00712 311 SDKVFKGNRG---ATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 387 (438)
T ss_pred HHHhccCccc---HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhc
Confidence 9998654332 1111111222222222221111 112223344454432222223356789999999999999986
Q ss_pred cchhhHHHHHHHHHHHHHhHHH
Q 040453 503 AASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 503 ~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
...-++...+++.+.|.+.|.-
T Consensus 388 ~~~~~gg~~~gp~l~G~l~~~~ 409 (438)
T TIGR00712 388 LFGYLGGSVAASAIVGYTVDFF 409 (438)
T ss_pred hHHHhhhhhhcchhHHHHHHhc
Confidence 6555554456778888888853
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=171.73 Aligned_cols=360 Identities=14% Similarity=0.102 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 36 Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
||..+....+..+..+.. +..+...+.+++++|+|..|..++.....++..+ .++.|.+.||+|+|.++.++.++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344455555555665553 4456666788899999999999887776777654 78999999999999999999999999
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
+..+..+. .+.+.+.+.-.+.|.+.+..+++......++||+ +||++.++.....+++..+...+...+.+.
T Consensus 96 ~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 96 GTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 88765432 2455566666677777777777777888899985 599999999888888876654333222110
Q ss_pred CchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHH
Q 040453 193 DTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFL 272 (547)
Q Consensus 193 ~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~l 272 (547)
.+-+..|. +.... . ++.+
T Consensus 169 --------------------------------~~w~~~f~----i~~~~---~-----------------------~~~~ 186 (426)
T PRK12307 169 --------------------------------YGWRAAFF----VGLLP---V-----------------------LLVI 186 (426)
T ss_pred --------------------------------CCHHHHHH----HHHHH---H-----------------------HHHH
Confidence 00011111 00000 0 0000
Q ss_pred HhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCC
Q 040453 273 LFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPP 352 (547)
Q Consensus 273 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 352 (547)
+ .+.. .|+.+..++ + +.+ + + ++ ++ . ..
T Consensus 187 -~------~~~~------------~p~~~~~~~---------~----~~~----~--~-----~~--~~------~--~~ 213 (426)
T PRK12307 187 -Y------IRAR------------APESKEWEE---------A----KLS----G--K-----GK--HS------Q--SA 213 (426)
T ss_pred -H------HHHH------------CCCChHHHH---------h----hhh----c--c-----cc--cc------c--cc
Confidence 0 0000 000000000 0 000 0 0 00 00 0 00
Q ss_pred CCCCCCcHHHhhccHHHHHHHHHHHH---hhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhh
Q 040453 353 DRGEDYTILQALFSLDMLILFFATIC---GVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIF 429 (547)
Q Consensus 353 ~~~~d~t~~q~l~t~~Fwll~~~~~~---~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l 429 (547)
.+....+.++.+|++++|.....+.+ ..+....+.+...+..++.|.++.+.+...++..+++.+||+.+|+++||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 293 (426)
T PRK12307 214 WSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI 293 (426)
T ss_pred hhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00012256788999999876543322 222222344566777778888777778888999999999999999999998
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhh--hccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 430 LAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFC--FGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 430 ~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~--~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
++|+ .+....++.++..+++.... .....+...+.|+. ..+...+.|.++.|.|+.++.|+..|++.....
T Consensus 294 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 367 (426)
T PRK12307 294 GLKK------TFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA 367 (426)
T ss_pred ccHH------HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh
Confidence 7542 22333333333333322212 22233344445543 345567899999999999999999999877777
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 040453 507 LGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~~ 524 (547)
++. .+++.+.|.+.|+-
T Consensus 368 ~~~-~~gp~~~g~l~~~~ 384 (426)
T PRK12307 368 TSG-TFNSMAATWLGITM 384 (426)
T ss_pred HHH-HHHHHHHHHHHHcc
Confidence 776 56888888888754
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=167.03 Aligned_cols=347 Identities=14% Similarity=0.058 Sum_probs=211.2
Q ss_pred hccHHHHHHHHHHHHhh-ccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHH
Q 040453 34 TGRWFMVFASFLIMAAA-GATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 34 ~~Rw~~l~a~~~v~l~~-Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
++||..+..-.+.+... -..|.-+..-|++++++|+|++|+.++.....++.. ..++.|.+.||+|+|.++.++.++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34676544444444443 334555556789999999999999997655555544 5789999999999999999999998
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.++..+.... .++|.+.+.-++.|.+.+...+.+.....+++| ++||++.|+.....+++..+-..+...+.
T Consensus 85 ~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 85 IASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8887655332 345655555555566666666666667788887 58999999988777776544332221110
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHH
Q 040453 191 GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVM 270 (547)
Q Consensus 191 ~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i 270 (547)
+. .+-+..|. ..+ ++.++.. +
T Consensus 158 ~~--------------------------------~gw~~~f~---~~~---~~~~l~~---------------------~ 178 (390)
T PRK03545 158 QY--------------------------------LGWRTTFL---AIG---GGALITL---------------------L 178 (390)
T ss_pred HH--------------------------------hcHHHHHH---HHH---HHHHHHH---------------------H
Confidence 00 00011111 100 0000000 0
Q ss_pred HHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCC
Q 040453 271 FLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFS 350 (547)
Q Consensus 271 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (547)
+.. .. .|+. .++ + +
T Consensus 179 -~~~----~~----------------~~~~--~~~---------------------~----------------------~ 192 (390)
T PRK03545 179 -LLI----KL----------------LPLL--PSE---------------------H----------------------S 192 (390)
T ss_pred -HHH----Hh----------------CCCC--CCC---------------------C----------------------c
Confidence 000 00 0100 000 0 0
Q ss_pred CCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhh
Q 040453 351 PPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIF 429 (547)
Q Consensus 351 ~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l 429 (547)
++ ..+.++.+|++++|.+++..++......+..+...++.++ .|.+..+++...+++++.+.+|++..|+++||.
T Consensus 193 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 268 (390)
T PRK03545 193 GS----LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH 268 (390)
T ss_pred ch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 0134678999999987766555443333334455566665 588887888889999999999999999999976
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHH-Hhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 430 LAKYKFPRPLMLTIILLLSCIGHLLI-AFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 430 ~~r~~~~r~~~l~~~~~~~~i~~lll-~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
.+| ... +...+..++..++ .... ...+++..++.|++++.........+.+... ++.++-.|+.....-+
T Consensus 269 ~~~------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 340 (390)
T PRK03545 269 PSG------FLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNI 340 (390)
T ss_pred chh------HHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 432 222 2222233333222 2222 2334557788899988877777788888775 6778777766555555
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 040453 508 GSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~~ 525 (547)
|. .+++.+.|.++|+-.
T Consensus 341 g~-~~G~~~~G~~~~~~g 357 (390)
T PRK03545 341 GI-GAGALLGNQVSLHLG 357 (390)
T ss_pred HH-HHHHHHHHHHHhccC
Confidence 54 557788999998653
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=162.07 Aligned_cols=358 Identities=14% Similarity=0.068 Sum_probs=213.4
Q ss_pred hhccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
.++.+...++.+..+...+..|. |-+++.+++|+|.+|+.++.+...++. ...++.|.+.||+|+|.++.++.++.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~ 88 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQG---WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLW 88 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHH---hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34455666666666777676554 335566789999999999755555655 45899999999999999999999998
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcC-CCCCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNF-PESRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nF-P~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.++..+.- ..+.. ..+.+.+.....+.|.|.+....+......+++ |++||++.|+..+..+++..+++.+.....
T Consensus 89 ~~~~~~~~--~~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 89 CVGHAAFI--VFGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHHH--HHhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87754331 11221 124555555555556666554445555566776 568999999988887777544443322221
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHH
Q 040453 191 GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVM 270 (547)
Q Consensus 191 ~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i 270 (547)
-+.. +.+..+.+... +.++..+..
T Consensus 166 ~~~~-------------------------------g~~~~~~~~~~-------~~~~~~~~~------------------ 189 (402)
T TIGR00897 166 IPAF-------------------------------GEMNTLWSALA-------FVLTGGVIA------------------ 189 (402)
T ss_pred cccc-------------------------------chHHHHHHHHH-------HHHHHHHHH------------------
Confidence 1100 00111110000 000000000
Q ss_pred HHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCC
Q 040453 271 FLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFS 350 (547)
Q Consensus 271 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (547)
++. . .+++ +++++ + + + . +
T Consensus 190 -~~~------~--------------~~~~-~~~~~---------~------~----~--------------------~-~ 207 (402)
T TIGR00897 190 -LFS------N--------------KDIF-TPQHM---------Q------T----R--------------------E-K 207 (402)
T ss_pred -Hhc------c--------------CCCC-Ccccc---------c------C----C--------------------c-c
Confidence 000 0 0000 00000 0 0 0 0 0
Q ss_pred CCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhh
Q 040453 351 PPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFL 430 (547)
Q Consensus 351 ~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~ 430 (547)
..+. ...+++.+|++++|.+.+..++....-....+....+.+++|.+..+.....++..+.+.+|++..|+++||++
T Consensus 208 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~ 285 (402)
T TIGR00897 208 FSEL--GKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG 285 (402)
T ss_pred hhhH--HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0000 01245688999999988776665444444455666677888988888888889999999999999999999887
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHH---HHh--hcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 431 AKYKFPRPLMLTIILLLSCIGHLL---IAF--NVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 431 ~r~~~~r~~~l~~~~~~~~i~~ll---l~~--~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
+|+ +. .....+.+.+..+. ... ... ...++..++.|++.++.... ...++|.+ .++.|+.+|+....
T Consensus 286 ~~~----~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~ 358 (402)
T TIGR00897 286 WMN----TV-RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLS 358 (402)
T ss_pred chh----HH-HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHH
Confidence 542 11 11111222222111 111 111 22345678889888876543 45667764 68999999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHH
Q 040453 505 SPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 505 ~~~gs~~l~~~l~G~~yd~~ 524 (547)
..++. .++|.+.|.++|..
T Consensus 359 ~~lg~-~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 359 AGLSA-FLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHH-HHHHHHHHHHHhhc
Confidence 98887 67899999999974
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=162.06 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=92.2
Q ss_pred hccccccccccHH-HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040453 50 AGATYMFSLYSGD-IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIA 127 (547)
Q Consensus 50 ~Gt~Y~fSiys~~-L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~ 127 (547)
...-|.++.+.|+ +++++|+|..+..++.....++.. ..++.|.+.||+|+|.+++++.++..++..++... +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~ 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----V 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----h
Confidence 4445789999996 999999999999998777677765 57999999999999999999999999997766433 1
Q ss_pred CchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHH
Q 040453 128 RPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGA 180 (547)
Q Consensus 128 ~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~ 180 (547)
.++|.+....++.|.+.+. +..+.....++|| ++||.+.++..+...++..
T Consensus 89 -~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 140 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGG 140 (366)
T ss_pred -hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH
Confidence 0455554444444455443 3566677889997 5799999987755445443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-16 Score=166.60 Aligned_cols=382 Identities=13% Similarity=0.123 Sum_probs=216.8
Q ss_pred cccchHHHHHHhhhccHHHHHHHHHH-HHhhccccccccccHHHHH-HhCCChhhhHHHHH-HHHhhhhhhchhhhhhcc
Q 040453 21 TPANMKSLAIQVITGRWFMVFASFLI-MAAAGATYMFSLYSGDIKY-ALGYDQTTLNLLSF-FKDLGANVGILSGLINEI 97 (547)
Q Consensus 21 ~~~~~~~~~~~~~~~Rw~~l~a~~~v-~l~~Gt~Y~fSiys~~L~~-~~~~sqs~l~~is~-~~~vG~~~gi~~G~l~D~ 97 (547)
.|.|..--.+...+--|..|..+.+. .++--.-+.||...+++++ ++|+|.+|+.++.. ....++..-++.|.+.||
T Consensus 17 ~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr 96 (462)
T PRK15034 17 KPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI 96 (462)
T ss_pred CCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36665444443222123444444433 3344445777887888876 79999999998644 444555556999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhh
Q 040453 98 TPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVG 176 (547)
Q Consensus 98 ~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~G 176 (547)
+|+|.+..++.++..++..++.+..+... ++++.+++..++.|.+ +..+.++++...+|||+ +||++.|+..+.-.
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~ 173 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGN 173 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHh
Confidence 99999999999998888765544332222 4577777666666666 45678899999999996 59999999875544
Q ss_pred hhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH--HHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 040453 177 LSGAIITQLYRAFYGDDTKSLILFIGWLPAAIS--FAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQ 254 (547)
Q Consensus 177 LSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~--li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~ 254 (547)
++..+...+ .|.++. +...+--+.++.. .++...... . ..+|.....+..
T Consensus 174 ~G~~l~~~l------------------~p~~i~~~l~~~~G~~~~~~~--~g~~~~~~~---~---~~~~~~~~iv~~-- 225 (462)
T PRK15034 174 LGVSVMQLV------------------APLVIFVPVFAFLGVNGVPQA--DGSVMSLAN---A---AWIWVPLLAIAT-- 225 (462)
T ss_pred hHHHHHHHH------------------HHHHHHHHHHHHhcccccccc--ccchHHHHH---H---HHHHHHHHHHHH--
Confidence 544433321 122221 1111111111100 011111110 0 001111110000
Q ss_pred cccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCC
Q 040453 255 TDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSG 334 (547)
Q Consensus 255 ~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 334 (547)
++.++ . .+++++ +
T Consensus 226 ---------------i~~~~---~-----------------~~~~~~--~------------------------------ 238 (462)
T PRK15034 226 ---------------IAAWS---G-----------------MNDIAS--S------------------------------ 238 (462)
T ss_pred ---------------HHHHH---h-----------------CCCccc--c------------------------------
Confidence 00000 0 001000 0
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHH
Q 040453 335 STSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIW 414 (547)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~ 414 (547)
+ ++. ...++.+|+++-|++-+.+++.-|.-..+.+-.++..++ .++.........+..+.
T Consensus 239 -------------~-~~~-----~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~ 298 (462)
T PRK15034 239 -------------R-ASI-----ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFI 298 (462)
T ss_pred -------------c-cCH-----HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHH
Confidence 0 000 124678999999999998888777655555555556555 23333333335566888
Q ss_pred HhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHH--HHHhhc----cchHH-----HHHHHHHhhhccchhhHHH
Q 040453 415 NYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHL--LIAFNV----PGGLY-----VASIIIGFCFGAQWPLVFA 483 (547)
Q Consensus 415 n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~l--ll~~~~----~~~l~-----~~~~liG~~~G~~~~~~p~ 483 (547)
..+.|.+.|+++||++++ | ++.+.++.+++..+ ++.... ...++ ...+..|++.|+.+-+.|.
T Consensus 299 ~~l~rplgG~LADRiG~~----~--vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 299 GAIARSVGGAISDKFGGV----R--VTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHhhHHHHHhcCch----H--HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 999999999999988754 2 22233332222221 111111 11122 2335558899999988888
Q ss_pred HHHH--hhc---------------CCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhh
Q 040453 484 IISE--LFG---------------LKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 484 l~s~--~FG---------------~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~ 527 (547)
+..+ -.. .|+.|.-=|++.....+|++++ |.++|..+|.....
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~-p~~~g~~~~~~g~~ 432 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFI-PQAFGMSLNMTGSP 432 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHHHHcCCc
Confidence 7652 111 1267777888888888888665 67899998876443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.7e-16 Score=158.10 Aligned_cols=333 Identities=13% Similarity=0.068 Sum_probs=211.6
Q ss_pred HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHh
Q 040453 63 IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVG 141 (547)
Q Consensus 63 L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lg 141 (547)
...+++.|..|+..+.....++.. ..++.|.+.||+|+|.+++++.++..++..++...- .....++|.+++...+.
T Consensus 25 ~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 25 YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA--LLGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH--HcCCCcHHHHHHHHHHH
Confidence 445678899999998776667765 589999999999999999999988877776654331 12123567666666666
Q ss_pred hcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeecc
Q 040453 142 ANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILK 220 (547)
Q Consensus 142 g~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~ 220 (547)
+.+.+....+......+++|+ +|+.+.|+......++..+-..+...+.+.
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---------------------------- 154 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---------------------------- 154 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 777777777777778899974 799999999888888765443322221110
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCc
Q 040453 221 VIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSV 300 (547)
Q Consensus 221 ~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~ 300 (547)
.+.+..|. .. ++..++. .+++.. .+ .|+
T Consensus 155 ----~g~~~~~~---~~----~~~~~~~--------------------~~~~~~------~~--------------~~~- 182 (365)
T TIGR00900 155 ----LGIKWAIW---VD----AVGFAIS--------------------ALLIVS------VR--------------IPE- 182 (365)
T ss_pred ----hhHHHHHH---HH----HHHHHHH--------------------HHHHHh------cc--------------ccc-
Confidence 00001111 00 0000000 000000 00 010
Q ss_pred ccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhh
Q 040453 301 EIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGV 380 (547)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~ 380 (547)
+..++ ++ + . + ++.. .+. ....++.+|++++|.+.+..++..
T Consensus 183 ~~~~~---------~~----~-----~-----------~------~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 223 (365)
T TIGR00900 183 LAASE---------IQ----A-----L-----------S------NAVL--RDT--REGIKFVLKNPLLRTLLLLALLFN 223 (365)
T ss_pred CCCcc---------cc----c-----c-----------c------hhHH--HHH--HhHHHHHHcCcHHHHHHHHHHHHH
Confidence 00000 00 0 0 0 0000 000 113567889999998888776665
Q ss_pred hchheeecchhhh-hhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q 040453 381 GGTLTAIDNLGQI-GGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFN 458 (547)
Q Consensus 381 g~Gl~~i~n~~~I-~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~ 458 (547)
........+..+. .++ ++.++.+.+...++.++...++++..|+++||.+|| ..+....++..++.+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 224 LVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM------ALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHHHhh
Confidence 5554444344444 444 688777888888999999999999999999977543 23333344444444444333
Q ss_pred c--cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 459 V--PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 459 ~--~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
. ...+++..++.|+++|.......+++.|.+..++.|+.+|+......++. .+++.+.|.++|+
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~g~l~~~ 363 (365)
T TIGR00900 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW-PLGLILAGPLADH 363 (365)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2 22345677899999999999999999999999999999999988877876 6688899999986
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=161.61 Aligned_cols=384 Identities=14% Similarity=0.077 Sum_probs=227.5
Q ss_pred ccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Q 040453 55 MFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133 (547)
Q Consensus 55 ~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~ 133 (547)
..+..-|.+++++|.|..+..++.+...++.. ..++.|.+.||+|+|.+++++.++..++..+... . .+.+.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~--~~~~~ 92 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV-----A--PNLEL 92 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC-----c--CCHHH
Confidence 45567889999999999999988666667665 4789999999999999999999999888765432 1 34556
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHH
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGD-DTKSLILFIGWLPAAISFA 211 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~-~~~~fllfla~~p~~v~li 211 (547)
+....++.|.+.+.....+.....+++| ++||.+.++......++..+-..+...+.+. +-...++..+.......++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 6666677777877777777788889997 6899999998888778776655544444332 1122222222222222222
Q ss_pred hhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhh
Q 040453 212 FLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSK 291 (547)
Q Consensus 212 ~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~ 291 (547)
.....+..+++++ ++.+... .... ..+.............+-..............+.... ....+
T Consensus 173 ~~~~~~~~~~~~~-~~~d~~g-~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------- 238 (485)
T TIGR00711 173 AFFILPRDKPAAS-ENFDFLG-LLLL--SVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII-AFVVW--------- 238 (485)
T ss_pred HHHHcCCcccccc-CCCcHHH-HHHH--HHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH-HHHHH---------
Confidence 2223222111111 1111100 0000 0000000000000000000000000000000000000 00000
Q ss_pred hhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHH
Q 040453 292 QMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLI 371 (547)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwl 371 (547)
| ...++| ....+.+|+++||.
T Consensus 239 --------------------------------------~----------------~~~~~~-----~~~~~~~~~~~~~~ 259 (485)
T TIGR00711 239 --------------------------------------E----------------LTDDNP-----LVDLRLFKYRNFTI 259 (485)
T ss_pred --------------------------------------H----------------HcCCCC-----ccCHHHHcCCChHH
Confidence 0 000001 11245778899998
Q ss_pred HHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHH
Q 040453 372 LFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCI 450 (547)
Q Consensus 372 l~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i 450 (547)
..+..++.........+...+..++ +|+++.+++.......+...+++++.|++.||+++| ..+.+..++.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~g~~~~~~ 333 (485)
T TIGR00711 260 GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR------KLVTIGLILYAV 333 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH------HHHHHHHHHHHH
Confidence 8776555443333334445556665 688888888888999999999999999999987643 234445556666
Q ss_pred HHHHHHh--hc--c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 451 GHLLIAF--NV--P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 451 ~~lll~~--~~--~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
+.+++.. .. + ..+.+..++.|++.|..+......+.+.++.++.|+-.|+..+...+|. .+++.++|.++|++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 334 GFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGG-SIGTALITTILTNRT 412 (485)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6655441 11 1 2344567889999999887777888888999999999999877777776 567778888888654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=161.83 Aligned_cols=345 Identities=14% Similarity=0.090 Sum_probs=203.5
Q ss_pred HhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcc
Q 040453 66 ALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANS 144 (547)
Q Consensus 66 ~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g 144 (547)
++++|..+...+..+..++.. ..+++|.+.||+|+|.++.++.++..++..+...... .+.+.+.+.-++.|.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence 688999998887666666665 4799999999999999999999888887665433221 2234455566677788
Q ss_pred cccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeeccccc
Q 040453 145 QSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIR 223 (547)
Q Consensus 145 ~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~ 223 (547)
.+..+.++.....+||| ++||++.|+...+..++..+-..+...+....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------------------------ 194 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW------------------------------ 194 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------------------
Confidence 88888888889999998 57999999998888887766554433322110
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccc
Q 040453 224 QPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEII 303 (547)
Q Consensus 224 ~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (547)
.+-+..|. ..+ +..++..+ + ....+ + ++| +.+
T Consensus 195 -~gw~~~f~---i~~----~~~~~~~~-------------------~-~~~~~-----~-------------~~p--~~~ 226 (465)
T TIGR00894 195 -GGWPMIFY---VFG----IVGCAWSL-------------------L-WFVFP-----A-------------DDP--SIH 226 (465)
T ss_pred -CCCCeehh---hhh----HHHHHHHH-------------------H-HHHHh-----c-------------CCc--ccC
Confidence 01111222 110 00000000 0 00000 0 001 000
Q ss_pred cCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhch
Q 040453 304 TEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGT 383 (547)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~G 383 (547)
++ ++ +++.+ +.++.. ++ . +.+. .....+++.++++++|.+++..++.....
T Consensus 227 ~~---------~~-~~~~~-------~i~~~~---~~-------~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (465)
T TIGR00894 227 PC---------IS-KFEKK-------YINSSL---QG-------Q-KGST-RQSLPIKAIPKSLPVWAIWFAIFGHFWLY 277 (465)
T ss_pred CC---------CC-HHHHH-------HHHhhc---cc-------c-cCCC-CCCCCHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 00 00 00000 000000 00 0 0000 01235789999999999999877766555
Q ss_pred heeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHH----HHHHHHHHHHHHHHHh-
Q 040453 384 LTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLML----TIILLLSCIGHLLIAF- 457 (547)
Q Consensus 384 l~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l----~~~~~~~~i~~lll~~- 457 (547)
..+...+..+.++ +|.+..+.+...++..++..+++++.|+++||+.+|+...|.... .+..+...+..+....
T Consensus 278 ~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (465)
T TIGR00894 278 TILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL 357 (465)
T ss_pred HHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555666666654 788888888888999999999999999999999876554443321 1111111111111111
Q ss_pred hccchH-HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 458 NVPGGL-YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 458 ~~~~~l-~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
...... .+...+.+...+......-....|..+ ++.|.-.|+..+...+++ .+.+.+.|.+.|.+
T Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~-~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 358 SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGG-LIASTLAGNILSQD 423 (465)
T ss_pred CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHH-HHHHHhhheeeCCC
Confidence 111122 223344445555444444445556665 699999999998888888 56778888887653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=153.24 Aligned_cols=347 Identities=14% Similarity=0.098 Sum_probs=210.1
Q ss_pred ccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNF 112 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~ 112 (547)
+-|..+........+..+ .|.-.-.-|++++++|+|.+|...+..+..++. ...++.|.+.||+|+|.++.++.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~ 96 (394)
T PRK10213 17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT 96 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 346665555555444444 455555778899999999999988644444544 458999999999999999999999998
Q ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 113 FGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 113 ~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
+++.+..+. .++|.+...-.+.|.+.+.....+.....++|| ++||.+.++..+..+++..+-..+...+.+
T Consensus 97 ~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 97 LSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887654221 346666666666777777777777777889997 468999999988877765443322222111
Q ss_pred CCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 040453 192 DDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMF 271 (547)
Q Consensus 192 ~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ 271 (547)
. -+.+..|. ..+ ++. ++ .++
T Consensus 170 ~--------------------------------~gw~~~f~---~~~-~l~---~~---------------------~~l 189 (394)
T PRK10213 170 L--------------------------------IGWRNVFN---AAA-VMG---VL---------------------CIF 189 (394)
T ss_pred h--------------------------------cCHHHHHH---HHH-HHH---HH---------------------HHH
Confidence 0 00011111 000 000 00 000
Q ss_pred HHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCC
Q 040453 272 LLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSP 351 (547)
Q Consensus 272 ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 351 (547)
+ . .+ ..|+.+ ++ + +
T Consensus 190 ~-~------~~-------------~~p~~~--~~---------------------~-----------------------~ 203 (394)
T PRK10213 190 W-I------IK-------------SLPSLP--GE---------------------P-----------------------S 203 (394)
T ss_pred H-H------HH-------------HCCCCC--cc---------------------c-----------------------c
Confidence 0 0 00 001000 00 0 0
Q ss_pred CCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhh
Q 040453 352 PDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFL 430 (547)
Q Consensus 352 ~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~ 430 (547)
+. ..+.++.+|++.+|.+.+..++.......+.....+. .++.|.+..+.+...+..++++.+|++..|.+.||..
T Consensus 204 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~ 280 (394)
T PRK10213 204 HQ---KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV 280 (394)
T ss_pred cc---hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 0124577899999998776554443333333444454 4457888877888889999999999999988888632
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 431 AKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 431 ~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
|...+....+..++..++..... ...+.+..++.|++++......++.+.+... ++.++..+..+....+|.
T Consensus 281 ------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 281 ------KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLAN 353 (394)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH
Confidence 22222222232333333322222 2344557788999999999999987777663 556666665555555555
Q ss_pred HHHHHHHHHHHhHHHH
Q 040453 510 YLLNVRVAGHLYDKEA 525 (547)
Q Consensus 510 ~~l~~~l~G~~yd~~~ 525 (547)
.+++.++|.++|+-.
T Consensus 354 -~~G~~l~G~l~~~~g 368 (394)
T PRK10213 354 -TCGAAIGGYALDNIG 368 (394)
T ss_pred -HHHHHHHHHHHhccC
Confidence 567789999999653
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=155.70 Aligned_cols=395 Identities=14% Similarity=0.143 Sum_probs=223.6
Q ss_pred HhhhccHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHH
Q 040453 31 QVITGRWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGA 108 (547)
Q Consensus 31 ~~~~~Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~ 108 (547)
...++||..+....+..+..+.. +..+...|++++++|+|+.+...+.....++.. ..++.|.+.||+|+|.+++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 92 (496)
T PRK03893 13 HLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI 92 (496)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33456676655555555554443 466667799999999999999887666666665 4799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHH
Q 040453 109 VLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 109 vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
++..++..++.+. .++|.+.....+.|.+.+..+.+......++||+ +||.+.++......++..+-..+..
T Consensus 93 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 93 VLFSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887765432 2455555566666777677777777778899975 6899999998888887766665555
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccC----Cccc---hhhHHH--------HHHHHHHHHHHHHHHHHh
Q 040453 188 AFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQ----PNEL---KVFYNF--------LYISLALAGFLMMIIIVE 252 (547)
Q Consensus 188 ~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~----~~~~---~~f~~~--------~~~~~~l~v~l~~~~~~~ 252 (547)
.+.+.-.-...++++..+..+.++. .+..|++.+ +++. +..... ..................
T Consensus 166 ~l~~~~~w~~~f~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPIIFALWL---RKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFA 242 (496)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHH---HHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 5444322223333444444433322 222232210 0000 000000 000000000000000000
Q ss_pred hccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccC
Q 040453 253 KQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVS 332 (547)
Q Consensus 253 ~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 332 (547)
. .... ........+++....+.. ..+
T Consensus 243 ~---~~~~-~~~~~~~~~~~~~~~~~~-----------------------~~~--------------------------- 268 (496)
T PRK03893 243 G---NLQN-AAIVAVLGLLCAAIFISF-----------------------MVQ--------------------------- 268 (496)
T ss_pred h---hhcc-hhHHHHHHHHHHHHHHHH-----------------------HHH---------------------------
Confidence 0 0000 000000000000000000 000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHH
Q 040453 333 SGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLV 411 (547)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~ 411 (547)
..+. +.+.++.+.+..++....+..+.....++.+ ++|.+..+++...+..
T Consensus 269 -----------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~ 320 (496)
T PRK03893 269 -----------------SSGK-----------RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFS 320 (496)
T ss_pred -----------------hccc-----------chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 0000 1123344444444433333334456677775 6889888889999999
Q ss_pred HHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccch---HHHHHHHHHhhhccchhhHHHHHHHh
Q 040453 412 SIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGG---LYVASIIIGFCFGAQWPLVFAIISEL 488 (547)
Q Consensus 412 si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~---l~~~~~liG~~~G~~~~~~p~l~s~~ 488 (547)
.++..+|++..|+++||+++| + .+.+..++..+..+++....... +.....+.++...+...+.|.++.|.
T Consensus 321 ~~~~~~g~~~~g~l~dr~g~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (496)
T PRK03893 321 GFGAAVGCCVGGFLGDWLGTR----K--AYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGY 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcch----H--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhh
Confidence 999999999999999988754 2 22222233333332222111111 12222333444445567899999999
Q ss_pred hcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 489 FGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 489 FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
+..++-|+.+|+......+|. .+++.+.|.++|+-
T Consensus 395 ~~~~~~g~~~~~~~~~~~~g~-~lgp~l~g~l~~~~ 429 (496)
T PRK03893 395 FDTEQRAAGLGFTYNVGALGG-ALAPILGALIAQRL 429 (496)
T ss_pred CCHHHhhcccchhhhhhhHHH-HHHHHHHHHHhccC
Confidence 999999999999877777776 56788888888863
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=153.51 Aligned_cols=326 Identities=15% Similarity=0.097 Sum_probs=199.6
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQV 131 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~ 131 (547)
...+...-|.+++++|+|.++...+.....++.. ..++.|.+.||+|+|.++.++.++..++..++... .++
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 93 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNI 93 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence 3455555688899999999999987666666665 47899999999999999999999988887765432 345
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
+.++...++.|.+.+..+++......+++|+ +||++.|+......++..+-..+...+.+.
T Consensus 94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------------------ 155 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW------------------ 155 (385)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 5566666677788888877777788899985 689999998888777765544333222110
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
.+.+..|. .. ++..++. .++.+. . .+
T Consensus 156 --------------~~~~~~~~---~~----~~~~~~~--------------------~~~~~~---~--~~-------- 181 (385)
T TIGR00710 156 --------------LSWHAIFA---FL----SLAGILL--------------------SALIFF---I--LP-------- 181 (385)
T ss_pred --------------cCHHHHHH---HH----HHHHHHH--------------------HHHHHH---h--CC--------
Confidence 00000111 00 0000000 000000 0 00
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
+++ + .++ + . +..+ ...+.++.+|++++|
T Consensus 182 ------~~~-~-~~~---------------------~--------------------~-~~~~--~~~~~~~~~~~~~~~ 209 (385)
T TIGR00710 182 ------ETL-P-YEA---------------------R--------------------I-QIST--YFETFLLLLKSKMFW 209 (385)
T ss_pred ------CCC-C-Ccc---------------------c--------------------C-CHHH--HHHHHHHHHcCchhH
Confidence 000 0 000 0 0 0000 012456788999999
Q ss_pred HHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
.+.+...+..+....+......+.+ .+|.++.+.+...+...+...+|++..|+++||+++|+ .+....+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~------~~~~~~~~~~ 283 (385)
T TIGR00710 210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS------LLRMGLILFA 283 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence 8877665554443334444444554 57887777888889999999999999999999887542 2222233333
Q ss_pred HHHHHHHhh---c-c--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccch-hhHHHHHHHHHHH
Q 040453 450 IGHLLIAFN---V-P--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAAS-PLGSYLLNVRVAG 518 (547)
Q Consensus 450 i~~lll~~~---~-~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~-~~gs~~l~~~l~G 518 (547)
++.+++... . . ..++....+.|++++......+..+.|.+. ++.|+-.++..... .+++ +.++ +.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-i~~~-~~~ 356 (385)
T TIGR00710 284 VSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGA-IVGY-LVS 356 (385)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHH-HHHH-HHH
Confidence 333222211 1 1 123345678899999999999999999886 66777777654433 3343 4444 444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=159.02 Aligned_cols=328 Identities=22% Similarity=0.281 Sum_probs=201.0
Q ss_pred cccccH-HHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Q 040453 56 FSLYSG-DIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133 (547)
Q Consensus 56 fSiys~-~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~ 133 (547)
++..-+ .+++++|+|..|+.++.+...++.. ..++.|.+.||+|+|.++.++.++..++..+.. +. .+.|.
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~-----~~~~~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA-----SNFWL 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH-----CCHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh-----hhHHH
Confidence 344445 7889999999999998776666664 589999999999999999999999999944433 22 23455
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAF 212 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~ 212 (547)
+....++.|.+.+..+.+......+++|+ +|+.+.++......++..+-..+...+. +..
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~------------------ 148 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-SYF------------------ 148 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHC------------------
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-hcc------------------
Confidence 66667777888888888888889999987 8999999999998888755543333322 110
Q ss_pred hheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhh
Q 040453 213 LRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQ 292 (547)
Q Consensus 213 ~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~ 292 (547)
+.+..|. .. ++..++..++. .++ .+
T Consensus 149 -------------~~~~~~~---~~----~~~~~~~~il~-------------------~~~------~~---------- 173 (352)
T PF07690_consen 149 -------------GWRWAFL---IS----AILSLIAAILF-------------------ILF------LP---------- 173 (352)
T ss_dssp -------------HHCCHHH---HH----HHHHHHHHHHH-------------------HCC------C-----------
T ss_pred -------------ccccccc---cc----cchhhhhhhhH-------------------hhh------hh----------
Confidence 0011121 11 00000000000 000 00
Q ss_pred hccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHH
Q 040453 293 MALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLIL 372 (547)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll 372 (547)
++++ +..++ ++ + |. + +..+++.. + .+++..+++.+|.+
T Consensus 174 ---~~~~-~~~~~---------~~----------~--~~---------~-----~~~~~~~~--~-~~~~~~~~~~~~~~ 211 (352)
T PF07690_consen 174 ---EPPP-PRERE---------SP----------K--ES---------E-----SKKPKPLK--P-GFKSLFKNPVLWIL 211 (352)
T ss_dssp -----ST-TTT-----------SS----------T--TT---------T-------HHHCCC--H--CTHHHHHHCCHHH
T ss_pred ---hccc-ccccc---------cc----------c--cc---------c-----cccccccc--c-ccccccccchhhhh
Confidence 0010 00000 00 0 00 0 00000000 1 24667788888855
Q ss_pred HHHHHHhhhchheeecchhhh-hhhcCCC-CcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHH
Q 040453 373 FFATICGVGGTLTAIDNLGQI-GGSLGYP-KKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCI 450 (547)
Q Consensus 373 ~~~~~~~~g~Gl~~i~n~~~I-~~a~g~~-~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i 450 (547)
++.+++....-..+....... .+..+.+ ..+.+...++.++....+++..|+++||+++|+ +.........+..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR---RLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH---HHHHHHHHHHHHHH
Confidence 555555433333344444443 4567877 567777889999999999999999999876531 11122222222222
Q ss_pred HHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 451 GHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 451 ~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
...+..... ....++..++.|+++|........++.|.+..++.|+.+|+..+...++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 289 GLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG 348 (352)
T ss_dssp HHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 222222221 23345577899999999999999999999999999999999988777776
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=151.21 Aligned_cols=330 Identities=12% Similarity=0.036 Sum_probs=193.3
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHH-hccccCc
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAV-TKKIARP 129 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~-~g~i~~~ 129 (547)
......+....+++++|+|.+++..+..+..++.. ..++.|.+.||+|+|.++.++.++..++.....+.. .+.....
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 33445566677899999999999998766667765 479999999999999999999988877766544321 1111112
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAI 208 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v 208 (547)
+++.+++.-++.|.+.+..+.++.....+++| ++||.+.++......++. ++......+.-+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l~~~l~~~--------------- 174 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGAL-AIGAPLGVLLYHW--------------- 174 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHH-HHHHHHHHHHHHc---------------
Confidence 34445555667778888877777777778885 679999998655544432 2221111110000
Q ss_pred HHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhh
Q 040453 209 SFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLW 288 (547)
Q Consensus 209 ~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~ 288 (547)
. .+.....+ ..+..++ .+ ++ .+
T Consensus 175 ----------------~----g~~~~~~~---~~~~~~~---------------------~~--~~------~~------ 196 (399)
T PRK05122 175 ----------------G----GLAGLGLL---IMLLALL---------------------GL--LL------AR------ 196 (399)
T ss_pred ----------------c----cHHHHHHH---HHHHHHH---------------------HH--HH------Hh------
Confidence 0 01100000 0000000 00 00 00
Q ss_pred hhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHH
Q 040453 289 KSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLD 368 (547)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~ 368 (547)
..|+ + ++ + + ++ ..+.++.+| +
T Consensus 197 -------~~~~-~--~~---------~-----------~-----------------------~~----~~~~~~~~~--~ 217 (399)
T PRK05122 197 -------PRPA-V--PP---------V-----------K-----------------------GE----RLPFRRVLG--R 217 (399)
T ss_pred -------cCCC-C--CC---------C-----------C-----------------------cc----chhHHHHHH--H
Confidence 0010 0 00 0 0 00 001233333 2
Q ss_pred HHHHHHHHHHh-hhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHH
Q 040453 369 MLILFFATICG-VGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLL 447 (547)
Q Consensus 369 Fwll~~~~~~~-~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~ 447 (547)
+|.....+.+. .+.+ ++........++.+. .+.+...+++.++...||+..|++.||+++| ..+....++
T Consensus 218 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~~~~~ 288 (399)
T PRK05122 218 VWPYGMGLALASIGFG-TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGL------RVAIVSLLV 288 (399)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHH
Confidence 34332222111 1111 122233444555665 3456677889999999999999999987643 233344445
Q ss_pred HHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 448 SCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 448 ~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
.+++.+++..... ..+++..++.|++++..+......+.|.+..++.|+.+|+......+|. .+++.+.|.+.|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 365 (399)
T PRK05122 289 EILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL-GITGPLAGLVASWF 365 (399)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 5555544443332 2344567899999998888888888999999999999999888777776 45677889988764
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=146.31 Aligned_cols=310 Identities=22% Similarity=0.253 Sum_probs=224.6
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
..+.++.+.+.+.+++|.++.+.+.+.....++.. ..++.|.+.||+|+|..+.++.++..+++.++.+. .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 86 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS 86 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence 34667788888889999999999998777777775 47999999999999999999999999998876543 24
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAIS 209 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~ 209 (547)
.+.+.....+.+.+.+..+.+......+++|+ +|+++.++......++..+-..+...+.+...
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------------- 151 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG--------------- 151 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Confidence 55566666777888888888888888899986 89999999988888877655543333222100
Q ss_pred HHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhh
Q 040453 210 FAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWK 289 (547)
Q Consensus 210 li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~ 289 (547)
.+..+. + .++..++..+ ..
T Consensus 152 -----------------~~~~~~----~---~~~~~~~~~~------------------~~------------------- 170 (352)
T cd06174 152 -----------------WRWLFL----I---LAILGLLLAL------------------LL------------------- 170 (352)
T ss_pred -----------------HHHHHH----H---HHHHHHHHHH------------------HH-------------------
Confidence 000000 0 0000000000 00
Q ss_pred hhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHH
Q 040453 290 SKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDM 369 (547)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~F 369 (547)
. . -+ +++
T Consensus 171 --------~-------------------------------------------------~--~~--------------~~~ 177 (352)
T cd06174 171 --------L-------------------------------------------------F--LL--------------RLL 177 (352)
T ss_pred --------H-------------------------------------------------H--HH--------------HHH
Confidence 0 0 00 667
Q ss_pred HHHHHHHHHhhhchheeecchhhhhhhc-CCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHH
Q 040453 370 LILFFATICGVGGTLTAIDNLGQIGGSL-GYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLS 448 (547)
Q Consensus 370 wll~~~~~~~~g~Gl~~i~n~~~I~~a~-g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~ 448 (547)
|.+.+..++.......+.....++.++. +.++.+.+...++..+.+.++++..|.++||+++|++ .+....++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 252 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGLLLA 252 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHH
Confidence 7777766666666666666666677665 7777778888999999999999999999999876521 444555555
Q ss_pred HHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 449 CIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 449 ~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.++.+++..... ..+++..++.|++.+........++.|.+..++.++.+++......++. .+++.+.|.++|.
T Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~g~l~~~ 327 (352)
T cd06174 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG-ALGPLLAGLLLDT 327 (352)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 566555544332 3456688999999999999999999999999999999999998888888 6688899999983
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=155.04 Aligned_cols=403 Identities=12% Similarity=0.040 Sum_probs=231.2
Q ss_pred ccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNF 112 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~ 112 (547)
++|..+++.++..+.... .-.-++--|++.+++|.|++|++++.++-.++. .+.++.|++.||+|+|.+++++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 356655554444444433 244556678999999999999999866666665 357899999999999999999999999
Q ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC--CCCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 113 FGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP--ESRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 113 ~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP--~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
+|..+... . .+.|++...-.+.|.|.+....++.....++|+ ++||++.|+.....+++..+-..+...+.
T Consensus 83 ~~~~~~~~-----a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 83 LASLAAAF-----S--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHH-----c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98776432 2 346666666566666777666666666778884 47999999998888887655554444443
Q ss_pred CC-CchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHH
Q 040453 191 GD-DTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIV 269 (547)
Q Consensus 191 ~~-~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~ 269 (547)
+. +-+..++.......+..++...+++..|.+ ++++. .+...... ..+..++........ + ... ........
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-~~~~~-d~~g~~~~--~~~~~~l~~~~~~~~-~-~~~-~~~~~~~~ 228 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR-RDQPL-NLGHALML--IVAILLLVYSAKTAL-K-GFL-SLWVTSLT 228 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCCCC-ChHhHHHH--HHHHHHHHHHHHhcc-c-cCC-chHHHHHH
Confidence 32 112222222222222222222232211111 11111 11100000 111111111111111 0 000 00000000
Q ss_pred HHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCC
Q 040453 270 MFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCF 349 (547)
Q Consensus 270 i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (547)
+++-..-+......| . ..
T Consensus 229 ~~~~~~~l~~f~~~e-------------------~-------------------------------------------~~ 246 (495)
T PRK14995 229 LLTGALLLGLFIRTQ-------------------L-------------------------------------------AA 246 (495)
T ss_pred HHHHHHHHHHHHHHH-------------------h-------------------------------------------cC
Confidence 000000000000000 0 00
Q ss_pred CCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhh
Q 040453 350 SPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI 428 (547)
Q Consensus 350 ~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~ 428 (547)
+.|- -..+.+|++.|+...+..++...+-........+..|. +|+++.+++......++...++.++.|++.||
T Consensus 247 ~~p~-----~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r 321 (495)
T PRK14995 247 SRPM-----IDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR 321 (495)
T ss_pred CCCC-----cCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 11567888999887776665444332233334444454 78888889999999999999999999999998
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHhhc---cc-hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 429 FLAKYKFPRPLMLTIILLLSCIGHLLIAFNV---PG-GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 429 l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~---~~-~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
+++| ..+....++.+++..++.... .. ..++..++.|++.|.........+.+....++.|.-.++..+.
T Consensus 322 ~g~~------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 395 (495)
T PRK14995 322 LGLR------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMA 395 (495)
T ss_pred cCch------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHH
Confidence 8643 233444455555554332211 11 2345678899999998888888888888888889888887776
Q ss_pred hhhHHHHHHHHHHHHHhHHHH
Q 040453 505 SPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 505 ~~~gs~~l~~~l~G~~yd~~~ 525 (547)
..+|. .+++.+.|.+++..-
T Consensus 396 ~~lG~-~~G~ai~g~i~~~~~ 415 (495)
T PRK14995 396 YELGA-GLGIAIFGLLLSRSY 415 (495)
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 66666 556667778777543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=151.97 Aligned_cols=365 Identities=11% Similarity=0.048 Sum_probs=220.8
Q ss_pred HHHhhcccccc-ccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHh
Q 040453 46 IMAAAGATYMF-SLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVT 123 (547)
Q Consensus 46 v~l~~Gt~Y~f-Siys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~ 123 (547)
.-+.-|..+.. +..-|++++++|+|..|...+.....++.. .+++.|.+.||+|+|.++.+|.++..+|..+++..
T Consensus 11 ~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~-- 88 (410)
T TIGR00885 11 LFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA-- 88 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444444 366799999999999999998777777765 48999999999999999999999999997765322
Q ss_pred ccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchH-HHHHH
Q 040453 124 KKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKS-LILFI 201 (547)
Q Consensus 124 g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~-fllfl 201 (547)
... .+++.+....++.|.|.+..++++-....+..|+ +|+...++..+++++++.+-..+...++..+... -...+
T Consensus 89 ~~~--~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 89 AEI--MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred Hhh--ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 112 3466666667778888888887777777778875 6899999999999998876665555554321000 00000
Q ss_pred HHHHHHHHHHhhheeeeccccc---CCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchh
Q 040453 202 GWLPAAISFAFLRTIRILKVIR---QPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLV 278 (547)
Q Consensus 202 a~~p~~v~li~~~~ir~~~~~~---~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~ 278 (547)
.+..|..+ ..++....+ . .|+.+..+ .+++.. .
T Consensus 167 --------------~~~~~~~~~~~~~~~~~~w~-~--------~fl~~a~~------------------~~~~~~---~ 202 (410)
T TIGR00885 167 --------------DKLSPEELSAIKHSDLASVQ-T--------PYMIIGAV------------------VLAVAL---L 202 (410)
T ss_pred --------------hhcCHHHHHHHHHHHHHHHH-H--------HHHHHHHH------------------HHHHHH---H
Confidence 00000000 000000011 0 11111000 000000 0
Q ss_pred hhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 040453 279 VVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDY 358 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 358 (547)
.... ..|+ .+++ + + . +.+. ..
T Consensus 203 ~~~~-------------~~p~--~~~~---------------------~--~-----------------~-~~~~---~~ 223 (410)
T TIGR00885 203 IMLT-------------KMPA--LNHS---------------------D--A-----------------K-QISF---SA 223 (410)
T ss_pred HHHh-------------cCCC--CCcc---------------------c--c-----------------c-cccc---hh
Confidence 0000 0110 0000 0 0 0 0000 01
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCC--CCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGY--PKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~--~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
+.++.+|++++|+..+..++-.+.-..+.++..+..++.+. ++..++...+..-..-.+||++.|++.||+.+|
T Consensus 224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~---- 299 (410)
T TIGR00885 224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH---- 299 (410)
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence 34567899999998888888777776677777777776542 333345566666677899999999999987543
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHH
Q 040453 437 RPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRV 516 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l 516 (547)
..+.+..+..++.+++.............+++|++.+..|.+.-++..+.+|.+.-..--+++. ..+|. .+.|++
T Consensus 300 --~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gg-a~~p~l 374 (410)
T TIGR00885 300 --KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGG-GIVPPL 374 (410)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhcc-chHHHH
Confidence 2344455555555555444333333557789999999999999999999998443222233322 23666 556889
Q ss_pred HHHHhHHHHh
Q 040453 517 AGHLYDKEAK 526 (547)
Q Consensus 517 ~G~~yd~~~~ 526 (547)
.|.+.|+..+
T Consensus 375 ~G~~~d~~~~ 384 (410)
T TIGR00885 375 QGFIIDMKEI 384 (410)
T ss_pred HHHHHHHhcc
Confidence 9999996543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-15 Score=156.68 Aligned_cols=372 Identities=13% Similarity=0.055 Sum_probs=199.9
Q ss_pred cccccHHHHHHhCCC--------hhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040453 56 FSLYSGDIKYALGYD--------QTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKI 126 (547)
Q Consensus 56 fSiys~~L~~~~~~s--------qs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i 126 (547)
.+..-+.++++++++ +.|...+.....++.. ..++.|.+.||+|+|.+++++.++..++..+..+ ....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~--~~~~ 124 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL--AAFA 124 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHH--hccc
Confidence 333345566666666 8888887666666664 5899999999999999999999998888665432 1111
Q ss_pred cCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHH-H-HHhCCCch-HHHHHHH
Q 040453 127 ARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLY-R-AFYGDDTK-SLILFIG 202 (547)
Q Consensus 127 ~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~-~-~~f~~~~~-~fllfla 202 (547)
.+.|.+.....+.|.|.+..+........+++| ++||++.++...+..++..+-..+. . .+..+..+ ...+.+.
T Consensus 125 --~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~ 202 (481)
T TIGR00879 125 --LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202 (481)
T ss_pred --cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence 234556666677778888888888888889997 5799999998888777776655444 1 11111000 1111111
Q ss_pred HHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhh
Q 040453 203 WLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVI 282 (547)
Q Consensus 203 ~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~ 282 (547)
..+.++.++...+++..|.. ...+
T Consensus 203 ~~~~~~~~~~~~~l~~~~~~--------------------------------------------------------~~~~ 226 (481)
T TIGR00879 203 LIPAGLLFLGLFFLPESPRW--------------------------------------------------------LVGK 226 (481)
T ss_pred HHHHHHHHHHHhcCCCChHH--------------------------------------------------------HHHc
Confidence 11111111111111100000 0000
Q ss_pred HHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHH
Q 040453 283 EEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQ 362 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q 362 (547)
++.+..++...+..+. ++ ++....+.. +..+.. . + . +.....+. ....++
T Consensus 227 ~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~---~~~~~~---~--~--~---~~~~~~~~---~~~~~~ 276 (481)
T TIGR00879 227 GRVEEARKSLARLRGT-----SG---------EDKELLDEL---ELIDIK---R--S--I---EKRSVQPS---WGSLFS 276 (481)
T ss_pred CChHHHHHHHHHHhCC-----CC---------CcHHHHHHH---HHHHHH---H--H--H---HHhhcccc---HHHHHh
Confidence 0000000000000000 00 000000000 000000 0 0 0 00000000 011122
Q ss_pred hh---ccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhH
Q 040453 363 AL---FSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPL 439 (547)
Q Consensus 363 ~l---~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~ 439 (547)
.. +.+.+|.+++.++........+.+....+.++.|++..++.....+..+.+.+|+++.|+++||++||+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~------ 350 (481)
T TIGR00879 277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP------ 350 (481)
T ss_pred cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------
Confidence 21 244455555544443333333444556666778888877788889999999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHH---hh-cc------ch-HHHHHHHHHhhhccch-hhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 440 MLTIILLLSCIGHLLIA---FN-VP------GG-LYVASIIIGFCFGAQW-PLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 440 ~l~~~~~~~~i~~lll~---~~-~~------~~-l~~~~~liG~~~G~~~-~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
.+.+..++++++.+++. .. .. .. .....++.+..++..+ .+...+++|.++.++.++..++......+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l 430 (481)
T TIGR00879 351 LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHH
Confidence 22333444444444332 11 11 11 2223344445555443 45556679999999999999999888888
Q ss_pred HHHHHHHHHHHHHhHHH
Q 040453 508 GSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~ 524 (547)
|+ .+.+.++|.++|+.
T Consensus 431 g~-~i~~~~~~~~~~~~ 446 (481)
T TIGR00879 431 AN-FIVGFLFPTMLESI 446 (481)
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 88 56778899998864
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-14 Score=148.96 Aligned_cols=322 Identities=13% Similarity=0.060 Sum_probs=195.6
Q ss_pred cccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Q 040453 56 FSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHM 134 (547)
Q Consensus 56 fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l 134 (547)
...+-|++++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.++..+++.+.... +++|.+
T Consensus 25 ~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~~l 97 (381)
T PRK03633 25 LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGFWSW 97 (381)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHH
Confidence 4456788888999999999998777777765 47899999999999999999999988887654321 245555
Q ss_pred HHHHHHhhcccccccchhhhhhhhcC-CCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhh
Q 040453 135 CLYICVGANSQSFANTGSLVTCVKNF-PESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFL 213 (547)
Q Consensus 135 ~~~~~lgg~g~~~~~ta~l~t~~~nF-P~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~ 213 (547)
.+...+.|.+.+...........++. |++||.+.++......++..+-..+...+.+. .
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~------------------- 157 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE-L------------------- 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c-------------------
Confidence 55556666666655444444444555 56899999988777777664433222221110 0
Q ss_pred heeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhh
Q 040453 214 RTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQM 293 (547)
Q Consensus 214 ~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~ 293 (547)
. ..... ...+.. .. .+ ++.. .
T Consensus 158 --~-----------~~~~~---~~~~~~----~~---------------------~~-----~~~~-~------------ 178 (381)
T PRK03633 158 --M-----------SVLPW---VTGLVL----AA---------------------IL-----PLLF-T------------ 178 (381)
T ss_pred --c-----------chHHH---HHHHHH----HH---------------------HH-----HHHH-h------------
Confidence 0 00000 000000 00 00 0000 0
Q ss_pred ccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHH
Q 040453 294 ALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILF 373 (547)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~ 373 (547)
..++ + ++ + +++ +.+.++.+|++.||...
T Consensus 179 --~~~~-~--~~---------------------~----------------------~~~----~~~~~~~~~~~~~~~~~ 206 (381)
T PRK03633 179 --RILN-Q--QA---------------------E----------------------NHD----STSIWPMLKLRQARLGV 206 (381)
T ss_pred --cccC-C--CC---------------------C----------------------CCC----CCCHHHHHHhcchHHHH
Confidence 0010 0 00 0 000 11245678888888765
Q ss_pred HHHHHh-hhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 040453 374 FATICG-VGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGH 452 (547)
Q Consensus 374 ~~~~~~-~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ 452 (547)
..+++. ...+ .+.+-++...++.|.+..+.+..+++..+++..||+..|+++||+++| ..+.....+..++.
T Consensus 207 ~~~~~~~~~~~-~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~------~~l~~~~~~~~~~~ 279 (381)
T PRK03633 207 NGCIISGIVLG-SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL------LVLRVQVFVVILGS 279 (381)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH------HHHHHHHHHHHHHH
Confidence 433222 1111 112234455667788777788889999999999999999999988654 23333344444444
Q ss_pred HHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 453 LLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 453 lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
+++. .....+....+.|++.+..+......+.|....++.+.-++...+...+|. .++|.+.|.++|...
T Consensus 280 ~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~igp~~~G~l~~~~g 349 (381)
T PRK03633 280 IAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGS-LLGPSFTAMLMQNYS 349 (381)
T ss_pred HHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 3332 112233455677777776677777777888877777776777666777777 678889999998753
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-14 Score=148.41 Aligned_cols=331 Identities=14% Similarity=0.016 Sum_probs=194.6
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQV 131 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~ 131 (547)
-+.|+..-|++++++|+|.+|+.++..+..+|.. ..++.|.+.||+|+|.++ ++++..+..-.+. ... ..++
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~~--~~~----~~~~ 79 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL-FGSLATFAAAAGR--LLD----PFNY 79 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHHHH--HHH----hccH
Confidence 3578888899999999999999998666666654 479999999999988875 4555444332111 111 1245
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
+.+.+.-++.|.|.+. +.++.....+||| ++||++.++......+|+.+-..+...+.+.
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------------------ 140 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------------------ 140 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence 5566666667777774 4455555678887 5799999999888888875544222221100
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
.+-+..|. ..++.. ++... +.... +
T Consensus 141 --------------~gWr~~f~---~~~~l~----~~~~~-------------------~~~~~------l--------- 165 (368)
T TIGR00903 141 --------------GGLQLLII---PIAAVA----AAGII-------------------LVLAA------L--------- 165 (368)
T ss_pred --------------cchHHHHH---HHHHHH----HHHHH-------------------HHHHH------c---------
Confidence 01111111 111000 00000 00000 0
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
.|+| + +++ + . .+.++. ...++|.+|++++|
T Consensus 166 -----p~~p-~-~~~---------~-----------~--------------------~~~~~~---~~~~~~ll~~~~~~ 195 (368)
T TIGR00903 166 -----PALP-F-QAA---------E-----------G--------------------FGFKDA---VKEFGALAGRKDLW 195 (368)
T ss_pred -----CCCC-C-CCC---------C-----------C--------------------cchHHH---HHHHHHHHcChhHH
Confidence 0010 0 000 0 0 000000 01357899999999
Q ss_pred HHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCI 450 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i 450 (547)
.+++..++....-..+.+-+.+++++.|++.. ++...++..+... +..++++||+.||.+ |........+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~~r~~~--r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 196 IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL---IGVAVIPDRVARAGL--RSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH---HHHHHhhHHhhhhhh--HHHHHHHHHHHHHH
Confidence 99999888877766666678888888887643 4444455555444 556999999876421 22222222333333
Q ss_pred HHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 451 GHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 451 ~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
..+++.... .........+.++..+..+.++.++++|.|..++-|+-.|+.....-+++ +..+.+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~-~~~~~~~~~~~ 340 (368)
T TIGR00903 270 FFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAIS-VALALAAMLFI 340 (368)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHH-HHHHHHHHHHh
Confidence 333333222 22233344566777777778888999999999999999999877666666 34455565554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-14 Score=154.65 Aligned_cols=357 Identities=14% Similarity=0.116 Sum_probs=209.2
Q ss_pred ccccccccccHHHHHHhCCC---hhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040453 51 GATYMFSLYSGDIKYALGYD---QTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKI 126 (547)
Q Consensus 51 Gt~Y~fSiys~~L~~~~~~s---qs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i 126 (547)
+-.|.++.+.+++++++|++ ..+..++.....+|..+ .++.|.+.||+|+|.+++++.++..++.++..+ .
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-----~ 177 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-----S 177 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----c
Confidence 45577778899999999999 88888877777777765 689999999999999999999888887665432 2
Q ss_pred cCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 040453 127 ARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLP 205 (547)
Q Consensus 127 ~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p 205 (547)
++++.+.++-++.|.+.+.....+.....+++|. +||.+.++...+++++..+.. +...+..+ -+..++..+ .|
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~-wr~~~~~~~-i~ 252 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP-LVAYFIPD-WRWLQLAVS-LP 252 (505)
T ss_pred --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhH-HHHHHHHHH-HH
Confidence 3466676677778888888888888889999975 599999988777666654433 32222221 111111111 12
Q ss_pred HHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHh
Q 040453 206 AAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEF 285 (547)
Q Consensus 206 ~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~ 285 (547)
.++.++...+++ +. .++. . .+.
T Consensus 253 ~~~~~~~~~~~~---es------p~~l---~--------------------------------------------~~~-- 274 (505)
T TIGR00898 253 TFLFFLLSWFVP---ES------PRWL---I--------------------------------------------SQG-- 274 (505)
T ss_pred HHHHHHHHHhcC---CC------hHHH---H--------------------------------------------HCC--
Confidence 111111111110 00 0000 0 000
Q ss_pred hhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhc
Q 040453 286 KLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALF 365 (547)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~ 365 (547)
..+++++..+ +..+.+. .+. ++ +..+. +.+ +..+.++ ...+.++.+|
T Consensus 275 -~~~~a~~~l~----~~~~~~~------~~~---~~--------~~~~~--~~~-------~~~~~~~--~~~~~~~l~~ 321 (505)
T TIGR00898 275 -RIEEALKILQ----RIAKING------KKL---PA--------EVLSL--SLE-------KDLSSSK--KQYSFLDLFR 321 (505)
T ss_pred -CHHHHHHHHH----HHHHHcC------CCC---CH--------HHHhh--hhh-------hhhhhcc--CCCcHHHHhC
Confidence 0000000000 0000000 000 00 00000 000 0000001 1346789999
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
++++|...+.+.+.........+........++.+ ......+.++....|+++.++++||++|| ..+.+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr------~~~~~~~ 392 (505)
T TIGR00898 322 TPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASL 392 (505)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHH
Confidence 99999887766554443222222222222333332 22334566778889999999999988754 3444555
Q ss_pred HHHHHHHHHHHhhccc--h-HHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHH
Q 040453 446 LLSCIGHLLIAFNVPG--G-LYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 446 ~~~~i~~lll~~~~~~--~-l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
++.+++.+++...... . .....++.+++.++.+.+...+++|.|..++-++-.|+......+|+ +++|.+.+
T Consensus 393 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~-~i~p~i~~ 467 (505)
T TIGR00898 393 LLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVY 467 (505)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHH-HHHhHHHH
Confidence 5555555544443322 2 33455677788888889999999999999999999999888888887 66787777
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=148.23 Aligned_cols=328 Identities=13% Similarity=-0.010 Sum_probs=186.9
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHH-HhccccCchH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLA-VTKKIARPQV 131 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~-~~g~i~~~~~ 131 (547)
...++....+++++|+|.+|+..+..+..++.. ..++.|.+.||+|+|.++++|.+...++...+.++ ........++
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF 112 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence 334555556889999999999997666566654 58999999999999999998888766554322111 1111111345
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
+.+.+.-.+.|.+.+...++......+++| ++||++.++......++..+-..+ ..+...
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~-~~~l~~------------------ 173 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL-GLLLHS------------------ 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH-HHHHHh------------------
Confidence 555555566777777777777777778886 689999998655444433222211 111000
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
...+. ...+...+.. ++.+++ .+
T Consensus 174 -----------------~~g~~---~~~~~~~~~~-----------------------~~~~~~------~~-------- 196 (392)
T PRK12382 174 -----------------HFGFA---ALALTTMVLP-----------------------LLAWAF------NG-------- 196 (392)
T ss_pred -----------------ccChH---HHHHHHHHHH-----------------------HHHHHH------HH--------
Confidence 00011 0000000000 000000 00
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
..|+ + ++ + + . +++ +.++.+| .+|
T Consensus 197 -----~~~~-~--~~---------------------~--~-----------------~-~~~------~~~~~~~--~~~ 219 (392)
T PRK12382 197 -----TVRK-V--PA---------------------H--A-----------------G-ERP------SLWSVVG--LIW 219 (392)
T ss_pred -----hccC-C--CC---------------------C--c-----------------c-cCc------hHHHHHH--HHH
Confidence 0010 0 00 0 0 0 000 1122222 233
Q ss_pred HHHHHHHHhhhchhe-eecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLT-AIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~-~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
...+..++. +.+.. +........++.+.+ +.....+..++++..+++..|++.||+++|+ . +.....+.+
T Consensus 220 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~--~~~~~~~~~ 290 (392)
T PRK12382 220 KPGLGLALQ-GVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK----V--AIVSLLVET 290 (392)
T ss_pred HhHHHHHHH-HHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe----e--hHHHHHHHH
Confidence 322221111 11111 122233445555553 3455667788899999999999999887542 1 222333444
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 450 IGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 450 i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++.+++..... ..+++..++.|+++|.........+.|.+..|+.|+.+|+......+|. .+++.+.|.+.|+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~ig~~~~g~l~~~~ 365 (392)
T PRK12382 291 VGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY-GVSGPLAGMLATSF 365 (392)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 44444333322 2344567889999999888888999999999999999999988888876 66788999999865
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=143.09 Aligned_cols=349 Identities=13% Similarity=0.021 Sum_probs=198.9
Q ss_pred ccccccccHHHHHHhCC--ChhhhHHHHHHHHhhh------hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 040453 53 TYMFSLYSGDIKYALGY--DQTTLNLLSFFKDLGA------NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTK 124 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~--sqs~l~~is~~~~vG~------~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g 124 (547)
.|.++..++.+++++.+ ++.+..++.+...++. ...++.|.+.||+|+|.++.++.++..++..+..+.-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-- 86 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLP-- 86 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCC--
Confidence 35677788888888765 3344444322222221 2358999999999999999999999988877654321
Q ss_pred cccCch---HHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHH
Q 040453 125 KIARPQ---VWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILF 200 (547)
Q Consensus 125 ~i~~~~---~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllf 200 (547)
...... .+.+++.-++.|.+.+....++.....+++| ++||.+.++......++..+-..+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~--------- 157 (394)
T TIGR00883 87 SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY--------- 157 (394)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 110001 1224445566777777777778888889996 579999998877766665544422211100
Q ss_pred HHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhh
Q 040453 201 IGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVV 280 (547)
Q Consensus 201 la~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~ 280 (547)
. +. .+ .-+....+..+.+ .++..++. .+ . ...
T Consensus 158 ---------~-----~~---~~--~~~~~~w~~~~~~---~~~~~~~~--------------------~~---~---~~~ 189 (394)
T TIGR00883 158 ---------L-----LG---DD--ALLEWGWRIPFLV---SAVLVLIG--------------------LY---L---RRN 189 (394)
T ss_pred ---------h-----cC---HH--HhhccchHHHHHH---HHHHHHHH--------------------HH---H---HHh
Confidence 0 00 00 0000001100000 00000000 00 0 000
Q ss_pred hhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcH
Q 040453 281 VIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTI 360 (547)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~ 360 (547)
.+ +++ + .++ +++ + +++ ...+.
T Consensus 190 ~~--------------~~~-~-~~~--------------~~~----~----------------------~~~---~~~~~ 210 (394)
T TIGR00883 190 LE--------------ETP-V-FEK--------------AQE----K----------------------HKK---KRGPI 210 (394)
T ss_pred cC--------------CCh-h-HHH--------------HHh----c----------------------ccc---ccCCH
Confidence 00 000 0 000 000 0 000 01234
Q ss_pred HHhhccHH--HHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 361 LQALFSLD--MLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 361 ~q~l~t~~--Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
++.+|+++ +|......++..............+. ++.|.++.+.+...++..+.+.++++..|+++||++|| |
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----~ 286 (394)
T TIGR00883 211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR----P 286 (394)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----H
Confidence 56666655 77776665554444444445566666 45788777788888999999999999999999998765 2
Q ss_pred hHHHHHHHHHHHHHHHH-HHhh--ccc-hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHH
Q 040453 438 PLMLTIILLLSCIGHLL-IAFN--VPG-GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLL 512 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~ll-l~~~--~~~-~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l 512 (547)
..+....+..+.+..+ .... ... .+.+...+.|+++|..+....+++.|.+..++-++-+++. .++..+|+ .+
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~-~~ 364 (394)
T TIGR00883 287 -VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG-GF 364 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh-hH
Confidence 2221222222222111 1111 122 2344567889999999999999999999998889988874 45556666 56
Q ss_pred HHHHHHHHhHHHH
Q 040453 513 NVRVAGHLYDKEA 525 (547)
Q Consensus 513 ~~~l~G~~yd~~~ 525 (547)
+|.+.|.++|+..
T Consensus 365 ~p~~~g~l~~~~g 377 (394)
T TIGR00883 365 APYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHcC
Confidence 7889999998754
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=146.09 Aligned_cols=329 Identities=14% Similarity=0.095 Sum_probs=194.6
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
+..+..-|.+++++|+|.+|.+.+.....++..+ .++.|.+.||+|+|.++.++.++..++..+.... +++|
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence 3555577899999999999999876666777754 6899999999999999999999988887654321 3456
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFA 211 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li 211 (547)
.+.+.-++.|.+.+...........+++|+ +|+.+.++......++..+-..+...+.+.
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------------- 153 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE------------------- 153 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-------------------
Confidence 666666666766665544555556788976 689998887766666654433222211110
Q ss_pred hhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhh
Q 040453 212 FLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSK 291 (547)
Q Consensus 212 ~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~ 291 (547)
.+-+..|. .. ++..++. .+.. ..
T Consensus 154 -------------~gwr~~f~---~~----~~~~~~~--------------------~~~~-----~~------------ 176 (382)
T PRK10091 154 -------------FSWRYTFL---LI----AVFNIAV--------------------LASI-----YF------------ 176 (382)
T ss_pred -------------ccHHHHHH---HH----HHHHHHH--------------------HHHH-----HH------------
Confidence 00011111 10 0000000 0000 00
Q ss_pred hhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHH
Q 040453 292 QMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLI 371 (547)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwl 371 (547)
..|+ ..++ + + .+. ....+.+|++++|.
T Consensus 177 ----~lp~--~~~~----------~----------~----------------------~~~-----~~~~~~~~~~~~~~ 203 (382)
T PRK10091 177 ----WVPD--IRDE----------A----------K----------------------GGL-----REQFHFLRSPAPWL 203 (382)
T ss_pred ----hCCC--CCcc----------c----------c----------------------cCH-----HHHHHHhcChHHHH
Confidence 0010 0000 0 0 000 01235678999999
Q ss_pred HHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHH
Q 040453 372 LFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCI 450 (547)
Q Consensus 372 l~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i 450 (547)
++...++.........+...+..++ .|.++.+.+...++.++++.+||+..|+++||+++| ..+.+...++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~------~~~~~~~~~~~i 277 (382)
T PRK10091 204 IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL------RIAAVTDFIIVL 277 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch------hHHHHHHHHHHH
Confidence 8876665543332333344455554 788888888999999999999999999999987643 233444455555
Q ss_pred HHHHHHh-hcc-chHHHHHHHHHhhhccchh-hHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhh
Q 040453 451 GHLLIAF-NVP-GGLYVASIIIGFCFGAQWP-LVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 451 ~~lll~~-~~~-~~l~~~~~liG~~~G~~~~-~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~ 527 (547)
+.+++.. ... ....+...+.++++++... .....+.+.++.|+.+...+ .....+|. .+++.+.|.++|+....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~-~~Gp~~~G~l~~~~~~~ 354 (382)
T PRK10091 278 ALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGS-AIGAYCGGMMLTLGLAY 354 (382)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHH-HHHHHHhHHHHHcccCc
Confidence 5543322 221 2223344455555544333 23345666677677776422 23345665 66788999999975444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=146.29 Aligned_cols=385 Identities=12% Similarity=0.039 Sum_probs=215.4
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
..+.++.+-|.+.+++|+|+.+..++.....++. ...++.|++.||+|+|.+++++.++..+++.+..+ . .+
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~--~~ 97 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL-----S--GT 97 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-----h--CC
Confidence 3456667788889999999999888755555664 35789999999999999998888888877765322 1 23
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCC-chHHHHHHHHHHHHH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDD-TKSLILFIGWLPAAI 208 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~-~~~fllfla~~p~~v 208 (547)
.+.+.+..++.|.+.+...........+++|+ +||.+.|+......++..+-..+...+.+.. -+.-++.......+.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 55555556666777666666666667889986 5799999887666666655444443333221 111222222222222
Q ss_pred HHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhh
Q 040453 209 SFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLW 288 (547)
Q Consensus 209 ~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~ 288 (547)
.++.... .|..+.++....+...... ......+... .+..... ...........+.. ...+.....
T Consensus 178 ~~~~~~~---~~~~~~~~~r~~~~~~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~------ 243 (471)
T PRK10504 178 AIATLML---MPNYTMQTRRFDLSGFLLL--AVGMATLTLA-LDGSKGL-GLSPLAIAGLVAVG-VVALLLYLL------ 243 (471)
T ss_pred HHHHHHh---CCCccccCCCCChHHHHHH--HHHHHHHHHH-HhcCCcC-CcchHHHHHHHHHH-HHHHHHHHH------
Confidence 2221111 1221111100011100000 0111111111 1111000 00000000000000 000000000
Q ss_pred hhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHH
Q 040453 289 KSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLD 368 (547)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~ 368 (547)
+++ .+ ++| .-..+.+|+++
T Consensus 244 ~~~-----~~---------------------------------------------------~~~-----~~~~~l~~~~~ 262 (471)
T PRK10504 244 HAR-----NN---------------------------------------------------NRA-----LFSLKLFRTRT 262 (471)
T ss_pred HHh-----cC---------------------------------------------------CCC-----ccCHHHhcccc
Confidence 000 00 000 01134788999
Q ss_pred HHHHHHHHHHhhhchheeecch-hhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 369 MLILFFATICGVGGTLTAIDNL-GQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 369 Fwll~~~~~~~~g~Gl~~i~n~-~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
|++..+..++..... ...++. ....+ ..|.++.+.+.......+....++++.|.++||++|| + .+....+
T Consensus 263 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----~--~~~~~~~ 335 (471)
T PRK10504 263 FSLGLAGSFAGRIGS-GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----R--VLVATTL 335 (471)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----H--HHHHHHH
Confidence 999877666554332 333333 33444 3687777777888888888999999999999988654 2 3333444
Q ss_pred HHHHHHHHHHhhc-cc---hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 447 LSCIGHLLIAFNV-PG---GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 447 ~~~i~~lll~~~~-~~---~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
+.+++.+++.... .. .+.+..++.|++.|..+.....++.+.+..++.|..+++..+..-+|. .+++.+.|.++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~ig~~i~g~ll~ 414 (471)
T PRK10504 336 GLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSM-SIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4444443333221 11 123456778888988888999999999999999999999887777776 567777888777
Q ss_pred HHHh
Q 040453 523 KEAK 526 (547)
Q Consensus 523 ~~~~ 526 (547)
.-..
T Consensus 415 ~~g~ 418 (471)
T PRK10504 415 LFGQ 418 (471)
T ss_pred Hhhh
Confidence 6544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=146.65 Aligned_cols=357 Identities=12% Similarity=-0.038 Sum_probs=207.4
Q ss_pred hhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVL 110 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl 110 (547)
.++.|+..+...+.+++... ...+...-+++++++|+|+.+++.+.....++.. ..++.|.+.||+|+|.+++++.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45566666665555554332 3334444577899999999999987666666664 478999999999999999999988
Q ss_pred HHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 111 NFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 111 ~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
..++..+.... .+.+.+.....+.|.+.+...........++||++ |+.+.++......++..+-..+...+
T Consensus 88 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 88 FILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886655332 23455555555666666666556666677899864 66777776665555433222111111
Q ss_pred hCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHH
Q 040453 190 YGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIV 269 (547)
Q Consensus 190 f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~ 269 (547)
.+. .+.+..|. .. ++..++... .
T Consensus 161 ~~~--------------------------------~~w~~~~~---~~----~~~~~~~~~------------------~ 183 (406)
T PRK15402 161 IHV--------------------------------LPWRGMFV---LF----AALAALSFF------------------G 183 (406)
T ss_pred HHc--------------------------------cCccHHHH---HH----HHHHHHHHH------------------H
Confidence 100 01111111 11 000000000 0
Q ss_pred HHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCC
Q 040453 270 MFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCF 349 (547)
Q Consensus 270 i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (547)
+ ... .|+ ..++ + + + +.
T Consensus 184 ~-------~~~----------------~~~--~~~~---------~-----~-----~--------------------~~ 199 (406)
T PRK15402 184 L-------WRA----------------MPE--TAGR---------V-----G-----E--------------------KL 199 (406)
T ss_pred H-------HHh----------------CCC--CCcc---------c-----c-----c--------------------cc
Confidence 0 000 010 0000 0 0 0 00
Q ss_pred CCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhh
Q 040453 350 SPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI 428 (547)
Q Consensus 350 ~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~ 428 (547)
+..+. ..+.++.+|++++|.+.+.+.+..............+.+ .+|.++.+.+.......++..+|++..|+++||
T Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r 277 (406)
T PRK15402 200 SLKEL--GRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR 277 (406)
T ss_pred cHHHH--HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 113467889999999887765544332233333344443 477776666666677778899999999999998
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc
Q 040453 429 FLAKYKFPRPLMLTIILLLSCIGHLLIAFNV------PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502 (547)
Q Consensus 429 l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~------~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~ 502 (547)
+++| ..+.+..++.+++.+++.... ...+.++.++.|++.|.........+...- .++.|+-.+.+.
T Consensus 278 ~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 350 (406)
T PRK15402 278 RPLR------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMG 350 (406)
T ss_pred cCHH------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHH
Confidence 7654 233344444555554433211 123445678888888887765544443332 367888888887
Q ss_pred cchhhHHHHHHHHHHHHHhHHHHhh
Q 040453 503 AASPLGSYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 503 ~~~~~gs~~l~~~l~G~~yd~~~~~ 527 (547)
+...++. .+++.+.+.+||+....
T Consensus 351 ~~~~~~~-~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 351 MLSMLIF-TVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHHHH-HHHHHHHHhcccCCchH
Confidence 7777776 67788999999876554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-14 Score=146.37 Aligned_cols=353 Identities=16% Similarity=0.156 Sum_probs=229.0
Q ss_pred cHHHHHHHHHHH-HhhccccccccccHHHHHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIM-AAAGATYMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGANVGILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 36 Rw~~l~a~~~v~-l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
++..|..+++.- +|--.=+.||.-.+++++.+|+|..|..++ ++-...|+.+=++.|++.||+|||....++.++..+
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I 91 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI 91 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence 344555544443 333334678888899999999999999986 677778888899999999999999999999988766
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
=.+ |+.+.... +++|++.+...+.|.+.+ ....++....+|||+ ++|++.||--.+ =++.++-..
T Consensus 92 P~~--~~~~a~~~--~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~G-N~G~av~q~-------- 157 (417)
T COG2223 92 PCL--GLAFAVTY--PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAG-NLGVAVAQL-------- 157 (417)
T ss_pred HHH--HHHHHccC--CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccc-cccHHHHHH--------
Confidence 643 44555444 456777777766666544 335788888999985 689999998743 244433331
Q ss_pred CchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHH
Q 040453 193 DTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFL 272 (547)
Q Consensus 193 ~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~l 272 (547)
+.|.++...+.- .... +..+|.....+. .+..
T Consensus 158 ----------~~P~v~~~~g~~--------------~w~~-------~~~i~~~~l~v~-----------------~v~~ 189 (417)
T COG2223 158 ----------VAPLVAVAFGFL--------------AWRN-------VAGIYVVALAIA-----------------AVLA 189 (417)
T ss_pred ----------HHHHHHHHHhhH--------------HHHH-------HHHHHHHHHHHH-----------------HHHH
Confidence 113333222110 0000 001111111000 0000
Q ss_pred HhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCC
Q 040453 273 LFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPP 352 (547)
Q Consensus 273 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 352 (547)
++ . . +|.| +. ++ + .++
T Consensus 190 ~~---~--~--------------~d~p-~~-r~---------------------~----------------------~~~ 205 (417)
T COG2223 190 WL---G--M--------------NDVP-EH-RA---------------------S----------------------VKP 205 (417)
T ss_pred HH---H--h--------------CCCh-hh-hc---------------------c----------------------ccc
Confidence 00 0 0 1110 00 00 0 001
Q ss_pred CCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhh
Q 040453 353 DRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLA 431 (547)
Q Consensus 353 ~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~ 431 (547)
.. +...+...|++|-|.+.+-++..-|+=..+.+-+++..++ .|.+..+++....+....+.+-|...|+||||++.
T Consensus 206 ~~--~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg 283 (417)
T COG2223 206 QL--PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGG 283 (417)
T ss_pred cc--hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccc
Confidence 11 0123556779999999999999888888888888888886 68888888899999999999999999999998874
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHhhc------c-ch-----HHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcc
Q 040453 432 KYKFPRPLMLTIILLLSCIGHLLIAFNV------P-GG-----LYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYN 499 (547)
Q Consensus 432 r~~~~r~~~l~~~~~~~~i~~lll~~~~------~-~~-----l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg 499 (547)
+ | .+.+.+..++++..++.... . .. +....+..|++.|+.+-+.|.+-. |+.|.-=|
T Consensus 284 ~----r--v~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-----~~~G~v~G 352 (417)
T COG2223 284 R----R--VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-----KETGAVTG 352 (417)
T ss_pred h----h--HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-----hhhhHHHH
Confidence 3 2 34444455555554443322 1 11 223457789999999999888876 47888888
Q ss_pred hhccchhhHHHHHHHHHHHHHhHHHHhhc
Q 040453 500 FGGAASPLGSYLLNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 500 ~~~~~~~~gs~~l~~~l~G~~yd~~~~~~ 528 (547)
++.....+|.+.+ |..+|..||.-...+
T Consensus 353 ~vga~G~lGGf~l-p~~~g~~~~~tg~~~ 380 (417)
T COG2223 353 IVGAIGGLGGFFL-PLAFGVSLDLTGSYT 380 (417)
T ss_pred HHHHhccccccch-hHHHHHHHHhcccHH
Confidence 8888888888554 778999998876443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=150.15 Aligned_cols=158 Identities=18% Similarity=0.109 Sum_probs=103.5
Q ss_pred HHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh----cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCC
Q 040453 360 ILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS----LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKF 435 (547)
Q Consensus 360 ~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a----~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~ 435 (547)
.++.+|++.+|.+.+.+++.......+.........+ .+.+..+.+...++..+.+.++.+..|+++||+++|+
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-- 293 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-- 293 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--
Confidence 4568899999987665444333222222233333332 3444445567778888999999999999999998652
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcch-hccchhhHHHHHH
Q 040453 436 PRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF-GGAASPLGSYLLN 513 (547)
Q Consensus 436 ~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~-~~~~~~~gs~~l~ 513 (547)
.+....++..++.+++.... +..+++...+.|+.++......-..+.|.++.|+.++.|+. ......+|. +++
T Consensus 294 ----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~-~ig 368 (420)
T PRK09528 294 ----ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA-VFL 368 (420)
T ss_pred ----hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH-HHH
Confidence 23333444455544444332 23344556777877777666666788999999999988876 345556666 667
Q ss_pred HHHHHHHhHHH
Q 040453 514 VRVAGHLYDKE 524 (547)
Q Consensus 514 ~~l~G~~yd~~ 524 (547)
+.+.|.++|..
T Consensus 369 ~~~~G~l~~~~ 379 (420)
T PRK09528 369 STLAGNLYDSI 379 (420)
T ss_pred HHHHHHHHHhh
Confidence 88999999975
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=145.45 Aligned_cols=347 Identities=16% Similarity=0.089 Sum_probs=195.8
Q ss_pred cHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFG 114 (547)
Q Consensus 36 Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~G 114 (547)
.|..+..++..++...+.+.+.-.-+++++++|+|.+++..+.....++.. ..++.|.+.||+|+|.++.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 345555555555544444555555566789999999999998766677765 5799999999999999999999888887
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHHhCCC
Q 040453 115 YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAFYGDD 193 (547)
Q Consensus 115 y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~ 193 (547)
..+.... .+++.+++...+.|.+.+...........++||++ |+.+.+......++++.+-..+...+.+.
T Consensus 85 ~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~- 156 (401)
T PRK11043 85 SLGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH- 156 (401)
T ss_pred HHHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6654321 24555555445555555444333444456889875 56666665555555544333222111100
Q ss_pred chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 040453 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273 (547)
Q Consensus 194 ~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll 273 (547)
.+.+..|. .. ++..++... + .+
T Consensus 157 -------------------------------~g~~~~~~---~~----~~~~~~~~~-------------------~-~~ 178 (401)
T PRK11043 157 -------------------------------FGWQAIFA---TL----FAITLLLIL-------------------P-TL 178 (401)
T ss_pred -------------------------------CChHHHHH---HH----HHHHHHHHH-------------------H-HH
Confidence 00011111 00 000000000 0 00
Q ss_pred hhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCC
Q 040453 274 FFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPD 353 (547)
Q Consensus 274 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
. . .+++ .++ + +++
T Consensus 179 ~------~--------------~~~~---~~~---------------------~----------------------~~~- 191 (401)
T PRK11043 179 R------L--------------KPSK---KAR---------------------K----------------------QSQ- 191 (401)
T ss_pred H------c--------------CCCC---Ccc---------------------c----------------------cch-
Confidence 0 0 0000 000 0 000
Q ss_pred CCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 354 ~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
+..+.++.+|++++|...+.+.+....-..+.+....+.++.|.++.+.+.......++..+|++..+++.||+++|+
T Consensus 192 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 192 --DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred --HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 012467889999999877665554443334444555666778887777777677778888899999999999876542
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhh-cc--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHH
Q 040453 434 KFPRPLMLTIILLLSCIGHLLIAFN-VP--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSY 510 (547)
Q Consensus 434 ~~~r~~~l~~~~~~~~i~~lll~~~-~~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~ 510 (547)
.. ....+...+..+...++... .+ ..+.+...+.|+++|..+.+......|.+. ++-|+..|+..+....++
T Consensus 270 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~- 344 (401)
T PRK11043 270 LL---PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLC- 344 (401)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHH-
Confidence 11 12222222222332222221 11 123345677888888888887777777774 677887887755444343
Q ss_pred HHHHHHHHHHhH
Q 040453 511 LLNVRVAGHLYD 522 (547)
Q Consensus 511 ~l~~~l~G~~yd 522 (547)
..++.+.|.+.|
T Consensus 345 ~~~~~~~g~l~~ 356 (401)
T PRK11043 345 FLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHccC
Confidence 334456666655
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=157.91 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=110.3
Q ss_pred hccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHH
Q 040453 34 TGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 34 ~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
+.+|.+++...+..+..|. ....+..-|.+++++|++..+..++..+..+|..+ .+++|.+.||+|+|.+++++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4457776666666665554 23466778889999999999999887777777764 689999999999999999998888
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHH
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
.++.++..++ .+++.+.++-++.|++.+.....+.....+++|. +||.+.+++..+..+++.+-..+..
T Consensus 243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776554322 2355556666667777777667777778889985 6999999998888888766554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=143.97 Aligned_cols=347 Identities=13% Similarity=0.121 Sum_probs=208.8
Q ss_pred cHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFG 114 (547)
Q Consensus 36 Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~G 114 (547)
+|+.+....+..+.... .|+..+..+++++|+|..++..+.....+.. ..+++.|.+.||+|+|.++.++.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~ 89 (400)
T PRK11646 12 KYFLLIDNMLVVLGFFV--VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAG 89 (400)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHH
Confidence 47777777777766644 4677777899999999999998755544554 45799999999999999999999999888
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCC
Q 040453 115 YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193 (547)
Q Consensus 115 y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~ 193 (547)
..++... .++|.++....+.+.+.+....+......+++| ++||.+.|+......++..+-..+...+..-
T Consensus 90 ~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~- 161 (400)
T PRK11646 90 FATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY- 161 (400)
T ss_pred HHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7765321 345666665566666666665566666778886 5899999998777666654433322222100
Q ss_pred chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 040453 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273 (547)
Q Consensus 194 ~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll 273 (547)
+-+..|. .. ++..++..+ +..+
T Consensus 162 --------------------------------g~~~~f~---~~----~~~~~~~~i-------------------~~~~ 183 (400)
T PRK11646 162 --------------------------------DFRLVCA---TG----AVLFVLAAA-------------------FNAW 183 (400)
T ss_pred --------------------------------hHHHHHH---HH----HHHHHHHHH-------------------HHHH
Confidence 0000111 00 000000000 0000
Q ss_pred hhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCC
Q 040453 274 FFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPD 353 (547)
Q Consensus 274 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
. .|+.+ +++ + +++.
T Consensus 184 ~----------------------~~~~~-~~~---------------------~----------------------~~~~ 197 (400)
T PRK11646 184 L----------------------LPAYK-LST---------------------V----------------------RTPV 197 (400)
T ss_pred h----------------------CCccc-ccc---------------------c----------------------chhh
Confidence 0 01000 000 0 0000
Q ss_pred CCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 354 ~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
..++++.+|+++||.+.+.++........+........++.+.++.+.+...++.++....+....+...|+ |+
T Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~ 271 (400)
T PRK11646 198 ---REGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEK---RF 271 (400)
T ss_pred ---HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hc
Confidence 013567889999987655443322222222233445556666666666666666666655444444444452 22
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHH
Q 040453 434 KFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLL 512 (547)
Q Consensus 434 ~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l 512 (547)
+..| .+....++.+++.+++..... ..+.+..++.|++.+......++++.|....++.|+-+|+..+...+|. .+
T Consensus 272 ~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~i 348 (400)
T PRK11646 272 RLEH--RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG-AI 348 (400)
T ss_pred chhH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH-Hh
Confidence 2222 223344445555544443322 2234455778888888888889999999999999999999988888877 67
Q ss_pred HHHHHHHHhHHHH
Q 040453 513 NVRVAGHLYDKEA 525 (547)
Q Consensus 513 ~~~l~G~~yd~~~ 525 (547)
++.+.|.++|+..
T Consensus 349 g~~l~G~l~~~~~ 361 (400)
T PRK11646 349 GYIGGGWLFDLGK 361 (400)
T ss_pred cccchHHHHHHHh
Confidence 8899999999853
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-13 Score=142.60 Aligned_cols=377 Identities=12% Similarity=0.100 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 36 RWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 36 Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
.++-++.-..+...-|.. -.-+.+-|++++.+|+|.+|...+.+...+|.. ..++.|.+.||+|+|.++.+|.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344333333333333332 445667899999999999999998776677765 489999999999999999999999999
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCc-chhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRG-VVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG-~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
|..++..+ .. .++++.+.+..++.|.|.+..++++-....++.|++|+ ...++..+++.+++.+=..+...+...
T Consensus 104 ~~~l~~~~--~~--a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 104 GAALFWPA--AE--IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHH--Hh--cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98764321 11 24566666677777888888877777766677777665 578888888888765544333222100
Q ss_pred CchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhH---HHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHH
Q 040453 193 DTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFY---NFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIV 269 (547)
Q Consensus 193 ~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~---~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~ 269 (547)
+.. +..... ..+..+.+. .+-...+. +..+..+ ..+..++. +
T Consensus 180 ~~~---------~~~~~~----~~~l~~~~~-~~w~~~~~~~w~~~f~~~-~~v~~~~~--------------------~ 224 (438)
T PRK10133 180 NVP---------HQSQDV----LDKMTPEQL-SAYKHSLVLSVQTPYMII-VAIVLLVA--------------------L 224 (438)
T ss_pred CCc---------ccchhh----hhccChhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHH--------------------H
Confidence 000 000000 000000000 00000000 0001000 00000000 0
Q ss_pred HHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCC
Q 040453 270 MFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCF 349 (547)
Q Consensus 270 i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (547)
+ +.. . ..|+.+.+++ +++ .
T Consensus 225 ~-~~~-------~-------------~~p~~~~~~~--------------~~~-------------------------~- 243 (438)
T PRK10133 225 L-IML-------T-------------KFPALQSDNH--------------SDA-------------------------K- 243 (438)
T ss_pred H-HHH-------h-------------cCCCCCcccc--------------ccc-------------------------c-
Confidence 0 000 0 0010000000 000 0
Q ss_pred CCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhh
Q 040453 350 SPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSE 427 (547)
Q Consensus 350 ~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD 427 (547)
+.+. -.+.++.+|+++||...+..++..+.-....+-..+. .+ ..|.++.+++.......++..+||+..|++.|
T Consensus 244 ~~~~---~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~ 320 (438)
T PRK10133 244 QGSF---SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS 320 (438)
T ss_pred ccch---hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0123577899999987776555544433222333333 34 46888888999999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhh
Q 040453 428 IFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 428 ~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~ 507 (547)
|+++| | .+....++.++++++....+....+...++.|++.|..+...-+...|.++ |+-++-=+++.... +
T Consensus 321 r~g~~----~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~~~-~ 392 (438)
T PRK10133 321 RFAPH----K--VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTI-I 392 (438)
T ss_pred HcCHH----H--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhHHh-c
Confidence 88754 2 233333333334333333222223446789999999999999999999987 45555555544322 3
Q ss_pred HHHHHHHHHHHHHhHHH
Q 040453 508 GSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~ 524 (547)
|. .+.+.+.|.+.|+.
T Consensus 393 g~-~~~~~i~G~l~~~~ 408 (438)
T PRK10133 393 GG-GIVTPVMGFVSDAA 408 (438)
T ss_pred cc-hHHHHHHHHHHHhc
Confidence 44 33456888888764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=144.46 Aligned_cols=334 Identities=10% Similarity=0.009 Sum_probs=181.4
Q ss_pred hhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040453 49 AAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIA 127 (547)
Q Consensus 49 ~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~ 127 (547)
..|....+...++.+++++|+|..++.++.....++. ...++.|.+.||+|+|.+++++.++..+++.++.+.
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------ 93 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------ 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------
Confidence 4455555666778899999999999999755444444 458999999999999999999999888887655322
Q ss_pred CchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 040453 128 RPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPA 206 (547)
Q Consensus 128 ~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~ 206 (547)
++.|.+.+..++.+.+.+....+.-....+-+| ++||++.|+.-....++.++-..+...+...
T Consensus 94 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~-------------- 158 (395)
T PRK10054 94 -NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ-------------- 158 (395)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 223433332223332322222222233345565 4689999988777666554333222111100
Q ss_pred HHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhh
Q 040453 207 AISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFK 286 (547)
Q Consensus 207 ~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~ 286 (547)
+.+..|. .. ++..++..+ .+ ...++
T Consensus 159 -------------------g~~~~f~---~~----~~~~~i~~i------------------~~-------~~~~~---- 183 (395)
T PRK10054 159 -------------------SINLPFW---LA----AICSAFPLV------------------FI-------QIWVQ---- 183 (395)
T ss_pred -------------------ccCcHHH---HH----HHHHHHHHH------------------HH-------HHHHh----
Confidence 0111222 11 000000000 00 00000
Q ss_pred hhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhcc
Q 040453 287 LWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFS 366 (547)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t 366 (547)
++++ +. ++ + +++ ..+.++.+|+
T Consensus 184 ---------~~~~-~~-~~---------------------~----------------------~~~----~~~~~~~~~~ 205 (395)
T PRK10054 184 ---------RSEK-AI-AT---------------------E----------------------TGS----VWSPSVLLQD 205 (395)
T ss_pred ---------cccc-cc-cc---------------------c----------------------hhh----hhhhhhhccC
Confidence 0000 00 00 0 000 1123677899
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhh---hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGG---SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~---a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~ 443 (547)
++||.+.+..++.......+.....+... +.+.+....+...++.++.....+...|.++||..+| ..+..
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~ 279 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR------PLMTA 279 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch------hHHHH
Confidence 99998887766544333223333333332 2333333344555666666666666667777754322 23344
Q ss_pred HHHHHHHHHHHHHhhc-c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 444 ILLLSCIGHLLIAFNV-P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 444 ~~~~~~i~~lll~~~~-~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
..++..++.+++.... . ..+.+..++.|++++.........+.+.-..+.-|+-|+.... ..+|. .++|.+.|.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~-~~~G~-~~Gp~~~G~l~ 357 (395)
T PRK10054 280 GTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSL-GWLGA-AINPLVSGVIL 357 (395)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHH-HHHHH-HHHHHHHHHHH
Confidence 4455555554444321 1 2234567788888877666666777777766676777775442 32455 66888999999
Q ss_pred HHH
Q 040453 522 DKE 524 (547)
Q Consensus 522 d~~ 524 (547)
|+-
T Consensus 358 ~~~ 360 (395)
T PRK10054 358 TTL 360 (395)
T ss_pred HHc
Confidence 975
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=139.45 Aligned_cols=360 Identities=10% Similarity=0.039 Sum_probs=194.8
Q ss_pred ccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHH-HHHHHhhh-h-----hhchhhhhhccCCcHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGA-N-----VGILSGLINEITPPWVVLVL 106 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~-~-----~gi~~G~l~D~~Gp~~~l~i 106 (547)
.||+......+..++... ...++.+.|+++++++.++.|...+ .+...++. + ..++.|.+.||+|+|.++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 455544333333444443 3568899999999999988876442 22222222 2 25788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCchHH--------HHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhh
Q 040453 107 GAVLNFFGYFMIWLAVTKKIARPQVW--------HMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGL 177 (547)
Q Consensus 107 G~vl~~~Gy~l~~l~~~g~i~~~~~~--------~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GL 177 (547)
+.++..++..++.+ .+ +++ .+++.-++.|.+.+....++.....+||| ++||.+.++......+
T Consensus 92 ~~~~~~~~~~l~~~-----~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 92 TLSIMASGTLLIAF-----VP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHHHHHHh-----CC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence 99998888665432 22 222 23445566778877777777778889997 5799999987766544
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040453 178 SGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDF 257 (547)
Q Consensus 178 Sa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~ 257 (547)
+..+-. +...+.. ..+.... ..+.+.+..|. ..... .
T Consensus 165 g~~~g~-~~g~~l~---------------------~~~~~~~--~~~~gWr~~f~----~~~~~---~------------ 201 (434)
T PRK15075 165 AVVFAA-LLGYLLN---------------------QWLSPAQ--MAEWGWRIPFL----IGCLI---V------------ 201 (434)
T ss_pred HHHHHH-HHHHHHH---------------------HhCCHHH--HhccchHHHHH----HHHHH---H------------
Confidence 432211 1111000 0000000 00001111111 10000 0
Q ss_pred CcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCC
Q 040453 258 TRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTS 337 (547)
Q Consensus 258 s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 337 (547)
.+ + ...+. .++ |.++. .. +
T Consensus 202 -----------~~-~------~~~~~-------------~~~-e~~~~---------------~~----~---------- 220 (434)
T PRK15075 202 -----------PF-I------FLIRR-------------SLE-ETEEF---------------LA----R---------- 220 (434)
T ss_pred -----------HH-H------HHHHH-------------hcC-CCHHH---------------HH----h----------
Confidence 00 0 00000 010 00000 00 0
Q ss_pred CCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchh-eeecchhhhhhh-cCCCCcchhhHHHHHHHHH
Q 040453 338 SSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTL-TAIDNLGQIGGS-LGYPKKSISTFVSLVSIWN 415 (547)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl-~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n 415 (547)
. ++++. ....++..|+++.|.+.+...+....+. .+.+...++.++ +|.+..++.....+.++++
T Consensus 221 ----------~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~ 287 (434)
T PRK15075 221 ----------K-HRPSM--REIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSN 287 (434)
T ss_pred ----------h-hcccc--ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 00000 0012333455666655433322222222 333446666665 6887777777778899999
Q ss_pred hhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH-HHHHH--HHhhccc--hHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 040453 416 YLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC-IGHLL--IAFNVPG--GLYVASIIIGFCFGAQWPLVFAIISELFG 490 (547)
Q Consensus 416 ~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~-i~~ll--l~~~~~~--~l~~~~~liG~~~G~~~~~~p~l~s~~FG 490 (547)
.++++..|+++||++|| +.. . ...++.+ ...+. +....+. .+.+...+.|+++|..........+|.+.
T Consensus 288 ~~~~~~~g~l~Dr~g~r----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p 361 (434)
T PRK15075 288 FIWLPIGGALSDRIGRR----PVL-I-AFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMP 361 (434)
T ss_pred HHHHHHHHHHHHHhcch----HHH-H-HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC
Confidence 99999999999999765 221 1 1111111 11111 1111111 12233456778888777777788999999
Q ss_pred CCchhhhcchh-ccchhhHHHHHHHHHHHHHhHHHH
Q 040453 491 LKYYSTLYNFG-GAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 491 ~k~~g~nyg~~-~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
.+.-|+-.|+. .++..+++ .+.|.+.|.+.|+..
T Consensus 362 ~~~rg~~~g~~~~~~~~~~g-~~~p~~~g~i~~~~g 396 (434)
T PRK15075 362 AEVRTAGFSLAYSLATAIFG-GFTPAISTWLIHVTG 396 (434)
T ss_pred CCccchheeHHHHHHHHHHh-hhHHHHHHHHHHhcC
Confidence 88888887774 33444434 346788898888754
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=144.05 Aligned_cols=337 Identities=12% Similarity=0.003 Sum_probs=199.9
Q ss_pred cccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Q 040453 56 FSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHM 134 (547)
Q Consensus 56 fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l 134 (547)
...+-|.+.++++.|..|...+.....++.. ..++.|.+.||+|+|.++.++.++.++++.++... ......++|.+
T Consensus 36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 113 (417)
T PRK10489 36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN--AFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH--HHcCCCcHHHH
Confidence 3445677778888899998888777677765 47899999999999999988888888877654321 11122345555
Q ss_pred HHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhh
Q 040453 135 CLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFL 213 (547)
Q Consensus 135 ~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~ 213 (547)
....++.|.+.+....+......+++|+ +|+.+.++......++..+-..+...+.+.
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~--------------------- 172 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA--------------------- 172 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---------------------
Confidence 4444555555566556666677789975 689999887666666543322222111110
Q ss_pred heeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhh
Q 040453 214 RTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQM 293 (547)
Q Consensus 214 ~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~ 293 (547)
.+.+..|. .. .+.+++. .+.++..|
T Consensus 173 -----------~~~~~~~~---~~---~~~~~~~---------------------~~~~~~l~----------------- 197 (417)
T PRK10489 173 -----------GGVAWNYG---LA---AAGTFIT---------------------LLPLLRLP----------------- 197 (417)
T ss_pred -----------HhhHHHHH---HH---HHHHHHH---------------------HHHHHhCC-----------------
Confidence 00000111 00 0000000 00000000
Q ss_pred ccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHH
Q 040453 294 ALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILF 373 (547)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~ 373 (547)
+.++ + .++ . + + +.+......+..+|++.+|.++
T Consensus 198 --~~~~-~-~~~---------------~-----~----------------------~-~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T PRK10489 198 --ALPP-P-PQP---------------R-----E----------------------H-PLRSLLAGFRFLLASPVVGGIA 230 (417)
T ss_pred --CCCC-C-Ccc---------------c-----c----------------------c-chHHHHHHHHHHHcChHHHHHH
Confidence 0000 0 000 0 0 0 0000001245567888888777
Q ss_pred HHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 040453 374 FATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGH 452 (547)
Q Consensus 374 ~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ 452 (547)
+..++.... ..+........++ +|.++...+...++.++++.+|++..|+++|+.. . ...+....++.+++.
T Consensus 231 ~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~----~--~~~l~~~~~~~~~~~ 303 (417)
T PRK10489 231 LLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR----P--GLLMLLSTLGSFLAV 303 (417)
T ss_pred HHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC----c--chHHHHHHHHHHHHH
Confidence 654443222 2233344555666 7888777888889999999999999999988532 1 123334444555555
Q ss_pred HHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 453 LLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 453 lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
+++...+. ..+.+...+.|++.+....+..+++.|.+..++.|+.+|+......+|. .+++.+.|.++|.-.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~l~G~l~~~~g 376 (417)
T PRK10489 304 GLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD-AIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHHhc
Confidence 54443322 2234566778887777767777899999998899999999877777766 678889999998744
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-13 Score=143.56 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=115.7
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCC--------cchhhHHHHHHHHHhhhhhhcchhhhhhh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPK--------KSISTFVSLVSIWNYLGRVVSGFVSEIFL 430 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~--------~~a~~~Vsl~si~n~~GRl~~G~lsD~l~ 430 (547)
+.++.+|+++||.+++..++....-..+..+.....++.|.++ ...+...++..+....+++..|+++||++
T Consensus 200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467889999998888766653322223333444455666543 34578889999999999999999999887
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHhhc--c---chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc-cc
Q 040453 431 AKYKFPRPLMLTIILLLSCIGHLLIAFNV--P---GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG-AA 504 (547)
Q Consensus 431 ~r~~~~r~~~l~~~~~~~~i~~lll~~~~--~---~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~-~~ 504 (547)
+| ..+.+..++..++..++.... . ..+++..++.|++++......+.+++|.++.++.|+.+|+.. ..
T Consensus 280 ~r------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 280 IK------KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred cH------HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 54 244445555555544443321 1 124556789999999888899999999999999999999996 56
Q ss_pred hhhHHHHHHHHHHHHHhHHHH
Q 040453 505 SPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 505 ~~~gs~~l~~~l~G~~yd~~~ 525 (547)
..+|. .+++.+.|.++|+-.
T Consensus 354 ~~lg~-~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 354 NGFGS-LLGYILSGVMVEKMF 373 (418)
T ss_pred HhhHH-HHHHHHHHHHHHHhc
Confidence 77887 778999999999743
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-12 Score=136.10 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHhhccHHHHHHHHHHHHhhhchh-eeecchhhhhhhcCCCCcc----hhhHHHHHHHHHhhhhhhcchhhhhhhhhcCC
Q 040453 361 LQALFSLDMLILFFATICGVGGTL-TAIDNLGQIGGSLGYPKKS----ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKF 435 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~Gl-~~i~n~~~I~~a~g~~~~~----a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~ 435 (547)
.+.+|++++|..++...+...... .+........++.+.+..+ .+...++.++.+.++++..|+++||+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~--- 288 (408)
T PRK09874 212 VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE--- 288 (408)
T ss_pred HHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 456778888764443222211111 1222233333444332222 23445667888999999999999988654
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHH
Q 040453 436 PRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNV 514 (547)
Q Consensus 436 ~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~ 514 (547)
..+....++..++.+++.... ...+++..++.|++.|.........+.+....++.|+.+++......+|. .+++
T Consensus 289 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~gp 364 (408)
T PRK09874 289 ---KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN-VTGP 364 (408)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH-HhhH
Confidence 223333334444444333322 23345567889999999999999999999988999999998877777776 6677
Q ss_pred HHHHHHhHHH
Q 040453 515 RVAGHLYDKE 524 (547)
Q Consensus 515 ~l~G~~yd~~ 524 (547)
.+.|.+.|..
T Consensus 365 ~~~G~l~~~~ 374 (408)
T PRK09874 365 LMGAAISANY 374 (408)
T ss_pred HHHHHHHhhc
Confidence 8888887754
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-13 Score=140.45 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=109.1
Q ss_pred HHhhhccHHHHHHHHHHHHhh-ccccccccccHHHHHHhCCChhhhHHHHHHHHhh-hhhhchhhhhhccCCcHHHHHHH
Q 040453 30 IQVITGRWFMVFASFLIMAAA-GATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLG-ANVGILSGLINEITPPWVVLVLG 107 (547)
Q Consensus 30 ~~~~~~Rw~~l~a~~~v~l~~-Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG-~~~gi~~G~l~D~~Gp~~~l~iG 107 (547)
++..+.||.+++.-.+.=.+- =+-=.|++=.|.|++++++|.+|+-.++++..+. +..=+..|.+.||..||..+.+|
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 334444555554433322111 1123689999999999999999999985543332 22347999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHH
Q 040453 108 AVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLY 186 (547)
Q Consensus 108 ~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~ 186 (547)
-++.++--.++... .+++.+.++..+-|.=|++.-.+|-.+..+|||+ +||+..++--+..-.|+++...+.
T Consensus 101 Lilsai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 101 LILSAIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 88866665554332 3677777777777777777778999999999986 699999999888889988877655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=135.65 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=90.4
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
..+.+..+-|++++++|+|..+...+.....++..+ .++.|.+.||+|+|..+++|.++..+++.++... ++
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~ 90 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ET 90 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------Cc
Confidence 344555789999999999999998876665666654 6899999999999999999999998888765432 23
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSG 179 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa 179 (547)
.+.++....+.|.+.+..+........+++| ++|+.+.++..+...+++
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~ 140 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP 140 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 4444444455566666666677777788996 579999998766655554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-12 Score=135.45 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=81.0
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
+.+...-|++.+++|+|..+...+..+..++.. ..++.|.+.||+|+|.++.++.++..++..++... ++++
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~ 97 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLT 97 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 344445577889999999999997666666665 47999999999999999999999888887655322 2355
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhh
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLS 178 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLS 178 (547)
.+++...+.|.+.+.....+.....+.+| ++|+.+.++......++
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVS 144 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 55555555565555444444444456676 46787777654444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=138.86 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=83.8
Q ss_pred eecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH-HHHHHHH--HHHhhc-c
Q 040453 386 AIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL-LSCIGHL--LIAFNV-P 460 (547)
Q Consensus 386 ~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~-~~~i~~l--ll~~~~-~ 460 (547)
+.....++.+ .+|.+..+.....++..+...+|++..|+++||++||+ .+.+..+ +.+.+.. ...... .
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~------~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP------FVILGSVALFVLAIPAFILINSNVI 342 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3344566664 46877666666777888999999999999999998652 2222222 1222222 111221 1
Q ss_pred chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHHHHHHHHHHhHHH
Q 040453 461 GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 461 ~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
..++++.++.|+++|...+..+.++.|+|..+.-|+-.|+. .++. +++ .+.+.+.|.+.|..
T Consensus 343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g-~~~p~i~g~l~~~~ 405 (490)
T PRK10642 343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV-LVA-GLTPTLAAWLVEST 405 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHH-HHHHHHHHHHHHHh
Confidence 23455667888888888899999999999998888766653 3333 223 34566777776654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-12 Score=137.42 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=94.2
Q ss_pred HhhccHHHHHHHHHHHH-hhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhH
Q 040453 362 QALFSLDMLILFFATIC-GVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPL 439 (547)
Q Consensus 362 q~l~t~~Fwll~~~~~~-~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~ 439 (547)
+.+|++++|.+.+...+ .............+.. +.+|.+.........+.++..++++++.|+++||++|| |..
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr----~~~ 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR----RVY 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHH
Confidence 35678888876543222 2222222223333333 34676655444444567788899999999999998865 222
Q ss_pred HHHHHHHHHHHHHHHH--Hh-hcc-c-hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc-cchhhHHHHHH
Q 040453 440 MLTIILLLSCIGHLLI--AF-NVP-G-GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG-AASPLGSYLLN 513 (547)
Q Consensus 440 ~l~~~~~~~~i~~lll--~~-~~~-~-~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~-~~~~~gs~~l~ 513 (547)
....++.+++.+.+ .. ... . .+.+...+.++++|...++.+++++|.|+.|+-++-.|+.+ ++..+++ .++
T Consensus 320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg-~~~ 396 (438)
T PRK09952 320 --ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGG-GFT 396 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHH-HHH
Confidence 22222222322211 11 111 1 22334566789999999999999999999988777777753 4444666 567
Q ss_pred HHHHHHHhHHH
Q 040453 514 VRVAGHLYDKE 524 (547)
Q Consensus 514 ~~l~G~~yd~~ 524 (547)
|.+.|.++|..
T Consensus 397 p~i~g~l~~~~ 407 (438)
T PRK09952 397 PFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHhc
Confidence 88999998754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-12 Score=131.50 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=102.3
Q ss_pred HhhccHHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHH
Q 040453 362 QALFSLDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440 (547)
Q Consensus 362 q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~ 440 (547)
+.+|++++|.+++..++..+....+........ +++|.++.+.+...++..+....+++..|+++||+++|+ .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~------~ 267 (375)
T TIGR00899 194 GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR------L 267 (375)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh------H
Confidence 356788888877765554443333333444444 457887777777777778888899999999999887542 2
Q ss_pred HHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 441 LTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 441 l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
+.+..++..+..+++.... ...+++..++.|+++|.........+.|.+. ++.++..++......+|. .+++.+.|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~g~~~~g~ 345 (375)
T TIGR00899 268 MLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGW-IIAGSVGGI 345 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 2222223233332222222 2234445677899999888888888999986 566788888766666776 667888999
Q ss_pred HhHHH
Q 040453 520 LYDKE 524 (547)
Q Consensus 520 ~yd~~ 524 (547)
++|..
T Consensus 346 ~~~~~ 350 (375)
T TIGR00899 346 LAERW 350 (375)
T ss_pred HHHhc
Confidence 98864
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-12 Score=135.81 Aligned_cols=139 Identities=13% Similarity=-0.085 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhC---CChhhhHHH---HHHHHhhh-hhhchhhhhhccCCcHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALG---YDQTTLNLL---SFFKDLGA-NVGILSGLINEITPPWVVLVL 106 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~---~sqs~l~~i---s~~~~vG~-~~gi~~G~l~D~~Gp~~~l~i 106 (547)
+||..++.+.+......- .+.++..++.++++++ .+..|...+ ....-++. ..+++.|.+.||+|+|.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 456555555444443332 3557778888999985 455543222 12222333 237899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc--cCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhh
Q 040453 107 GAVLNFFGYFMIWLAVTKKI--ARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGY 174 (547)
Q Consensus 107 G~vl~~~Gy~l~~l~~~g~i--~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~ 174 (547)
+.++..++..+..+. .+.. ...+.+++.++-++.|.|.+..+.++.+...+++| ++||.+.++....
T Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~ 168 (432)
T PRK10406 99 SVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVT 168 (432)
T ss_pred HHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHH
Confidence 999988887655332 1110 00122345556667788888888888888889997 5789887765443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=137.65 Aligned_cols=121 Identities=8% Similarity=0.040 Sum_probs=86.3
Q ss_pred cHHHHHHh-----CCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Q 040453 60 SGDIKYAL-----GYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133 (547)
Q Consensus 60 s~~L~~~~-----~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~ 133 (547)
.+.+++++ +.+..+..++.....+|..+ .++.|++.||+|+|.++.++.++..++..+..+..+.. +..+++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 117 (502)
T TIGR00887 39 TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMAT 117 (502)
T ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHH
Confidence 35555542 34455666676767777754 78999999999999999999998888876554321111 1112455
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHH
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAI 181 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I 181 (547)
++.+-.+.|.+.+..+..+......+||. +||+++++...+..++..+
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 66677777888888888888889999985 6999999988777666533
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=133.38 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=92.6
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
+.|.-.-|++.+++|+|.+|...+..+..++.. ..++.|.+.||+|+|.++.++.++..++..++... .+.+
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~ 80 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTID 80 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 456667788889999999999997666666665 47999999999999999999999988887765432 2344
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHH
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIIT 183 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s 183 (547)
.+.....+.|.+.+..+.+......+++|+ +||++.++......++..+-.
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 132 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAP 132 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666777889975 689999998777777664433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=127.88 Aligned_cols=159 Identities=11% Similarity=-0.041 Sum_probs=118.3
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRP 438 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~ 438 (547)
+.++.+|+++||.+.+..++..++-..+.+...+..++.|.++.+.+...++..++..++.+..|.+.||+++|
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~------ 270 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR------ 270 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH------
Confidence 45788999999999887777666666677777788888999888888877777788888877777777766532
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc-cchhhHHHHHHHHH
Q 040453 439 LMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG-AASPLGSYLLNVRV 516 (547)
Q Consensus 439 ~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~-~~~~~gs~~l~~~l 516 (547)
..+.+..+...+..+++...+. ..+++..++-|+++|..+.....++++. ..++.++-.++.. ++..+|. .+++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~-~~g~~~ 348 (382)
T TIGR00902 271 DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI-AIFTAF 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2445666666666655554433 3455578999999999999999999987 6677776666653 4566776 567789
Q ss_pred HHHHhHHHH
Q 040453 517 AGHLYDKEA 525 (547)
Q Consensus 517 ~G~~yd~~~ 525 (547)
.|.+||+-.
T Consensus 349 ~G~l~~~~g 357 (382)
T TIGR00902 349 AGFIYPTLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999999863
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-12 Score=130.95 Aligned_cols=321 Identities=11% Similarity=0.031 Sum_probs=181.1
Q ss_pred ccHHHHHHhCCChhhhHHHHHHHHhhhhhhchhhhhhccC-----CcHHHH-HHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 59 YSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLINEIT-----PPWVVL-VLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 59 ys~~L~~~~~~sqs~l~~is~~~~vG~~~gi~~G~l~D~~-----Gp~~~l-~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
--|.+.+++|+|.+|+..+++...... ..++.|.+.||+ |+|..+ +++.++..+....+ .+.. +..++|
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l--~~~~--~~~~l~ 84 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL--SFLV--PSTDLP 84 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH--HcCC--cchhHH
Confidence 345677889999999999865543333 489999999998 777764 45566655543333 2221 123455
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFA 211 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li 211 (547)
.+.....+.+...+..+.+.-.-..+++| ++||.+.|+...++.++..+-..+...+.+.
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~------------------- 145 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP------------------- 145 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------
Confidence 55544444555666666666777889996 5799999998887777665544333221110
Q ss_pred hhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhh
Q 040453 212 FLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSK 291 (547)
Q Consensus 212 ~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~ 291 (547)
...+ .......+..+.+ .++..++... +.....
T Consensus 146 -------~g~~--~~~~~~wr~~f~i---~ai~~l~~~~--------------------------~~~~~~--------- 178 (356)
T TIGR00901 146 -------EFAN--TGLITLWGYIFFW---TALLILPGLL--------------------------VTLFLA--------- 178 (356)
T ss_pred -------cccc--cccccccHHHHHH---HHHHHHHHHH--------------------------HHHHhc---------
Confidence 0000 0000001100111 0000000000 000000
Q ss_pred hhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHH---
Q 040453 292 QMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLD--- 368 (547)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~--- 368 (547)
+|+. + .++ ++ ++ . + ++. ..+.++.+|++.
T Consensus 179 ----~e~~-~-~~~---------~~---~~--------------------------~-~-~~~--~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 179 ----KEPQ-E-DAS---------VP---KP--------------------------L-T-QAV--LKPIREFFQRKNMIQ 210 (356)
T ss_pred ----cCCC-c-ccc---------cc---hh--------------------------H-H-HHH--HHHHHHHHHhcCchH
Confidence 0010 0 000 00 00 0 0 000 013456666665
Q ss_pred HHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHH-HHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHH
Q 040453 369 MLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVS-IWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLL 447 (547)
Q Consensus 369 Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~s-i~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~ 447 (547)
+|.+.+..++...+...+.....+..+++|.++++.+...++.+ +...+|.+++|+++||+++|+ .+....++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~------~l~~~~~~ 284 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY------ALLLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHH
Confidence 77666655554444444555666777778888877777777766 578899999999999987652 23333333
Q ss_pred HHHHHHHHHhh---c-------c--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 448 SCIGHLLIAFN---V-------P--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 448 ~~i~~lll~~~---~-------~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
.+++..++... . + ..+..+.++.++++|.......++..|.+-.++-|+.+|+....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 44443322211 1 1 12344566779999999999999999999999999999987553
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-11 Score=131.27 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=92.7
Q ss_pred ccccccc---HHHHHHh--------CCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHH
Q 040453 54 YMFSLYS---GDIKYAL--------GYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLA 121 (547)
Q Consensus 54 Y~fSiys---~~L~~~~--------~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~ 121 (547)
|..++++ +.+++.+ +++..+..++.....+|.. ..++.|.+.||+|+|.+++++.++..++..+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~ 105 (479)
T PRK10077 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWP 105 (479)
T ss_pred cccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444 4466666 8888888887776677775 47999999999999999999999988886655431
Q ss_pred H---hccc-cC-chHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHH
Q 040453 122 V---TKKI-AR-PQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAII 182 (547)
Q Consensus 122 ~---~g~i-~~-~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~ 182 (547)
. .... ++ ..++.+.++-++.|.+.+..+..+.....+++|+ +||.+.|+......++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 0 0000 11 1233444566778888888888888888999985 69999999887777776543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-11 Score=126.21 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=106.6
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRP 438 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~ 438 (547)
+.++.+|++.||.+.+..++....-..+.+...+..++.|.++.+.+...++..+....+++..|++.||+++|
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------ 270 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR------ 270 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------
Confidence 56899999999988776555443333344555666677888877778888888888888888888888876543
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc-cchhhHHHHHHHHH
Q 040453 439 LMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG-AASPLGSYLLNVRV 516 (547)
Q Consensus 439 ~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~-~~~~~gs~~l~~~l 516 (547)
..+.+..+..++..+++..... ..+++..++.|+++|......-..+.+.- ..+.++.++... +...+|. .+++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~ig~~i 348 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSI-AIMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2344455555555554443332 34556778889998877666666666654 455577677664 4444554 567889
Q ss_pred HHHHhHHH
Q 040453 517 AGHLYDKE 524 (547)
Q Consensus 517 ~G~~yd~~ 524 (547)
.|.++|+-
T Consensus 349 ~G~l~~~~ 356 (382)
T PRK11128 349 SGFLYQHL 356 (382)
T ss_pred HHHHHHhc
Confidence 99999975
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-11 Score=125.21 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=100.2
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc----CCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL----GYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK 434 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~----g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~ 434 (547)
+.+|.+|++++|.+.+..++....-....+......++. +.+....+...++..+.+..+++..|++.||+++|+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~- 285 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN- 285 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 468899999999876654443222111212222333332 333334566778888999999999999999987552
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcch-hccchhhHHHHH
Q 040453 435 FPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF-GGAASPLGSYLL 512 (547)
Q Consensus 435 ~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~-~~~~~~~gs~~l 512 (547)
.+.+..++.++...++.... +..+++..++.|+++.......-..+.+.++.|.-++.++. ......+|+ .+
T Consensus 286 -----~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~-~~ 359 (396)
T TIGR00882 286 -----ALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAM-IF 359 (396)
T ss_pred -----hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHH-HH
Confidence 23344444455544433322 23345566778888766666666677888888887776665 345566776 56
Q ss_pred HHHHHHHHhHHH
Q 040453 513 NVRVAGHLYDKE 524 (547)
Q Consensus 513 ~~~l~G~~yd~~ 524 (547)
++.+.|.++|.-
T Consensus 360 ~~~l~G~l~~~~ 371 (396)
T TIGR00882 360 LSTLAGNMYDSI 371 (396)
T ss_pred HHHhHHHHHHhc
Confidence 678999999974
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-11 Score=143.31 Aligned_cols=335 Identities=11% Similarity=0.029 Sum_probs=191.7
Q ss_pred ccccHHHHHHhCCChhh--hHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Q 040453 57 SLYSGDIKYALGYDQTT--LNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133 (547)
Q Consensus 57 Siys~~L~~~~~~sqs~--l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~ 133 (547)
.+..+.+.+.++.++++ ..++.++..++. .+++++|.+.||+|+|.+++++.++..++.++..++.. . .++|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--L--GWFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--H--ccHHH
Confidence 44555666677776654 344444444544 35899999999999999998887766555554433221 1 23566
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAF 212 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~ 212 (547)
+++..++.|.+.+....+......+++| ++||.+.|+......++..+-..+...+...
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~-------------------- 165 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES-------------------- 165 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 6666666777888888888888889997 4799999998777666543332222111110
Q ss_pred hheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhh
Q 040453 213 LRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQ 292 (547)
Q Consensus 213 ~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~ 292 (547)
+. ... .++....+..+... .....++. +++.+..|
T Consensus 166 --~~---~~~-~~~~~~~~~~~~~~---~~~~~~~~--------------------~~~~~~~~---------------- 200 (1146)
T PRK08633 166 --VN---GNT-PSEILGRIAPAGLV---LLAVAVLG--------------------LIFAYRLP---------------- 200 (1146)
T ss_pred --hc---ccc-ccccccchHHHHHH---HHHHHHHH--------------------HHHHhcCc----------------
Confidence 00 000 00000011100000 00000000 00000000
Q ss_pred hccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHH
Q 040453 293 MALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLIL 372 (547)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll 372 (547)
..++ + ..+ . .+ + .. ..........+++.++++.+|.+
T Consensus 201 ---~~~~-~-~~~---------~-----~~----~-------------------~~-~~~~~~~~~~~~~l~~~~~~~~~ 237 (1146)
T PRK08633 201 ---KVPA-A-APE---------V-----FD----K-------------------KK-YLFPKLLWRNLKLLRSDRVLWLA 237 (1146)
T ss_pred ---CCCC-C-Ccc---------c-----cc----c-------------------cc-cccHHHHHHHHHHHhcCcHHHHH
Confidence 0000 0 000 0 00 0 00 00000001135677889999988
Q ss_pred HHHHHHhhhchheeecchhhhhhh-cCCCCc-chhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHH
Q 040453 373 FFATICGVGGTLTAIDNLGQIGGS-LGYPKK-SISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCI 450 (547)
Q Consensus 373 ~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~-~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i 450 (547)
.+.+++.......+.....+..++ +|.+.. ..+.+.++..++..+|.++.|+++||+.++. .+.+..+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~------~~~~~~~~~~~ 311 (1146)
T PRK08633 238 IIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG------LVPLGALGLAL 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc------chhHHHHHHHH
Confidence 877666655555555556666554 788777 7788889999999999999999999775432 22233344444
Q ss_pred HHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 451 GHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 451 ~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
+.+++..... ..+.+..++.|++.|.......+++.+.+..++-|+.+++..+...++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~ 371 (1146)
T PRK08633 312 SLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM 371 (1146)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence 4444333222 2345677889999999998889999999998888998887765555544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=132.43 Aligned_cols=340 Identities=13% Similarity=0.105 Sum_probs=213.7
Q ss_pred HHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhh
Q 040453 64 KYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGA 142 (547)
Q Consensus 64 ~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg 142 (547)
+.+++||++|-+++-.+...|..+ -+|+|.++||+|.|.++..++++..++-+++=++.+ .+.|.+++.=++.|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence 568999999999987777889876 478899999999999999999999988877644422 23344455666778
Q ss_pred cccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeeccc
Q 040453 143 NSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRILKV 221 (547)
Q Consensus 143 ~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~ 221 (547)
++.+..+.+.-.-..||+| ++|++..+++.++.-+|..+-..+...+.+.
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----------------------------- 190 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES----------------------------- 190 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----------------------------
Confidence 8888888788888899997 6899999999999877765544333333221
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcc
Q 040453 222 IRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVE 301 (547)
Q Consensus 222 ~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (547)
+-+-+..|+.+-.+ ..+..++..... .|.| +
T Consensus 191 --~~GW~sifY~~g~~---g~i~~~~w~~~~-------------------------------------------~d~P-~ 221 (466)
T KOG2532|consen 191 --SLGWPSIFYVFGIV---GLIWFILWFLFY-------------------------------------------SDSP-S 221 (466)
T ss_pred --CCCCchHHHHHHHH---HHHHHHHHHHHh-------------------------------------------cCCc-c
Confidence 01334455521111 111111110000 0111 0
Q ss_pred cccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhh
Q 040453 302 IITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVG 381 (547)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g 381 (547)
. ++..+ + .|.+ ...+.. ..+..+++.+..++++++++.+|.+|++.++..-
T Consensus 222 ~-h~~is------~--~El~--------~I~~~k------------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~ 272 (466)
T KOG2532|consen 222 K-HPNIS------E--KELK--------YIEKGK------------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW 272 (466)
T ss_pred c-CCCCC------H--HHHH--------HHHhcc------------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH
Confidence 0 10000 0 0000 000000 0000011135678999999999999999888755
Q ss_pred chheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC----hhHHHHHHHHHHHHHHHHHH
Q 040453 382 GTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP----RPLMLTIILLLSCIGHLLIA 456 (547)
Q Consensus 382 ~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~----r~~~l~~~~~~~~i~~lll~ 456 (547)
.-..++........+ ++++-++.+.+.++=-+....-++++|.++|++.+| .+. |..+-.+.+...++.++.+.
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeee
Confidence 555555555555554 899889999999999999999999999999999876 443 44445666666666665554
Q ss_pred hhcc--c--h---HHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 457 FNVP--G--G---LYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 457 ~~~~--~--~---l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
.... . . +.++..+.|++.++..-- .-.-.++|-+...|+......+.. +++|.+.|.+-.
T Consensus 352 ~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~-----~~~~apq~a~~l~g~~~~~~~~~~-~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 352 FTSDEHRLLAVILLTIAIGLSGFNISGFYKN-----HQDIAPQHAGFVMGIINFVGALAG-FIAPLLVGIIVT 418 (466)
T ss_pred ecCCCcchHHHHHHHHHHHHcccchhhhHhh-----hhhccchHHHHHHHHHHHHHHHHH-HHHHHheeeEeC
Confidence 4331 1 1 112334555555554421 111157888888888877777776 567878877763
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=145.54 Aligned_cols=158 Identities=12% Similarity=0.009 Sum_probs=113.5
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
.+++..+++.+|.+.+.+++......++......+.++ +|.++...+.+.+.++++..+|.+..|+++|+..++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 46678899999999988777666655566667777765 68888888999999999999999999999986543322211
Q ss_pred hHHHHHHHHHHHHHHHHHHh---------------------hccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh
Q 040453 438 PLMLTIILLLSCIGHLLIAF---------------------NVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST 496 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~---------------------~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~ 496 (547)
..++..+..+.+.. .....+.+..+++|++.|.......+++.+.+..++.|+
T Consensus 297 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 297 ------GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred ------HHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 11111111111111 111234567788999999999999999999999999999
Q ss_pred hcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 497 LYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 497 nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.+|+..+...++. .+++.+.|.++|.
T Consensus 371 v~g~~~~~~~~~~-~ig~~~~g~l~~~ 396 (1140)
T PRK06814 371 VIAANNVLNAAFM-VAGTIILALLQAL 396 (1140)
T ss_pred eeHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 9999877776665 5566777887754
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=122.23 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=86.4
Q ss_pred eecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchH
Q 040453 386 AIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGL 463 (547)
Q Consensus 386 ~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l 463 (547)
+........+ .++.++.+++...++..+...+++++.|+++||+++|+ .. ....+..++......... +..+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF----LM--RVAAVAGVCFYAGMLMAHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344554554 47888777788888888888999999999999998652 11 122222222222222121 2223
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 464 YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 464 ~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
.+...+.++++|...+..+....|.+. ++-|+..++......+|. .+++.+.|.++|+.
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~-~~g~~l~G~i~~~~ 367 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGW-IIAGSLAGIVAEIW 367 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 334566777788777888888899996 568888887766666666 66788999999864
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-10 Score=118.74 Aligned_cols=353 Identities=14% Similarity=0.127 Sum_probs=224.5
Q ss_pred ccccHHHHHHhCCChhhhHHHHHHHHhhhhh--hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Q 040453 57 SLYSGDIKYALGYDQTTLNLLSFFKDLGANV--GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHM 134 (547)
Q Consensus 57 Siys~~L~~~~~~sqs~l~~is~~~~vG~~~--gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l 134 (547)
.+--|++|+.+++|+.|...+-++. .++|+ ++|.|++.+|+|-|..+++|..+..+|..++|-+-..+ .+-..
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaf-f~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y~~F 107 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAF-FGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SYGFF 107 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHH-HHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHH
Confidence 4567999999999999999986654 55664 89999999999999999999999999999988543222 12223
Q ss_pred HHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhh
Q 040453 135 CLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFL 213 (547)
Q Consensus 135 ~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~ 213 (547)
+.-..+-+.|.+.-.|++-.-.....|.+ .-.=..++.+++||++.+--.+.+.+...+..
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~------------------ 169 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA------------------ 169 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh------------------
Confidence 33345567889999999999999999764 44556788999999998888777765543100
Q ss_pred heeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhh
Q 040453 214 RTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQM 293 (547)
Q Consensus 214 ~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~ 293 (547)
. ...+++....+ ....+..-..|+.+. ..++ ++ .+....
T Consensus 170 ---~----~~~~~~~~~~~-~~~~~~v~~pYl~~~------------------~~lv-ll----~v~~~~---------- 208 (422)
T COG0738 170 ---L----TMSAAQILAIK-GADASSVQFPYLILA------------------GLLV-LL----AVLILL---------- 208 (422)
T ss_pred ---h----ccCHHHHHHHH-HHHHHhhhhHHHHHH------------------HHHH-HH----HHHHHh----------
Confidence 0 00001111111 000000000111110 0000 00 000000
Q ss_pred ccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHH
Q 040453 294 ALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILF 373 (547)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~ 373 (547)
.+.|. .+++ + + . ..+ .++.+..+++|++++|+--
T Consensus 209 -~k~p~--~~~~---------------------~---~----------------~--~~~-~~~~~~~~l~~~~~~~~gv 242 (422)
T COG0738 209 -SKLPD--LQVA---------------------A---P----------------S--LGA-SGSAGLSSLFQNKHLRLGV 242 (422)
T ss_pred -ccCCc--CCcc---------------------c---c----------------c--ccc-cccchHHHHHhChHHHHHH
Confidence 01111 0000 0 0 0 000 1122678899999999999
Q ss_pred HHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 040453 374 FATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGH 452 (547)
Q Consensus 374 ~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ 452 (547)
+..++=+|.-.+.=+.+.+...+ .|.++.+++.+++..-++-.+||++.-++..|+. ..| .+....+..++-+
T Consensus 243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~----~~k--~Laf~a~~~ill~ 316 (422)
T COG0738 243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK----PEK--YLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----HHH--HHHHHHHHHHHHH
Confidence 99999999999999999999988 7888888999999999999999976666655543 323 2222222222222
Q ss_pred HHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhhc
Q 040453 453 LLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 453 lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~~ 528 (547)
+............+..++|+-.+..|...-++..+..| +|=+.-=+++.+ ..+|. .+-|.+.|.+-|+....+
T Consensus 317 ~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGG-AiiP~l~G~i~d~~g~~~ 389 (422)
T COG0738 317 LAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGG-AIIPPLQGVIADMFGIQL 389 (422)
T ss_pred HHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecc-hHHHHHHHHHHHhhhhHH
Confidence 22222222333447889999999999999999999998 554444444444 55565 445889999999876543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=126.75 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=93.1
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHH-HHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVS-LVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vs-l~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
++++.++++++|.+.+..++.........+...+.. +..|++..+.+...+ +..++..+|.++.|+++||+++|
T Consensus 214 ~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~---- 289 (491)
T PRK11010 214 PLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF---- 289 (491)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----
Confidence 456778888888776544332211111222334444 458888888877764 55689999999999999999865
Q ss_pred hhHHHHHHHHHHHHHH---HHHHhhccc--hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHH
Q 040453 437 RPLMLTIILLLSCIGH---LLIAFNVPG--GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYL 511 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~---lll~~~~~~--~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~ 511 (547)
|. +.+..++.++.. .++...... .+.....+..+++|...+.+.++..++...+.-++.|++......+|..
T Consensus 290 ~~--l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~- 366 (491)
T PRK11010 290 RA--LMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV- 366 (491)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-
Confidence 22 222222222222 222222222 1223345544445544455555666666666667788888777777774
Q ss_pred HHHHHHHHHhHHH
Q 040453 512 LNVRVAGHLYDKE 524 (547)
Q Consensus 512 l~~~l~G~~yd~~ 524 (547)
+.+.+.|.++|..
T Consensus 367 ~~~~~~G~l~~~~ 379 (491)
T PRK11010 367 YVGPVAGWFVEAH 379 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 4456899999854
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=123.10 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=105.4
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
.+++.+|+++||.+.+..++...... ..+...+. .+. ++ ++...+...++..+...++.+.+|+++||++||
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---- 287 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAFN-IKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---- 287 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHH-HHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----
Confidence 35678899999998876665433322 22222222 222 23 333455666777899999999999999988754
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc-c-chHHHHHHHHHhhhccchhhHHHHHHHh-------hcCCchhhhcchhccchhh
Q 040453 437 RPLMLTIILLLSCIGHLLIAFNV-P-GGLYVASIIIGFCFGAQWPLVFAIISEL-------FGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~~-~-~~l~~~~~liG~~~G~~~~~~p~l~s~~-------FG~k~~g~nyg~~~~~~~~ 507 (547)
+ .+.+..++.+++.+++.... . ..+++..++.|+++|....+..++++|. .|.|+-|..+|+..+..-+
T Consensus 288 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 288 I--LFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred H--HHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 2 23334444455554443322 1 2344566788999999999999998887 4678889999998887777
Q ss_pred HHHHHHHHHHHHHhHHH
Q 040453 508 GSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~ 524 (547)
|. .+++.+.|.++|.-
T Consensus 366 g~-~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 366 GQ-ALAGFLVGLILGII 381 (437)
T ss_pred HH-HHHHHHHHHHHHHc
Confidence 77 66788899888764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=121.07 Aligned_cols=337 Identities=11% Similarity=0.065 Sum_probs=183.1
Q ss_pred hccccccccccHH--HHHHhCCChhhhHHHHHHHHhhhhhhchhhhhhccC-----CcHH-HHHHHHHHHHHHHHHHHHH
Q 040453 50 AGATYMFSLYSGD--IKYALGYDQTTLNLLSFFKDLGANVGILSGLINEIT-----PPWV-VLVLGAVLNFFGYFMIWLA 121 (547)
Q Consensus 50 ~Gt~Y~fSiys~~--L~~~~~~sqs~l~~is~~~~vG~~~gi~~G~l~D~~-----Gp~~-~l~iG~vl~~~Gy~l~~l~ 121 (547)
-|.+|.|..-+-| |+ +.|+|-+|+..+...... -.+.+++|.+.||+ |.|. .+.++.+...+...++..
T Consensus 11 ~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~- 87 (402)
T PRK11902 11 SGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF- 87 (402)
T ss_pred HhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh-
Confidence 3444444433322 44 459999999887555444 35789999999999 6654 666777776666554432
Q ss_pred HhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHH
Q 040453 122 VTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILF 200 (547)
Q Consensus 122 ~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllf 200 (547)
... ..++|.+..+.++.+......+.+.-....+++|++ ||.+.++...+++++..+-..+...+.+.
T Consensus 88 -~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-------- 156 (402)
T PRK11902 88 -CPP--HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR-------- 156 (402)
T ss_pred -cCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--------
Confidence 211 234666655544445556667777777788999875 99999998877777654444322221110
Q ss_pred HHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhh
Q 040453 201 IGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVV 280 (547)
Q Consensus 201 la~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~ 280 (547)
. .+.+..|. .. ++..++.... .+.
T Consensus 157 ------------------~-----~gw~~~f~---i~----a~~~l~~~l~--------------------~~~------ 180 (402)
T PRK11902 157 ------------------V-----LGWGNTYL---LM----AGLMLAGALT--------------------TLW------ 180 (402)
T ss_pred ------------------c-----cCHHHHHH---HH----HHHHHHHHHH--------------------HHh------
Confidence 0 01111111 11 1100000000 000
Q ss_pred hhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcH
Q 040453 281 VIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTI 360 (547)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~ 360 (547)
. .+|+ + .++ + + + +. + ++ ...+.
T Consensus 181 ~--------------~e~~-~-~~~---------~-----------~--~----------------~~-~-~~--~~~~~ 202 (402)
T PRK11902 181 A--------------PEPE-V-PAR---------P-----------P--R----------------SL-G-EA--VVGPL 202 (402)
T ss_pred c--------------CCCc-c-ccc---------c-----------c--c----------------hh-H-HH--HHHHH
Confidence 0 0110 0 000 0 0 0 00 0 00 01145
Q ss_pred HHhhccHHHHHHHHHHHHhhhc-hheeecchhhhhhhcCCCCcchhhHHHHHHH-HHhhhhhhcchhhhhhhhhcCCChh
Q 040453 361 LQALFSLDMLILFFATICGVGG-TLTAIDNLGQIGGSLGYPKKSISTFVSLVSI-WNYLGRVVSGFVSEIFLAKYKFPRP 438 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~-Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si-~n~~GRl~~G~lsD~l~~r~~~~r~ 438 (547)
++.+|+++||.+.+..++.... ......+...+.+++|.++.+.+...+..++ +..+|.+..|++.||+++|+
T Consensus 203 ~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~----- 277 (402)
T PRK11902 203 RDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR----- 277 (402)
T ss_pred HHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence 7889999999877764443222 1111122233445688887777777766654 58899999999999987552
Q ss_pred HHHHHHHHHHHHHHH---HHHhhc-c-chHHHHH----HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 439 LMLTIILLLSCIGHL---LIAFNV-P-GGLYVAS----IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 439 ~~l~~~~~~~~i~~l---ll~~~~-~-~~l~~~~----~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
.+.+..++.++..+ ++.... . ..+.+.. +..|+.++........++.+.++.++++. ++.+ ..++.
T Consensus 278 -~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~ 352 (402)
T PRK11902 278 -SLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL-LSAL---ASVGR 352 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHHH---HHHHH
Confidence 22222222222222 222222 1 1222222 35677788889999999999999887765 2222 23444
Q ss_pred HHHHHHHHHHHhHHHH
Q 040453 510 YLLNVRVAGHLYDKEA 525 (547)
Q Consensus 510 ~~l~~~l~G~~yd~~~ 525 (547)
...+ .+.|.++|+-.
T Consensus 353 ~~~~-~~~G~l~~~~G 367 (402)
T PRK11902 353 VYVG-PTSGYLVEAYG 367 (402)
T ss_pred HHHH-HHHHHHHHHhC
Confidence 3333 47889988754
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-09 Score=111.95 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=92.2
Q ss_pred ccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFF 113 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~ 113 (547)
+.+..+..+.++.......+.+.+ +.+.+++|.++.++..+..+..+.. .+.+++|.+.||+|+|.+++++.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAA--IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 345556666666655544444333 4566788889888888755554555 4689999999999999999999988877
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhh
Q 040453 114 GYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLS 178 (547)
Q Consensus 114 Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLS 178 (547)
+...+... . +. .+.-++.|.+.++.+.+......+++| ++|+++.|+......++
T Consensus 81 ~~~~~~~~-----~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~ 136 (393)
T PRK11195 81 GCLLMLFG-----I--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA 136 (393)
T ss_pred HHHHHHHH-----H--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 76543221 1 11 122245567788888888889999998 57999999986664443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-09 Score=112.28 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=82.0
Q ss_pred cccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 54 YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 54 Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
..+.---|++.+++|.|+.+.+.......++. ...++.|.+.||+|+|.+++++.++..++..+..+ . .+++
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a--~~~~ 105 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----T--TSMT 105 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----c--CCHH
Confidence 34444444678899999999887533333444 45789999999999999999998887777654422 1 3455
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHH
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAI 181 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I 181 (547)
.+.+.-++.|.+.++..........++||+ +|+.+.++......++..+
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444555566678986 5788888887776666543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-08 Score=106.69 Aligned_cols=159 Identities=15% Similarity=0.063 Sum_probs=109.1
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHH-HHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSI-WNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si-~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
+.++.+|++.+|.+....++...+...+.....+..+++|++.++.+...++..+ ...+|++..|++.||+++| |
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~----~ 275 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW----R 275 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH----H
Confidence 4678899999988777655554433344445567778899988888888887764 7788999999999998765 2
Q ss_pred hHHHHHHHHHHHHHHHH-HHhh----ccc--hHHHHHHHHHhhhccchhhHHHHHHHhhcC-CchhhhcchhccchhhHH
Q 040453 438 PLMLTIILLLSCIGHLL-IAFN----VPG--GLYVASIIIGFCFGAQWPLVFAIISELFGL-KYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~ll-l~~~----~~~--~l~~~~~liG~~~G~~~~~~p~l~s~~FG~-k~~g~nyg~~~~~~~~gs 509 (547)
.+.+..++.++..++ +... .+. .++...++.+++.|..+....+.+.+.... |+.|+.+++......+|.
T Consensus 276 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 276 --TFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 222222222111111 1111 111 123334555678888888888888888887 788999999888888887
Q ss_pred HHHHHHHHHHHhHHH
Q 040453 510 YLLNVRVAGHLYDKE 524 (547)
Q Consensus 510 ~~l~~~l~G~~yd~~ 524 (547)
.+++.+.|.+||+-
T Consensus 354 -~~g~~~~G~l~~~~ 367 (390)
T TIGR02718 354 -LIASSIAGYLTDRF 367 (390)
T ss_pred -HHHHHHHHHHHHHH
Confidence 67888999999975
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=110.84 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=96.1
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcc-hhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKS-ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~-a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
+.++.+|++.||.+.+..++..... ...+..............+ .........+...++-+++++++||++||+
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~---- 295 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAV-VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR---- 295 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH-HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH----
Confidence 4577889999999887655432221 2222222222221122222 233334455777888999999999987652
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhc--cchHHHHHHHHHhhhccchhhHHHHHHHhh-------cCCchhhhcchhccchhh
Q 040453 438 PLMLTIILLLSCI-GHLLIAFNV--PGGLYVASIIIGFCFGAQWPLVFAIISELF-------GLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 438 ~~~l~~~~~~~~i-~~lll~~~~--~~~l~~~~~liG~~~G~~~~~~p~l~s~~F-------G~k~~g~nyg~~~~~~~~ 507 (547)
.+.. ..++.++ +..++.... ...+++..++.|++.+....+..++++|.. |.|.-|..|+......-+
T Consensus 296 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl 373 (444)
T PRK09669 296 AFKW--TIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL 373 (444)
T ss_pred HHHH--HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH
Confidence 2222 2222222 222222211 123455678999999999999999999987 777888888887666666
Q ss_pred HHHHHHHHHHHHHhHHH
Q 040453 508 GSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~~ 524 (547)
|. .+++.+.|.++|.-
T Consensus 374 g~-alg~~i~g~ll~~~ 389 (444)
T PRK09669 374 GL-AIGGAVVGWILAWV 389 (444)
T ss_pred HH-HHHHHHHHHHHHHc
Confidence 65 56667777777643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=121.81 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=96.3
Q ss_pred ccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHH--hccc-----
Q 040453 55 MFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAV--TKKI----- 126 (547)
Q Consensus 55 ~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~--~g~i----- 126 (547)
..+.--++++++++++.+|..++..+.+++.. ..++.|++.||+++|..+.+|.++.++|-+++.+.- .++.
T Consensus 51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 34455578999999999999998888888885 479999999999999999999999999988765431 0000
Q ss_pred -----------------------------------c--CchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchh
Q 040453 127 -----------------------------------A--RPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVL 168 (547)
Q Consensus 127 -----------------------------------~--~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~ 168 (547)
. +..++.+.+.-++.|.|.+..++.......+|+|. +|+...
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 0 01233344567788999999999999999999975 689999
Q ss_pred hhhHhhhhhhH
Q 040453 169 GILKGYVGLSG 179 (547)
Q Consensus 169 Gi~~a~~GLSa 179 (547)
|+......++.
T Consensus 211 ~i~~~~~~iG~ 221 (633)
T TIGR00805 211 GILESIAVFGP 221 (633)
T ss_pred HHHHHHHHhhh
Confidence 99877766655
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=108.16 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=97.1
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
..++.+|++.|+.+.+..++....-...........++ +|.++...........+...++.+.++.+.||+++| +
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----~ 295 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK----N 295 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----H
Confidence 35778999999998887666544433333333334443 454332222222222455667777888888877643 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhccchhhHHHHHHHhh-------cCCchhhhcchhccchhh
Q 040453 438 PLMLTIILLLSCIGHLLIAFNVP---GGLYVASIIIGFCFGAQWPLVFAIISELF-------GLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~~~---~~l~~~~~liG~~~G~~~~~~p~l~s~~F-------G~k~~g~nyg~~~~~~~~ 507 (547)
.+.+..++.+++.+++..... ..+++..++.|++.|.......++++|.= |.|+-|..+++..+..-+
T Consensus 296 --~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 296 --TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred --HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 333444555555554433221 22344567888998888888888877653 567778889888777777
Q ss_pred HHHHHHHHHHHHHhHH
Q 040453 508 GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~ 523 (547)
|+ .+++.+.|.+.+.
T Consensus 374 g~-aig~~i~g~~l~~ 388 (448)
T PRK09848 374 GQ-AIGGSIPAFILGL 388 (448)
T ss_pred HH-HHHHHHHHHHHHH
Confidence 76 5666677777654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=105.68 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=103.3
Q ss_pred HHHhhhccHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHH-HHHHhhhhhhchhhhhhccCCcHHHHHH
Q 040453 29 AIQVITGRWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLS-FFKDLGANVGILSGLINEITPPWVVLVL 106 (547)
Q Consensus 29 ~~~~~~~Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is-~~~~vG~~~gi~~G~l~D~~Gp~~~l~i 106 (547)
.-|+.++||++|++-.+.+++.+.. =.|+..+....+-|+ |.+...+.+ +..-+.--+++++=++.||+|-|.++++
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 4478999999999999999888875 567777777888888 544444443 3334455579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCchHHH-HH-HHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhH
Q 040453 107 GAVLNFFGYFMIWLAVTKKIARPQVWH-MC-LYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSG 179 (547)
Q Consensus 107 G~vl~~~Gy~l~~l~~~g~i~~~~~~~-l~-~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa 179 (547)
|++++++|..+=-.+..-.++ +..|. ++ .=..+.+.++-++...+-+-+.-||| |+|-.|..+-....=||.
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv 189 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV 189 (480)
T ss_pred HHHHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence 999999997543222222232 33442 22 23456677777777666688999995 678776655433332544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-07 Score=95.89 Aligned_cols=341 Identities=18% Similarity=0.187 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHHH
Q 040453 37 WFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGANVGILSGLINEITPPWVVLVLGAVLNFFG 114 (547)
Q Consensus 37 w~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~G 114 (547)
|..+.+=.....+.|+. |.-.--=|++.+.+|.|..+.-.+ +.........+++-..+.||+.+|.+++...+++.+|
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44444444455566665 777778899999999999998774 5555444456899999999999999998888887777
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCC
Q 040453 115 YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193 (547)
Q Consensus 115 y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~ 193 (547)
=.+..++ ++++.+.+-=++.+...+.+..-+...+.|-=| +|||.+.|++.++.-++- ++..-..++.++
T Consensus 92 n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~- 162 (394)
T COG2814 92 NLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQ- 162 (394)
T ss_pred HHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHH-
Confidence 6654433 567777665556666666665566666777775 589999999988765542 222211111111
Q ss_pred chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 040453 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273 (547)
Q Consensus 194 ~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll 273 (547)
+ -+-+..|. .++ +.-++. ++.++
T Consensus 163 ------~------------------------~GWR~~F~---~ia----~l~ll~--------------------~~~~~ 185 (394)
T COG2814 163 ------L------------------------FGWRATFL---AIA----VLALLA--------------------LLLLW 185 (394)
T ss_pred ------H------------------------hhHHHHHH---HHH----HHHHHH--------------------HHHHH
Confidence 0 01111222 110 000000 00000
Q ss_pred hhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCC
Q 040453 274 FFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPD 353 (547)
Q Consensus 274 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
. .-||.+..+ +.+
T Consensus 186 ~---------------------~lP~~~~~~---------------------------------------------~~~- 198 (394)
T COG2814 186 K---------------------LLPPSEISG---------------------------------------------SLP- 198 (394)
T ss_pred H---------------------hCCCccCCC---------------------------------------------CCC-
Confidence 0 001000000 000
Q ss_pred CCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc-CCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhh
Q 040453 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL-GYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAK 432 (547)
Q Consensus 354 ~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~-g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r 432 (547)
.+-.+..+.+|+++-|..+++.++..+..-+...=++|+.++. |++.+..+...-+++++..+|-+..|.+.|| .
T Consensus 199 -~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~-- 274 (394)
T COG2814 199 -GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-G-- 274 (394)
T ss_pred -cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-c--
Confidence 0012457889999999999999999998888888899999984 6777788999999999999999999999996 3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhcc-c-hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh----hcchhccchh
Q 040453 433 YKFPRPLMLTIILLLSCIGHLLIAFNVP-G-GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST----LYNFGGAASP 506 (547)
Q Consensus 433 ~~~~r~~~l~~~~~~~~i~~lll~~~~~-~-~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~----nyg~~~~~~~ 506 (547)
+|. .+....+++++..+.+.+... . .......+.|++.+........-.++ .-.++-.. |-..++++..
T Consensus 275 ---~~~-~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia 349 (394)
T COG2814 275 ---PRR-ALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA 349 (394)
T ss_pred ---chh-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH
Confidence 222 334444444555444433322 2 22334556777777777777777777 43444433 4445566676
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 040453 507 LGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~~ 524 (547)
+|+. +.|.++|+-
T Consensus 350 ~GA~-----lGG~v~~~~ 362 (394)
T COG2814 350 LGAA-----LGGLVLDAL 362 (394)
T ss_pred HHHH-----HHHHHHHhh
Confidence 6663 678888873
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-07 Score=100.77 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc----------chHHHHHHHHHhhh
Q 040453 405 STFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP----------GGLYVASIIIGFCF 474 (547)
Q Consensus 405 ~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~----------~~l~~~~~liG~~~ 474 (547)
..+.++.++...+.-...+++.+|+.+|. +.+....+.+++++++.+.+..... ..+.+..++.|++-
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge 396 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE 396 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence 44455666555555555556666666554 3445566777777777766543321 13556789999999
Q ss_pred ccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHH
Q 040453 475 GAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYL 511 (547)
Q Consensus 475 G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~ 511 (547)
+....+..+++.+.--.+.-|+-.|..+++..+|+++
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~ 433 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI 433 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999889999999988888887743
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-07 Score=104.07 Aligned_cols=156 Identities=9% Similarity=0.014 Sum_probs=96.2
Q ss_pred HHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHH
Q 040453 361 LQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~ 440 (547)
++.+|++.|+.+.+..++......+.........+....+....+...++.++...++-+++++++||++|| +.+
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk----~~~- 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR----ILW- 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----HHH-
Confidence 445588888887776655543222221111122222222233344555666788889999999999999865 222
Q ss_pred HHHHHHHHHHHHHHHH---hhcc---chHHHHHHHHHhhhccchhhHHHHHHHh-------hcCCchhhhcchhccchhh
Q 040453 441 LTIILLLSCIGHLLIA---FNVP---GGLYVASIIIGFCFGAQWPLVFAIISEL-------FGLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 441 l~~~~~~~~i~~lll~---~~~~---~~l~~~~~liG~~~G~~~~~~p~l~s~~-------FG~k~~g~nyg~~~~~~~~ 507 (547)
.+..++.+++.+.+. ...+ ..+++..++.|++.+..+.+.+++++|. .|.|.-|..|+......=+
T Consensus 300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 300 -AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred -HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 222223232322221 1111 2344567889999999999999999999 8888889899998776666
Q ss_pred HHHHHHHHHHHHHhHH
Q 040453 508 GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~ 523 (547)
+. .+++.+.|.++|.
T Consensus 379 ~~-al~~~i~g~~l~~ 393 (473)
T PRK10429 379 GS-AFAAFFIGVVLGL 393 (473)
T ss_pred HH-HHHHHHHHHHHHH
Confidence 65 5566677777653
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-07 Score=100.90 Aligned_cols=337 Identities=18% Similarity=0.138 Sum_probs=181.5
Q ss_pred HHHHHHhC--CChhhhHHH----HHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Q 040453 61 GDIKYALG--YDQTTLNLL----SFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH 133 (547)
Q Consensus 61 ~~L~~~~~--~sqs~l~~i----s~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~ 133 (547)
..+.++|+ .|.++++++ -.+-.+|+.+ .+..|.+.|++|+|..+++..++..++-.++.++.. . .++..
T Consensus 43 ~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~--~--~~~e~ 118 (485)
T KOG0569|consen 43 ETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS--A--PSFEM 118 (485)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--h--hhHHH
Confidence 44556788 455556653 2333455555 579999999999999999999998888777754432 2 23443
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHHhCCCch--HHHHHHHHHHHHHHH
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAFYGDDTK--SLILFIGWLPAAISF 210 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~--~fllfla~~p~~v~l 210 (547)
+.+==++.|..++......-+-...-=|++ ||.+.-...-++.++-.+-.++..-.+=++.+ .++++....|.++.+
T Consensus 119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 119 LILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 333234556666666556666666777975 99988777666655543333333322223333 466666666666655
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
+..+++ | |..++. . .. .+ +..+
T Consensus 199 ~~l~~~---P------ESPk~L---l----------~~---k~---------------------------------~~~~ 220 (485)
T KOG0569|consen 199 ALLPFL---P------ESPKYL---L----------IK---KG---------------------------------DEEE 220 (485)
T ss_pred HHHhcC---C------CCcchH---H----------HH---cC---------------------------------CHHH
Confidence 544443 1 122221 0 00 00 0000
Q ss_pred hhhc---cCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccH
Q 040453 291 KQMA---LNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSL 367 (547)
Q Consensus 291 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~ 367 (547)
++++ .+... +.++ + .++.. +|.+ +++.+++++.+++|.+|++
T Consensus 221 A~~sl~~y~G~~-~~~~-----------~-~e~~~------~e~~----------------~~~~~~~~~~sl~~~~~~~ 265 (485)
T KOG0569|consen 221 ARKALKFYRGKE-DVEA-----------E-IEEML------REIE----------------EEELEKKKQISLRQLLKNP 265 (485)
T ss_pred HHHHHHHHhCCC-cchh-----------H-HHHHH------HHHH----------------HhccccccCCcHHHHhcCc
Confidence 0000 00000 0000 0 00000 0000 0001112356788888765
Q ss_pred HH----HHHHHHHHHhhhchheeec-chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHH
Q 040453 368 DM----LILFFATICGVGGTLTAID-NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442 (547)
Q Consensus 368 ~F----wll~~~~~~~~g~Gl~~i~-n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~ 442 (547)
+. ++.....++-..+|...++ ....|.++.|++..++...-..+++.|....+.+.++.||++|| +. +.
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pL-ll 339 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PL-LL 339 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HH-HH
Confidence 44 3333344444555554444 57778888999888877778899999999999999999988854 33 33
Q ss_pred HHHHHHHHHHHHHH-------hhccchH---HHHHHHHHhhhccchhh-HHHHHHHhhcCCchhhhcch
Q 040453 443 IILLLSCIGHLLIA-------FNVPGGL---YVASIIIGFCFGAQWPL-VFAIISELFGLKYYSTLYNF 500 (547)
Q Consensus 443 ~~~~~~~i~~lll~-------~~~~~~l---~~~~~liG~~~G~~~~~-~p~l~s~~FG~k~~g~nyg~ 500 (547)
....++.+..+++. ......- ..+..+..+.|+.-.+- -..+++|+|..++=++-..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~ 408 (485)
T KOG0569|consen 340 ISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV 408 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence 33333333332221 1111111 22334555555555443 34578999987665544333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.4e-08 Score=103.21 Aligned_cols=157 Identities=21% Similarity=0.234 Sum_probs=106.3
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
.+++..|+++|+.+++..++......+.........+. ++.+ ...+....+..+...++-+++++++||++||+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~---- 291 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK---- 291 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee----
Confidence 35778889999998888777644433333344444444 4433 45566777889999999999999999998763
Q ss_pred hHHHHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHhhhccchhhHHHHHHHhh-------cCCchhhhcchhccchhh
Q 040453 438 PLMLTIILLLSCIGHLLIAFN---VPGGLYVASIIIGFCFGAQWPLVFAIISELF-------GLKYYSTLYNFGGAASPL 507 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~---~~~~l~~~~~liG~~~G~~~~~~p~l~s~~F-------G~k~~g~nyg~~~~~~~~ 507 (547)
.+....++.+++.+++... ....+++..++.|+++|..+.+..++.+|.- |.|.-|..+++.....-+
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 292 --VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred --ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 2233334444444433222 2345667889999999999999999999876 467788888887665555
Q ss_pred HHHHHHHHHHHHHhHH
Q 040453 508 GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 508 gs~~l~~~l~G~~yd~ 523 (547)
+. .++..+.|.+.+.
T Consensus 370 ~~-~la~~i~g~~l~~ 384 (428)
T PF13347_consen 370 GQ-GLAGAIVGLLLAL 384 (428)
T ss_pred HH-HHHHHHHHHHHHH
Confidence 54 4455555555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-06 Score=94.49 Aligned_cols=127 Identities=11% Similarity=0.033 Sum_probs=88.0
Q ss_pred ccccHHHHHH--hCCChhhhHHHHHHHHhhhh-hhchhhhhhcc-CCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 57 SLYSGDIKYA--LGYDQTTLNLLSFFKDLGAN-VGILSGLINEI-TPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 57 Siys~~L~~~--~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~-~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
+....-++++ +|+|+.|...+.....++.. ..+++|.+.|| +|+|.++.+|.++..+|+.++.+. .+++
T Consensus 31 ~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-------~~~~ 103 (475)
T TIGR00924 31 GILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-------IYPD 103 (475)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------ccHh
Confidence 3344456777 99999998886444444444 57899999999 899999999999999998876432 1233
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCC----CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPE----SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~----~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.+.+...+.+.|.+.+..+......++||+ +|+.+.++.-...-+++++=..+...+.
T Consensus 104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 344334445667777666666677799975 3888888876666666655544444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=101.95 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=163.8
Q ss_pred HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHH-HHHHHHHHHHHhccccCchHHHHHHHHHH
Q 040453 63 IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLN-FFGYFMIWLAVTKKIARPQVWHMCLYICV 140 (547)
Q Consensus 63 L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~-~~Gy~l~~l~~~g~i~~~~~~~l~~~~~l 140 (547)
+++..+....|++.+.+...++=. ..+|+|++.||+++...+..-+++. .++++..| . .+++.++..-++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~--~s~~~~ialr~l 143 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------V--HSFPGLIALRFL 143 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------H--hhhHHHHHHHHH
Confidence 668888889999998666556554 4789999999999555443322221 22222111 2 345666655555
Q ss_pred hhcccccccchhhhhhhhcC-CCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhheeeec
Q 040453 141 GANSQSFANTGSLVTCVKNF-PESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISFAFLRTIRIL 219 (547)
Q Consensus 141 gg~g~~~~~ta~l~t~~~nF-P~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~li~~~~ir~~ 219 (547)
.|.-++....+.......|| +++||+..|+.-+..++|+.+=+.+...+++=|...
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~----------------------- 200 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG----------------------- 200 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC-----------------------
Confidence 55555666667777788889 568999999999999999877777777765411100
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCC
Q 040453 220 KVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPS 299 (547)
Q Consensus 220 ~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~ 299 (547)
...+-+-.|. +.+ +..++..++- ++.+|- +|.
T Consensus 201 ---~~~gW~~~Fi---I~G----~i~~~~gi~~-----------------------f~~lp~---------------~P~ 232 (495)
T KOG2533|consen 201 ---GLAGWRWLFI---IEG----VITLVLGIVV-----------------------FFFLPD---------------NPS 232 (495)
T ss_pred ---CcCCceeehh---HHH----HHHHHHHheE-----------------------EEEecC---------------Chh
Confidence 0001111111 111 1011110000 011110 010
Q ss_pred cccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHh
Q 040453 300 VEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICG 379 (547)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~ 379 (547)
.....+ +.+.+.. .. +..+.+. +...++ .+-..++|++|++..|.+.+..+|.
T Consensus 233 ~~~fl~------~~ek~~~--~~-------~~~~~~~---------~~~~~~---~~~~~~~~a~~dp~vw~~~l~~~~~ 285 (495)
T KOG2533|consen 233 KAWFLT------DEEKELV--VE-------RLRESPS---------GGIENK---FKWKGFKEALKDPGVWPFSLCYFFL 285 (495)
T ss_pred hccccc------hHHHHHH--HH-------HHHhccC---------CCcccc---cCHHHHHHHHhchhHHHHHHHHHHH
Confidence 000000 0000000 00 0000000 000000 1235789999999999999999998
Q ss_pred hhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHH
Q 040453 380 VGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLI 455 (547)
Q Consensus 380 ~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll 455 (547)
...--...+-+..+.++ .|++..++..+...+.+...+|=+++|++|||+. .....|..+.....+...+++..+
T Consensus 286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~-~~~~~~~~~~~~~~~~~~~g~~~l 361 (495)
T KOG2533|consen 286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK-TIFARRLLFIVFLCLYAIIGAISL 361 (495)
T ss_pred hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766677777778888 4577888888999999999999999999999963 001124445555666667774433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-06 Score=94.81 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=82.7
Q ss_pred cccHHHHHHhCCChhhhHHHH-HHHHhhhhhhchhhhhhcc-CCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Q 040453 58 LYSGDIKYALGYDQTTLNLLS-FFKDLGANVGILSGLINEI-TPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMC 135 (547)
Q Consensus 58 iys~~L~~~~~~sqs~l~~is-~~~~vG~~~gi~~G~l~D~-~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~ 135 (547)
....-+++.+|+++++.+++. ....+.....+++|++.|| +|+|.++++|.++..+|+.+..+. .+.+ ..+.
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~~~-~ll~ 109 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LLKP-DLIF 109 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----ccch-hHHH
Confidence 344457788999999988864 3333433457899999999 999999999999999999877543 1111 2232
Q ss_pred HHHHHhhcccccccchhhhhhhhcCCCC---CcchhhhhHhhhhhhHHHH
Q 040453 136 LYICVGANSQSFANTGSLVTCVKNFPES---RGVVLGILKGYVGLSGAII 182 (547)
Q Consensus 136 ~~~~lgg~g~~~~~ta~l~t~~~nFP~~---RG~v~Gi~~a~~GLSa~I~ 182 (547)
+..++.+.|.+...........++||++ |+.+-++.-....+++++-
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 3344556777777777777788999754 3666666666666666543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-07 Score=92.84 Aligned_cols=349 Identities=14% Similarity=0.113 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHH-HHhhhhhhchhhhhhccCCcHHHHHHHHHHHHHH
Q 040453 37 WFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFF-KDLGANVGILSGLINEITPPWVVLVLGAVLNFFG 114 (547)
Q Consensus 37 w~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~-~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~G 114 (547)
|+.+.+-+++.+..=. .-.-+--=+++++++|.|-++...+++. ....+.+++....+..|+|++..+..+-++.++|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555554444443332 2334445567788999999987776432 2233467899999999999999999999999998
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhh-hcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhCCC
Q 040453 115 YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCV-KNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGDD 193 (547)
Q Consensus 115 y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~-~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~ 193 (547)
-.+= .. .+.+.+.+=..+.|.|+...| +-+...+ |+||+|-|..+|+-..-.++++++-+.+..-+-+..
T Consensus 91 ~~iR------~~--~~~~~L~~gt~l~G~gIav~n-VLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 91 ILIR------SL--GGLPLLFLGTLLAGAGIAVIN-VLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHHH------hc--ccHHHHHHHHHHHHhhHHHHH-HhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 5421 11 123334444456666766665 3444433 789999999999987777777655542111110000
Q ss_pred chHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 040453 194 TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLL 273 (547)
Q Consensus 194 ~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll 273 (547)
.+-+.... ..+... .+ .+++
T Consensus 162 -------------------------------~gW~~aL~-------~WAl~a----ll-----------------Al~~- 181 (395)
T COG2807 162 -------------------------------GGWRGALG-------FWALLA----LL-----------------ALLI- 181 (395)
T ss_pred -------------------------------ccHHHHHH-------HHHHHH----HH-----------------HHHH-
Confidence 00000000 000000 00 0000
Q ss_pred hhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCC
Q 040453 274 FFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPD 353 (547)
Q Consensus 274 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (547)
|-+...| + ..+ + . +.+
T Consensus 182 --------------WlPq~~r---~----~~~----------~----~----------------------------~~~- 197 (395)
T COG2807 182 --------------WLPQALR---E----QAA----------S----I----------------------------ATK- 197 (395)
T ss_pred --------------Hhhhccc---c----ccc----------c----c----------------------------ccc-
Confidence 1110000 0 000 0 0 000
Q ss_pred CCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 354 RGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 354 ~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
.++....+|++.=|.+-+-+-+.+..--.++.=+.+|++++|+++.+++.++++..+.....-+..-++-+|.
T Consensus 198 ---~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~---- 270 (395)
T COG2807 198 ---LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS---- 270 (395)
T ss_pred ---cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 0111235688888988888877777777788889999999999999999999999999999999988888863
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhc-chh-ccchhhHHHH
Q 040453 434 KFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLY-NFG-GAASPLGSYL 511 (547)
Q Consensus 434 ~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~ny-g~~-~~~~~~gs~~ 511 (547)
+=+|++ .....+++.++..-+...+....++-.+++|++.|+.|.+.=.++.+..-..+-...- |+. ..++.+. .
T Consensus 271 ~n~r~~-~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA--a 347 (395)
T COG2807 271 KNQRPL-VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA--A 347 (395)
T ss_pred cccchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH--h
Confidence 223444 3344455555554333434344444479999999999999999988887644443332 222 4556665 3
Q ss_pred HHHHHHHHHhHHHHhhc
Q 040453 512 LNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 512 l~~~l~G~~yd~~~~~~ 528 (547)
++|.++|.++|....-+
T Consensus 348 ~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 348 FGPWLFGFLHDATGSWS 364 (395)
T ss_pred hhhhhHhHHHHhcCChH
Confidence 47889999999876644
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.3e-07 Score=92.40 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=113.2
Q ss_pred HhhccHHHHHHHHHHHHhhhchheeecchhhhhhh---cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChh
Q 040453 362 QALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS---LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRP 438 (547)
Q Consensus 362 q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a---~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~ 438 (547)
+.+|++++|+..+.+++-.|....+.+......++ .|.++.+++..++.+..+-.+||++.++++||+++| |
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~----~- 209 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG----R- 209 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----H-
Confidence 45788999999999999888887777767777754 488888889999999999999999999999988754 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHH
Q 040453 439 LMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 439 ~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
.+.+..++.+++.++...........+..++|++.+..+...-+...+.++ ++-++.-+++.. ..+|. .+.|.+.|
T Consensus 210 -~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~~~-~~~Gg-~i~P~l~G 285 (310)
T TIGR01272 210 -YLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGILCL-AIVGG-AIVPLLQG 285 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHH-HHhcc-hHHHHHHH
Confidence 233333344444433333222223346778999999999998888889887 556666666543 44666 56788999
Q ss_pred HHhHHH
Q 040453 519 HLYDKE 524 (547)
Q Consensus 519 ~~yd~~ 524 (547)
.+.|+.
T Consensus 286 ~lad~~ 291 (310)
T TIGR01272 286 SLADCL 291 (310)
T ss_pred HHHHhc
Confidence 999965
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.6e-07 Score=96.37 Aligned_cols=129 Identities=16% Similarity=0.035 Sum_probs=97.5
Q ss_pred HHhhccccccccccHHHHHHhCCChhh-hHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Q 040453 47 MAAAGATYMFSLYSGDIKYALGYDQTT-LNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTK 124 (547)
Q Consensus 47 ~l~~Gt~Y~fSiys~~L~~~~~~sqs~-l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g 124 (547)
..+.=.--..++-.|.|++.+|+|.+| .+.+..+...+= ..-+++|++.||+|+|+++.++.+...+-..++.++
T Consensus 36 GF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--- 112 (511)
T TIGR00806 36 GFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--- 112 (511)
T ss_pred HHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---
Confidence 334444456777889999999999999 666644433333 357999999999999999999998877776655332
Q ss_pred cccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHH
Q 040453 125 KIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIIT 183 (547)
Q Consensus 125 ~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s 183 (547)
.+++.+.+.-++-|.+.+... +......+|||. +|++++|+..+..-+|.++-.
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245666666666677888777 999999999985 799999999888777665544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-05 Score=89.77 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHhhc--cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHH
Q 040453 35 GRWFMVFASFLIMAAAG--ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 35 ~Rw~~l~a~~~v~l~~G--t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
.|.+...+++.++.++. ..+..+.--+++-..+|=+ .+..+++++-.++.. .-++.|.+.|.+|+|..+++|.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 35555544444444433 1222222224555666643 556667666666664 3678999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHH-HH
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYR-AF 189 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~-~~ 189 (547)
.+|..+.. .. .+.-.++.=..+.|.|.+......+. ...--|+ +|+...++....+-. ....+.... .+
T Consensus 119 vvG~Iv~a-----tA--~~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~~~~i~-~~~~~~~ia~~~ 189 (599)
T PF06609_consen 119 VVGSIVCA-----TA--QNMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIASIPFII-TTWISPLIAQLF 189 (599)
T ss_pred HhHHHHhh-----cC--CcHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHHHHHHh-hhcccHHHHHHh
Confidence 99976542 22 23333444344444454444333322 3444575 477666554333211 111122222 22
Q ss_pred hCC-CchHHHHHHHHHHHHHHHHhhheeeecccc
Q 040453 190 YGD-DTKSLILFIGWLPAAISFAFLRTIRILKVI 222 (547)
Q Consensus 190 f~~-~~~~fllfla~~p~~v~li~~~~ir~~~~~ 222 (547)
... +=+--+++..+...+..++.+++.+|++..
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~ 223 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRA 223 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 222 122223333444444444556677776654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.6e-06 Score=89.68 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=102.0
Q ss_pred cHHHhhccHHHHHHHH-HHH-Hhhhchheeecchhhh-hhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCC
Q 040453 359 TILQALFSLDMLILFF-ATI-CGVGGTLTAIDNLGQI-GGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKF 435 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~-~~~-~~~g~Gl~~i~n~~~I-~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~ 435 (547)
..++.+|+++.|...+ .++ ...+.+. .++.-.. .+.+|.++...+...+..++++.+|-...+.+.+++
T Consensus 244 ~l~~~l~~~~i~~~l~fifl~~~~~~~~--~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~------ 315 (468)
T TIGR00788 244 GLRGAIQLLEIAKPLIFIFLSYANLPGA--SGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF------ 315 (468)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHhhcCCC--CceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC------
Confidence 3566788899986333 232 2233332 2221111 135788888888888888877777766666554432
Q ss_pred ChhHHHHHHHHHHHHHHHHHH---------hhcc-c-hHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 436 PRPLMLTIILLLSCIGHLLIA---------FNVP-G-GLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 436 ~r~~~l~~~~~~~~i~~lll~---------~~~~-~-~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
+....+.+..++.+++.++.. .+.+ . .+....++.++++|..+...-.++++.=..++-|+.|++....
T Consensus 316 ~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 316 PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence 344455566666555543321 1111 1 2234578899999999999999999999888889999999888
Q ss_pred hhhHHHHHHHHHHHHHhHHHH
Q 040453 505 SPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 505 ~~~gs~~l~~~l~G~~yd~~~ 525 (547)
..+|. .+++.+.|.++|.-.
T Consensus 396 ~~lg~-~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 396 LHLGS-SVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHH-HHHHHHHHHHHHHcC
Confidence 88887 566777787876643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=99.16 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=108.1
Q ss_pred HHhhccHHHHHHHHHHHHhhhc-h--heeecc-hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 361 LQALFSLDMLILFFATICGVGG-T--LTAIDN-LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~-G--l~~i~n-~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
.+.-.++..|.+++.+.++... + ..+++. +.++..+.|.+..+.+.+.++..++..+|.+++|+++||++||
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR---- 232 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK---- 232 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----
Confidence 3444678888777655544322 1 122333 3444567888888888999999999999999999999998865
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHH
Q 040453 437 RPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVR 515 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~ 515 (547)
..+.+..++.+++.++..+.. ...+++.-++.|++.|+...+.+.+++|++..++-|+.++++.+...+|. ++++.
T Consensus 233 --~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~-ila~~ 309 (742)
T TIGR01299 233 --QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG-IYAAA 309 (742)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 234444444445554444433 24456677899999999999999999999999999999999887777776 44444
Q ss_pred HHHH
Q 040453 516 VAGH 519 (547)
Q Consensus 516 l~G~ 519 (547)
++..
T Consensus 310 la~~ 313 (742)
T TIGR01299 310 MAWA 313 (742)
T ss_pred HHHH
Confidence 4433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=92.08 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=84.5
Q ss_pred HHHHhCC--ChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH
Q 040453 63 IKYALGY--DQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYIC 139 (547)
Q Consensus 63 L~~~~~~--sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~ 139 (547)
.+++... .++|+.++--++.+-.. +..+.|.+.||+|.|..+++|-+..++.-.++. +. .+++.+.+.=.
T Consensus 95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa--fg-----~sy~~l~vAR~ 167 (464)
T KOG3764|consen 95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA--FG-----NSYPMLFVARS 167 (464)
T ss_pred chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH--Hc-----chhHHHHHHHH
Confidence 4444444 44555565444445443 589999999999999999999998887766553 22 34665555667
Q ss_pred HhhcccccccchhhhhhhhcCCCC--CcchhhhhHhhhhhhH
Q 040453 140 VGANSQSFANTGSLVTCVKNFPES--RGVVLGILKGYVGLSG 179 (547)
Q Consensus 140 lgg~g~~~~~ta~l~t~~~nFP~~--RG~v~Gi~~a~~GLSa 179 (547)
+-|.|+.+++|+.+.-.++-||++ ||.+.|+..+|.+||-
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~ 209 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGV 209 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccc
Confidence 889999999999999999999974 7999999999999873
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.9e-07 Score=95.69 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
++.+|++++.+++......++......+.+++|.++.+.+..++...+...++.+.+|+++||++|| | .+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r----~--~~~~~~ 82 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR----N--IFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----H--HHHHHH
Confidence 3578999998888766666667778888999999888888888999999999999999999999865 2 223334
Q ss_pred HHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 446 LLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 446 ~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++..++.++...... ..+++.-++.|++.|..+.....+++|++..++.++.+|+...+..+|. .+++.+.|.+.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~g~l~~~~ 161 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP-LLGPALGGLLVEYA 161 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhc
Confidence 444444444433332 3455677899999999999999999999999999999999887777776 66777888877653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.8e-05 Score=80.27 Aligned_cols=161 Identities=21% Similarity=0.252 Sum_probs=103.6
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhhcCC-CCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGSLGY-PKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~g~-~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
+.++.+|+|++...++..++. +......++...+ .+++|. +...... +.+ .+.+.-+..=.+++|+.||++..
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~-~~~~~~~~~f~~~yl~~~gg~~~~~~g~---~~~-l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLI-GISHAAYYTFFSIYLQELGGYSGSTIGI---LWA-LGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhhHHHH---HHH-HHHHHHHHHHHHHHHHHHhcCHH
Confidence 447899999998766655443 4444455555554 677873 3322222 222 23345777778889999887653
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-ccchHHH-----HHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc-cchhhHH
Q 040453 437 RPLMLTIILLLSCIGHLLIAFN-VPGGLYV-----ASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG-AASPLGS 509 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~-~~~~l~~-----~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~-~~~~~gs 509 (547)
+ ++.+..+..++=..+++.. .+....+ +-.+=|++||..+......+.+....+.-++--++.. +..++|.
T Consensus 274 ~--ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 274 W--LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG 351 (400)
T ss_pred H--HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence 3 4444445545444455544 2322211 2345799999999999999999998777677766653 3456776
Q ss_pred HHHHHHHHHHHhHHHHhh
Q 040453 510 YLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 510 ~~l~~~l~G~~yd~~~~~ 527 (547)
.++..+.|.+||+...+
T Consensus 352 -~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 352 -AIGSLIGGWLYDAFGAR 368 (400)
T ss_pred -HHHHHHHHHHHHHhcch
Confidence 56778999999987654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-09 Score=116.61 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=74.0
Q ss_pred hhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccC-chHHHHHHHHHHhhcccccccc
Q 040453 73 TLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIAR-PQVWHMCLYICVGANSQSFANT 150 (547)
Q Consensus 73 ~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~-~~~~~l~~~~~lgg~g~~~~~t 150 (547)
+..++.....+|..+ +++.|.+.||+|+|.++.++.++..+|..+...+ +. .+++.++..-++.|.+.+..++
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-----PSYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccc
Confidence 345566677788876 6899999999999999999999999997655332 10 1455555555566777777666
Q ss_pred hhhhhhhhcCC-CCCcchhhhhHhhhhhhHH
Q 040453 151 GSLVTCVKNFP-ESRGVVLGILKGYVGLSGA 180 (547)
Q Consensus 151 a~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~ 180 (547)
.+..-....=| ++||....+...+..+|..
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~ 152 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGIL 152 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 66666666665 4799999988777766643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-05 Score=86.76 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=87.8
Q ss_pred ccccccHHHH-HHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 55 MFSLYSGDIK-YALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 55 ~fSiys~~L~-~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
.-+.|+.... +.++.+....++......+|..+ +++.|.+.|++|+|.+++++.++..++-... ... ++++
T Consensus 100 ~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-----a~a--~~~~ 172 (521)
T KOG0255|consen 100 GSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-----AFA--PNYW 172 (521)
T ss_pred CCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-----HHh--CcHH
Confidence 3445555554 55666666666666666677765 6899999999999999999888877664332 222 5678
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcC-CCCCcchhhhhHhhhhhhHHHHH
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNF-PESRGVVLGILKGYVGLSGAIIT 183 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nF-P~~RG~v~Gi~~a~~GLSa~I~s 183 (547)
.++.+=++.|.+.+..++.+....+.++ |++|+.+..+ ..++-..+.+..
T Consensus 173 ~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~ 223 (521)
T KOG0255|consen 173 MFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLP 223 (521)
T ss_pred HHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHH
Confidence 7888888888888888889999999999 5789999888 555444443333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=93.50 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=114.3
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
+++||.+++..++..-...++...+.++.++++.++.+.+..++.+.+...+.-+..|++.||++||+ ++....
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~------vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR------VMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch------hhHHHH
Confidence 57899999987776554445666677788888887777888899999999999999999999988663 333333
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 446 LLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 446 ~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.+++.++..... ..++.-++.|++.|......-+++.|++..++.++..+++.....++. +++|.+.|.++|.
T Consensus 76 ~~~~~~~~~~~~~~--~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~-~~Gp~lgG~l~~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGI--HPLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAI-LLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33333333322221 124456789999999999999999999999999999999988777776 7788888888875
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00015 Score=79.79 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=119.9
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
|+++.-|.++.+.+.++.++-.-.-.+++...+-..+ .+|++..+.....-+..+..+.|-+++|++.||++.|.+ |
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--~ 350 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--R 350 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--H
Confidence 6777778888888777766654333344444444444 489988888888889999999999999999998875421 2
Q ss_pred hHHHHHHHHHHHHHHHHHH--------hhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 438 PLMLTIILLLSCIGHLLIA--------FNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~--------~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
.++....+..++....+. ......+++..+++|+..|+..+...++.+|+=-..+-++-||+..+..=..+
T Consensus 351 -~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 351 -TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 222222222222222221 11234588889999999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHHHhHHHHhh
Q 040453 510 YLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 510 ~~l~~~l~G~~yd~~~~~ 527 (547)
.++|.++|.+-|.-.+.
T Consensus 430 -~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 430 -WLGPLLFGLITDATGSQ 446 (477)
T ss_pred -HHHHHHHHHHHHHhCCc
Confidence 67899999999988643
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=86.36 Aligned_cols=149 Identities=28% Similarity=0.336 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 370 LILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 370 wll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
|.+....++..............+.++.+.++.+.+...++..+...++++.+|+++||++||+ .+.+..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~------~~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR------VLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch------hhHHHHHHHH
Confidence 4444444444333344455566677788888888899999999999999999999999987552 4455555556
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 450 IGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 450 i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
++.++...... ..+++..++.|++.+......++++.|++..|+.++.+++......+|. .+++.+.+.+.|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 151 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG 151 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 66655444332 3456678999999999999999999999999999999999998888888 667888888888653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=88.59 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHHhhhc-hheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 366 SLDMLILFFATICGVGG-TLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~-Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
+++++.....+.+.... ..++......+.+++|.++.+.+...++..+.+.++.+..|+++||++|| ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~ 76 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR------PVLLLG 76 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHH
Confidence 34455444444443333 34555667778889999998999999999999999999999999988754 234445
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 445 LLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 445 ~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.++.+++.++...... ..+++..++.|++.+.......+++.|++..++-++.+|+......+|. .+++.+.+.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~ 155 (385)
T TIGR00710 77 LFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP-AVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555666655544432 3455677899999999999999999999998999999999888888876 5677788877775
Q ss_pred H
Q 040453 524 E 524 (547)
Q Consensus 524 ~ 524 (547)
.
T Consensus 156 ~ 156 (385)
T TIGR00710 156 L 156 (385)
T ss_pred c
Confidence 4
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=91.22 Aligned_cols=132 Identities=11% Similarity=0.180 Sum_probs=106.0
Q ss_pred eeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchH
Q 040453 385 TAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGL 463 (547)
Q Consensus 385 ~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l 463 (547)
+....+.++.+++|.++.+.+..+++..+...++++..|.++||++|| ..+....++.+++.++..... ...+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR------YVVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH------HHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 344567788899999999999999999999999999999999988754 345555555566665554443 2456
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 464 YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 464 ~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.-++.|++.|..+...+.+++|+|..|+.++..++...+..+|. .+++.+.+.+.+.
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~~~l~~~ 170 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL-VIAAPLGSFLGEL 170 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 6777999999999999999999999999999999999888777776 5677777777664
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00036 Score=77.08 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=82.5
Q ss_pred cccccccccHH-HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccC-CcHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 040453 52 ATYMFSLYSGD-IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEIT-PPWVVLVLGAVLNFFGYFMIWLAVTKKIAR 128 (547)
Q Consensus 52 t~Y~fSiys~~-L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~-Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~ 128 (547)
+.|.+..+-+. +++++|+++.+...+........+ ..+++|++.||+ |+|.++++|.++..+|+.++.. .+. .
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~~~--~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--SEI--H 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--hhc--c
Confidence 45655544443 567799999998886544445555 467999999999 9999999999999999876532 111 1
Q ss_pred chHHHHHHHHHHhhcccccccchhhhhhhhcCCC---CCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 129 PQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE---SRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 129 ~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~---~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
.....+.+.. ...|.+......-....+.||+ +|..+.++.-....+++.+-..+...+
T Consensus 100 ~~~~~l~l~l--i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 100 PSFLYLSLAI--IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred hhHHHHHHHH--HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112 2233333332223335688985 488888887766667665554444444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00026 Score=78.32 Aligned_cols=338 Identities=17% Similarity=0.113 Sum_probs=193.9
Q ss_pred hhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccc
Q 040453 72 TTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANT 150 (547)
Q Consensus 72 s~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~t 150 (547)
++.+++.....+|+.+ .++.|++.|++|+|.+++++.+++.+|+.+...+. +++.+..--++.|.|.|....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhccchhhhhh
Confidence 3457888888888875 79999999999999999999999999998876542 455555555666777777653
Q ss_pred hhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHhhheeeecccccCCcc
Q 040453 151 GSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDD--TKSLILFIGWLPAAISFAFLRTIRILKVIRQPNE 227 (547)
Q Consensus 151 a~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~--~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~ 227 (547)
.+-+-...-=|. .||..+.+..-.+. .+..++.+...+.+++ .=++++.++..|.++..++++++- +
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~p---e------ 231 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLP---E------ 231 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCC---C------
Confidence 333333333465 79999998877777 5566666666666654 234677777778777777644442 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCC
Q 040453 228 LKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKP 307 (547)
Q Consensus 228 ~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (547)
..+.. .- .. +...+...+ ..+.++ ..++.+. + .+..+.
T Consensus 232 sp~~L---~~--------------~g--------~~~~a~~~l-~~l~g~--------~~~~~~~-----~-~~~~~~-- 269 (513)
T KOG0254|consen 232 SPRWL---IE--------------KG--------RLEEAKRSL-KRLRGL--------SPEDVEV-----E-LELLKI-- 269 (513)
T ss_pred ChHHH---HH--------------cC--------ChHHHHHHH-HHHhCC--------CCcchHH-----H-HHHHHH--
Confidence 11111 00 00 000000000 000000 0000000 0 000000
Q ss_pred CcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheee
Q 040453 308 SQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAI 387 (547)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i 387 (547)
+ ...+ . + . .+.+. ...|.-. ...+++.++.+.+..+.-...-..++
T Consensus 270 -------~---~~~~----~--~--------~--------~~~~~-~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~ 315 (513)
T KOG0254|consen 270 -------K---LLVE----A--E--------V--------AEGKA-SWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVF 315 (513)
T ss_pred -------H---HHHh----h--h--------c--------ccccc-cHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEE
Confidence 0 0000 0 0 0 00000 0000000 23456677777777777776667888
Q ss_pred cchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc--------
Q 040453 388 DNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-------- 459 (547)
Q Consensus 388 ~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-------- 459 (547)
+-..+|.+..|..... .....+.++.|.++=++..++-||++|| ..+......+.++++++....
T Consensus 316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr------~lll~s~~~m~~~~~~~~~~~~~~~~~~~ 388 (513)
T KOG0254|consen 316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR------KLLLFGAAGMSICLVILAVVGVFALYYPN 388 (513)
T ss_pred eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence 8899999999886544 5566788888999988999999988654 355555566666665443211
Q ss_pred -c---chH-HHHHHHHHhhhccchhhHHH-HHHHhhcCCchhhhcchhccchhhHH
Q 040453 460 -P---GGL-YVASIIIGFCFGAQWPLVFA-IISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 460 -~---~~l-~~~~~liG~~~G~~~~~~p~-l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
. ..+ .....+.=.+|...++-.|. +.+|.|-.|.=++-.++.....-+.+
T Consensus 389 ~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 389 SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWN 444 (513)
T ss_pred cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHH
Confidence 0 112 22334444466666676776 66999988777766666544443333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=90.43 Aligned_cols=156 Identities=21% Similarity=0.139 Sum_probs=95.2
Q ss_pred HHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhH
Q 040453 361 LQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPL 439 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~ 439 (547)
.++.|+++||.+++.+++...+-..+........++ +|.++.+.+..+++..+...++++.+|+++||+++| |..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r----~~~ 79 (420)
T PRK09528 4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK----KHL 79 (420)
T ss_pred chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHH
Confidence 346788999999887777665433455555555555 899999999999999999999999999999999865 222
Q ss_pred HHHHHHHHHHHHHHHH-Hhhc--c----chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHH
Q 040453 440 MLTIILLLSCIGHLLI-AFNV--P----GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLL 512 (547)
Q Consensus 440 ~l~~~~~~~~i~~lll-~~~~--~----~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l 512 (547)
...........+.+.. .... . ....++.++.|.++..........+.+ + .++.|..||.......+|. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~-~i 156 (420)
T PRK09528 80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGW-AL 156 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHH-HH
Confidence 2211111111111111 1110 0 012234455566666655666666543 3 3556667776655555555 45
Q ss_pred HHHHHHHHhHH
Q 040453 513 NVRVAGHLYDK 523 (547)
Q Consensus 513 ~~~l~G~~yd~ 523 (547)
++.+.|.++|.
T Consensus 157 ~~~~~g~l~~~ 167 (420)
T PRK09528 157 CAFIAGILFNI 167 (420)
T ss_pred HHHHHHHHHhc
Confidence 56667777663
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=90.07 Aligned_cols=150 Identities=8% Similarity=0.024 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
++++|++.+..++....--++..-+.+.. +++|.++.+.+..+++..+...++++..|+++||++||+ .+.+.
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~------~~~~~ 79 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR------YMLLA 79 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------hHHHH
Confidence 45688888876665444344444455555 468999999999999999999999999999999988652 23333
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 445 LLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 445 ~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
.++..++.+++.+.+. ..+++...+.|.+++......+..++|.++.++.++.+|+......+|. .+++.+.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~-~igp~l~~~l~~ 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGW-TVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444455544444332 2334445677777777788889999999998888988888876666665 556667776664
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-06 Score=88.32 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
++++|.+....++..-...++.....++.++.|.+..+.+..+++..+...++++.+|++.||++|| ..+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~ 75 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK------HILLFLV 75 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH------HHHHHHH
Confidence 4567777776555555545666677888889999888899999999999999999999999987754 3444555
Q ss_pred HHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 446 LLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 446 ~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.+++.++....+. ..+++.-++.|++.|......+.++.|++..++.++..+....+..++. .+++.+.+.+.|.
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~ 153 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVAN-LLGIPLGTYLSQE 153 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHH-HHhccHHHHHhhh
Confidence 556666665555443 4566677999999999999999999999998888888888777777766 4556666666653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=87.37 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHH
Q 040453 369 MLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLS 448 (547)
Q Consensus 369 Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~ 448 (547)
||.++...++......+.......+..+.+.++.+.+...++..+...++.+.+|+++||++|| | .+....++.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r----~--~~~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK----K--VMIGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh----H--HHHHHHHHH
Confidence 4556665555444333444455566777888888889999999999999999999999998765 2 333333333
Q ss_pred HHHHHHHHhh------ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 449 CIGHLLIAFN------VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 449 ~i~~lll~~~------~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
.++.++.... ....+++..++.|++.|.......++++|++..++.++.+++...+..+|. ++++.+.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~ 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY-IVGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333322221 123456678899999999999999999999999999999999988888887 667888888877
Q ss_pred HHH
Q 040453 523 KEA 525 (547)
Q Consensus 523 ~~~ 525 (547)
...
T Consensus 154 ~~g 156 (365)
T TIGR00900 154 TLG 156 (365)
T ss_pred Hhh
Confidence 654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=79.54 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=80.2
Q ss_pred hhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccc-hHHHHH
Q 040453 390 LGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPG-GLYVAS 467 (547)
Q Consensus 390 ~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~-~l~~~~ 467 (547)
+.-+.+ .++.++..-+.+.+.++++..+|-+..+.+.+++ +. ...+....+..+++++.+...... ...+..
T Consensus 241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~----~~--~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL----SS--RRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc----Cc--chhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 333444 3676666677778888877777777666655433 22 224444555566666655554432 234567
Q ss_pred HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHh
Q 040453 468 IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAK 526 (547)
Q Consensus 468 ~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~ 526 (547)
++.|+++......+-+++-+.--.+.-|+.+++..+....+ ..++..+.|.+-|.-+.
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~-~~lGsll~G~la~~~g~ 372 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGG-MPLGSLLWGFLADHFGV 372 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCH
Confidence 88899998888888777777777777787777654433222 24445567777666544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=90.08 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhh---cCCCCcchhhHHHHHHHHHhhhhhhcchhhhh-hhhhcCCChhHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGS---LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI-FLAKYKFPRPLMLT 442 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a---~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~-l~~r~~~~r~~~l~ 442 (547)
+.+|.++...++-..+--++..++....++ +|.+..+++..++.+++...++++..|+++|| +++| ..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~------~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK------KTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH------HHHH
Confidence 446777776666444444556667777664 78888899999999999999999999999998 6644 3556
Q ss_pred HHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCc---hhhhcchhccchhhHHHHHHHHHHH
Q 040453 443 IILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKY---YSTLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 443 ~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~---~g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
+..++.+++++++..... ..++++.++.|++.|......+++++|.|..++ -++-+++.+.+.-+|. ++++.+.|
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~-~ig~~l~g 162 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS-FISPLLAG 162 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH-HHHHHHHH
Confidence 666677777776665432 345567788999999999999999999998654 5556777777777776 56777778
Q ss_pred HHhHH
Q 040453 519 HLYDK 523 (547)
Q Consensus 519 ~~yd~ 523 (547)
.+.|+
T Consensus 163 ~l~~~ 167 (475)
T TIGR00924 163 VIAEN 167 (475)
T ss_pred HHHHh
Confidence 77765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-06 Score=85.22 Aligned_cols=133 Identities=26% Similarity=0.289 Sum_probs=106.5
Q ss_pred eecchh-hhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchH
Q 040453 386 AIDNLG-QIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGL 463 (547)
Q Consensus 386 ~i~n~~-~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l 463 (547)
+..... .+.+++|.+..+.+...++..+.+.++.+..|+++||+++| ..+.+..++.+++.++..+.. ...+
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR------RVLIIGLLLFALGSLLLAFASNFWLL 88 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH------HHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe------eeEeehhhhhhhHHHHhhhhhhHHHH
Confidence 344445 67778899999999999999999999999999999988754 255666666666644443322 2356
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 464 YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 464 ~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
++..++.|++.+.......++++|++..++.++.+++......+|. ++++.+.+.++|...
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~~ 149 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS-ILGPLLGGFLISYFG 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHCH
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhh-hcccchhhhhhhccc
Confidence 6678999999999999999999999999999999999999999988 778888888886544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00045 Score=76.05 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHhhccccccccccHH---HHHHhCCChhhhHHHHHHHHh-hhhhhchhhhhhc----cCCcHHHHHHH-HHHHHHHHHH
Q 040453 47 MAAAGATYMFSLYSGD---IKYALGYDQTTLNLLSFFKDL-GANVGILSGLINE----ITPPWVVLVLG-AVLNFFGYFM 117 (547)
Q Consensus 47 ~l~~Gt~Y~fSiys~~---L~~~~~~sqs~l~~is~~~~v-G~~~gi~~G~l~D----~~Gp~~~l~iG-~vl~~~Gy~l 117 (547)
+...|..+.|++..+. ..+.+|.+..+...+-.+..+ +....++.|.+.| |+|+|.+.+++ .+...+++.+
T Consensus 11 ~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l 90 (477)
T TIGR01301 11 SVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL 90 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 3445666777765554 447899999988887444444 4456899999999 59999988774 6666666665
Q ss_pred HHHHHhcccc--------C-chH---HHHHHHHHHhhcccccccchhhhhhhhcCCCC-C--cchhhhhHhhhhhhHHHH
Q 040453 118 IWLAVTKKIA--------R-PQV---WHMCLYICVGANSQSFANTGSLVTCVKNFPES-R--GVVLGILKGYVGLSGAII 182 (547)
Q Consensus 118 ~~l~~~g~i~--------~-~~~---~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-R--G~v~Gi~~a~~GLSa~I~ 182 (547)
+... ..+. . ... +.......+...+......++-.-....+|++ | +.+.++...+.++|+.+-
T Consensus 91 l~~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 91 IGFA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG 168 (477)
T ss_pred HHhC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1110 0 011 11122222333444444445555567888864 3 678888877878876444
Q ss_pred H
Q 040453 183 T 183 (547)
Q Consensus 183 s 183 (547)
.
T Consensus 169 ~ 169 (477)
T TIGR01301 169 Y 169 (477)
T ss_pred H
Confidence 4
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.9e-06 Score=86.74 Aligned_cols=151 Identities=12% Similarity=0.048 Sum_probs=109.8
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
.++++|++++..++....-..+..-..++.+++|.+..+.+...++..+.+.++++..|+++||++||+ .+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~------~~~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR------SYYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHH
Confidence 467899999877665544445556777888889998889999999999999999999999999998652 33334
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 445 LLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 445 ~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
.++.+++.++....+. ..+++.-++.|++.|..+......+.+.+-.++-++.++....+..+|. .+++.+.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~ 155 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGT-VLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc
Confidence 4444555544443332 3456677899999998888777777777777788888888766666665 455555655544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.3e-06 Score=88.95 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=108.7
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
|..-++.+++.+++.......+-....++.+++|.+..+.+..+++..+...++++..|+++||+++| ..+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~~~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR------YFMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc------hhHHHH
Confidence 33445555555544443333444556788889999888899999999999999999999999988754 244555
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 445 LLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 445 ~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.++..++.++...... ..+++.-++.|++.|..+.....++.|+|..|+.|+-.++...+..+|. .+++.+.+.++|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~l~~~ 173 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG-ALIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 5555666555544332 2344455678999999999999999999998899998888877777766 4556666666553
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=86.88 Aligned_cols=136 Identities=13% Similarity=0.011 Sum_probs=101.6
Q ss_pred hchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc
Q 040453 381 GGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP 460 (547)
Q Consensus 381 g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~ 460 (547)
.+..++...+.+|.++++.+..+....++++.+..+++++.+|+++||++||+ .+....++.+++.++......
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP------VLITGALIFTLACAATLFTTS 103 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH------HHHHHHHHHHHHHHHHHHcCC
Confidence 35567777888899999998888899999999999999999999999988652 333444555555555544433
Q ss_pred -chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 461 -GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 461 -~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
..++++-++.|++.|........++.|.|..++-++..++...+..++. .+++.+.+.+.|.
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~lg~~l~~~ 166 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAP-IIGPLSGAALMHF 166 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 3456677888988877667777889999998888888888777777766 5566666665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=83.42 Aligned_cols=130 Identities=15% Similarity=0.260 Sum_probs=99.4
Q ss_pred eecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHH
Q 040453 386 AIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLY 464 (547)
Q Consensus 386 ~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~ 464 (547)
+.....++.++.|.+..+.+...++..+...++.+..|+++||++||+ .+.+..++.+++.++...... ..++
T Consensus 31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (405)
T TIGR00891 31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL------PMVTSIVLFSAGTLACGFAPGYITMF 104 (405)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334445666788999889999999999999999999999999988652 334445555555555444332 3456
Q ss_pred HHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 465 VASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 465 ~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
+.-++.|++.|..+....+++.|.+..++-++..++...+..+|. ++++.+.+.+.+
T Consensus 105 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~ 161 (405)
T TIGR00891 105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA-VVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 678999999999999999999999999999999998887777776 455656555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=85.74 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
+-+|..++.+++..+.-.+.-....++.++++.+..+.+...++..+...++++..|+++||+++|+ .+....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~------~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR------QLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHH
Confidence 5677777776666555445555677888899999888999999999999999999999999998652 3444455
Q ss_pred HHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 447 LSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 447 ~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
+.+++.++....+. ..+++...+.|++.|..+....+++.|.|..|+-++..++......+++ .+.+.+.+.+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~ 155 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAG-MIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 55566555554332 3455567899999999999999999999987788877766655555554 33444444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=83.75 Aligned_cols=130 Identities=8% Similarity=-0.032 Sum_probs=74.0
Q ss_pred cccccccccHH-HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 040453 52 ATYMFSLYSGD-IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARP 129 (547)
Q Consensus 52 t~Y~fSiys~~-L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~ 129 (547)
..+.|..+.|. +++++|+++.+...+.....+... ..++.|++.||+++|..+.++.+...+.+..+. .. .
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~---~-- 303 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML--MA---H-- 303 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--HH---h--
Confidence 34445555554 667899999887775333333333 368999999999999888777666554433221 11 1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHH
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRA 188 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~ 188 (547)
+.+.+.....+.+.+.+...........+.+|++||++.++......++..+-..+...
T Consensus 304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~ 362 (393)
T PRK15011 304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGI 362 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222222333457789999999998766666655555444433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=83.20 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhchheeecchhh-hhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 368 DMLILFFATICGVGGTLTAIDNLGQ-IGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 368 ~Fwll~~~~~~~~g~Gl~~i~n~~~-I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
.||..++.+++......++..-..+ +.+++|.++.+.+...++..+...++.+.+|+++||+++| ..+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR------YTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 5888888888776666666666664 7778999999999999999999999999999999988754 24455566
Q ss_pred HHHHHHHHHHhhc-c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc
Q 040453 447 LSCIGHLLIAFNV-P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502 (547)
Q Consensus 447 ~~~i~~lll~~~~-~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~ 502 (547)
+..++.++..... . ..+++..++.|++.+ .+....++++|++..|+-++..++..
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~ 132 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAA 132 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence 6666666555443 2 345567788898844 56667888999999888888877765
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-05 Score=80.98 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=78.5
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHhccccCc
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLV-LGAVLNFFGYFMIWLAVTKKIARP 129 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~-iG~vl~~~Gy~l~~l~~~g~i~~~ 129 (547)
..|.+..|.|...+++|++..+...+.....++.. ..+..|++.||+++|.... .+.+...+....+++... .. ..
T Consensus 237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~-~~ 314 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ-HF-GH 314 (402)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-cc-CC
Confidence 45777778888878899998887665433344444 4688999999999877653 333333333222222111 11 12
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
+.+.+..+.++.|.+.+.. ........+.+|++||++.|+.-....+++.+-..+...+.+
T Consensus 315 ~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 315 SFAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333333333333332222 222223345679999999999887777777665555555544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=86.04 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=84.8
Q ss_pred hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHH-----hhc-cchH
Q 040453 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIA-----FNV-PGGL 463 (547)
Q Consensus 390 ~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~-----~~~-~~~l 463 (547)
..+|.++++.++.+.+...+.+.+...++.+..|+++||+++|+ ++.+..++..++.++.. ... ...+
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 125 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ------FLPFLLILSAICMLGFGASLGSGSVSLGLM 125 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc------hHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 45677789998888999999999999999999999999887653 22222222222222221 112 1345
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 464 YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 464 ~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
++.-.+.|++.|..+.....+++|+|..++.|+..|+...+..+|.
T Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~ 171 (467)
T PRK09556 126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG 171 (467)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh
Confidence 5566789999999999999999999999999999998877666665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0003 Score=76.89 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=64.4
Q ss_pred HHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhcc----CCcH-HHHHHHHHHHHHHHHHHHHHHhccccCc-hHHHHHH
Q 040453 64 KYALGYDQTTLNLL-SFFKDLGANVGILSGLINEI----TPPW-VVLVLGAVLNFFGYFMIWLAVTKKIARP-QVWHMCL 136 (547)
Q Consensus 64 ~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~----~Gp~-~~l~iG~vl~~~Gy~l~~l~~~g~i~~~-~~~~l~~ 136 (547)
.+.+|++...+.++ .+....-+..-++-|.+.|| +|+| +-+++|++...+.+.++|..- +.-... ..|.+..
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y~~~~ 115 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIYAAIT 115 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHHHHHH
Confidence 36789998888885 44444444557899999997 4664 556678888888887776432 110111 1333333
Q ss_pred HHH----HhhcccccccchhhhhhhhcCCCCCcchhhhhHhhh
Q 040453 137 YIC----VGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYV 175 (547)
Q Consensus 137 ~~~----lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~ 175 (547)
|.+ ...... -| .++...+..=|++|..+++.-..+.
T Consensus 116 ~~~~~~~~t~~~i--py-~al~~~lt~d~~eRt~l~s~r~~~~ 155 (460)
T PRK11462 116 YTLLTLLYTVVNI--PY-CALGGVITNDPTQRISLQSWRFVLA 155 (460)
T ss_pred HHHHHHHHHHHhc--cH-HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 322 222222 22 3555655555889999988765443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=82.11 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred ccccHHHH-HHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Q 040453 57 SLYSGDIK-YALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHM 134 (547)
Q Consensus 57 Siys~~L~-~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l 134 (547)
..+-|.+. +.+|++..+...+.....++.. .+++.|++.||.+++..+.++.++.++++.++.. . ++.+.+
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~--~~~~~~ 315 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----M--PMWILA 315 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----c--chHHHH
Confidence 33445544 4489998887776554556654 3678999999988887887888887777665432 1 233433
Q ss_pred HHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHHh
Q 040453 135 CLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGD-DTKSLILFIGWLPAAISFAF 212 (547)
Q Consensus 135 ~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~-~~~~fllfla~~p~~v~li~ 212 (547)
+...++.|.+.+...........+.+|+ +||.+.|+.....-++..+=..+...+.+. +....++..+....+++++.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 3344444455554444444556788886 599999997665555554444444444332 33444555555555555554
Q ss_pred hhee
Q 040453 213 LRTI 216 (547)
Q Consensus 213 ~~~i 216 (547)
...+
T Consensus 396 ~~~~ 399 (417)
T PRK10489 396 LLVL 399 (417)
T ss_pred HHhc
Confidence 4433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=87.18 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=107.6
Q ss_pred HHhhccH-HHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhh-hhhhcCCCh
Q 040453 361 LQALFSL-DMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI-FLAKYKFPR 437 (547)
Q Consensus 361 ~q~l~t~-~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~-l~~r~~~~r 437 (547)
.+.+|.+ .+|.++...++...+--.+...+.... +++|.++.++...++.+........+.+|+++|| +++|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----- 88 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----- 88 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence 4455666 499999887776555444445555555 5689888777777777666666666789999998 4654
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCc--hhhhcchhccchhhHHHHHH
Q 040453 438 PLMLTIILLLSCIGHLLIAFNVP--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKY--YSTLYNFGGAASPLGSYLLN 513 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~~~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~--~g~nyg~~~~~~~~gs~~l~ 513 (547)
..+.+..++.+++.+++..... ..++++-++.|++.|......+++++|.|..++ ....+++.+.+..+|+ .++
T Consensus 89 -~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~-~~g 166 (500)
T PRK09584 89 -RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS-FFS 166 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH-HHH
Confidence 2445555666666666554322 234556688999999999999999999996433 3446776666777776 567
Q ss_pred HHHHHHHhHHH
Q 040453 514 VRVAGHLYDKE 524 (547)
Q Consensus 514 ~~l~G~~yd~~ 524 (547)
+.+.|.+.|..
T Consensus 167 p~i~g~l~~~~ 177 (500)
T PRK09584 167 MLATPWLAAKY 177 (500)
T ss_pred HHHHHHHHHhh
Confidence 77788777653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=83.46 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHH
Q 040453 369 MLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLS 448 (547)
Q Consensus 369 Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~ 448 (547)
.|++.+...++.....++.....++.++++.++.+.+...++..+...++.+.+|+++||++||+ .+.+..++.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~------~~~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP------VILVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHHHHHH
Confidence 34444445555545456666788889999999999999999999999999999999999887642 333344445
Q ss_pred HHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 449 CIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 449 ~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
+++.++...... ..+++..++.|++.|........++.|.+..++.++..++..++..++. .+++.+.+.+.|.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~ 158 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP-LLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 555544444332 3456677889999988888888889999988888888888777777766 5667677776654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.5e-05 Score=80.73 Aligned_cols=153 Identities=16% Similarity=0.088 Sum_probs=103.9
Q ss_pred HHHhhhcc--HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHH
Q 040453 29 AIQVITGR--WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLV 105 (547)
Q Consensus 29 ~~~~~~~R--w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~ 105 (547)
.++..++| |..+++..+.+.+....|. |.++.-+++|++..+...+.....+... .+++.|++.||+|+|..+.
T Consensus 198 ~~~~l~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~ 274 (382)
T TIGR00902 198 FIALLKNPMNLRFLAAVCLIQGAHAAYYG---FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLL 274 (382)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHH
Confidence 34454555 5555555555555444444 4555556699999988876444444444 4788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhH-hhhhhhHHHHH
Q 040453 106 LGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILK-GYVGLSGAIIT 183 (547)
Q Consensus 106 iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~-a~~GLSa~I~s 183 (547)
+|.++..+++.++.. . ++.|.+.....+-+.+-+....+++.-..++ |+ +|++..++.. ...|+|..+-+
T Consensus 275 ~~~~~~~~~~~~~~~-----~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~ 346 (382)
T TIGR00902 275 ISAIACVGRWAIIGA-----I--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFT 346 (382)
T ss_pred HHHHHHHHHHHHHHh-----H--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876522 1 3445555556666666667766766666666 64 7899999864 46788887777
Q ss_pred HHHHHHhCC
Q 040453 184 QLYRAFYGD 192 (547)
Q Consensus 184 ~i~~~~f~~ 192 (547)
.+.-.+.+.
T Consensus 347 ~~~G~l~~~ 355 (382)
T TIGR00902 347 AFAGFIYPT 355 (382)
T ss_pred HHHHHHHHh
Confidence 666666554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=79.01 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhh-hhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQI-GGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~ 443 (547)
.|.||++++++++---+-.-.+. ++|+ .++ .|+++.+++..-|.+-.-++.--...|.++|+.+++ .|+...
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~-lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~ 336 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFIT-LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVAS 336 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHH
Confidence 57899999887764333222332 3333 344 688888888777777777788888999999999865 344555
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHhhhcc----chhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 444 ILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGA----QWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 444 ~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~----~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
..+....+|-.+.+.. ..-|++..+.|++|-. .|...|.++.| +..|+-||++..-.-+|- .+.+.++|.
T Consensus 337 a~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAcslWP~va~~vpE----~qLGTaygf~qsIqNLgl-a~i~Iiag~ 410 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLACSLWPCVASLVPE----EQLGTAYGFIQSIQNLGL-AFIPIIAGF 410 (459)
T ss_pred HHHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH----HHhcchHHHHHHHHhhhh-hHHhhhhhe
Confidence 6677777887666543 3467788999999875 45567777775 456666666644443432 445667888
Q ss_pred HhHHHHh
Q 040453 520 LYDKEAK 526 (547)
Q Consensus 520 ~yd~~~~ 526 (547)
+-|....
T Consensus 411 i~d~~g~ 417 (459)
T KOG4686|consen 411 IADGDGS 417 (459)
T ss_pred eecCCCc
Confidence 8877653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00022 Score=76.10 Aligned_cols=127 Identities=16% Similarity=0.266 Sum_probs=97.8
Q ss_pred hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 040453 396 SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFG 475 (547)
Q Consensus 396 a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G 475 (547)
++|.+..+....-...++...+|-++.|+|.||++.| +.++....+...+...++....+..+++...++|++.|
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 5788777777777888888999999999999988754 22333333333333333322234567778999999999
Q ss_pred cchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhhc
Q 040453 476 AQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 476 ~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~~ 528 (547)
+..+...+..++..-.+.-++-||+-.+..=.++ .++|++.+-+-|.-.+.+
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S-~~gp~lv~v~t~iTg~~r 408 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS-FLGPFLVAVITQITGSSR 408 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHH-HHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999988887777 678999998888776643
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00033 Score=73.64 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHH
Q 040453 39 MVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFM 117 (547)
Q Consensus 39 ~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l 117 (547)
..++++--+.-++-.-.=|..+|.+.+..|.+..|.++++...+.|..+ ...+|++.|++|+|.-..+-.+..+.-
T Consensus 80 ~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~--- 156 (528)
T KOG0253|consen 80 FFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF--- 156 (528)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH---
Confidence 4555555555555556668899999999999999999999999999876 689999999999998765544443221
Q ss_pred HHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcC-CC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCch
Q 040453 118 IWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNF-PE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTK 195 (547)
Q Consensus 118 ~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nF-P~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~ 195 (547)
. ..++.- +.+..+|++-++-+.|.+- + ....+--.-| |. +|++-+=.. ++...+..+-..+.-..-++-.=
T Consensus 157 -~-~is~~s--pnf~~L~~f~~l~~~g~gg-~-pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 157 -G-VISGAS--PNFASLCVFRALWGFGVGG-L-PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred -H-HhhcCC--CCeehhhHHHHHHhccCCC-c-cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 1 124443 4455577766666666554 2 2333333334 65 677655444 77666654444443333333334
Q ss_pred HHHHHHHHHHHHHHHH
Q 040453 196 SLILFIGWLPAAISFA 211 (547)
Q Consensus 196 ~fllfla~~p~~v~li 211 (547)
++++|+.-+|......
T Consensus 230 r~~l~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 230 RYLLFTSSTPLMFAAR 245 (528)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 6777777777665444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=84.27 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=97.6
Q ss_pred hhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHH
Q 040453 392 QIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIII 470 (547)
Q Consensus 392 ~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~li 470 (547)
.|.++++.+..+.+...+++.++.+++.+..|+++||+++| ..+.+..++..++.++..... ...+++.-++.
T Consensus 33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 106 (412)
T TIGR02332 33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR------RWIAGIMVLWGIASTATMFATGPESLYLLRILV 106 (412)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH------HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34567898888999999999999999999999999998865 244555556666666555443 34566777899
Q ss_pred HhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 471 GFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 471 G~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
|++.|+.+.....+++|+|..|+-|+..++...+..+|. ++++.+.+.+.+
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~l~~ 157 (412)
T TIGR02332 107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM-ALGLILSGYILA 157 (412)
T ss_pred HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 999999998888999999998899999999888877776 556666666653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.8e-05 Score=80.85 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=95.8
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccC---
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIAR--- 128 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~--- 128 (547)
.+....|.+.+.+++|++..+.........++. ...+++|++.||+++|..+.++.++..++..++..........
T Consensus 300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 445667788888899999866655544444443 3478899999999999999999888777766654221111110
Q ss_pred --chHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCC-CchHHHHHHHHH
Q 040453 129 --PQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGD-DTKSLILFIGWL 204 (547)
Q Consensus 129 --~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~-~~~~fllfla~~ 204 (547)
...+........++.+.++. ......+.+.+|. +||++.|+......+++++...+...+.+. +....+.+++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~ 458 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWG-PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458 (481)
T ss_pred chhHHHHHHHHHHHHHHHcccc-CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence 11121112222222232221 1222334677885 799999999888889988888777766553 333334445544
Q ss_pred HHHHHHH
Q 040453 205 PAAISFA 211 (547)
Q Consensus 205 p~~v~li 211 (547)
..+..++
T Consensus 459 ~~~~~i~ 465 (481)
T TIGR00879 459 NVLGLIF 465 (481)
T ss_pred HHHHHHH
Confidence 4444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=82.64 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVAS 467 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~ 467 (547)
-.+++.++++.++.+.+..+++..+...++.+.+|.+.||++|| ..+....++.+++.++....+. ..+++.-
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 104 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR------KLLIGLFVLFIASHVLSALAWNFTVLLISR 104 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 36788889999999999999999999999999999999988765 3445555666666655554433 3455667
Q ss_pred HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 468 IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 468 ~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.|++.+..+....+++.|++..++-++..|+...+..+|. .+++.+.+.+.+.
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~-~ig~~l~~~l~~~ 159 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM-VLGLPLGRVIGQY 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 889999999999999999999998999999999988888887 6677777777664
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=83.44 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhh-hhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQ-IGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~-I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~ 443 (547)
.+.++|.+++..++..-+.-+...-++. +.+++|.++.+.+..+++..+...++++.+|+++||++|| | .+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r----~--~l~~ 86 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK----R--SALQ 86 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch----H--HHHH
Confidence 5677888777655543332233333333 4567899999999999999999999999999999999865 2 2222
Q ss_pred HHHHHHHHHH---HHHhh------ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHH
Q 040453 444 ILLLSCIGHL---LIAFN------VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNV 514 (547)
Q Consensus 444 ~~~~~~i~~l---ll~~~------~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~ 514 (547)
..+..+++.+ +.... ....+++.-++.|++.+.......+.+.|.+..|+.++-.++..++..+|. .+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~-~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGAL-AAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHH-HHHH
Confidence 2222222221 11111 112355677899999998888888889999999999999988776665554 4566
Q ss_pred HHHHHHhH
Q 040453 515 RVAGHLYD 522 (547)
Q Consensus 515 ~l~G~~yd 522 (547)
.+.+.+++
T Consensus 166 ~~~~~l~~ 173 (392)
T PRK12382 166 PLGLLLHS 173 (392)
T ss_pred HHHHHHHh
Confidence 66666554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00012 Score=77.75 Aligned_cols=172 Identities=14% Similarity=0.018 Sum_probs=97.8
Q ss_pred HHHhhhccHHHHHHHHHHHHhhccccccccccHHH-HHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHH
Q 040453 29 AIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDI-KYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVL 106 (547)
Q Consensus 29 ~~~~~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L-~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~i 106 (547)
.+...++|.+.+... ...+.....+.|..+.|.+ ++.+|++..+.........++..+ .++.|++.||+++|..+.+
T Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 208 YKLVLKNRRFVAGAL-ALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344555654332221 1222233345666666664 677899988876654333344433 6789999999999999989
Q ss_pred HHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHH
Q 040453 107 GAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLY 186 (547)
Q Consensus 107 G~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~ 186 (547)
|.++..+|..++....... ..+.+.+....++.+.|.+..++.........-|++||.+.++......++..+=..+.
T Consensus 287 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 287 GLWPMVAGLLLAALATVIS--SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877664432111 12233333334444445544433332223334578999999997666656665555555
Q ss_pred HHHhCCCchHHHHHHHH
Q 040453 187 RAFYGDDTKSLILFIGW 203 (547)
Q Consensus 187 ~~~f~~~~~~fllfla~ 203 (547)
..++.......+.++++
T Consensus 365 ~~l~~~~~~~~~~~~~~ 381 (406)
T PRK15402 365 KHAYLGGGNGLFNLFNL 381 (406)
T ss_pred HhcccCCchHHHHHHHH
Confidence 55555433333333333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=86.33 Aligned_cols=149 Identities=14% Similarity=0.227 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
+.++.+++..++..-...++.....++.++++.+..+.+..+++..+...++.+..|+++||++|| ..+....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR------LAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHH
Confidence 466666666655444444444456777788999888889999999999999999999999998764 23444555
Q ss_pred HHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 447 LSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 447 ~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
+.+++.++...... ..+++..++.|++.|..+.....++.|+|-.|+-++-.++...+..+|. .+++.+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~ 169 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA-VVAAQVYSLVVP 169 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 55555555444332 3466678899999999999999999999998888888888777777776 556666665544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=82.92 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=105.9
Q ss_pred heeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-ch
Q 040453 384 LTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GG 462 (547)
Q Consensus 384 l~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~ 462 (547)
-++.....++.++++.++.+.+...++..+...++++..|+++||++|| ..+....++.+++.++...... ..
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK------PVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh------HHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3566778888999999888999999999999999999999999988643 2444455555556555544332 34
Q ss_pred HHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 463 LYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 463 l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
+++...+.|++.+.......+++.|.+..++.++..++......+|. .+++.+.+.+.|..
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~ 142 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP-LLAPIIGGWLLVWF 142 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 56677899999999999999999999999999999999888777776 66777777777653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-05 Score=82.36 Aligned_cols=137 Identities=16% Similarity=0.069 Sum_probs=76.1
Q ss_pred hhccccccccccHHH-HHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHH-HHHHHHHHHhcc
Q 040453 49 AAGATYMFSLYSGDI-KYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFF-GYFMIWLAVTKK 125 (547)
Q Consensus 49 ~~Gt~Y~fSiys~~L-~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~-Gy~l~~l~~~g~ 125 (547)
.....|.+..|.|.. ++.+|++..+...+.....++..+ .+..|.+.||+|+|.++.++.+...+ ++.++....+
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS-- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 334567788888885 467899887766555555666654 56789999999999998888765433 3322222211
Q ss_pred ccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 126 IARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 126 i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.+.+.+....++.+.+.+...........+.||. .||++.|+.-...-+.+.+...+...+.
T Consensus 340 ---~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~ 402 (490)
T PRK10642 340 ---NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV 402 (490)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222221111111222233467986 5999998754443344444444444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.7e-06 Score=83.64 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVAS 467 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~ 467 (547)
...++.+++|.++.+.+...++..+.+.++++..|+++||++||+ .+....++..++.++..... ...+++.-
T Consensus 16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (399)
T TIGR00893 16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK------TLAVFIVIWGVFTGLQAFAGAYVSLYILR 89 (399)
T ss_pred hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce------eeHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345566778998888999999999999999999999999988653 22333444444444444333 24556677
Q ss_pred HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 468 IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 468 ~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.|++.|..+...+.+++|++..|+-++..++......+|. ++++.+.+.+.+.
T Consensus 90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~ 144 (399)
T TIGR00893 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG-IIGGPLVGWILIH 144 (399)
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHh
Confidence 999999999999999999999998999999998877777776 5566667766554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=83.20 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHH-H
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT-I 443 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~-~ 443 (547)
+|+||.+....++...+--.+........+ ++|.++.+.+..+++..+...++++.+|+++||++||+ ..... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~----~~~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK----HLLWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHH
Confidence 589999976655554443344445555444 57998889999999999999999999999999998763 22111 1
Q ss_pred HHHHHHHHHHHHHhhc------cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHH
Q 040453 444 ILLLSCIGHLLIAFNV------PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVA 517 (547)
Q Consensus 444 ~~~~~~i~~lll~~~~------~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~ 517 (547)
...+......++.... ...+.+..++.|++++.........+.|. .|+.+.+||.......+|. .+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~-~~g~~~~ 153 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGW-ALCASIA 153 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHH-HHHHHHH
Confidence 1111111111111111 01123445778888888888888777764 2444455555433333433 3344444
Q ss_pred HHHh
Q 040453 518 GHLY 521 (547)
Q Consensus 518 G~~y 521 (547)
|.++
T Consensus 154 g~l~ 157 (396)
T TIGR00882 154 GILF 157 (396)
T ss_pred hhhh
Confidence 4443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=80.76 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=97.4
Q ss_pred cchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHH
Q 040453 388 DNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVA 466 (547)
Q Consensus 388 ~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~ 466 (547)
.....+.+++|.+..+.+...++..+...++.+..|+++||++|| ..+....++..++.++...... ..+++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK------RVLLWSILLFSVFTLLCALATNVTQLLIL 111 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 345566778898888888889999999999999999999998754 2334444455555544443332 345567
Q ss_pred HHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 467 SIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 467 ~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.++.|++.|.......++++|++..++-++..++...+..+|. .+++.+.+.+.|.
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~ 167 (398)
T TIGR00895 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA-AVGGFLAGWLIPV 167 (398)
T ss_pred HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHH-HHHHHHHHHHhhc
Confidence 7899999999999999999999998889998888877777776 5566666666553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-05 Score=82.72 Aligned_cols=175 Identities=14% Similarity=0.096 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHhCCChh--------hhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHH
Q 040453 37 WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQT--------TLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLG 107 (547)
Q Consensus 37 w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs--------~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG 107 (547)
|..++..++++......| .|.+...++.+++++ +...+.....+.. ...++.|++.||+|+|.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred eeHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344555555444443333 444554456666642 2333322222333 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhH-hhhhhhHHHHHHH
Q 040453 108 AVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILK-GYVGLSGAIITQL 185 (547)
Q Consensus 108 ~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~-a~~GLSa~I~s~i 185 (547)
.++..+++.++... .... ...+.+.+..++.+.+.+..+.+...-..+++|+ +||++.|+.. ...++++++-..+
T Consensus 288 ~~~~~v~~~l~~~~-~~~~--~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 288 LVAWALRFGFFAYG-DPEY--FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHHHc-Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99988886554321 1111 1233344444555555555555556667889985 6999999985 5667777665555
Q ss_pred HHHHhCC---C----chHHHHHHHHHHHHHHHHhhheee
Q 040453 186 YRAFYGD---D----TKSLILFIGWLPAAISFAFLRTIR 217 (547)
Q Consensus 186 ~~~~f~~---~----~~~fllfla~~p~~v~li~~~~ir 217 (547)
...+++. + -+.-+++.++...+.+++..++++
T Consensus 365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5444432 1 122344555555555666666665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=82.98 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=95.1
Q ss_pred ecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHH
Q 040453 387 IDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYV 465 (547)
Q Consensus 387 i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~ 465 (547)
......|.++.|.++.+.+...++..+...++.+.+|+++||++|| ..+.+..++.+++.++...... ..+++
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK------PLMMWSIVAYSVGTGLSGLASGVIMLTL 111 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344556678999888889999999999999999999999988754 3455555666666655444332 35666
Q ss_pred HHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHH
Q 040453 466 ASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 466 ~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
.-.+.|++.|..+.....++.|.|..|+-++..++...+..+|. ++++.+.+
T Consensus 112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~-~~~~~l~~ 163 (426)
T PRK12307 112 SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN-IIAAYFMP 163 (426)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH-HHHHHHHH
Confidence 78899999999999999999999998888998888777766665 34444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.5e-05 Score=79.67 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=67.2
Q ss_pred cccccccccHH-HHHHhCCChhhhHHHH-HHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 040453 52 ATYMFSLYSGD-IKYALGYDQTTLNLLS-FFKDLGANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARP 129 (547)
Q Consensus 52 t~Y~fSiys~~-L~~~~~~sqs~l~~is-~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~ 129 (547)
..|.+..|-|+ +++++|+++++...+. +...++...+++.|.+.||+++|.++.+++++..+....+..... ..+ .
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 335 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVS-S 335 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCC-c
Confidence 45667777776 5567899988876643 333334445788899999999998887776654333222221111 111 1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhh
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGY 174 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~ 174 (547)
+.+.+. +..++....++..........+.||. +||++.|+.-+.
T Consensus 336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 336 PYAAFG-LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 222121 11212111112111222335689986 699999997543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.3e-05 Score=81.90 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=100.1
Q ss_pred hhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q 040453 379 GVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFN 458 (547)
Q Consensus 379 ~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~ 458 (547)
+..+--++.....++.++++.++.+.+...++..+...++.+.+|+++||++||+ .+....++..++.++....
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP------VLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH------HHHHHHHHHHHHHHHHHHh
Confidence 3344445666777888899999899999999999999999999999999987652 3334444555555544443
Q ss_pred cc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 459 VP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 459 ~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.. ..+++.-.+.|++.+........++.|.|..++.++.++.......++. .+++.+.|.+.|+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~ 156 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSP-ALAPLLGAWLLNH 156 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 32 3455566888998888888888999999998888877777665555555 4556666666654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=75.09 Aligned_cols=127 Identities=8% Similarity=-0.071 Sum_probs=79.8
Q ss_pred ccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHH
Q 040453 59 YSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLY 137 (547)
Q Consensus 59 ys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~ 137 (547)
+-++..+++|++..+...+.....++.. ..++.|++.||+++|..+.++.++..+++.++... +....+.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 301 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----PMLNDVLFLAT 301 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----ccchhHHHHHH
Confidence 3344556788888777776555455554 36889999999999999989988888887665322 11112222111
Q ss_pred HHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 138 ICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 138 ~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
.++.+.+.+..++.......+.+|+ +||++.|+......+++.+-..+...+.
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333333333345677865 6999999998888888776665555444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=76.81 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHhhhcc--HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHH
Q 040453 29 AIQVITGR--WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLV 105 (547)
Q Consensus 29 ~~~~~~~R--w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~ 105 (547)
.++..++| |..++...+.+++.+..|. |.++.-++.|+++.+...+.....++.. ..++.|++.||+++|..+.
T Consensus 198 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~ 274 (382)
T PRK11128 198 WKALLKEPTVWRFLLCVSLLQGSHAAYYG---FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLL 274 (382)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhHhHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 45555555 4455555666655544443 3345546689998888776444445544 4689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhH-hhhhhhHHHHH
Q 040453 106 LGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILK-GYVGLSGAIIT 183 (547)
Q Consensus 106 iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~-a~~GLSa~I~s 183 (547)
++.+...+++.++.. . .+.|.+....++.|.+.+..+.+.+....+.-|+++|.+.++.. ...+++..+-.
T Consensus 275 ~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~ 346 (382)
T PRK11128 275 LSAICGVVRWGLMGS-----T--TALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMT 346 (382)
T ss_pred HHHHHHHHHHHHHHh-----h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888765422 1 23444444555556666666666666666666778898888764 32344433333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.9e-05 Score=84.09 Aligned_cols=132 Identities=16% Similarity=0.247 Sum_probs=102.9
Q ss_pred eeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chH
Q 040453 385 TAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGL 463 (547)
Q Consensus 385 ~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l 463 (547)
++.....++.+++|.+..+.+...+...+.+.++.+..|+++||++|| ..+.+..++..++.++...... ..+
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR------RLFLISTFAFTLGSLLCGVAPNLELM 93 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH------HHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence 344456778888999888889999999999999999999999998754 2444555566666655554432 345
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 464 YVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 464 ~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.+.-++.|++.|.......+++.|.+..++-++..++......+|. .+++.+.|.+.|+
T Consensus 94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~ 152 (485)
T TIGR00711 94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP-ALGPTLGGWIIEN 152 (485)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh-hhhhccHhHhccC
Confidence 6677899999999999999999999998999999998877777776 5566777776653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0013 Score=70.92 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=91.7
Q ss_pred HHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhhcCCCCcc----hhhHHHHHHHHHhhhhhhcchhhhhhhhhcC
Q 040453 360 ILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGSLGYPKKS----ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK 434 (547)
Q Consensus 360 ~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~g~~~~~----a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~ 434 (547)
..+.+|+++||.+-+ +.+++.+--.+..+.-++ .++.--++++ .+...++--+..+..=.++.++-+|++.|
T Consensus 213 ~~~l~k~~~fw~~~l-~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-- 289 (412)
T PF01306_consen 213 VLSLFKMRNFWFFVL-FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-- 289 (412)
T ss_dssp HHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence 457789999998544 444443332333222222 2233222222 23333444444455444555555554422
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHH
Q 040453 435 FPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLL 512 (547)
Q Consensus 435 ~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l 512 (547)
..+.+..+++++=.+.....+. ..+.+.=.|=|+.++...--.==.+++.|..|-.++.|.+. .++..+|..++
T Consensus 290 ----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 290 ----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2444555555555555444443 33444557778888776666666778899988888999885 68888888776
Q ss_pred HHHHHHHHhHHHHhh
Q 040453 513 NVRVAGHLYDKEAKR 527 (547)
Q Consensus 513 ~~~l~G~~yd~~~~~ 527 (547)
+ .++|.+||+-.-+
T Consensus 366 s-~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 366 S-PLAGYLYDRIGFQ 379 (412)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred h-hhHHhhHhhcCcH
Confidence 6 5899999998644
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=75.33 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=74.0
Q ss_pred HHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHH
Q 040453 62 DIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICV 140 (547)
Q Consensus 62 ~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~l 140 (547)
-+++++|.+..+...+........ ...++.|++.||+|+|.++.++.++..+.+..+... .+.|.+.....+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 297 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------NSLWALLMLQLL 297 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 356788999888776533222222 235789999999999998888777666665443221 123433333334
Q ss_pred hhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHH
Q 040453 141 GANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRA 188 (547)
Q Consensus 141 gg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~ 188 (547)
.+.+.+...........+.+|++||.+.|+......++..+-..+...
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 345 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGI 345 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455667889999999998766655655544444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=77.81 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcch-----hhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSI-----STFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a-----~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~ 440 (547)
+++++.+|+..++..-+..++..-+..+.+++|.+..+. +...++..+...++.+.+|+++||++|| ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK------IM 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH------HH
Confidence 457778877766654444455666788888888876543 5677888899999999999999988754 23
Q ss_pred HHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 441 LTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 441 l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
+....++.+++.+++.... ...+++..++.|++.+ .......++.|.+..++.++..++...+..+|. ++++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 164 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGA-LLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344455555555444333 2345566778888754 556677788899988888888888877777776 566777777
Q ss_pred HhHHH
Q 040453 520 LYDKE 524 (547)
Q Consensus 520 ~yd~~ 524 (547)
+.|..
T Consensus 165 l~~~~ 169 (408)
T PRK09874 165 LADSY 169 (408)
T ss_pred HHHHh
Confidence 76643
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-05 Score=78.40 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=88.1
Q ss_pred cccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
..|.+..|.|.+.+++|++..+...+.....++.. ..++.|.+.||+|+|..+.++.+...+++.++.. . .+
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~--~~ 307 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----A--PS 307 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----c--Cc
Confidence 34555666778777889998888886555555554 4789999999999999887766665565543321 1 12
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
.+.+.+..++.+.+.+..++.......+.+|+ +||++.|+......+++++-..+...+.+
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 33333333333333333344555556778875 69999999988888888776666666655
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.8e-05 Score=80.83 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=99.0
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~ 443 (547)
-++.+|+-++.+..+-..=.+.-.-..++-+ +++.++.+.+..+++..+...++|+..|.+.||++.| . ++.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~-v~~~ 105 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----R-WTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----H-HHHH
Confidence 3468888888766654433333333444444 6899999999999999999999999999999998844 2 3334
Q ss_pred HHHHHHHHHHHHHhh------ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh----ccchhhHH
Q 040453 444 ILLLSCIGHLLIAFN------VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG----GAASPLGS 509 (547)
Q Consensus 444 ~~~~~~i~~lll~~~------~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~----~~~~~~gs 509 (547)
..++..+..++.... ....+++..++.|++ |+.+......++++|-.|+.|+..|+. .++..+++
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 444445555554432 223566778999998 889999999999999888899998887 44454444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00019 Score=77.82 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=84.2
Q ss_pred cccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH-
Q 040453 56 FSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWH- 133 (547)
Q Consensus 56 fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~- 133 (547)
...|.|.+.++.|+++.+.........+.. ...+++|++.||+|+|..+++|.++..++++++........ ...+.
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~--~~~~~~ 367 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVAL 367 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc--ccHHHH
Confidence 345678888889998765444333222222 34789999999999999999999999999887765433222 22222
Q ss_pred HHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHh
Q 040453 134 MCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFY 190 (547)
Q Consensus 134 l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f 190 (547)
++......+.+..+ .+.......+.||. +||.+.|+..+...+++.+.+.++....
T Consensus 368 ~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 368 LSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHhccc-cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 12222112222222 12334556778985 7999999998887888877776665443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-05 Score=79.20 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=102.3
Q ss_pred HHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHH
Q 040453 375 ATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLL 454 (547)
Q Consensus 375 ~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ll 454 (547)
..+++....-++..-..++.++++.++.+.+...++..+...++.+..|+++||++|| ..+....++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK------PVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh------HHHHHHHHHHHHHHHH
Confidence 3344433334555678888999999888888999999999999999999999998754 2344444555555555
Q ss_pred HHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 455 IAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 455 l~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
...... ..+++.-++.|++.|..+....+++.|.+..++-++..++......++. ++++.+.+.+.|
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~-~~~~~i~~~l~~ 152 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP-VLAPVLGHLIML 152 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 444332 3455567889999999999999999999999998888887766555555 445555555544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=75.01 Aligned_cols=158 Identities=11% Similarity=0.092 Sum_probs=94.4
Q ss_pred HHhhhcc--HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHH-HHHhhhhh-hchhhhhhccCCcHHHHH
Q 040453 30 IQVITGR--WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSF-FKDLGANV-GILSGLINEITPPWVVLV 105 (547)
Q Consensus 30 ~~~~~~R--w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~-~~~vG~~~-gi~~G~l~D~~Gp~~~l~ 105 (547)
++..++| |..++...+.+......|.|. ++.++| .|++.+++..+.. ...+...+ .+++|++.||+|+|..+.
T Consensus 202 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~ 278 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLSAMTAVSGFGLS--KLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI 278 (390)
T ss_pred HHHHcCcCHHHHHHHHHHHHHHHHHHHHHh--hHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455544 556666666666677777653 455655 7999999888633 33334444 578999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC--CCCcchhhhhHhhhhhhHHHHH
Q 040453 106 LGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP--ESRGVVLGILKGYVGLSGAIIT 183 (547)
Q Consensus 106 iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP--~~RG~v~Gi~~a~~GLSa~I~s 183 (547)
++.++...... .++........++.+.+.....+.+...+....+.....++..+ ++||+..++..+..+++..+-.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~ 357 (390)
T TIGR02718 279 LGVGLAGSLAL-LWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIAS 357 (390)
T ss_pred HHHHHHHHHHH-HHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHH
Confidence 87776534432 33332222111222222223333333333333344444456664 5689999999888888887766
Q ss_pred HHHHHHhC
Q 040453 184 QLYRAFYG 191 (547)
Q Consensus 184 ~i~~~~f~ 191 (547)
.+...+.+
T Consensus 358 ~~~G~l~~ 365 (390)
T TIGR02718 358 SIAGYLTD 365 (390)
T ss_pred HHHHHHHH
Confidence 65555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.6e-05 Score=79.46 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=97.9
Q ss_pred HHHHHHHHH-HHHhhhchheeecchhh-hhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 367 LDMLILFFA-TICGVGGTLTAIDNLGQ-IGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 367 ~~Fwll~~~-~~~~~g~Gl~~i~n~~~-I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
++|..+.+. ++...+.++. ..-+.. +.+++|.++.+.+...++..+...++.+..|+++||++||+ .+...
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~-~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~------~l~~~ 87 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLP-LAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK------AVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc------hHHHH
Confidence 444444443 3333444433 333333 56678998889999999999999999999999999988652 23333
Q ss_pred HHHHHHHHHHH---Hhhc------cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHH
Q 040453 445 LLLSCIGHLLI---AFNV------PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVR 515 (547)
Q Consensus 445 ~~~~~i~~lll---~~~~------~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~ 515 (547)
.++.+++.+.. .... ...+++.-++.|++.+.........+.|.+..|+.++.-++...+..+|. ++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~ 166 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGAL-AIGAP 166 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHH-HHHHH
Confidence 33333222211 1111 11345567899999999988888889999998999998887766655554 55566
Q ss_pred HHHHHhH
Q 040453 516 VAGHLYD 522 (547)
Q Consensus 516 l~G~~yd 522 (547)
+.+.+.+
T Consensus 167 l~~~l~~ 173 (399)
T PRK05122 167 LGVLLYH 173 (399)
T ss_pred HHHHHHH
Confidence 6666654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.3e-05 Score=79.52 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhhhchheeecchh-hhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLG-QIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~-~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
++.++++..++...+.. ++.+-+. ++.+++|.+..+.+...++..+...+.++..|.++||+++| ..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k------~~l~~~~ 83 (400)
T PRK11646 11 GKYFLLIDNMLVVLGFF-VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK------PMIVTGM 83 (400)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch------HHHHHHH
Confidence 44444444444433333 3333333 34567899888889999999999999999999999988754 2445555
Q ss_pred HHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 446 LLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 446 ~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
++.+++.++....+. ..+++..++.|++.|.......+++.|.+..++.++.+|+......+|. .+++.+.|.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~g~l~~ 160 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGA-VIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 566666655544332 3456677888998887778888899999999999999999877777776 667777777773
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00024 Score=78.36 Aligned_cols=150 Identities=11% Similarity=0.176 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHH-HHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHH
Q 040453 37 WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLS-FFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFG 114 (547)
Q Consensus 37 w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is-~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~G 114 (547)
|..++...+.++.....+ +...+-+.+++|+|.++...+. ....++..+ ++.+|.+.||+|+|..+.+++++..+.
T Consensus 225 ~~~ll~~~l~~~~~~~~~--~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAM--SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 655555544444433333 3345556778999999988864 454445543 689999999999888877777766665
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 115 YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 115 y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
..++++... .. .+.+.+....++.+...++...+.....++..|+ .+|+..|+..+..++++.+.+.+...+.+
T Consensus 303 ~l~~~~l~~--~~-~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~ 377 (491)
T PRK11010 303 NAGYWLLSI--TD-KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE 377 (491)
T ss_pred HHHHHHHHh--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443211 11 2333322222221111122223334444445555 46888888888888887777655444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=77.51 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHH
Q 040453 368 DMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLL 447 (547)
Q Consensus 368 ~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~ 447 (547)
.++..|+.+++.......+..-..++.+++|.+..+.+...++..+...++.+..|+++||+++| ..+....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r------~~~~~~~~~ 110 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR------YGSAFLLML 110 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHH
Confidence 33444444444333222233334567778999888888888888899999999999999998854 233344445
Q ss_pred HHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhc
Q 040453 448 SCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGG 502 (547)
Q Consensus 448 ~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~ 502 (547)
.+++.++...... ..+++.-++.|++.+... .....++|+|-.|+-|+-.|+..
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~ 165 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAA 165 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHH
Confidence 5555544444332 334556678888887644 34567899998888888777764
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00051 Score=75.67 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=83.4
Q ss_pred cccccccccHHHHHHhCCChhhhH----------H--HHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 040453 52 ATYMFSLYSGDIKYALGYDQTTLN----------L--LSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMI 118 (547)
Q Consensus 52 t~Y~fSiys~~L~~~~~~sqs~l~----------~--is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~ 118 (547)
..|.-..|.|.+-++.|++..+.. . ......++... .+..+++.||+|+|.+++++.++..+...++
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 456777888888888898754211 1 11222233332 4778999999999999988888777776555
Q ss_pred HHHHhccccCchHHHH-HHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHhhhhhhHHHHHHHHHHHhCC
Q 040453 119 WLAVTKKIARPQVWHM-CLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKGYVGLSGAIITQLYRAFYGD 192 (547)
Q Consensus 119 ~l~~~g~i~~~~~~~l-~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~ 192 (547)
..... ..+....+.+ +++....+.| +. .....-..+-||.+ ||++.|+.....-+++++...++....+.
T Consensus 383 ~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 383 GFAYN-HLSTHGFLAIYVLAQFFANFG--PN-ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHHH-hcchhHHHHHHHHHHHHHhcC--CC-chhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 43332 1111111111 1222222222 11 11222346889875 99999999988889888888877777663
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-05 Score=91.26 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=107.0
Q ss_pred HhhccHHHHHHHHHHHHhhhchheeecchhh-hhhhcCCCCc--chhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChh
Q 040453 362 QALFSLDMLILFFATICGVGGTLTAIDNLGQ-IGGSLGYPKK--SISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRP 438 (547)
Q Consensus 362 q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~-I~~a~g~~~~--~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~ 438 (547)
+.+++.+|+.++++.++......++..-+.. +..+.+.+.. ..++..+++.+...++.+.+|+++||++||+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~----- 78 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNR----- 78 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHH-----
Confidence 4678899999998877764443333222222 2233443322 2466678888999999999999999988652
Q ss_pred HHHHHHHHHHHHHHH---HHHh-hccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHH
Q 040453 439 LMLTIILLLSCIGHL---LIAF-NVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNV 514 (547)
Q Consensus 439 ~~l~~~~~~~~i~~l---ll~~-~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~ 514 (547)
.+....++.++..+ +... .....+++.-++.|++.|.......++++|++..++.++..|+..++..+|. ++++
T Consensus 79 -~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~-~lg~ 156 (1146)
T PRK08633 79 -VIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI-LAGT 156 (1146)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH-HHHH
Confidence 22222222222221 1111 1224466677899999999999999999999999999999999988888887 7788
Q ss_pred HHHHHHhHH
Q 040453 515 RVAGHLYDK 523 (547)
Q Consensus 515 ~l~G~~yd~ 523 (547)
.+.|.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 888888765
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=75.86 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=77.8
Q ss_pred ccHHHHHHhCCChhhhHHH-HHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhcc----ccCchHH
Q 040453 59 YSGDIKYALGYDQTTLNLL-SFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKK----IARPQVW 132 (547)
Q Consensus 59 ys~~L~~~~~~sqs~l~~i-s~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~----i~~~~~~ 132 (547)
+.+.+++ +|++.++...+ +..+.++.. ..+++|++.||+|+|..+.++.++..+++.++....... +...+.|
T Consensus 232 ~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 232 TTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 3344454 99999998764 334434433 368899999999999999899988887776543321111 0012345
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhh
Q 040453 133 HMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVG 176 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~G 176 (547)
.++...++.+.+.+..+.+...-..+.+|+ +||++-|+..+..+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 455455555666677777777778899975 68999998766544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=79.39 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=93.5
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVAS 467 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~ 467 (547)
...+|.+++|.+..+.+...++..+...++.++.|+++||+++|+ .+....++..++.++...... ..+++..
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRP------VVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchH------HHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 466777889998888899999999999999999999999987652 333444445555555444332 2344333
Q ss_pred -HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 468 -IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 468 -~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++.|++.|..+.....++.++|. |+-++..|+..++..+|. .+++.+.|.+.|..
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~-~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFL-STLAPLNQYLFESF 170 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHH-HHHHHHHHHHHHHh
Confidence 67799998776667788899995 788999999888888876 45666777777643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=76.68 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhhchhee---ecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTA---IDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTI 443 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~---i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~ 443 (547)
+.-|++....+.+.....++ -.-..+|.++++.+..+.+..+++..+...++-+..|+++||+++| ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r------~~l~~ 79 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER------RSVAI 79 (393)
T ss_pred chHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch------HHHHH
Confidence 44567766666665544222 2234556667899988999999999999999999999999988754 36667
Q ss_pred HHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhH
Q 040453 444 ILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLG 508 (547)
Q Consensus 444 ~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~g 508 (547)
..++.+++.++..+.+. ..+++.-++.|++.|......+.++.|+|. ++.++-.|....+..+|
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 144 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGG 144 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHH
Confidence 77777777777666543 456677899999999999999999999996 77788877765443333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.7e-05 Score=77.36 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=91.7
Q ss_pred hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHH
Q 040453 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASI 468 (547)
Q Consensus 390 ~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~ 468 (547)
...+.+++|.+..+.+...++..+...++.+..|+++||++|| ..+.+..++..++.++...... ..+++.-+
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR------VFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe------ehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3456677899988999999999999999999999999998765 2344455555566555544433 34556778
Q ss_pred HHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHH
Q 040453 469 IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNV 514 (547)
Q Consensus 469 liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~ 514 (547)
+.|++.|.......++++|++..++-++..++...+..+|. ++++
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~ 136 (379)
T TIGR00881 92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG-GLLP 136 (379)
T ss_pred HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHH-HHHH
Confidence 99999999999999999999998888988888877776766 3444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00035 Score=75.36 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=66.3
Q ss_pred ccccccccccHHH-HHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHH-HHHHHHHHHHhcccc
Q 040453 51 GATYMFSLYSGDI-KYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNF-FGYFMIWLAVTKKIA 127 (547)
Q Consensus 51 Gt~Y~fSiys~~L-~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~-~Gy~l~~l~~~g~i~ 127 (547)
...|....|.|.. ++.+|+++.+...+.....++.. ..+.+|++.||+|+|.++.++.++.. .++..+..... .
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~- 328 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--A- 328 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--C-
Confidence 3355666777774 55689998887666555555544 36789999999999998877665543 23322111111 1
Q ss_pred CchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHh
Q 040453 128 RPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKG 173 (547)
Q Consensus 128 ~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a 173 (547)
.+.+.+.....+.+.+.+...........+.+|+ .||++.|+..+
T Consensus 329 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~ 374 (434)
T PRK15075 329 -PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS 374 (434)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence 1221111111111122222222333445677876 59999888543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=77.95 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=87.1
Q ss_pred hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc----c-chHH
Q 040453 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV----P-GGLY 464 (547)
Q Consensus 390 ~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~----~-~~l~ 464 (547)
..+..++.|.++.+.+...++..+...++.+..|+++||+++|+ .+....++.+++.++..... . ..++
T Consensus 49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 122 (438)
T TIGR00712 49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV------FLPAGLILSAAVMLLMGFVPWATSSIAIMF 122 (438)
T ss_pred hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce------ehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 34455567998888999999999999999999999999987652 22333444444444333211 1 1234
Q ss_pred HHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 465 VASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 465 ~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
+.-.+.|++.|..+......+.|+|..|+.|+..|+...+..++. .+.+.+.+.
T Consensus 123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~l~~~ 176 (438)
T TIGR00712 123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG-GIPPLLVLL 176 (438)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh-HHHHHHHHH
Confidence 456788999999999899999999999999999888766666655 333334443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=79.26 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=96.3
Q ss_pred hccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHH-HHhhhhhhchhhhhhccCCcHHHHHHHHHHH
Q 040453 34 TGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFF-KDLGANVGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 34 ~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~-~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
+..|+.++.-.++++..=. -|+-.---+++++.+|++.++.-++++. ..+.+..+++.|++.||+-++.++.+|..+.
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 3445555555555554322 2444335577889999999998887544 4444567999999999999999998888887
Q ss_pred HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhh
Q 040453 112 FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGIL 171 (547)
Q Consensus 112 ~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~ 171 (547)
.+.-+. .+.+ ..+|++.++=.+.|.|-....+.+-.-...+||+ +|+++-|+.
T Consensus 109 ~~Av~~-----~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 109 TLAVFA-----SGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHH-----HHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHh
Confidence 666433 3333 4688888888888899988888888889999996 799988764
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=73.53 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=73.9
Q ss_pred HhhccccccccccHHHH-HHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHH-HHHHHHHHHhc
Q 040453 48 AAAGATYMFSLYSGDIK-YALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFF-GYFMIWLAVTK 124 (547)
Q Consensus 48 l~~Gt~Y~fSiys~~L~-~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~-Gy~l~~l~~~g 124 (547)
++....|.+..|-|..- +++|+++.+...+.....++.. ..++.|++.||+|+|..+.+++++..+ ++.+.. ....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 308 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALLD 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 33444566666666654 7789998888776544445544 467899999999999987766555433 322221 1111
Q ss_pred cccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhh
Q 040453 125 KIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGIL 171 (547)
Q Consensus 125 ~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~ 171 (547)
. .+.+.+....++.+.+.+..+........+.+|+ +||++.|+.
T Consensus 309 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (394)
T TIGR00883 309 S---GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLA 353 (394)
T ss_pred C---CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeeh
Confidence 1 2334333334444444455555666667788986 689988874
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=79.87 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=100.2
Q ss_pred eecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHH
Q 040453 386 AIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLY 464 (547)
Q Consensus 386 ~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~ 464 (547)
+.....+|.++++.+..+.+..++.+.+..+...+.+|+++||++|| ..+....++.+++.++...... ..++
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk------~~l~~~~~~~~~~~~~~~~a~~~~~li 98 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK------RLLMLGGTLFGLASLAAAFSPTASWLI 98 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33346788889998888889999999999999999999999988754 3455555666666666555443 3455
Q ss_pred HHHHHHHhhhccchhhHHHHHHHhh-cCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 465 VASIIIGFCFGAQWPLVFAIISELF-GLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 465 ~~~~liG~~~G~~~~~~p~l~s~~F-G~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++-++.|++.|......-.++.+.| ..|+-++-.|+......+|+ .++|.+.|.+.|.
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~-~~gp~lgg~l~~~ 157 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA-AFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence 5668999999887776666677776 56888888999888888877 6778888887765
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=61.91 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=72.2
Q ss_pred hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCc
Q 040453 87 VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRG 165 (547)
Q Consensus 87 ~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG 165 (547)
.+++.|++.||+|+|..+.++.++..++..++... .+.|.+.+...+.+.+.+..+........+.+|+ +|+
T Consensus 14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 37899999999999999999998888887665432 2345555555566666666666666667788975 699
Q ss_pred chhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 166 VVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 166 ~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
.+.++......++..+-..+...+.+
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 99999988888887776665555543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=76.44 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=80.6
Q ss_pred hhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc----c-chHHHH
Q 040453 392 QIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV----P-GGLYVA 466 (547)
Q Consensus 392 ~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~----~-~~l~~~ 466 (547)
.+.++ |.++.+.+..+++..+..+++.+.+|+++||+++| .++.+..++.+++.+++.... . ..+++.
T Consensus 54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------hhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 44444 88888899999999999999999999999988765 244455555555555444321 1 134455
Q ss_pred HHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhH
Q 040453 467 SIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLG 508 (547)
Q Consensus 467 ~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~g 508 (547)
..+.|++.|..+.....++.|+|..|+-++..|+...+..+|
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 168 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 168 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence 678899999888888888999998888888888765554444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00026 Score=78.28 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhh-hhhcCCChhHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIF-LAKYKFPRPLMLTII 444 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l-~~r~~~~r~~~l~~~ 444 (547)
+.+|.++...++-..+--.+..-+.... +.+|+++.++....+...+...++.+..|+++||+ +|| | .+.+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr----r--~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR----M--AVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH----H--HHHHH
Confidence 4455555544443332222222333333 34788888888899999999999999999999998 654 2 44556
Q ss_pred HHHHHHHHHHHHhhc--cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCc--hhhhcchhccchhhHHHHHHHHHHHHH
Q 040453 445 LLLSCIGHLLIAFNV--PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKY--YSTLYNFGGAASPLGSYLLNVRVAGHL 520 (547)
Q Consensus 445 ~~~~~i~~lll~~~~--~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~--~g~nyg~~~~~~~~gs~~l~~~l~G~~ 520 (547)
.+++.++++++.... ...++++..++.++.|...+..+++++|.|..++ -.+-+++.+...-+|+ .++|.+.|.+
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~-~iap~l~g~L 161 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGS-IIAPIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHH-HHHHHHHHHH
Confidence 666677766554322 1235556667778888888888999999997642 2333444433333444 4455555555
Q ss_pred hH
Q 040453 521 YD 522 (547)
Q Consensus 521 yd 522 (547)
.+
T Consensus 162 ~~ 163 (493)
T PRK15462 162 QE 163 (493)
T ss_pred Hh
Confidence 44
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=78.45 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhhchheeecchhh-hhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhh-hhhhcCCChhHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQ-IGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI-FLAKYKFPRPLMLTII 444 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~-I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~-l~~r~~~~r~~~l~~~ 444 (547)
+.+|.++..-++--.+--.+...+.. +.+++|.+..++...++.+.....+.-+..|+++|| ++|| ..+.+.
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r------~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK------RTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH------HHHHHH
Confidence 55677666555543333333333333 344689888888888889998888888999999998 7755 345556
Q ss_pred HHHHHHHHHHHHhhcc--chHHHHHHHHHhhhccchhhHHHHHHHhhcCCc--hhhhcchhccchhhHHHHHHHHHHHHH
Q 040453 445 LLLSCIGHLLIAFNVP--GGLYVASIIIGFCFGAQWPLVFAIISELFGLKY--YSTLYNFGGAASPLGSYLLNVRVAGHL 520 (547)
Q Consensus 445 ~~~~~i~~lll~~~~~--~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~--~g~nyg~~~~~~~~gs~~l~~~l~G~~ 520 (547)
.++..++++++..... ..++++-++.|++.|...+..+++++|.|..++ .++-|++.+.+..+|+ .+++.+.|.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~-~~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS-LISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH-HHHHHHHHHH
Confidence 6666667665554432 234567788999999999999999999997553 3556777666666666 4555555555
Q ss_pred hH
Q 040453 521 YD 522 (547)
Q Consensus 521 yd 522 (547)
-|
T Consensus 167 ~~ 168 (489)
T PRK10207 167 AD 168 (489)
T ss_pred HH
Confidence 44
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00091 Score=71.22 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHhhhccHHH--HHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHH-HHHHhhhh-hhchhhhhhccCCcHHH
Q 040453 28 LAIQVITGRWFM--VFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLS-FFKDLGAN-VGILSGLINEITPPWVV 103 (547)
Q Consensus 28 ~~~~~~~~Rw~~--l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is-~~~~vG~~-~gi~~G~l~D~~Gp~~~ 103 (547)
-.++..+||+.. ++...+.++.....+ +...+.+.+++|+++++...+. ..+.++.. .++++|++.||+|+|..
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~ 278 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAFAG--SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS 278 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445566676443 333333333333223 3334557788999999888864 33333333 36899999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHH----HHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhH
Q 040453 104 LVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYI----CVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSG 179 (547)
Q Consensus 104 l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~----~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa 179 (547)
+.++.++..+....++.... .+ .+.|.+.... +.++.+.+..++..+..+.+.||.+ ..++..+..++++
T Consensus 279 l~~~~~~~~l~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 352 (402)
T PRK11902 279 LMLFGVLQAVSNLGYWVLAV--TP-KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGR 352 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHH
Confidence 87777776555443332111 11 1233332221 3445555555666666777788853 2344444556666
Q ss_pred HHHHHHHHH
Q 040453 180 AIITQLYRA 188 (547)
Q Consensus 180 ~I~s~i~~~ 188 (547)
.+.+.+...
T Consensus 353 ~~~~~~~G~ 361 (402)
T PRK11902 353 VYVGPTSGY 361 (402)
T ss_pred HHHHHHHHH
Confidence 655544333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=74.19 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=88.5
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASI 468 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~ 468 (547)
-+.++.+++|.+..+.+...++..+...++.+..|+++||+++|+ .+.+..++.+++.++........+++..+
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER------SVAAGLLLIAAGILIRSAPGTALLFAGTA 95 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH------HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 355677789999999999999999999999999999999988652 23333334444444432222234556778
Q ss_pred HHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 469 IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 469 liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
+.|++.|......+.++.|.|. ++-++..++...+..+|. .+++.+.+.+.
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~-~i~~~~~~~l~ 146 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGA-ALAAAATVPLA 146 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999988899999999994 777887777765555554 33444444443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=71.39 Aligned_cols=135 Identities=11% Similarity=0.103 Sum_probs=74.2
Q ss_pred ccccccccHH-HHHHhCCChhhhHHHHHHHHhh-hhhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 53 TYMFSLYSGD-IKYALGYDQTTLNLLSFFKDLG-ANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 53 ~Y~fSiys~~-L~~~~~~sqs~l~~is~~~~vG-~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
.|....|.+. +++.+|++.++...+.....+. ....++.|++.||+|+|.++.++.++..++...++..... ..+
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~ 342 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QSI 342 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CCh
Confidence 4544455554 4677899887655443322222 2235688999999999998888877665554333322211 122
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhh-hhhhHHHHHHHHHHHh
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGY-VGLSGAIITQLYRAFY 190 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~-~GLSa~I~s~i~~~~f 190 (547)
.+.+.+..++.+.+.+...........+.||. +|+++.|+.-.. ..+++.+-..+...+.
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322233333334333333333445678986 688888885332 3355555554444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00053 Score=73.30 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=127.5
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
....|.+.+..|+......+...-+.+|.++++.+..++...+++++....+|-+....+.||+ +|...+....
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l 85 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLL 85 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHH
Confidence 3566777778888888899999999999999999999999999999999999999999999965 5556788888
Q ss_pred HHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 446 LLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 446 ~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++.+++.++.+..+. ..+.++=++.|++-|..|++..++.+|+=..++-++-=++++++..++. +++.++...+=|.
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~~ 163 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHHH
Confidence 888999988877765 3455566999999999999999999999999999999999988877765 5566655554443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=78.07 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhhchheeecch--hhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNL--GQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~--~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
++++++...+.+...+|.++..++ .++.+++|++..+.+...++ +..-....+..|+++||+++ ..++.+.
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~------R~vllig 97 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGP------RPIFVLS 97 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCc------HHHHHHH
Confidence 455666666666666676666554 66777889988877766655 33334566678999998863 3466677
Q ss_pred HHHHHHHHHHHHhh------c-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHH
Q 040453 445 LLLSCIGHLLIAFN------V-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVA 517 (547)
Q Consensus 445 ~~~~~i~~lll~~~------~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~ 517 (547)
.++..++.++.... . ...+++.-++.|++-|.........+.++| .++-|.-.|+......+|+.++++...
T Consensus 98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766554 1 123455667888888888888888899999 588899999999999999866665444
Q ss_pred HH
Q 040453 518 GH 519 (547)
Q Consensus 518 G~ 519 (547)
+.
T Consensus 177 ~l 178 (591)
T PTZ00207 177 AF 178 (591)
T ss_pred HH
Confidence 33
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.056 Score=57.96 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=98.7
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-----h-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhh
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-----S-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAK 432 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-----a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r 432 (547)
.++|.+++++-..+++..+++.-+ .++-++.- + +|++.++.+.+-++.+....+|=+..|++..+ |
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a-----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~ 271 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLA-----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---R 271 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHH-----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 345566666666555544443222 13333322 2 57888888999999999999999999987663 3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHH--Hhh-c-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhH
Q 040453 433 YKFPRPLMLTIILLLSCIGHLLI--AFN-V-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLG 508 (547)
Q Consensus 433 ~~~~r~~~l~~~~~~~~i~~lll--~~~-~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~g 508 (547)
.+..|... ......+++..++ +-. . ...+..+..++|++.|..-.-.-+...|+=...+-|.-=|.-..+.+++
T Consensus 272 ~~~~~~a~--~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A 349 (403)
T PF03209_consen 272 LGKKRTAA--LGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA 349 (403)
T ss_pred CCchHHHH--HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence 23334322 2223333333222 211 1 2345678899999999988877788888887788776656655555555
Q ss_pred HHHHHHHHHHHHhHHHHhh
Q 040453 509 SYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 509 s~~l~~~l~G~~yd~~~~~ 527 (547)
- .++..+.|.+.|--..-
T Consensus 350 ~-Glg~~~GG~~~D~~~~~ 367 (403)
T PF03209_consen 350 R-GLGTFLGGALRDLVRAL 367 (403)
T ss_pred H-HHHHHHHHHHHHHHHHh
Confidence 4 56667888888876443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=83.93 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=105.1
Q ss_pred HHhhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcC----CCC-cchhhHHHHHHHHHhhhhhhcchhhhhhhhhcC
Q 040453 361 LQALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLG----YPK-KSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK 434 (547)
Q Consensus 361 ~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g----~~~-~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~ 434 (547)
++++|+++|+.+|+..++....-.++-..+..+.. .+. .+. ...++..++..+...+.-+++|+++||++||+-
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 34678999999988766654321122122222211 221 111 123455567777888889999999999987631
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHH
Q 040453 435 FPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNV 514 (547)
Q Consensus 435 ~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~ 514 (547)
+ + .......+..+++.+.+.......+++..++.|++.+......-+++.|++..+..++-.+++..+..+|. ++++
T Consensus 85 ~-~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~-~igp 161 (1140)
T PRK06814 85 A-K-ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI-LLGT 161 (1140)
T ss_pred H-H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH-HHHH
Confidence 1 1 11111112222222222222234577788999999999999999999999999999999999999999987 7788
Q ss_pred HHHHHHhHHHH
Q 040453 515 RVAGHLYDKEA 525 (547)
Q Consensus 515 ~l~G~~yd~~~ 525 (547)
.+.|.+.+...
T Consensus 162 ~l~g~l~~~~~ 172 (1140)
T PRK06814 162 IIGGLATISGN 172 (1140)
T ss_pred HHHHHHHhccc
Confidence 89998887543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=75.21 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=92.4
Q ss_pred hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHh--hc-cchHHHHHHHHHh
Q 040453 396 SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAF--NV-PGGLYVASIIIGF 472 (547)
Q Consensus 396 a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~--~~-~~~l~~~~~liG~ 472 (547)
+.+.++.+.+...+.+.+...++.+..|+++||+++|+ .+....++..++.++... .. ...+++.-++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 45666677788999999999999999999999988652 333333444444433321 11 2345667789999
Q ss_pred hhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 473 CFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 473 ~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
+.|..+...+.+++|+|..|+-++-.++...+..+|. ++++.+.+.+.|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~l~~~l~~~ 193 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT-FIFLPISGWLCES 193 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 9999999999999999999999999999988888887 6677788877765
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00029 Score=77.18 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=92.1
Q ss_pred hhhhhhhcCCC---CcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHH
Q 040453 390 LGQIGGSLGYP---KKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYV 465 (547)
Q Consensus 390 ~~~I~~a~g~~---~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~ 465 (547)
..+|.++.+.+ +.+.+...++..++..+|.+++|+++||++|| ..+.+..++..++.++..+... ..+++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK------KVLLLSTLVTAVSGVLTAFSPNYTVFLV 185 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch------HHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 45677788887 66788899999999999999999999988764 2444455555666555554433 34556
Q ss_pred HHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHH
Q 040453 466 ASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 466 ~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
.-++.|++.|+.+.....+++|++..|+-+...++...+..+|. ++.+.+.+
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~ 237 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL-VLLPLVAY 237 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 77899999999999999999999999988887777766666665 44444443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0034 Score=67.85 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=68.6
Q ss_pred CChhhhHHHHHHHHhhhhhh-chhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccC--chHHHHHHHHHHhhccc
Q 040453 69 YDQTTLNLLSFFKDLGANVG-ILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIAR--PQVWHMCLYICVGANSQ 145 (547)
Q Consensus 69 ~sqs~l~~is~~~~vG~~~g-i~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~--~~~~~l~~~~~lgg~g~ 145 (547)
++..-...+..+.++|..+| ++.|++-||+|+|.+...-.+..-+.-.+.. .+..+++ .-.+.+|+|=++-|+|.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~--~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG--LSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc--cCCCCCCCcchhhHHHHHHHHhhccc
Confidence 44444555666667888776 8899999999999876555555444433222 2222322 23455777877888888
Q ss_pred ccccchhhhhhhhcCC--CCCcchhhhhHhhhhhh
Q 040453 146 SFANTGSLVTCVKNFP--ESRGVVLGILKGYVGLS 178 (547)
Q Consensus 146 ~~~~ta~l~t~~~nFP--~~RG~v~Gi~~a~~GLS 178 (547)
|.=| ..-.+.+.-+- ++||+-.+++.++-|++
T Consensus 159 GGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 159 GGDY-PLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred cCCC-cchHHHhhhhhhhccccceeEEEEEecchh
Confidence 7544 45555666674 46899988876666654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=61.42 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred HHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHH
Q 040453 408 VSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIIS 486 (547)
Q Consensus 408 Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s 486 (547)
.+..++.+.++++..|++.||++|| ..+.....+..++.++...... ..+.+...+.|++.+.........+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456788899999999999988654 2333444444455444433332 33455778999999999999999999
Q ss_pred HhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 487 ELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 487 ~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
|.+..++.++..++......++. .+++.+.+.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 114 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGP-LLGPPLGGVLAQFL 114 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHH-HHhHHhHHHHhccc
Confidence 99999999999999988888887 66778888887653
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=71.45 Aligned_cols=136 Identities=13% Similarity=0.019 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
..|+++++.++.-...-.....-..++-++++.++.+.+...+.+.+...++-+..|.+.||+++| ..+.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r------~~l~~g~~ 99 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHH
Confidence 466777766655444444444455666667899988999999999999999999999999998755 34555666
Q ss_pred HHHHHHHHHH---hhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh-hcchhccchhhHH
Q 040453 447 LSCIGHLLIA---FNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST-LYNFGGAASPLGS 509 (547)
Q Consensus 447 ~~~i~~lll~---~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~-nyg~~~~~~~~gs 509 (547)
+.+++.++.. ..+. ..++++-++.|++.|........++.|.. .++-+. .-++......+|.
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~ 166 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGA 166 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHH
Confidence 6666665532 2222 34556778999999999999999998864 444443 3344433333333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=74.01 Aligned_cols=129 Identities=21% Similarity=0.169 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHHHHhhhch---hee-ecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHH
Q 040453 365 FSLDMLILFFATICGVGGT---LTA-IDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLM 440 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~G---l~~-i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~ 440 (547)
++++|+..+..+.+..-+. +.. -+-+.+|.+++|.+ ...+.++...++.+++.-.+.|-+||.++ |.++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfG------Rr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFG------RRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhc------chHH
Confidence 5788888887655543222 211 12357888899864 55678888999999999999999999998 4578
Q ss_pred HHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh
Q 040453 441 LTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG 501 (547)
Q Consensus 441 l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~ 501 (547)
+....++.++|+++-+.... ..+..+.++.|+++|.... ....++|.--.|+-+.-+.+.
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~ 171 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIA 171 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHH
Confidence 88888999999988776554 3455578999999988874 566689999877765544433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00095 Score=70.88 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=88.6
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVAS 467 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~ 467 (547)
-..+|.++++.++.+.+...+.+.+...++.+..|+++||++|| + .+....+..+.+.+...... ...+.+.=
T Consensus 13 ~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 13 VLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR----W--FLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred hHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch----H--HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 45677788999888889999999999999999999999999754 1 22222222223322222212 23455667
Q ss_pred HHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 468 IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 468 ~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
++.|++.|...... ..++|+|-.|+-++..++...+..+|. ++++.+.+.+.+
T Consensus 87 ~l~G~g~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~-~l~~~~~~~l~~ 139 (368)
T TIGR00903 87 LLAALGQPFLLNAF-APAASQIREERRDLVISLLSFAMYLGI-IFALAAGLKIYT 139 (368)
T ss_pred HHHHhHhHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88899988654344 445899989999999999988888887 556666666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0043 Score=65.71 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=80.6
Q ss_pred hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhh
Q 040453 395 GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-PGGLYVASIIIGFC 473 (547)
Q Consensus 395 ~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~ 473 (547)
+-.|+++.+++.+.+..++..++-.+...-..|+-.+ +....+....+++.=..+++.... +..++.++.+--++
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~----~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~ 365 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG----NIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS 365 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhcccccccccc----chhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 4578888888888888888777776666655553321 111223333333333333333222 45677788888887
Q ss_pred hccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhhc
Q 040453 474 FGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 474 ~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~~ 528 (547)
--....-.-.++..+-+...=|+.=|+......++= .++|.+.|.++..-..+|
T Consensus 366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaR-aiGPlv~g~i~~Ws~~~~ 419 (451)
T KOG2615|consen 366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALAR-AIGPLVSGVIFSWSQGAQ 419 (451)
T ss_pred HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHH-HhhhhhhheeEEEecCCC
Confidence 776667777778877777777888888766666665 567777777665544444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0031 Score=67.31 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=78.3
Q ss_pred hHHHHHHhhhccHH--HHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcH
Q 040453 25 MKSLAIQVITGRWF--MVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPW 101 (547)
Q Consensus 25 ~~~~~~~~~~~Rw~--~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~ 101 (547)
.++..|+..+||-+ .+++..+.+++......+..|- ++..++ +..+...+.....++.. ..++.|++.||+|+|
T Consensus 211 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~ 287 (437)
T TIGR00792 211 LKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY--FTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK 287 (437)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee--EeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 45566677677633 3333333333332221221111 122334 33344444333344444 367899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhc-------C-CCCCcchhhhhHh
Q 040453 102 VVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKN-------F-PESRGVVLGILKG 173 (547)
Q Consensus 102 ~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~n-------F-P~~RG~v~Gi~~a 173 (547)
.++.+|.++..+++.++++.. .+.+.+....++.+.+.+..+........+. . ++++|.+.|+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 288 ILFAGGILLMVLGYLIFFFAG------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 999999999888887765421 1233333344444444444332221111111 1 3457888887644
Q ss_pred hh----hhhHHHHHHHH
Q 040453 174 YV----GLSGAIITQLY 186 (547)
Q Consensus 174 ~~----GLSa~I~s~i~ 186 (547)
+. +++..+...+.
T Consensus 362 ~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 362 VRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44 44444444443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=69.38 Aligned_cols=146 Identities=13% Similarity=0.030 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhhchheee-cchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 368 DMLILFFATICGVGGTLTAI-DNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 368 ~Fwll~~~~~~~~g~Gl~~i-~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
.|+++...+++ .|....+. .-..++.++.+.++.+.+...+...+...++.+..|++.||+++| ..+.+..+
T Consensus 4 ~~~~~~~~f~~-~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r------~~~~~g~~ 76 (410)
T TIGR00885 4 PFALITSLFAL-WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK------AGILLGLF 76 (410)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence 35555543333 33333333 333555667899888899999999999999999999999988754 35556666
Q ss_pred HHHHHHHHHHhhc----cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 447 LSCIGHLLIAFNV----PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 447 ~~~i~~lll~~~~----~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
+.+++.+++.... ...+.+..++.|++.|.......+.+.+....++.++.-++......+|. .+++.+.+.+.
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~~g~~i~~~l~ 154 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS-IIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7777766543221 12345677899999999999888888888776777777776655555655 44555555553
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0037 Score=64.79 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=78.5
Q ss_pred HHHHH--HhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHH
Q 040453 61 GDIKY--ALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLY 137 (547)
Q Consensus 61 ~~L~~--~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~ 137 (547)
.-+++ ++|++.++........-.+... .+.++++.||+|+|..+.++.++..++..+.+.. .+. ...+ .+
T Consensus 165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~~~---~~~~---~~ 237 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-HGY---VAMW---FV 237 (310)
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCH---HHHH---HH
Confidence 34554 3799988877753333333333 6899999999999998889988888887555432 111 1122 22
Q ss_pred HHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 138 ICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 138 ~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
. +.|.+.+..+........+.+|++.|.+++++ ....+++++...+...+
T Consensus 238 ~-l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 238 L-ALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSL 287 (310)
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHH
Confidence 2 34466667777778888899999999999986 34456666655544433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00039 Score=79.28 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=100.2
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc---------
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV--------- 459 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~--------- 459 (547)
-+.+|-++.++++.+.+.+++...+++.++.+..|++.||.+|| .++.+..++++++.++++..+
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~------~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc------eEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 34556667899999999999999999999999999999976543 344455555666665543321
Q ss_pred ------------------------------------------c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh
Q 040453 460 ------------------------------------------P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST 496 (547)
Q Consensus 460 ------------------------------------------~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~ 496 (547)
. ..++++=++.|++.+..+.+.++++.|.+..++-+.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 0 123457799999999999999999999999999999
Q ss_pred hcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 497 LYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 497 nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
..++...+..+|+ ++++.+.|.+.+.
T Consensus 209 ~~~i~~~~~~iG~-~lG~llgg~l~~~ 234 (633)
T TIGR00805 209 YIGILESIAVFGP-AFGYLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHhc
Confidence 9999988888887 6788777777654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=63.83 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=98.3
Q ss_pred hhccHHH-HHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHH
Q 040453 33 ITGRWFM-VFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVL 110 (547)
Q Consensus 33 ~~~Rw~~-l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl 110 (547)
.++|.+. ++++.+++...+..|.|. +..+++.-+++......+-..+.+... +.+..+++..|+|++.+++++.+.
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~ 282 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVA 282 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444544 566777788888888876 444665555665544433222223333 467899999999999999999988
Q ss_pred HHHHHHHHHHHHhccccCchHHHHHH-H--HHHhhcccccccchhhhhhhhcCCC-CCcchhhhhH-hhhhhhHHHHHHH
Q 040453 111 NFFGYFMIWLAVTKKIARPQVWHMCL-Y--ICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILK-GYVGLSGAIITQL 185 (547)
Q Consensus 111 ~~~Gy~l~~l~~~g~i~~~~~~~l~~-~--~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~-a~~GLSa~I~s~i 185 (547)
..+=+.++.. ..+ +..+...+ . ..+=|..-+.+..+++.-..++.|+ .|.++-|+.. ..+|+|+.+-+.+
T Consensus 283 ~~vR~~l~a~----~~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 283 YAVRWLLYAY----FSD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HHHHHHHHHH----hcC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666555422 111 12221111 1 1223444445667888888899986 5899999874 4679999988877
Q ss_pred HHHHhCC
Q 040453 186 YRAFYGD 192 (547)
Q Consensus 186 ~~~~f~~ 192 (547)
.-.+++.
T Consensus 358 gG~l~~~ 364 (400)
T PF03825_consen 358 GGWLYDA 364 (400)
T ss_pred HHHHHHH
Confidence 7777764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0051 Score=66.56 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=67.0
Q ss_pred HHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHh
Q 040453 63 IKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVG 141 (547)
Q Consensus 63 L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lg 141 (547)
+++.+|.+......+.+...++.. ..++.+++.||+|+|.++.+|.++..+|+.++++. +..+.|.+.....+.
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-----SVWSLPVALVALAIA 329 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHH
Confidence 355677665443333333334443 36789999999999999999999988998776532 123455444444455
Q ss_pred hcccccccchhhhhhhhcCC--------CCCcchhhhhHh----hhhhhHHHHHHH
Q 040453 142 ANSQSFANTGSLVTCVKNFP--------ESRGVVLGILKG----YVGLSGAIITQL 185 (547)
Q Consensus 142 g~g~~~~~ta~l~t~~~nFP--------~~RG~v~Gi~~a----~~GLSa~I~s~i 185 (547)
+.|.+...........+.=| +++|...|+... ..++++++.+.+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655554333322222222 234777776433 334444444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0029 Score=69.34 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=103.2
Q ss_pred hccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcc-hhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHH
Q 040453 364 LFSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKS-ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLT 442 (547)
Q Consensus 364 l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~-a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~ 442 (547)
.+.+.+.+....|+.-.=....+ -..+|.+++|.++++ .+...+.+..+-.+..+.+|++.||++-| + ++.
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~s~--a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~-vL~ 96 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGESF--ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----P-VLV 96 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchHHH--HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----H-HHH
Confidence 34455555555444432222122 233566689999998 88999999999999999999999999744 3 333
Q ss_pred HHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 443 IILLLSCIGHLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 443 ~~~~~~~i~~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
+..+.-.+..+++.+.. ...+.+.=++.|++-|..+ ..-.+++.+|-.|++++-.++...+..+|. ++++++.+.
T Consensus 97 l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~-~Ia~~L~ql 172 (511)
T TIGR00806 97 LQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGV-FLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333344444444332 2345556699999999999 999999999999999999999988888887 556666655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=63.16 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=89.1
Q ss_pred ccccccccccHH-HHHHhCCChhhhHHHH-HHHHhhhhhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 040453 51 GATYMFSLYSGD-IKYALGYDQTTLNLLS-FFKDLGANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIAR 128 (547)
Q Consensus 51 Gt~Y~fSiys~~-L~~~~~~sqs~l~~is-~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~ 128 (547)
|.-=.||.|=|+ ++++|+++..+...++ .+..+|+..=+.+|.+.||+|++.++++--+...++-....+..++.-..
T Consensus 232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~ 311 (417)
T COG2223 232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHG 311 (417)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccC
Confidence 333356666555 6789999998876664 44445556678999999999887777666666555544443332222101
Q ss_pred chHHHHH-HHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhHhhhhhhHHHHHHHHHHHhC
Q 040453 129 PQVWHMC-LYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYG 191 (547)
Q Consensus 129 ~~~~~l~-~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~ 191 (547)
.+.+... .+..+. +-.+..|-++-+-.-+-||++-|.+.|+.-+.-|++|+.+.+.....++
T Consensus 312 ~~~~~~~~~~l~l~-~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 312 GSFVVFVAVFLALF-VFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred cchHHHHHHHHHHH-HHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 2222211 122211 2223444467778888999999999999999999999777766655544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.027 Score=62.03 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=103.4
Q ss_pred HHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHH--Hh
Q 040453 47 MAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLA--VT 123 (547)
Q Consensus 47 ~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~--~~ 123 (547)
|..+| .++=+.|+..+-++-|+++.+.....+...+-. .+.+.+.++.||+|+|+.++++..+..+-..++-.. ..
T Consensus 281 qq~sG-i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 281 QQFSG-INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHhcC-cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 445667888899999999998777655544444 358999999999999999999988876665544321 11
Q ss_pred ccccCchHHH---HHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHH
Q 040453 124 KKIARPQVWH---MCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLIL 199 (547)
Q Consensus 124 g~i~~~~~~~---l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fll 199 (547)
.... ...+- .+.+......+.|.. ..+.--...-||. .|..+........=++.++....+.-+.+- .+.|.+
T Consensus 360 ~~~~-~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~~~f 436 (485)
T KOG0569|consen 360 NSFG-SWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGPYVF 436 (485)
T ss_pred HHhh-hHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhh
Confidence 1111 11111 112222233333322 1233445677865 799999888888777777777666555443 122443
Q ss_pred HHHHHHHHHHHHhhheeeecccccC
Q 040453 200 FIGWLPAAISFAFLRTIRILKVIRQ 224 (547)
Q Consensus 200 fla~~p~~v~li~~~~ir~~~~~~~ 224 (547)
++=+.|.++ ...++.|.+|+.+.
T Consensus 437 ilF~i~~~~--~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 437 ILFVIPLAI--FLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHH--HHHHHHHhCcccCC
Confidence 333344333 34456677787753
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.023 Score=63.40 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHhhhccHH--HHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHH
Q 040453 26 KSLAIQVITGRWF--MVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWV 102 (547)
Q Consensus 26 ~~~~~~~~~~Rw~--~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~ 102 (547)
++=.|-+..+|.+ .++.+.+..++.+.. |.+.---.++.+|.+..+...+..+..+|+.. ++..+++.+|++++.
T Consensus 208 ~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~--~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~ 285 (524)
T PF05977_consen 208 REGLRYVRSSPPLRSVLLRSFLFNLFASAV--WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR 285 (524)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhHH--HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence 3333334445543 234444445554443 33432234678999999888887777888765 677888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCC-CcchhhhhHh----hhhh
Q 040453 103 VLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPES-RGVVLGILKG----YVGL 177 (547)
Q Consensus 103 ~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~-RG~v~Gi~~a----~~GL 177 (547)
.+.++.+..++....+.+ . .+.|..+...++.|.+....++..-+..+++=|++ ||.+.++... ...+
T Consensus 286 lv~~~~~~~a~~~~~lal-----~--~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l 358 (524)
T PF05977_consen 286 LVLLASLLFALALLLLAL-----S--PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL 358 (524)
T ss_pred hhHHHHHHHHHHHHHHhc-----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence 777888776666554422 2 45666666666666666666555555567778975 9999998532 3334
Q ss_pred hHHHHHHHHHH
Q 040453 178 SGAIITQLYRA 188 (547)
Q Consensus 178 Sa~I~s~i~~~ 188 (547)
|+.+...+.+.
T Consensus 359 Gsll~G~la~~ 369 (524)
T PF05977_consen 359 GSLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.026 Score=60.74 Aligned_cols=155 Identities=15% Similarity=0.254 Sum_probs=91.9
Q ss_pred chHHHHHHhhhcc-HHHHHHHHHHH-HhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCc
Q 040453 24 NMKSLAIQVITGR-WFMVFASFLIM-AAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPP 100 (547)
Q Consensus 24 ~~~~~~~~~~~~R-w~~l~a~~~v~-l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp 100 (547)
+.++..|...+|| |..+.+..+++ +.....-.+..| -.+..+|.+ ...+.+.....+.+. ..++.+++.||+|+
T Consensus 213 ~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk 289 (428)
T PF13347_consen 213 SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGK 289 (428)
T ss_pred ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455566777777 55555555443 444433333333 344445544 344444444555554 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcC--------CCCCcchhhh--
Q 040453 101 WVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNF--------PESRGVVLGI-- 170 (547)
Q Consensus 101 ~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nF--------P~~RG~v~Gi-- 170 (547)
|.+..++.++..+++.++++.-. .+.|.++...++.|.+.+..+.........-- .++.|...|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 290 KKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred eeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 99999999999999988876532 24455666666666665554422222222211 2334666665
Q ss_pred --hHhhhhhhHHHHHHHH
Q 040453 171 --LKGYVGLSGAIITQLY 186 (547)
Q Consensus 171 --~~a~~GLSa~I~s~i~ 186 (547)
.|-..|+++.+...+-
T Consensus 365 ~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 3666677777666444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0097 Score=63.88 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=100.1
Q ss_pred hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHH
Q 040453 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASI 468 (547)
Q Consensus 390 ~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~ 468 (547)
...|.++.|++.++.+.+-+.++|.=.++...+|.+|||...| .++.+.+++.++..+++-+... ..+.+.-.
T Consensus 52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr------~fm~~gLilsai~nil~Gfs~s~~~~~~l~~ 125 (448)
T COG2271 52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR------YFMAFGLILSAIVNILFGFSPSLFLFAVLWV 125 (448)
T ss_pred cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc------eeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456667789999999999999999999999999999966532 3566666777777776655543 23344568
Q ss_pred HHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHH--HHHhHHH
Q 040453 469 IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVA--GHLYDKE 524 (547)
Q Consensus 469 liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~--G~~yd~~ 524 (547)
+.|+--|.-|.-.--++..+|..|.=|+-|++-.++--+|+-+ .+.+. +.+.++.
T Consensus 126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~~~~ 182 (448)
T COG2271 126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFAFHG 182 (448)
T ss_pred HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988887777733 44555 6666554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.01 Score=64.79 Aligned_cols=125 Identities=23% Similarity=0.378 Sum_probs=97.6
Q ss_pred hhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHH
Q 040453 394 GGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV---PGGLYVASIII 470 (547)
Q Consensus 394 ~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~---~~~l~~~~~li 470 (547)
.+.+|++++++...++.++-..-+--++.||++||+.-+ ..++++.-+++++||+++.... +..++++.+++
T Consensus 53 ~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~-----~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I 127 (498)
T COG3104 53 GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT-----RRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALI 127 (498)
T ss_pred cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 334779999999999999999999999999999998532 3356777888999999887653 46789999999
Q ss_pred HhhhccchhhHHHHHHHhhcCCchhh--hcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 471 GFCFGAQWPLVFAIISELFGLKYYST--LYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 471 G~~~G~~~~~~p~l~s~~FG~k~~g~--nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++++|..=+=..+++.|.|..++--+ -+++.+.+.-+|+ +++|.+.+.+-+..
T Consensus 128 ~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs-l~~p~i~~~~~~~~ 182 (498)
T COG3104 128 IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS-LIAPIITGLLAINY 182 (498)
T ss_pred HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH-HHHHHHHHHHHHhh
Confidence 99999999999999999998665433 3444566666777 56777766665544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=61.19 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=108.6
Q ss_pred hhccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChh-hhHH--HHHHHHhhhhhhchhhhhhccCCcHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQT-TLNL--LSFFKDLGANVGILSGLINEITPPWVVLVLGAV 109 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs-~l~~--is~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~v 109 (547)
.++|...-+.-...|-++|.+ .+--|++++-++.+.+.. .... ++.... ...+++.++.||+|+|+.++.|.+
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~-~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~---~~t~~~~~lvd~~gRr~lll~s~~ 367 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGIN-YVFYYSTTIFKSAGLKSDTFLASIILGVVNF---LGTLVATYLVDRFGRRKLLLFGAA 367 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCc-eEEeehHHHHHhcCCCCchHHHHHHHHHHHH---HHHHHHHHHHHHhccHHHHHHhHH
Confidence 344455444444445555554 456788888888887744 2222 122222 235666999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc------CchHH-HHHHHHHHhhcccccccchhhh--hhhhcCCC-CCcchhhhhHhhhhhhH
Q 040453 110 LNFFGYFMIWLAVTKKIA------RPQVW-HMCLYICVGANSQSFANTGSLV--TCVKNFPE-SRGVVLGILKGYVGLSG 179 (547)
Q Consensus 110 l~~~Gy~l~~l~~~g~i~------~~~~~-~l~~~~~lgg~g~~~~~ta~l~--t~~~nFP~-~RG~v~Gi~~a~~GLSa 179 (547)
...++..++...+..... ....+ ..+.+..+...+.++ +++. -...-||. -|+.+.++..+..-+..
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~---g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW---GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWN 444 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc---ccchhhhhhccCcHhHHhhhHHHHHHHHHHHH
Confidence 999888877655444321 11111 122233334444444 2444 45577996 49999999988888888
Q ss_pred HHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHHhhheeeecccccC
Q 040453 180 AIITQLYRAFYGDD--TKSLILFIGWLPAAISFAFLRTIRILKVIRQ 224 (547)
Q Consensus 180 ~I~s~i~~~~f~~~--~~~fllfla~~p~~v~li~~~~ir~~~~~~~ 224 (547)
.+.+..+...-... ...|++|-++....... ++.-.+|+.+.
T Consensus 445 ~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~---fv~~~~pETkg 488 (513)
T KOG0254|consen 445 FLISFFFPFITEALGIGGTFGYFGGICLLSLII---FVFFFVPETKG 488 (513)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHH---HheEEcccCCC
Confidence 88887776665543 34555555544433221 33444566543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.11 Score=56.13 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=77.5
Q ss_pred HHHhhcc--HHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCc--c-hhhHHHHHHHHHhhhhhhcchhhhhhhhhc
Q 040453 360 ILQALFS--LDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKK--S-ISTFVSLVSIWNYLGRVVSGFVSEIFLAKY 433 (547)
Q Consensus 360 ~~q~l~t--~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~--~-a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~ 433 (547)
++++.++ ...|-+|+++.. +|-..+.|=.|.+= +..-++. . .+..-++..+.++++-+..|++..++.+
T Consensus 240 ~~~~y~~~~ll~WSlWWa~at---cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~-- 314 (412)
T PF01770_consen 240 FKSCYSNPRLLLWSLWWAFAT---CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR-- 314 (412)
T ss_pred HHHHhcCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH--
Confidence 3444444 456888887654 33333334444432 3311111 1 2334466667777888888888443321
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcch
Q 040453 434 KFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF 500 (547)
Q Consensus 434 ~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~ 500 (547)
...+.+.+..++.+..+++...... ...|++.++.+..|-....+..+=++..--.+.||-.+|+
T Consensus 315 --~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 315 --WGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGI 380 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeee
Confidence 1234455555555555444444332 3456778889999988888888888877766777766666
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.62 Score=51.22 Aligned_cols=138 Identities=21% Similarity=0.224 Sum_probs=79.3
Q ss_pred HHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh--cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCCh
Q 040453 360 ILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS--LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPR 437 (547)
Q Consensus 360 ~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a--~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r 437 (547)
+....|++.|-++.++.++.... .-+.+..-.-... +|.++..........+.....+=+++..+.++++|| +
T Consensus 229 ~~~~~~Nrp~~~~l~~~l~~~~~-~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk----~ 303 (467)
T COG2211 229 FLLIFKNRPLLLLLLMNLLLFIA-FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK----K 303 (467)
T ss_pred HHHHHccchHHHHHHHHHHHHHH-HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH----H
Confidence 44667888888877755554332 1111111111222 233222333334444444455578888888888765 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHhhhccchhhHHHHHHHh-------hcCCchhhhcchhccc
Q 040453 438 PLMLTIILLLSCIGHLLIAFNVPG---GLYVASIIIGFCFGAQWPLVFAIISEL-------FGLKYYSTLYNFGGAA 504 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~~~~---~l~~~~~liG~~~G~~~~~~p~l~s~~-------FG~k~~g~nyg~~~~~ 504 (547)
+..+..++.+++.+++.+.+.. .+++..++.++..+....+..++++|. =|.|.=|..|+.+...
T Consensus 304 --~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 304 --LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 3444456666666655444422 234455788888888888888888775 2567777888887544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.046 Score=58.78 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=84.7
Q ss_pred HHHhhhcc--HHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHH
Q 040453 29 AIQVITGR--WFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLV 105 (547)
Q Consensus 29 ~~~~~~~R--w~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~ 105 (547)
.++..++| .+-|++-++.+-...+.-+++ .---++.+||+|.|+-.++...++.+.. ++++|++-||+|+|.++.
T Consensus 245 ~k~i~~~~~i~~FLiA~~~~~DGv~til~~~--~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~ 322 (438)
T COG2270 245 FKEIRGRKNLVLFLIARFFYIDGVNTILAMG--GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM 322 (438)
T ss_pred HHHHhcccchHHHHHHHHHHHhhHHHHHHHH--HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh
Confidence 34444444 333555555444444443332 1223568999999999998888888864 799999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCC-cchhhh
Q 040453 106 LGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESR-GVVLGI 170 (547)
Q Consensus 106 iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~R-G~v~Gi 170 (547)
+|-+...+-.. +.. ..+. ..-+|. +..+-|...|-....+=.--.|+.|++| |.--|+
T Consensus 323 ~~lvi~~~~~~--~~~-~~~~-~~~f~i---~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl 381 (438)
T COG2270 323 IGLVILSIAAL--YLI-FLEG-ELDFWI---LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL 381 (438)
T ss_pred HHHHHHHHHHH--HHH-Hccc-cHHHHH---HHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence 88888655533 222 2222 234553 4444555666666677777889998755 555444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.07 Score=58.93 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcH--H
Q 040453 26 KSLAIQVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPW--V 102 (547)
Q Consensus 26 ~~~~~~~~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~--~ 102 (547)
.+..|+..+.|-+......+....-|..-..+....-.++.+|++++|+..+.+..++.+.. .++.|++.||+||| .
T Consensus 271 ~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~ 350 (477)
T PF11700_consen 271 WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR 350 (477)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 44456666666444333333333344444444444456778999999999987777777765 68999999999999 5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCC
Q 040453 103 VLVLGAVLN----FFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESR 164 (547)
Q Consensus 103 ~l~iG~vl~----~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~R 164 (547)
++++..++. ..|++.++ ...+...+.|.+.++.++.|...|..+.++=..-.+-=|+.|
T Consensus 351 ~l~~~l~~~~~i~~~g~~G~~---~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~ 413 (477)
T PF11700_consen 351 TLLISLILWIIIPLYGLFGFW---PSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR 413 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence 554444333 22222221 112222456777778888888888777777776777778644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.64 Score=51.25 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=90.8
Q ss_pred cCCCCcchhhHHHHHHHHHhhhhhhcc-hhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 040453 397 LGYPKKSISTFVSLVSIWNYLGRVVSG-FVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFG 475 (547)
Q Consensus 397 ~g~~~~~a~~~Vsl~si~n~~GRl~~G-~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G 475 (547)
.+-++.+.+.+.++.++.+..+-++.. .++-.++.| + .+........+..+++++............+..-.+
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~----~--~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~ 345 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK----R--LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG 345 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----h--HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Confidence 466667778888888888888888777 554444322 2 666777777888888887765444444444444556
Q ss_pred cchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHHhh
Q 040453 476 AQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEAKR 527 (547)
Q Consensus 476 ~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~ 527 (547)
.....+-++++.+=+.+..|++++++...-.+++ ++++.+++.+|-.-.+.
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~-~~~~~~~~~i~~~t~~~ 396 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSG-VVSPALYGNIFALTLDD 396 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhh-hhhHHHHHHHHHHHHHh
Confidence 6677788888999999999999999988888888 66778888888665554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.024 Score=62.49 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=88.0
Q ss_pred eeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc----
Q 040453 385 TAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP---- 460 (547)
Q Consensus 385 ~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~---- 460 (547)
....++.++.+.+|.+.........+-.+...+..++.|++|||...|++-.|++.+. ..+..+++.+++.....
T Consensus 22 l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~-g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 22 LQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA-GAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH-HHHHHHHHHHHHHhCchhhhh
Confidence 3456788889999998888888889999999999999999999743333333555433 23333444444332211
Q ss_pred --------------chHHHHHHHHHhhhccchhhHHHHHHHhhcCCch--hhhcchhccchhhHHHHHHHHHHH
Q 040453 461 --------------GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYY--STLYNFGGAASPLGSYLLNVRVAG 518 (547)
Q Consensus 461 --------------~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~--g~nyg~~~~~~~~gs~~l~~~l~G 518 (547)
....++..+..++......-..++++|.+..++- +.-+++......+|+ +++..+.+
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~-ilg~~~g~ 173 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN-VLGYAAGA 173 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0112234456668888888899999999987643 567777766677776 55554444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.011 Score=63.72 Aligned_cols=149 Identities=20% Similarity=0.239 Sum_probs=82.7
Q ss_pred hccHHHHHHHHH---HHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhH
Q 040453 364 LFSLDMLILFFA---TICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPL 439 (547)
Q Consensus 364 l~t~~Fwll~~~---~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~ 439 (547)
.|+++||.+-.. +++.+|. ..+-.+--+++ .|++.++.+...++.++...+...+.|.++||++.|+ ..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi---~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK----~L 76 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGI---FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK----HL 76 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS----HH
T ss_pred ccCchHHHHHHHHHHHHHHHHH---HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH----HH
Confidence 367888855443 3444443 33333444544 8999999999999999999999999999999998663 33
Q ss_pred HHHHHHHHHHHHHHH-HHhhc--cchHHHHH----HHHHhhhccchhhHHHHHHHhhcCCchhhhcchh----ccchhhH
Q 040453 440 MLTIILLLSCIGHLL-IAFNV--PGGLYVAS----IIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG----GAASPLG 508 (547)
Q Consensus 440 ~l~~~~~~~~i~~ll-l~~~~--~~~l~~~~----~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~----~~~~~~g 508 (547)
...+..++...+-++ +...+ ...++++. +.+|+.+.+..++.=+++-|.= |.++-.||=. .++.+++
T Consensus 77 l~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~ 154 (412)
T PF01306_consen 77 LWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIA 154 (412)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHH
Confidence 333333332223222 22221 12333333 4456666666666655543331 4455555544 4555554
Q ss_pred HHHHHHHHHHHHhHHHHh
Q 040453 509 SYLLNVRVAGHLYDKEAK 526 (547)
Q Consensus 509 s~~l~~~l~G~~yd~~~~ 526 (547)
+ .+.|.+++.+..
T Consensus 155 s-----~~~G~L~~i~p~ 167 (412)
T PF01306_consen 155 S-----LLAGILFNINPN 167 (412)
T ss_dssp H-----HHHHHHHHHHHH
T ss_pred H-----HHhheeeeeCcc
Confidence 4 467777765543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.078 Score=57.31 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=50.3
Q ss_pred hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC------
Q 040453 88 GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP------ 161 (547)
Q Consensus 88 gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP------ 161 (547)
.++++.+.||+|+|....++.+...++...+++. +..+.+.+....++.+.+.+......-.-..+-.+
T Consensus 281 ~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~ 355 (444)
T PRK09669 281 ALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-----PPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRS 355 (444)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 4678899999999999888877655443333221 11234434444444555544332221111112222
Q ss_pred --CCCcchhhhh----HhhhhhhHHHHHHHHHH
Q 040453 162 --ESRGVVLGIL----KGYVGLSGAIITQLYRA 188 (547)
Q Consensus 162 --~~RG~v~Gi~----~a~~GLSa~I~s~i~~~ 188 (547)
+..|...++. |-..++++.+...+...
T Consensus 356 G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 356 GRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124455542 66667777666665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.071 Score=58.36 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=49.7
Q ss_pred chHHHHHHhhhcc-HHHHHHHHH-HHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCc
Q 040453 24 NMKSLAIQVITGR-WFMVFASFL-IMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPP 100 (547)
Q Consensus 24 ~~~~~~~~~~~~R-w~~l~a~~~-v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp 100 (547)
+.++..+...+|| |+.++...+ .+++......+..| .-+...-+..+...+.....+... ..++.+.+.||+|+
T Consensus 219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y---~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk 295 (473)
T PRK10429 219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIY---YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSR 295 (473)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheee---EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3456666666776 444444333 33333332222222 111111123333333333323333 35788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040453 101 WVVLVLGAVLNFFGYFMIW 119 (547)
Q Consensus 101 ~~~l~iG~vl~~~Gy~l~~ 119 (547)
|.++.++.++..++...++
T Consensus 296 k~~~~~~~~~~~~~~~~~~ 314 (473)
T PRK10429 296 RILWAGASIFPVLSCGVLL 314 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888887776765543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=48.81 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=42.2
Q ss_pred hCCChhhhHHH-HHHHHhhhhhhchhhhhhccC-CcHHHHHHHHHHHHHHHHHHHH
Q 040453 67 LGYDQTTLNLL-SFFKDLGANVGILSGLINEIT-PPWVVLVLGAVLNFFGYFMIWL 120 (547)
Q Consensus 67 ~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~-Gp~~~l~iG~vl~~~Gy~l~~l 120 (547)
+|+||++...+ ++.+..-=...+++|++.||+ |.|.++.+|+++..+|++++..
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~ 111 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI 111 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc
Confidence 66999987765 443332222478999999997 9999999999999999988743
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=64.05 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=68.9
Q ss_pred CcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhh----cc-c-hHHHHH--HHHHh
Q 040453 401 KKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFN----VP-G-GLYVAS--IIIGF 472 (547)
Q Consensus 401 ~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~----~~-~-~l~~~~--~liG~ 472 (547)
+...+..=.+-.+.|.+|++++||+.|+++||+..... +++++++....... .+ . +..+.. .++|+
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~------liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi 156 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE------LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGI 156 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH------HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhc
Confidence 33445555778899999999999999999988654432 33333333322221 12 1 223333 79999
Q ss_pred hhccchhhHHHHHHHhhcCCchhhhcchhccchhhH
Q 040453 473 CFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLG 508 (547)
Q Consensus 473 ~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~g 508 (547)
+.|+.+.+-.+++||+=-.|.=|+.-++++.....|
T Consensus 157 GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 157 GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred cccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 999999999999999987777777666665554444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.041 Score=60.38 Aligned_cols=133 Identities=12% Similarity=0.031 Sum_probs=88.8
Q ss_pred HhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 040453 48 AAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKK- 125 (547)
Q Consensus 48 l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~- 125 (547)
...+..+.+-.+.+ +.+|++..+..++.....++... ....+++.+|++.|.++.++.++..+++.......+..
T Consensus 267 ~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 267 NLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred hcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 33444433333444 35899999988864444455543 67888888999999999999999988875542222111
Q ss_pred ----ccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHH
Q 040453 126 ----IARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQL 185 (547)
Q Consensus 126 ----i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i 185 (547)
++ ..+.+.....+.+.+.++..++.++..++.=|+ ++|+.-|+..++..++..+-+.+
T Consensus 344 ~~~gi~--~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~ 406 (468)
T TIGR00788 344 LAFGIS--DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL 406 (468)
T ss_pred cccCCC--CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence 11 122222334455556667777888888888875 68999999999999997776653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.087 Score=57.38 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=79.0
Q ss_pred cccHHHHHHhCCChhhhHHHHHHHHhhhhhhchhhhhhccCC-----cHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Q 040453 58 LYSGDIKYALGYDQTTLNLLSFFKDLGANVGILSGLINEITP-----PWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVW 132 (547)
Q Consensus 58 iys~~L~~~~~~sqs~l~~is~~~~vG~~~gi~~G~l~D~~G-----p~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~ 132 (547)
.-.+-+|+++|++.+|++.+.....+--.+-++.|++.|.++ +|+-+++|+++..+++..+.+ ..+.. .+..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~-~~~~~--~s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL-LPASE--SSAA 87 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh-ccccc--chhh
Confidence 345669999999999999998877777778999999999986 788888999998776655433 33322 2333
Q ss_pred HHHHHHHHhhcccccccchh---hhhhhhcCCCCCcchhhhh
Q 040453 133 HMCLYICVGANSQSFANTGS---LVTCVKNFPESRGVVLGIL 171 (547)
Q Consensus 133 ~l~~~~~lgg~g~~~~~ta~---l~t~~~nFP~~RG~v~Gi~ 171 (547)
...++..+...|..+.|.++ ++-.++.-|.+||......
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~ 129 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFV 129 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH
Confidence 34445566666777766644 4556788888877655544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.056 Score=59.70 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=81.8
Q ss_pred cchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhh
Q 040453 402 KSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPL 480 (547)
Q Consensus 402 ~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~ 480 (547)
....+..+++-++..+|-+++|++||+++|| .++....++.++..+..++... ..+.+.=.+.|++.++.+.+
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk------~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRK------PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccH------HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 4456677899999999999999999987754 4666667777777766666654 34455669999999999999
Q ss_pred HHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 481 VFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 481 ~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
...+++|+++.|+=+..=.+ ....-.++ .+.+.+.+.+..
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~-~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGG-LMLPAGAAYITR 231 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHH-HHHHHHHHHHHh
Confidence 99999999999988776555 33333333 223444554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.11 Score=57.60 Aligned_cols=123 Identities=19% Similarity=0.272 Sum_probs=87.9
Q ss_pred hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHhh
Q 040453 395 GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLS-CIGHLLIAFNVPGGLYVASIIIGFC 473 (547)
Q Consensus 395 ~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~-~i~~lll~~~~~~~l~~~~~liG~~ 473 (547)
++++....+-+...+++.+.-.+|.+.+|++.||+. -+..+....++- +.+.+-........+...=++.|+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~------ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP------LSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF 147 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC------hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555556788999999999999999999999653 122222211111 1111111111123344445899999
Q ss_pred hccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 474 FGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 474 ~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
-++.|..+.++++.+|+.++.|...|+.+.+..+|+ +++.+++..++..+
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~-i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN-IFGGLIAYGVFKLN 197 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh-HHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999998 77788888777644
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.19 Score=55.95 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhhchheeecchh----hhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 370 LILFFATICGVGGTLTAIDNLG----QIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 370 wll~~~~~~~~g~Gl~~i~n~~----~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
|...++.++.....-.+++..+ .+.++.+.+.+++++..++..-...+.-.+.+.+.||++.| .+..+..
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R------~v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR------TVMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch------HHHHHHH
Confidence 4444444444444444444444 33445666677777777777766666666777788877643 3456667
Q ss_pred HHHHHHHHHHHhhcc-chHHHH-HHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 446 LLSCIGHLLIAFNVP-GGLYVA-SIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 446 ~~~~i~~lll~~~~~-~~l~~~-~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
++..+++++..+... ..+++. .++.|++.|..+.-...++..||- |+=+.-=|+...+.++|.+++.+ +--.+.|.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~-l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPP-LLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHH-HHHHHHHH
Confidence 777888888777654 345554 689999999999999999999995 77888888889999999988754 67777777
Q ss_pred HHhhc
Q 040453 524 EAKRQ 528 (547)
Q Consensus 524 ~~~~~ 528 (547)
..-|+
T Consensus 197 ~G~r~ 201 (509)
T KOG2504|consen 197 YGWRG 201 (509)
T ss_pred hCcHH
Confidence 65554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.1 Score=55.05 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=62.5
Q ss_pred hccccccccccHHHHHHhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 040453 50 AGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIAR 128 (547)
Q Consensus 50 ~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~ 128 (547)
.-.+|.|.+| ++||++..|+..+-.++.+-+ .+|.+.|.+.||+|+|..+++-+++..+..+ ..+.+
T Consensus 52 LQGpY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl------~k~~~- 119 (354)
T PF05631_consen 52 LQGPYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL------TKHSS- 119 (354)
T ss_pred hhcchhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH------HHhcc-
Confidence 3357999888 469999999999877766666 4799999999999999999999999877743 33333
Q ss_pred chHHHHHHHHHHhhcccccc
Q 040453 129 PQVWHMCLYICVGANSQSFA 148 (547)
Q Consensus 129 ~~~~~l~~~~~lgg~g~~~~ 148 (547)
.++.+.+=-+++|++.+..
T Consensus 120 -~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 120 -NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred -ccHHHHHHHHHHHHHHHHH
Confidence 3444433335666555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=55.41 Aligned_cols=111 Identities=24% Similarity=0.295 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHhhhccchhhHH
Q 040453 404 ISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVAS-IIIGFCFGAQWPLVF 482 (547)
Q Consensus 404 a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~-~liG~~~G~~~~~~p 482 (547)
+...=|.+++..++.-..+|-+||+.+|| + ++.+..+..++..++++....-..++.+ .+.|+. =+..++.-
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----p-vll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~-kgnl~v~r 142 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-----P-VLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF-KGNLSVIR 142 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCch-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHHHH
Confidence 34555899999999999999999998864 3 3344444455566666554433344443 455554 45679999
Q ss_pred HHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhH
Q 040453 483 AIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYD 522 (547)
Q Consensus 483 ~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd 522 (547)
++++|.+-.||-+.-.+.+.++..+|- +++|.+.|++-+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGf-ilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGF-ILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcch-hhcchhhhHHHh
Confidence 999999999999999999988888885 778877777655
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.014 Score=65.36 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHhhccccccccccHHHHHHhCCChhhhHHHHHHHHhhhhh-hchhhhhhccCC-cHHHHHHHHHHHHHHHHHH
Q 040453 42 ASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGANV-GILSGLINEITP-PWVVLVLGAVLNFFGYFMI 118 (547)
Q Consensus 42 a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~~-gi~~G~l~D~~G-p~~~l~iG~vl~~~Gy~l~ 118 (547)
...++| ..-..|.-++-+ .+++||+++.+|.-.|..+-|++..+ .++-.++-+|.. ||++ .+|+++.++|.+++
T Consensus 10 ~~~~~q-~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwi-g~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 10 LLGLFQ-MMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWI-GIGALLMGLGSLLF 85 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee-eecHHHHHHHHHHH
Confidence 334445 444456666655 89999999999999999999999864 566666666643 4444 48999999998876
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.78 Score=44.11 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=75.2
Q ss_pred chhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhccchh
Q 040453 403 SISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP---GGLYVASIIIGFCFGAQWP 479 (547)
Q Consensus 403 ~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~---~~l~~~~~liG~~~G~~~~ 479 (547)
......+...+...++.+..|.++|+.+|| +.... ......++.++...... ..+.+...+.|++.|....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRR----KVLII--GLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccch----HHHHH--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH
Confidence 467788899999999999999999988654 22222 22212233222222221 2334455568999999999
Q ss_pred hHHHHHHHhhcC-Cchhhhcchhccc-hhhHHHHHHHHHHHHHhHH
Q 040453 480 LVFAIISELFGL-KYYSTLYNFGGAA-SPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 480 ~~p~l~s~~FG~-k~~g~nyg~~~~~-~~~gs~~l~~~l~G~~yd~ 523 (547)
...++++|.+.. ++.+..++..... ..++. ++++.+.+.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGL-ALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999986 5777777777663 44554 5566666666655
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.4 Score=50.88 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhchheeecchhhhh----hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHH
Q 040453 370 LILFFATICGVGGTLTAIDNLGQIG----GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIIL 445 (547)
Q Consensus 370 wll~~~~~~~~g~Gl~~i~n~~~I~----~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~ 445 (547)
|++....++...--=..+..++|++ ++.|.+.++++.+-++=-++-.+--++...+.- |+...| .+....
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar----~~g~er--~l~~~L 84 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR----RFGEER--SLFLAL 84 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHH--HHHHHH
Confidence 5555555554333223334444443 356777777766666655555544445554444 444445 455666
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 446 LLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 446 ~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
++.+++.++=.......++.++.++|.+.+..-.+.|+++.|.|+ |+-+..=|+-.++
T Consensus 85 lli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~s 142 (395)
T COG2807 85 LLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTS 142 (395)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHH
Confidence 777777766555444568889999999999999999999999997 7777766664333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.9 Score=47.08 Aligned_cols=30 Identities=7% Similarity=-0.069 Sum_probs=21.4
Q ss_pred hchhhhhhccCCcHHHHHHHHHHHHHHHHH
Q 040453 88 GILSGLINEITPPWVVLVLGAVLNFFGYFM 117 (547)
Q Consensus 88 gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l 117 (547)
.++++.+.||++.|.+...+.++..+...+
T Consensus 280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~ 309 (460)
T PRK11462 280 SALAKPLTDWKCKVTIFWWTNALLAVISLA 309 (460)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 578999999999998876555544443333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=6.1 Score=43.77 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=97.5
Q ss_pred hhhccHHHHHHHHHHHHhhcccc---ccccccHHHHH-HhCCChhhhHHHHHHHHhhh-hhhchhhhhhccCCc-HHHHH
Q 040453 32 VITGRWFMVFASFLIMAAAGATY---MFSLYSGDIKY-ALGYDQTTLNLLSFFKDLGA-NVGILSGLINEITPP-WVVLV 105 (547)
Q Consensus 32 ~~~~Rw~~l~a~~~v~l~~Gt~Y---~fSiys~~L~~-~~~~sqs~l~~is~~~~vG~-~~gi~~G~l~D~~Gp-~~~l~ 105 (547)
-.+.+|+.+....+.++..+..+ .=|.| |-+++ ..+-+....-++..+..+|. ++.+..|.-..|.+. |.+++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~w-pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMW-PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecc-hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 45778998888888877776642 22222 33332 24444444555444455665 468899999999874 67777
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhh--hhhcCCCCCcchhhhhHhhhhhhHHHHH
Q 040453 106 LGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVT--CVKNFPESRGVVLGILKGYVGLSGAIIT 183 (547)
Q Consensus 106 iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t--~~~nFP~~RG~v~Gi~~a~~GLSa~I~s 183 (547)
.|.+...+|-.+ +++++.+-++ ..|+|.+--.+.|+| ..+.+.+.+ +.+..+++|-++.+.....+-+ |.++.
T Consensus 107 ~s~ii~~~g~ll-Y~~l~~~~~~-~~y~mL~~R~l~Gvg--~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl-g~ilG 181 (488)
T KOG2325|consen 107 VSFLIAIIGNLL-YLALAYVPNG-VKYLMLVARILTGVG--VGNFAVLRAYIADASTVEDRPRAFAATSGGFVL-GIILG 181 (488)
T ss_pred HHHHHHHHHHHH-HHHHHhcccc-hHHHHHHHHHHcCcC--cccHHHHHHHHHhccCccchHHHHHHhhhHHHH-HHHHh
Confidence 999999999765 4455555432 445444434445555 445577777 4467998888877776554433 45777
Q ss_pred HHHHHHhCC
Q 040453 184 QLYRAFYGD 192 (547)
Q Consensus 184 ~i~~~~f~~ 192 (547)
.....+|.+
T Consensus 182 p~~q~~f~~ 190 (488)
T KOG2325|consen 182 PTIQLAFTP 190 (488)
T ss_pred HHHHHHHhh
Confidence 777777753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.36 Score=51.84 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=95.5
Q ss_pred CCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccch
Q 040453 400 PKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQW 478 (547)
Q Consensus 400 ~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~ 478 (547)
...+.+++.+...+.+.+--.+.|.+.||++.| .-+.+.+.++..+..+++++.. ..++++=.|=|++....+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccc------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 445678888999999999999999999988743 3446666777777778877663 567778899999999999
Q ss_pred hhHHHHHHHhhcCCch-hhhcchhccchhhHHHHHHHHHHHHHhHHHHhhc
Q 040453 479 PLVFAIISELFGLKYY-STLYNFGGAASPLGSYLLNVRVAGHLYDKEAKRQ 528 (547)
Q Consensus 479 ~~~p~l~s~~FG~k~~-g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~~~~ 528 (547)
..--++.+|.|..++= |+--|+......+|. +.+|+..|.+||--.++-
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~-lvgPpfGGilYe~~Gk~a 227 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGV-LVGPPFGGILYEFAGKSA 227 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccc-eecCCcccchHhhcCCcC
Confidence 9999999999986553 776777666666665 667778899999876643
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.1 Score=51.70 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=85.2
Q ss_pred hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-c--------chHHHH
Q 040453 396 SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV-P--------GGLYVA 466 (547)
Q Consensus 396 a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~-~--------~~l~~~ 466 (547)
.++.++.+++..+..+.-...+--++.|++.|++..| .+.+.+..++..+++.++.... + ...+++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-----~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-----FKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 4777777788888888888889999999999987543 3455666677778887765532 1 125567
Q ss_pred HHHHHhhhccchhhHHHHHHHhhcCCc---hhhhcchhccchhhHHHHHHHHHHHHH
Q 040453 467 SIIIGFCFGAQWPLVFAIISELFGLKY---YSTLYNFGGAASPLGSYLLNVRVAGHL 520 (547)
Q Consensus 467 ~~liG~~~G~~~~~~p~l~s~~FG~k~---~g~nyg~~~~~~~~gs~~l~~~l~G~~ 520 (547)
.+++.++.|+.-+-+.++..|-|..++ +-+-|.+.+.+.-+|+ ++++.+.+.+
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l 147 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGS-LISTIITPIL 147 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 889999999999999999999997542 4455666555555665 3444444444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.63 Score=51.30 Aligned_cols=147 Identities=24% Similarity=0.371 Sum_probs=92.8
Q ss_pred hhccHHHHHHHHHHHHhh-c-cc-cccccccHHHHHHhCCChhhhHHH-HHHHHhhhhhhchh-hhhhccCCcHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAA-G-AT-YMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGANVGILS-GLINEITPPWVVLVLG 107 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~-G-t~-Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~-G~l~D~~Gp~~~l~iG 107 (547)
.++.+.....++++-+-- | .. .. -.| +|.+++|++++.+.+ ++...++....++. ..+.-.+|-+.++.+|
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~-~~y---l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lG 314 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVL-LLY---LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLG 314 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEE-EEE---EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHH
Confidence 344566555555554322 2 22 22 233 788999999999964 55555555444433 4677777888888999
Q ss_pred HHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhh-cCCCCCcchhhhhHhhhhhhHHHHHHHH
Q 040453 108 AVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVK-NFPESRGVVLGILKGYVGLSGAIITQLY 186 (547)
Q Consensus 108 ~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~-nFP~~RG~v~Gi~~a~~GLSa~I~s~i~ 186 (547)
.....++++++... ...|++.....+.+.+. ...++.-....+ ..||+||++-++....-+|++.+.+.+|
T Consensus 315 l~~~~~~~~~~af~-------~~~w~~~~~~v~~~~~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 315 LLSEFLQLLLFAFA-------TETWMMFAAGVVVALAG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHHHHHHHHHHHHh-------ccchhhhHHHHHHHhhc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 99999987765432 23466665555554443 233333333333 3589999999999888888887777777
Q ss_pred HHHhC
Q 040453 187 RAFYG 191 (547)
Q Consensus 187 ~~~f~ 191 (547)
...|.
T Consensus 387 ~~i~~ 391 (463)
T KOG2816|consen 387 GNIFA 391 (463)
T ss_pred HHHHH
Confidence 76544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.021 Score=61.38 Aligned_cols=102 Identities=28% Similarity=0.276 Sum_probs=79.8
Q ss_pred cchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHhhhccc
Q 040453 402 KSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV----PGGLYVASIIIGFCFGAQ 477 (547)
Q Consensus 402 ~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~----~~~l~~~~~liG~~~G~~ 477 (547)
...+...+...++..+|-++.|+++||++||+ .+.+..++.+++.++....+ ...+.++-++.|++.|+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKP------ALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 44567788899999999999999999998763 44455566666666655554 244566779999999999
Q ss_pred hhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 478 WPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 478 ~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
..+.|.++.|.=..|+=|+.-.+..++..+|.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~ 151 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGI 151 (451)
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999998888887777777666664
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.6 Score=41.89 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred ccHHHHHHhCCCh--hhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Q 040453 59 YSGDIKYALGYDQ--TTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMC 135 (547)
Q Consensus 59 ys~~L~~~~~~sq--s~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~ 135 (547)
..+.+.+.++.+. .+...+.....++... .++.|.+.||+|+|....++......+..+..+. .. ...+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~ 98 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--PN---VGLALLL 98 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--cc---chHHHHH
Confidence 3444445555554 3445544444455544 4899999999999977777766544443322221 11 2344444
Q ss_pred HHHHHhhcccccccchhhhhhhhcCCC--CCcchhhhhHhh
Q 040453 136 LYICVGANSQSFANTGSLVTCVKNFPE--SRGVVLGILKGY 174 (547)
Q Consensus 136 ~~~~lgg~g~~~~~ta~l~t~~~nFP~--~RG~v~Gi~~a~ 174 (547)
......|.+.+..+.+......+++|+ +|+...++....
T Consensus 99 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 99 ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG 139 (338)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 444445566666666777778888996 778777776553
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.59 Score=51.57 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=92.2
Q ss_pred cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc--c-chHHHHHHHHHhh
Q 040453 397 LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNV--P-GGLYVASIIIGFC 473 (547)
Q Consensus 397 ~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~--~-~~l~~~~~liG~~ 473 (547)
...+..+.+...+.+.++..++.+-.|++.||++.| .++....++.+++.++.-... . ..+.+.=++-|++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r------~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR------RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG 141 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence 455667788889999999999999999999988754 244445555555555543222 1 2344456999999
Q ss_pred hccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 474 FGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 474 ~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
+|..+..+..+++++.-.++-++-.++++.+.-+|+ +++.++.|.+-+.
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~-v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT-IITMPVSGLLCES 190 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHhcc
Confidence 999999999999999999999999999999888888 5566678877654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.7 Score=45.21 Aligned_cols=153 Identities=16% Similarity=0.317 Sum_probs=106.7
Q ss_pred HhhhccHHHHHHHHHHHHhhccccccccccHHHHHH--hCCChhhhHHH-HHHHHhhhhh-hchhhhhhcc---CCcHHH
Q 040453 31 QVITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYA--LGYDQTTLNLL-SFFKDLGANV-GILSGLINEI---TPPWVV 103 (547)
Q Consensus 31 ~~~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~--~~~sqs~l~~i-s~~~~vG~~~-gi~~G~l~D~---~Gp~~~ 103 (547)
+..++++..++.=.+.-...-+.|-.++|-..+... .+.+...+..+ ++..-+|... |++.+.+-+| +|.+++
T Consensus 235 ~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~ 314 (461)
T KOG3098|consen 235 KLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT 314 (461)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc
Confidence 344556666555555555566678889998888754 34444444333 4444455543 6767776655 699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-----------CchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchhhhhH
Q 040453 104 LVLGAVLNFFGYFMIWLAVTKKIA-----------RPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILK 172 (547)
Q Consensus 104 l~iG~vl~~~Gy~l~~l~~~g~i~-----------~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~Gi~~ 172 (547)
+.+|.+++..++.+..+.+-...+ .+++........+.|.+-+..++...+.+..-+||+|-.+-.+.|
T Consensus 315 ~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~k 394 (461)
T KOG3098|consen 315 VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFK 394 (461)
T ss_pred hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 999999999999988776654442 012222334556678899999999999999999999999999999
Q ss_pred hhhhhhHHHHH
Q 040453 173 GYVGLSGAIIT 183 (547)
Q Consensus 173 a~~GLSa~I~s 183 (547)
-+.++.+.+..
T Consensus 395 fyq~~~s~v~~ 405 (461)
T KOG3098|consen 395 FYQSVASCVAF 405 (461)
T ss_pred HHHHHHHHHHh
Confidence 99888875543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.6 Score=48.51 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhccC-CcHHHHHHHHHHHHHHHHHHHH
Q 040453 62 DIKYALGYDQTTLNLL-SFFKDLGANVGILSGLINEIT-PPWVVLVLGAVLNFFGYFMIWL 120 (547)
Q Consensus 62 ~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~-Gp~~~l~iG~vl~~~Gy~l~~l 120 (547)
-+.+.+|+++++.+.+ ..+..+.-.+++++|.+.|++ |++.++++++++..+|+.++.+
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3667799999987775 554444445799999999996 9999999999999999988754
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.4 Score=45.65 Aligned_cols=145 Identities=19% Similarity=0.138 Sum_probs=78.9
Q ss_pred hhccHHHHHHHHHHHHhhccccccccccHHHHHHhCCChhhhHHH-HHHHHhhhhhhchhhhhhccCCcHHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALGYDQTTLNLL-SFFKDLGANVGILSGLINEITPPWVVLVLGAVLN 111 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~~sqs~l~~i-s~~~~vG~~~gi~~G~l~D~~Gp~~~l~iG~vl~ 111 (547)
...-|...+.++.--..-=--|+ +=.--.++|+|+|..+.++| ++.-.+-.-.....|.+.||+|.++.....+...
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~--lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFIT--LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 34457666655543332111111 11123678999998888776 6555555556889999999999988776665555
Q ss_pred HHH-HHHHHHHHhccccCchHHHHHHHHHHhhcccccccchh-hhhhhh-cCCCC-CcchhhhhHhhhhhhHHHHHHHHH
Q 040453 112 FFG-YFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGS-LVTCVK-NFPES-RGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 112 ~~G-y~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~-l~t~~~-nFP~~-RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
.++ =.+ +.++-. .|+..+++. |++ +...|| +=-|+. -=|++ -|++-|...+.--|+=++.+ |..
T Consensus 341 tl~~H~~--l~Ft~l---sPy~~m~~l----GLs--ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~-Iia 408 (459)
T KOG4686|consen 341 TLLGHSG--LFFTFL---SPYTSMTFL----GLS--YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP-IIA 408 (459)
T ss_pred HHHHhhh--HHhhhc---cHHHHHHHH----hhh--HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh-hhh
Confidence 444 222 223211 233333322 222 211222 222222 23875 69999998888777655544 444
Q ss_pred HHhC
Q 040453 188 AFYG 191 (547)
Q Consensus 188 ~~f~ 191 (547)
++..
T Consensus 409 g~i~ 412 (459)
T KOG4686|consen 409 GFIA 412 (459)
T ss_pred heee
Confidence 4443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.52 Score=38.75 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=40.2
Q ss_pred eecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhh
Q 040453 386 AIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAK 432 (547)
Q Consensus 386 ~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r 432 (547)
+..-.+-..+++|+++.+.+...++.-+...++..++|++.||..|+
T Consensus 19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 33445556778999999999999999999999999999999998765
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.41 Score=52.23 Aligned_cols=114 Identities=11% Similarity=0.187 Sum_probs=81.6
Q ss_pred hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHH
Q 040453 390 LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASI 468 (547)
Q Consensus 390 ~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~ 468 (547)
...+.+..+.++....++-..+.+.-.+.-.++|++.||.- |.+++.+...+-.++.+.-.+... ..+.+.=.
T Consensus 56 ~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN------R~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~ 129 (493)
T KOG1330|consen 56 LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN------RKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRG 129 (493)
T ss_pred hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC------cceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777888888888888899999999999665 444444444444444433333221 23445668
Q ss_pred HHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHH
Q 040453 469 IIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGS 509 (547)
Q Consensus 469 liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs 509 (547)
++|++-.....+.|++++|.|--..=++-+++.+.+.++|+
T Consensus 130 ~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 130 FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999987777777777777776665
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=85.81 E-value=57 Score=35.40 Aligned_cols=88 Identities=16% Similarity=0.352 Sum_probs=53.9
Q ss_pred chhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCCCCcchh
Q 040453 89 ILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVL 168 (547)
Q Consensus 89 i~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~~RG~v~ 168 (547)
+.+=++.+|++.+.-.++..++...|+++..+. .++|.-.+-.++++.+++++.. ....-++-||+. ++
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------~~v~~~l~Gv~las~ssg~GE~-tfL~lt~~y~~~---~l 145 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------PSVWVRLLGVVLASLSSGLGEV-TFLSLTHFYGKS---SL 145 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------cchhHHHHHHHHHhhhhhhhHH-HHHHHHHhcCcc---cc
Confidence 456678889887766667788888897765321 3455322344577888888764 444457788863 33
Q ss_pred hhhHhhhhhhHHHHHHHHH
Q 040453 169 GILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 169 Gi~~a~~GLSa~I~s~i~~ 187 (547)
+--.++-|.+|.+=+..|.
T Consensus 146 ~~wssGTG~aGl~Ga~~y~ 164 (402)
T PF02487_consen 146 SAWSSGTGGAGLVGALYYL 164 (402)
T ss_pred ccccCCcChhhHHHHHHHH
Confidence 4445555666544444333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.7 Score=46.25 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=54.3
Q ss_pred hCCChhhhHH--HHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhc
Q 040453 67 LGYDQTTLNL--LSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGAN 143 (547)
Q Consensus 67 ~~~sqs~l~~--is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~ 143 (547)
+.+++.++.. .......+... .++.-.+.+|+|+|.+..+|.++..+++.++|+.- ..+++...+..++.+.
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~~ 339 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAGV 339 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHHH
Confidence 4444444333 44444444444 57889999999999999999999999999998762 3455655566677776
Q ss_pred cccccc
Q 040453 144 SQSFAN 149 (547)
Q Consensus 144 g~~~~~ 149 (547)
|.+..+
T Consensus 340 g~~~~~ 345 (467)
T COG2211 340 GTGIAN 345 (467)
T ss_pred Hhhccc
Confidence 666543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=85.35 E-value=6.2 Score=37.00 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHh
Q 040453 409 SLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISEL 488 (547)
Q Consensus 409 sl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~ 488 (547)
++.-...++.-++.+.+.++++.| |.+++..+.-++=...........+++++++.|++.+-.|.--...+.++
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K------~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPK------WSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 333333444445667777877643 34444433333222222222224567899999999999999999888888
Q ss_pred hcCCchhhhcchhc
Q 040453 489 FGLKYYSTLYNFGG 502 (547)
Q Consensus 489 FG~k~~g~nyg~~~ 502 (547)
-=.++-++|.++..
T Consensus 118 s~~~~~~~~~~ifw 131 (156)
T PF05978_consen 118 STEETIGRNTGIFW 131 (156)
T ss_pred CCHHHHhhHHHHHH
Confidence 77777777766643
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=84.82 E-value=6.8 Score=39.61 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=76.9
Q ss_pred HHHHhhhchheeecc--hhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHH
Q 040453 375 ATICGVGGTLTAIDN--LGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGH 452 (547)
Q Consensus 375 ~~~~~~g~Gl~~i~n--~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~ 452 (547)
.+.+...+|..+... ..++-++++++.++.+..-..-.++..+| +..|.+.|+++ -...+.+..+...+|.
T Consensus 8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~g------p~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFG------PWVVLLIGAVLGFVGY 80 (250)
T ss_pred HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcc------hHHHHHHHHHHHHHHH
Confidence 344445666666553 35555668998888888877778888887 88899999664 2234566777777777
Q ss_pred HHHHhh--c--c-chHHHHHHHHHhh-hccchhhHH--HHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHH
Q 040453 453 LLIAFN--V--P-GGLYVASIIIGFC-FGAQWPLVF--AIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 453 lll~~~--~--~-~~l~~~~~liG~~-~G~~~~~~p--~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~ 523 (547)
.++-.. . + ..++...+...++ .|..|--.. ....+.| ++|=|+-=|++-...++++.+++. ++..+|+.
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~-i~~~~f~~ 157 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQ-IYSAFFGD 157 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHH-HHHHHcCC
Confidence 654221 1 1 1222222222221 222332222 2233566 356666666665555565544443 34444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=84.66 E-value=4.3 Score=38.05 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=57.6
Q ss_pred hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCc
Q 040453 87 VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRG 165 (547)
Q Consensus 87 ~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG 165 (547)
..++...+.+++|||+.+++|+++..+= . +++ .. +..|.+..-.++.|.|.+...++--....++-. ++|+
T Consensus 53 s~l~~P~iv~~lg~K~sm~lg~~~y~~y-~---~~~--~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~ 124 (156)
T PF05978_consen 53 SCLFAPSIVNKLGPKWSMILGSLGYAIY-I---ASF--FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIG 124 (156)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHH-H---HHH--Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHh
Confidence 3567788999999999999999885432 1 111 11 234555566777788888887776666666664 4688
Q ss_pred chhhhhHhhhhhh
Q 040453 166 VVLGILKGYVGLS 178 (547)
Q Consensus 166 ~v~Gi~~a~~GLS 178 (547)
+-.|+-.+.+-.|
T Consensus 125 ~~~~ifw~i~~~s 137 (156)
T PF05978_consen 125 RNTGIFWAIFQSS 137 (156)
T ss_pred hHHHHHHHHHHHH
Confidence 8888877776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=83.64 E-value=11 Score=40.74 Aligned_cols=102 Identities=16% Similarity=0.242 Sum_probs=77.3
Q ss_pred HHhCCChhhhHHHHHHHHhhhhhhc-hhhhhhc-cCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhh
Q 040453 65 YALGYDQTTLNLLSFFKDLGANVGI-LSGLINE-ITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGA 142 (547)
Q Consensus 65 ~~~~~sqs~l~~is~~~~vG~~~gi-~~G~l~D-~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg 142 (547)
+-+|+|..|.+.++-.-..|...|+ ..|++.. +.+|+.+..+|+.....++.++ .+.+... +.|.+..-.++-|
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li--i~a~~~~--~~~~~~~~~~l~G 312 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI--ILAGPLG--SPWLFRPGVFLLG 312 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH--HHHHhcc--cchHHHHHHHHHH
Confidence 4589999999999888888887754 7777777 5788888889999988887765 4566654 3555555555667
Q ss_pred cccccccchhhhhhhhcC-CCCCcchhhh
Q 040453 143 NSQSFANTGSLVTCVKNF-PESRGVVLGI 170 (547)
Q Consensus 143 ~g~~~~~ta~l~t~~~nF-P~~RG~v~Gi 170 (547)
+|.|.+..+++...+.-= |++.|+..|.
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~ 341 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGA 341 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHH
Confidence 888888888888888776 4566777765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.15 E-value=55 Score=36.19 Aligned_cols=83 Identities=13% Similarity=0.018 Sum_probs=58.9
Q ss_pred hhhhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-C
Q 040453 85 ANVGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-S 163 (547)
Q Consensus 85 ~~~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~ 163 (547)
....+.++-++|+.+||+.+.+|+.++..=...++. +.-+.+++-.++.|.|.+..+++-=.-..+|..+ +
T Consensus 64 tv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 64 TVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 344788999999999999999999886443332211 1223344556777788887777777777888854 6
Q ss_pred CcchhhhhHhhh
Q 040453 164 RGVVLGILKGYV 175 (547)
Q Consensus 164 RG~v~Gi~~a~~ 175 (547)
+..-+++.-+.+
T Consensus 136 ie~Nisi~Wai~ 147 (461)
T KOG3098|consen 136 IERNISIFWAIG 147 (461)
T ss_pred HHHHHHHHHHHH
Confidence 788888887763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.85 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.84 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.69 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.64 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.51 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.24 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.53 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.45 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.36 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.24 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.14 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.01 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.94 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=199.06 Aligned_cols=378 Identities=15% Similarity=0.056 Sum_probs=244.8
Q ss_pred HhhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHH
Q 040453 31 QVITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGA 108 (547)
Q Consensus 31 ~~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~ 108 (547)
...+.||..+....+..+..+. .+.++.+-+.+.+++ +|..|..++.....++.. ..++.|.+.||+|+|.+++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 3455677777766666666554 478888899999999 999999998777777775 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHH
Q 040453 109 VLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYR 187 (547)
Q Consensus 109 vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~ 187 (547)
++..++..+..+.... . .++|.+.+..++.|.+.+..+.+......++|| ++||.+.|+.....+++..+-..+..
T Consensus 100 ~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776541110 1 234555556667777888888888888999998 57999999988888887655443322
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCc-cchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHH
Q 040453 188 AFYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPN-ELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSA 266 (547)
Q Consensus 188 ~~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~-~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~ 266 (547)
.+.+. .+ .+..|. .. ++..++..+
T Consensus 177 ~l~~~--------------------------------~g~w~~~f~---~~----~~~~~~~~~---------------- 201 (451)
T 1pw4_A 177 LGMAW--------------------------------FNDWHAALY---MP----AFCAILVAL---------------- 201 (451)
T ss_dssp HHHHH--------------------------------TCCSTTCTH---HH----HHHHHHHHH----------------
T ss_pred HHHHH--------------------------------hccHHHHHH---HH----HHHHHHHHH----------------
Confidence 21110 01 111222 10 000000000
Q ss_pred HHHHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcc
Q 040453 267 AIVMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWT 346 (547)
Q Consensus 267 ~~~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 346 (547)
+..+. .+ +++ +..+. .+ .++ .++ + ++. + .+
T Consensus 202 ---~~~~~------~~--------------~~~-~~~~~-~~-----~~~---~~~----~-~~~-------~-~~---- 231 (451)
T 1pw4_A 202 ---FAFAM------MR--------------DTP-QSCGL-PP-----IEE---YKN----D-YPD-------D-YN---- 231 (451)
T ss_dssp ---HHHHH------CC--------------CSS-TTTCC-CS-----CTT---TCC----C-------------------
T ss_pred ---HHHhh------cc--------------CCH-hhcCC-CC-----hhh---hcc----c-ccc-------c-ch----
Confidence 00000 00 000 00000 00 000 000 0 000 0 00
Q ss_pred cCCCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchh
Q 040453 347 TCFSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFV 425 (547)
Q Consensus 347 ~~~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~l 425 (547)
+..+++....+...++.+|++++|.+.+..++.......+......+.++ +|.+..+++...++.++.+.+|++..|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111112335788999999999998887766666677777888877 78888888899999999999999999999
Q ss_pred hhhh--hhhcCCChhHHHHHHHHHHHHHHHHHHhhc--c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcch
Q 040453 426 SEIF--LAKYKFPRPLMLTIILLLSCIGHLLIAFNV--P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNF 500 (547)
Q Consensus 426 sD~l--~~r~~~~r~~~l~~~~~~~~i~~lll~~~~--~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~ 500 (547)
+||+ ++ |........+..+++.+++.... . ..+.+...+.|++++........++.|.+..++.|+.+|+
T Consensus 312 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 386 (451)
T 1pw4_A 312 SDKVFRGN-----RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386 (451)
T ss_dssp HHHTSTTC-----HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHHhcCC-----chhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHH
Confidence 9987 43 22333323333335555444332 1 2344567889999999999999999999999999999999
Q ss_pred hccchhh-HHHHHHHHHHHHHhHH
Q 040453 501 GGAASPL-GSYLLNVRVAGHLYDK 523 (547)
Q Consensus 501 ~~~~~~~-gs~~l~~~l~G~~yd~ 523 (547)
......+ |. .+++.+.|.++|+
T Consensus 387 ~~~~~~~~g~-~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 387 TGLFGYLGGS-VAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 9887777 77 6688899999885
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=189.78 Aligned_cols=383 Identities=13% Similarity=0.147 Sum_probs=248.3
Q ss_pred hhccHHHHHHHHHHHHhhccc-cccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHH
Q 040453 33 ITGRWFMVFASFLIMAAAGAT-YMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVL 110 (547)
Q Consensus 33 ~~~Rw~~l~a~~~v~l~~Gt~-Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl 110 (547)
.+++|..++....+.++.|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.+++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 345566655555555555553 788888999999999999999998777777765 589999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 111 NFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 111 ~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
..++..+.+.. ... .++|.+++..++.|.+.+..+.++.....+++| ++||.+.|+.....+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876432 122 456777777777888888888889888999998 5789999999999888877666544443
Q ss_pred h-CCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 040453 190 Y-GDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAI 268 (547)
Q Consensus 190 f-~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~ 268 (547)
. +..... .... ....+ ++..+.+........ -..|......
T Consensus 177 ~~~~~~~~-------~~~~--------~~~~~----~~~~~~~~~~~~~~w-~~~~~~~~~~------------------ 218 (438)
T 3o7q_A 177 ILSNVPHQ-------SQDV--------LDKMS----PEQLSAYKHSLVLSV-QTPYMIIVAI------------------ 218 (438)
T ss_dssp HHTSSCCC-------CHHH--------HHHSC----HHHHHHHHHHHHHHH-HHHHHHHHHH------------------
T ss_pred Hhcccccc-------cccc--------cccCC----cchhhhhhhhhhhhH-HHHHHHHHHH------------------
Confidence 3 210000 0000 00000 000000000000000 0000000000
Q ss_pred HHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccC
Q 040453 269 VMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTC 348 (547)
Q Consensus 269 ~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (547)
.+ ++...+.. . ..|+ ..++ + + +
T Consensus 219 ~~-~~~~~~~~-~--------------~~p~--~~~~---------~-----~-----~--------------------- 240 (438)
T 3o7q_A 219 VL-LVALLIML-T--------------KFPA--LQSD---------N-----H-----S--------------------- 240 (438)
T ss_dssp HH-HHHHHHHH-C--------------CCCC--CTTT---------C-----C-----C---------------------
T ss_pred HH-HHHHHHHH-H--------------cCCc--cccc---------c-----c-----c---------------------
Confidence 00 00000000 0 0110 0000 0 0 0
Q ss_pred CCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhh-hhhc-CCCCcchhhHHHHHHHHHhhhhhhcchhh
Q 040453 349 FSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQI-GGSL-GYPKKSISTFVSLVSIWNYLGRVVSGFVS 426 (547)
Q Consensus 349 ~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~-g~~~~~a~~~Vsl~si~n~~GRl~~G~ls 426 (547)
++++.....+.++.+|++++|...+..++..+....+.+...++ .++. |.+..+++...++..+.+.+||++.|+++
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 319 (438)
T 3o7q_A 241 -DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_dssp -CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112356889999999999999888887777777888888 7775 88888889999999999999999999999
Q ss_pred hhhhhhcCCChhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 427 EIFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 427 D~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
||+++| ..+.+..++.+++.+++.........+..++.|++++..+....+++.|.+..+ -++.-++...+ .
T Consensus 320 ~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 391 (438)
T 3o7q_A 320 SRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-I 391 (438)
T ss_dssp HHSCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-T
T ss_pred HHhcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-H
Confidence 988654 344455555566665555443333455668999999999999999999999854 56666665543 3
Q ss_pred hHHHHHHHHHHHHHhHHHH
Q 040453 507 LGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~~~ 525 (547)
+|. .+++.+.|.++|+..
T Consensus 392 ~g~-~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 392 IGG-GIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHH-HHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHhc
Confidence 665 668889999999865
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=170.47 Aligned_cols=331 Identities=12% Similarity=0.053 Sum_probs=219.4
Q ss_pred ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Q 040453 53 TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQV 131 (547)
Q Consensus 53 ~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~~ 131 (547)
.+.++.+-|.+++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.++..++..++... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3455566677889999999999998666667664 58999999999999999999999999998776543 345
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhhcCC-CCCcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 040453 132 WHMCLYICVGANSQSFANTGSLVTCVKNFP-ESRGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAAISF 210 (547)
Q Consensus 132 ~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP-~~RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~v~l 210 (547)
|.+....++.|.+.+..+++......+++| ++|+.+.++......++..+-..+...+ .+.
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~----------------- 150 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL-DTM----------------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS-SCH-----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHh-----------------
Confidence 666666677778888888888888899996 6899999999888777765444332221 110
Q ss_pred HhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhchhhhhhHHhhhhhh
Q 040453 211 AFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPLVVVVIEEFKLWKS 290 (547)
Q Consensus 211 i~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~~~~~~~~~~~~~~ 290 (547)
...+..+.+ .++..++. .......
T Consensus 151 ------------------~~~~~~~~~---~~~~~~~~-------------------------~~~~~~~---------- 174 (375)
T 2gfp_A 151 ------------------WNWRACYLF---LLVLCAGV-------------------------TFSMARW---------- 174 (375)
T ss_dssp ------------------HHHHHHHHH---HHHHHHHH-------------------------HCCCCCS----------
T ss_pred ------------------ccHHHHHHH---HHHHHHHH-------------------------HHHHHHH----------
Confidence 001100000 00000000 0000000
Q ss_pred hhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCcHHHhhccHHHH
Q 040453 291 KQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGEDYTILQALFSLDML 370 (547)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~t~~Fw 370 (547)
-|+ ..++ + + + + +++ ..+.++.+|++++|
T Consensus 175 ------~~~--~~~~---------~-----------~--~-----------------~-~~~----~~~~~~~~~~~~~~ 202 (375)
T 2gfp_A 175 ------MPE--TRPV---------D-----------A--P-----------------R-TRL----LTSYKTLFGNSGFN 202 (375)
T ss_dssp ------SCC--CSTT---------T-----------C--C-----------------C-CCT----TTCSTHHHHHHHHH
T ss_pred ------Ccc--cCCC---------C-----------c--c-----------------c-ccH----HHHHHHHhcCcchH
Confidence 010 0000 0 0 0 0 000 11346788999999
Q ss_pred HHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHH
Q 040453 371 ILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSC 449 (547)
Q Consensus 371 ll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~ 449 (547)
.+.+..++.......+......+.++ .|.++.+++...++.++...++++..|+++||.++ |.. .... ....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~~-~~~~-~~~~ 275 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LMW-QSVI-CCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HHH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHH-HHHH
Confidence 99988877766666666667777776 78777778888999999999999999999998753 211 1111 1122
Q ss_pred HHHH--HHHh--h-ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHH
Q 040453 450 IGHL--LIAF--N-VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 450 i~~l--ll~~--~-~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~ 524 (547)
++.. .+.. . ....+++..++.|+++|..+.....++.|.+. ++.|+.+|+......+|. .+++.+.|.++|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS-GVLASLSAMLPQTG 353 (375)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH-HCCSTTCTHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Confidence 2221 1111 1 11234457789999999999999999999998 899999999988888887 56777888888754
Q ss_pred H
Q 040453 525 A 525 (547)
Q Consensus 525 ~ 525 (547)
.
T Consensus 354 ~ 354 (375)
T 2gfp_A 354 Q 354 (375)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-15 Score=156.06 Aligned_cols=383 Identities=12% Similarity=0.052 Sum_probs=211.9
Q ss_pred cccHHHHHH-----hCCChhhhHHHHHHHHhhhh-hhchhhhhhcc-CCcHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 040453 58 LYSGDIKYA-----LGYDQTTLNLLSFFKDLGAN-VGILSGLINEI-TPPWVVLVLGAVLNFFGYFMIWLAVTKKIARPQ 130 (547)
Q Consensus 58 iys~~L~~~-----~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~-~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~~ 130 (547)
...+.++++ +|+|.++..++.....++.. ..+++|.+.|| +|+|.++.+|.++..++..++.+ . .+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~--~~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P--FG 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C--CS
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h--hh
Confidence 344456666 99999999998766667765 47999999999 89999999999999998776532 1 34
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhhcCCC-C--CcchhhhhHhhhhhhHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 040453 131 VWHMCLYICVGANSQSFANTGSLVTCVKNFPE-S--RGVVLGILKGYVGLSGAIITQLYRAFYGDDTKSLILFIGWLPAA 207 (547)
Q Consensus 131 ~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~--RG~v~Gi~~a~~GLSa~I~s~i~~~~f~~~~~~fllfla~~p~~ 207 (547)
.+.+.+..++.|.+.+....+......++||+ + ||.+.++......++..+-..+...+.+...-...+.+.....+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55566666667778888877888888899974 5 66677776666677766555555444332111222222222233
Q ss_pred HHHHhhheeeec--ccccC---Cc-cchhhHH-HHHHH---HHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHhhch
Q 040453 208 ISFAFLRTIRIL--KVIRQ---PN-ELKVFYN-FLYIS---LALAGFLMMIIIVEKQTDFTRSEYGVSAAIVMFLLFFPL 277 (547)
Q Consensus 208 v~li~~~~ir~~--~~~~~---~~-~~~~f~~-~~~~~---~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~~i~ll~~p~ 277 (547)
++++...+.++. +++.+ ++ +.+.... .-..+ ...++.+... ...+..+..+..... .......+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 262 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM-NLVGWNSLPAYINLL----TIVAIAIPV 262 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH-HHHSSCCTTHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH-HhccCcccccchhhh----hHHHHHHHH
Confidence 333333322221 11111 00 0110000 00000 0001111111 111111111100000 000000000
Q ss_pred hhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccCCCCCCCCCC
Q 040453 278 VVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTCFSPPDRGED 357 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (547)
.. ....+ +++ . ..+
T Consensus 263 ~~----~~~~~-------~~~-------------------------------------------------~-~~~----- 276 (491)
T 4aps_A 263 FY----FAWMI-------SSV-------------------------------------------------K-VTS----- 276 (491)
T ss_dssp HH----HHHHC---------------------------------------------------------------------
T ss_pred HH----HHHHh-------hcc-------------------------------------------------c-ccH-----
Confidence 00 00000 000 0 000
Q ss_pred CcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCC
Q 040453 358 YTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFP 436 (547)
Q Consensus 358 ~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~ 436 (547)
.+.-+...+|.+++..++.........+......++ .+.+..+.+...++.++...++.+..|+++||++||.. .
T Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~ 352 (491)
T 4aps_A 277 ---TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-S 352 (491)
T ss_dssp --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-C
Confidence 000122334555544443333333334444445554 45544566777889999999999999999999987643 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchh
Q 040453 437 RPLMLTIILLLSCIGHLLIAFN----------VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASP 506 (547)
Q Consensus 437 r~~~l~~~~~~~~i~~lll~~~----------~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~ 506 (547)
+...+.+..++.+++.+++... ....+.+..++.|++.+........++.|.+..++-|+..|+..+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3344445555666665544331 112345677899999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHhHH
Q 040453 507 LGSYLLNVRVAGHLYDK 523 (547)
Q Consensus 507 ~gs~~l~~~l~G~~yd~ 523 (547)
+|. .+++.+.+.+.|.
T Consensus 433 ~g~-~i~~~~~~~~~~~ 448 (491)
T 4aps_A 433 VGS-ALNAQLVTLYNAK 448 (491)
T ss_dssp HHH-HHHHHHGGGGGGS
T ss_pred HHH-HHHHHHHHHHhcc
Confidence 887 5677777777654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=151.04 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=103.4
Q ss_pred cHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc-C---CCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcC
Q 040453 359 TILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL-G---YPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYK 434 (547)
Q Consensus 359 t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~-g---~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~ 434 (547)
+.++.+|++++|.+++..++....-..+........++. + .+....+...++..+.+.++++..|+++||+++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 356788999999887664433221111112233333332 2 11223355667778899999999999999987542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHH
Q 040453 435 FPRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLL 512 (547)
Q Consensus 435 ~~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l 512 (547)
.+.+..++.+++.+++..... ..+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|. .+
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~ 364 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IF 364 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HH
Confidence 333444555555544443322 23444556678888777777788999999999999999995 66777777 56
Q ss_pred HHHHHHHHhHHH
Q 040453 513 NVRVAGHLYDKE 524 (547)
Q Consensus 513 ~~~l~G~~yd~~ 524 (547)
+|.+.|.++|+.
T Consensus 365 gp~l~G~l~~~~ 376 (417)
T 2cfq_A 365 MSVLAGNMYESI 376 (417)
T ss_dssp HTHHHHTHHHHS
T ss_pred hhhhHHHHHHhc
Confidence 788999999864
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=133.32 Aligned_cols=144 Identities=7% Similarity=-0.058 Sum_probs=98.2
Q ss_pred hhhccHHHHHHHHHHHHhhccccccccccHHHHHHhC------CChhhhHHHHHHHHhhhh-hhchhhhhhccC-CcHHH
Q 040453 32 VITGRWFMVFASFLIMAAAGATYMFSLYSGDIKYALG------YDQTTLNLLSFFKDLGAN-VGILSGLINEIT-PPWVV 103 (547)
Q Consensus 32 ~~~~Rw~~l~a~~~v~l~~Gt~Y~fSiys~~L~~~~~------~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~-Gp~~~ 103 (547)
..++-|..++...+...+.... .+...+.+++++| +|..+...+.....++.. ..+++|.+.||+ |+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3444466555555544433221 2333445778899 999999997666666665 478999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhh---hHhhhhhhH
Q 040453 104 LVLGAVLNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGI---LKGYVGLSG 179 (547)
Q Consensus 104 l~iG~vl~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi---~~a~~GLSa 179 (547)
+.++.++..+++.++.+. + .+.+.+.+..++.|.+.+..+.+......++||+ +||.+.++ ......+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIF-----E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHHHHHHHT-----S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999988766432 1 1455555556666777777777888888899975 68877776 555556655
Q ss_pred HHHH
Q 040453 180 AIIT 183 (547)
Q Consensus 180 ~I~s 183 (547)
.+-.
T Consensus 162 ~~g~ 165 (524)
T 2xut_A 162 FFAS 165 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=123.74 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=86.5
Q ss_pred ccccccc---HHHHHHhCC----Ch----hhhHHHHHHHHhhhhh-hchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHH
Q 040453 54 YMFSLYS---GDIKYALGY----DQ----TTLNLLSFFKDLGANV-GILSGLINEITPPWVVLVLGAVLNFFGYFMIWLA 121 (547)
Q Consensus 54 Y~fSiys---~~L~~~~~~----sq----s~l~~is~~~~vG~~~-gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~ 121 (547)
|..++++ +.+++.++. +. ++..++..+..+|..+ .++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554 455666643 22 2333454555677665 5899999999999999999999998886654321
Q ss_pred Hhccc-----------cCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHH
Q 040453 122 VTKKI-----------ARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAII 182 (547)
Q Consensus 122 ~~g~i-----------~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~ 182 (547)
..+.. -..+++++.+.=++.|.|.+..+..+..-...+.|. +||...++...+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 11100 124567777777778888888877888888899975 68999988776665554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-07 Score=93.79 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHH
Q 040453 365 FSLDMLILFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTII 444 (547)
Q Consensus 365 ~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~ 444 (547)
+.+.++.+++..++....-.++......+.+++ .+..+.+...++..+...++.+.+|+++||++|| .++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHH
Confidence 345555555555554443334445567777788 8888999999999999999999999999988754 355666
Q ss_pred HHHHHHHHHHHHh----hcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHH
Q 040453 445 LLLSCIGHLLIAF----NVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGH 519 (547)
Q Consensus 445 ~~~~~i~~lll~~----~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~ 519 (547)
.++.+++.++... ... ..++++-++.|++.|.......++++|++..|+-++..|+...+..+|. ++++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6677777766655 443 4567788999999999999999999999999999999999988888887 667778877
Q ss_pred HhHHH
Q 040453 520 LYDKE 524 (547)
Q Consensus 520 ~yd~~ 524 (547)
+.+..
T Consensus 178 l~~~~ 182 (451)
T 1pw4_A 178 GMAWF 182 (451)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=94.65 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhhhchheeecchhhhhhh------cCCCCcchhhHHHHHHHHHhhhhhhcchhhhh-hhhhcCCChhH
Q 040453 367 LDMLILFFATICGVGGTLTAIDNLGQIGGS------LGYPKKSISTFVSLVSIWNYLGRVVSGFVSEI-FLAKYKFPRPL 439 (547)
Q Consensus 367 ~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a------~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~-l~~r~~~~r~~ 439 (547)
+.+|.+++..++....-..+.....+..++ +|.+..+.+...++..+...++++.+|+++|| ++|| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence 467888777666555444454555555554 79888889999999999999999999999998 7754 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCc--hhhhcchhccchhhHHHHHHHHH
Q 040453 440 MLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKY--YSTLYNFGGAASPLGSYLLNVRV 516 (547)
Q Consensus 440 ~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~--~g~nyg~~~~~~~~gs~~l~~~l 516 (547)
.+.+..++.+++.++...... ..++++.++.|++.|......+++++|+|..++ -++.+++...+..+|. .+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 556666777777766665543 456677899999999999999999999999877 6677777777777776 567777
Q ss_pred HHHHhHH
Q 040453 517 AGHLYDK 523 (547)
Q Consensus 517 ~G~~yd~ 523 (547)
.|.+.|.
T Consensus 166 ~~~l~~~ 172 (491)
T 4aps_A 166 VGAAQEA 172 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777664
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-07 Score=91.25 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=111.2
Q ss_pred HHHHHHHhhhchheeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHH
Q 040453 372 LFFATICGVGGTLTAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIG 451 (547)
Q Consensus 372 l~~~~~~~~g~Gl~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~ 451 (547)
+++..++....-.++......+.+++|.++.+.+...++..+.+.++++..|+++||++||+. +....++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHH
Confidence 334444333333344455667788899998899999999999999999999999999886532 22344444455
Q ss_pred HHHHHhhc-cchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHhHHHH
Q 040453 452 HLLIAFNV-PGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLYDKEA 525 (547)
Q Consensus 452 ~lll~~~~-~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~yd~~~ 525 (547)
.++....+ ...+++..++.|++.|.......++++|++..|+.++..++......+|. ++++.+.+.+.|...
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc
Confidence 54444333 24466678899999999999999999999999999999999998888887 678888888887643
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=87.48 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=103.3
Q ss_pred chhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHHHHHHHHHHH---Hhhcc-chHH
Q 040453 389 NLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILLLSCIGHLLI---AFNVP-GGLY 464 (547)
Q Consensus 389 n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~~~~i~~lll---~~~~~-~~l~ 464 (547)
-..++.+++|.++.+.+...++..+...++.+.+|+++||++|| ..+.+..++.+++.++. ..... ..++
T Consensus 48 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 35556778999999999999999999999999999999988755 35566666666676655 43333 3456
Q ss_pred HHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 465 VASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 465 ~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
++-++.|++.|.......++++|++..|+-++..|+......+|. ++++.+.+.+.
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~ 177 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 678999999999999999999999999999999999988888887 66777887776
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.14 E-value=6e-06 Score=88.42 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhhhchheeecchhhh-hhhcC------CCCcchhhHHHHHHHHHhhhhhhcchhhhhh-hhhcCCCh
Q 040453 366 SLDMLILFFATICGVGGTLTAIDNLGQI-GGSLG------YPKKSISTFVSLVSIWNYLGRVVSGFVSEIF-LAKYKFPR 437 (547)
Q Consensus 366 t~~Fwll~~~~~~~~g~Gl~~i~n~~~I-~~a~g------~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l-~~r~~~~r 437 (547)
++.+|++++..++...+-.++...+... .+++| .+..+.+...++..+...++.+..|+++||+ +||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 4567777776666544444444555554 44678 8888899999999999999999999999987 654
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc-c-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhh---hcchhccchhhHHHHH
Q 040453 438 PLMLTIILLLSCIGHLLIAFNV-P-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYST---LYNFGGAASPLGSYLL 512 (547)
Q Consensus 438 ~~~l~~~~~~~~i~~lll~~~~-~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~---nyg~~~~~~~~gs~~l 512 (547)
..+.+..++.+++.++..... . ..+++..++.|++.|......+++++|.|..++-++ .|++...+..+|. .+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~ 163 (524)
T 2xut_A 86 -NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FF 163 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HH
Confidence 344555666666666655543 2 345667889999999999999999999999887753 4444555555555 44
Q ss_pred HHHHHHHHhH
Q 040453 513 NVRVAGHLYD 522 (547)
Q Consensus 513 ~~~l~G~~yd 522 (547)
++.+.|.+.|
T Consensus 164 g~~~~~~l~~ 173 (524)
T 2xut_A 164 ASLSMPLLLK 173 (524)
T ss_dssp HHHTSTHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-06 Score=87.33 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred hhccHHHHHHHHHHHHhhhchheeecchhhhhh-hcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHH
Q 040453 363 ALFSLDMLILFFATICGVGGTLTAIDNLGQIGG-SLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLML 441 (547)
Q Consensus 363 ~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~-a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l 441 (547)
.+|+++||.+....++....-.++..-.....+ ++|.++.+.+..+++..+...++++.+|+++||++||+ ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~----~l~~ 78 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK----YLLW 78 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC----HHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHH
Confidence 578999999988766554443344555555455 47999999999999999999999999999999998763 2222
Q ss_pred HHHHHHHHH---HHHHHHhhc--cchHHHHHHHH----HhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHH
Q 040453 442 TIILLLSCI---GHLLIAFNV--PGGLYVASIII----GFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLL 512 (547)
Q Consensus 442 ~~~~~~~~i---~~lll~~~~--~~~l~~~~~li----G~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l 512 (547)
. .++..+ ..+...... ...++....+. |++++....+....+.|. .|+.+..||.......+|. .+
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~-~~ 153 (417)
T 2cfq_A 79 I--ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGW-AL 153 (417)
T ss_dssp H--HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHH-HH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHH-HH
Confidence 1 111111 111111100 01122222333 333444444444444432 2455666666655556655 55
Q ss_pred HHHHHHHHhH
Q 040453 513 NVRVAGHLYD 522 (547)
Q Consensus 513 ~~~l~G~~yd 522 (547)
++.+.|.+.|
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6667777765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.1e-05 Score=78.61 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=90.6
Q ss_pred ccccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 040453 51 GATYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAVLNFFGYFMIWLAVTKKIARP 129 (547)
Q Consensus 51 Gt~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~vl~~~Gy~l~~l~~~g~i~~~ 129 (547)
...+....|.+.+.+..+.+..+....+....+... ..++++++.||+|+|..++.+.....++.+.+........+ .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 369 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-G 369 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-H
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-h
Confidence 345677789999999999888776655444444443 47899999999999999999998888877665544433321 1
Q ss_pred hHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHHH
Q 040453 130 QVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRAF 189 (547)
Q Consensus 130 ~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~~ 189 (547)
....++.+....+.+.++. ...-.-..+-||. .|+++.|+..+..-+++.+.+.+...+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333333332 1223445688996 599999999888778887777665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 547 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.86 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.58 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.49 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.95 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1e-21 Score=202.44 Aligned_cols=382 Identities=14% Similarity=0.081 Sum_probs=235.5
Q ss_pred hhhccHHHHHHHHHHHHhhcc-ccccccccHHHHHHhCCChhhhHHHHHHHHhhhh-hhchhhhhhccCCcHHHHHHHHH
Q 040453 32 VITGRWFMVFASFLIMAAAGA-TYMFSLYSGDIKYALGYDQTTLNLLSFFKDLGAN-VGILSGLINEITPPWVVLVLGAV 109 (547)
Q Consensus 32 ~~~~Rw~~l~a~~~v~l~~Gt-~Y~fSiys~~L~~~~~~sqs~l~~is~~~~vG~~-~gi~~G~l~D~~Gp~~~l~iG~v 109 (547)
..+.||.+++...+...+... ...+++..|.++ ++|+|.+|+.++..+..++.. ..++.|.+.||+|+|.++.+|.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 445689888776655444433 357888888886 489999999998777777765 47999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCchHHHHHHHHHHhhcccccccchhhhhhhhcCCC-CCcchhhhhHhhhhhhHHHHHHHHHH
Q 040453 110 LNFFGYFMIWLAVTKKIARPQVWHMCLYICVGANSQSFANTGSLVTCVKNFPE-SRGVVLGILKGYVGLSGAIITQLYRA 188 (547)
Q Consensus 110 l~~~Gy~l~~l~~~g~i~~~~~~~l~~~~~lgg~g~~~~~ta~l~t~~~nFP~-~RG~v~Gi~~a~~GLSa~I~s~i~~~ 188 (547)
+..++..+....... . .+++.+.+...+.|.+.+..+.++.....++||+ +||.+.|+...+..+++.+-..+...
T Consensus 98 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhhccccchh-h--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 988887765432111 1 2344555666667777778888888899999976 59999999888877776554432221
Q ss_pred HhCCCchHHHHHHHHHHHHHHHHhhheeeecccccCCccchhhHHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 040453 189 FYGDDTKSLILFIGWLPAAISFAFLRTIRILKVIRQPNELKVFYNFLYISLALAGFLMMIIIVEKQTDFTRSEYGVSAAI 268 (547)
Q Consensus 189 ~f~~~~~~fllfla~~p~~v~li~~~~ir~~~~~~~~~~~~~f~~~~~~~~~l~v~l~~~~~~~~~~~~s~~~~~~~~~~ 268 (547)
..... .+.+..|.....+ . ++.
T Consensus 175 ~~~~~-------------------------------~~w~~~~~~~~~~---~----~~~-------------------- 196 (447)
T d1pw4a_ 175 GMAWF-------------------------------NDWHAALYMPAFC---A----ILV-------------------- 196 (447)
T ss_dssp HHHHT-------------------------------CCSTTCTHHHHHH---H----HHH--------------------
T ss_pred Hhhhh-------------------------------hcccccchhhhhh---H----HHH--------------------
Confidence 11100 0011112100000 0 000
Q ss_pred HHHHHhhchhhhhhHHhhhhhhhhhccCCCCcccccCCCCcccCCCCCccccccccccCCcccCCCCCCCCCCCCCcccC
Q 040453 269 VMFLLFFPLVVVVIEEFKLWKSKQMALNNPSVEIITEKPSQEVHSPSSNLEQTVSVAAAPEEVSSGSTSSSKEPSCWTTC 348 (547)
Q Consensus 269 ~i~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (547)
.++.+.. . .+++ +.... ... ++.+++ +.++.+ ++.
T Consensus 197 ~~~~~~~-----~--------------~~~~-~~~~~-~~~-~~~~~~-------------~~~~~~----------~~~ 231 (447)
T d1pw4a_ 197 ALFAFAM-----M--------------RDTP-QSCGL-PPI-EEYKND-------------YPDDYN----------EKA 231 (447)
T ss_dssp HHHHHHH-----C--------------CCSS-TTTCC-CSC-TTTCCC--------------------------------
T ss_pred HHHHHHh-----c--------------ccch-hhccc-chh-hhhhhh-------------cccchh----------hcc
Confidence 0000000 0 0111 00000 000 000000 000000 000
Q ss_pred CCCCCCCCCCcHHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhh-cCCCCcchhhHHHHHHHHHhhhhhhcchhhh
Q 040453 349 FSPPDRGEDYTILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGS-LGYPKKSISTFVSLVSIWNYLGRVVSGFVSE 427 (547)
Q Consensus 349 ~~~~~~~~d~t~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a-~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD 427 (547)
++.....+...++.++++.+|.+....++.......+........++ .+.+..+.+...++..+.+.+|++..|+++|
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (447)
T d1pw4a_ 232 -EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310 (447)
T ss_dssp -----CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 00111123356778899999999988777766665566556665554 5777778889999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccc
Q 040453 428 IFLAKYKFPRPLMLTIILLLSCIGHLLIAFNVP---GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAA 504 (547)
Q Consensus 428 ~l~~r~~~~r~~~l~~~~~~~~i~~lll~~~~~---~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~ 504 (547)
|+.|+. |.........+..++.+++..... ....+..+++|++.++........+.|.+..++.|+-.|++...
T Consensus 311 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 387 (447)
T d1pw4a_ 311 KVFRGN---RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 387 (447)
T ss_dssp HTSTTC---HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred hccccc---cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 987653 222223223333333333222221 22345677889999999999999999999999999999998665
Q ss_pred hhhHHHHHHHHHHHHHhHHH
Q 040453 505 SPLGSYLLNVRVAGHLYDKE 524 (547)
Q Consensus 505 ~~~gs~~l~~~l~G~~yd~~ 524 (547)
..+++.+.++.+.|.+.|+.
T Consensus 388 ~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 388 GYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55544466788899998864
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.7e-14 Score=139.76 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=108.0
Q ss_pred HHHhhccHHHHHHHHHHHHhhhchheeecchhhhhhhc----CCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCC
Q 040453 360 ILQALFSLDMLILFFATICGVGGTLTAIDNLGQIGGSL----GYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKF 435 (547)
Q Consensus 360 ~~q~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~~a~----g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~ 435 (547)
..+..+.+..|.+.+...+................... +.+........++..+....++...|++.||.++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~--- 289 (417)
T d1pv7a_ 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--- 289 (417)
T ss_dssp HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---
T ss_pred cccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---
Confidence 34555666666665554444333322222222222222 22223345666778888899999999999987643
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchh-ccchhhHHHHHH
Q 040453 436 PRPLMLTIILLLSCIGHLLIAFNVP-GGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFG-GAASPLGSYLLN 513 (547)
Q Consensus 436 ~r~~~l~~~~~~~~i~~lll~~~~~-~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~-~~~~~~gs~~l~ 513 (547)
..+.+..++.+++.+++..... ..+++..++.|+++|..+....+++.|.+..++.|+.+|+. .++..+|. .++
T Consensus 290 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~ 365 (417)
T d1pv7a_ 290 ---NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFM 365 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHH-HHH
T ss_pred ---cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHH
Confidence 3555566666666666655443 34556778999999999999999999999999999999975 56667777 667
Q ss_pred HHHHHHHhHHHHh
Q 040453 514 VRVAGHLYDKEAK 526 (547)
Q Consensus 514 ~~l~G~~yd~~~~ 526 (547)
+.+.|.++|+-.-
T Consensus 366 ~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 366 SVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHCH
Confidence 8899999997643
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=4.3e-07 Score=91.48 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhhchh---eeecchhhhhhhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhhcCCChhHHHHHHHH
Q 040453 370 LILFFATICGVGGTL---TAIDNLGQIGGSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAKYKFPRPLMLTIILL 446 (547)
Q Consensus 370 wll~~~~~~~~g~Gl---~~i~n~~~I~~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r~~~~r~~~l~~~~~ 446 (547)
|.+++..+++..... ..++.+.+..++.|.+..+.+...++..+...++.+.+|+++||++|| ..+.+..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~ 97 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHH
Confidence 555554444322221 234455566778999999999999999999999999999999988765 34555555
Q ss_pred HHHHHHHHHHhh-----ccchHHHHHHHHHhhhccchhhHHHHHHHhhcCCchhhhcchhccchhhHHHHHHHHHHHHHh
Q 040453 447 LSCIGHLLIAFN-----VPGGLYVASIIIGFCFGAQWPLVFAIISELFGLKYYSTLYNFGGAASPLGSYLLNVRVAGHLY 521 (547)
Q Consensus 447 ~~~i~~lll~~~-----~~~~l~~~~~liG~~~G~~~~~~p~l~s~~FG~k~~g~nyg~~~~~~~~gs~~l~~~l~G~~y 521 (547)
+.+++.++.... ....+++.-++.|++.|..+.....+++|+|..|+-++..++...+..+|. ++++.+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~~~ 176 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh-hhhhhhhhhHh
Confidence 666665554332 124566778999999999999999999999999999999999988888887 55666666655
Q ss_pred HHH
Q 040453 522 DKE 524 (547)
Q Consensus 522 d~~ 524 (547)
+..
T Consensus 177 ~~~ 179 (447)
T d1pw4a_ 177 AWF 179 (447)
T ss_dssp HHT
T ss_pred hhh
Confidence 543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=9e-06 Score=79.11 Aligned_cols=70 Identities=9% Similarity=-0.057 Sum_probs=54.9
Q ss_pred hhccHHHHHHHHHHHHhhhchheeecchhhhh-hhcCCCCcchhhHHHHHHHHHhhhhhhcchhhhhhhhh
Q 040453 363 ALFSLDMLILFFATICGVGGTLTAIDNLGQIG-GSLGYPKKSISTFVSLVSIWNYLGRVVSGFVSEIFLAK 432 (547)
Q Consensus 363 ~l~t~~Fwll~~~~~~~~g~Gl~~i~n~~~I~-~a~g~~~~~a~~~Vsl~si~n~~GRl~~G~lsD~l~~r 432 (547)
-+|+++||.+.+.+++....--++..-..... ++.|.++.+.+...++..+...++.+.+|+++||++||
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 57999999999876655333223344444434 45799999999999999999999999999999999876
|