Citrus Sinensis ID: 040462
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | 2.2.26 [Sep-21-2011] | |||||||
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.936 | 0.930 | 0.489 | 0.0 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.955 | 0.926 | 0.438 | 1e-150 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.955 | 0.916 | 0.397 | 1e-137 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.885 | 0.829 | 0.395 | 1e-117 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.630 | 0.568 | 0.288 | 4e-29 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.531 | 0.330 | 0.252 | 2e-08 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.531 | 0.330 | 0.252 | 2e-08 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.440 | 0.270 | 0.252 | 2e-08 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.439 | 0.273 | 0.261 | 3e-08 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.440 | 0.278 | 0.252 | 4e-08 |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/709 (48%), Positives = 454/709 (64%), Gaps = 29/709 (4%)
Query: 30 DDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLE 89
D + +YIVY+G + HH+++L++VV + + ++ +Y+RSFNGFA KLT+ E
Sbjct: 29 DGKNIYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEE 88
Query: 90 RQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESE 149
+K+ASME VVSVF + + HTTRSWDF+G ++ R+ VESNI++GV+D+GIWPES
Sbjct: 89 AEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESP 148
Query: 150 SFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTD--------GTARDKDGHGTHT 201
SF DEGF P P KWKG C NF CN K+IGAR Y RD +GHGTHT
Sbjct: 149 SFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHT 208
Query: 202 ASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVD 261
ASTAAG V A+ YG+G GTARGGVP ARIAAYKVC GC+ TDILAA+DDAIADGVD
Sbjct: 209 ASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVD 268
Query: 262 IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAAS 321
II++S+GG P + DAIAIG+FHA+E+GILT NSAGN G N S++PWL+SVAAS
Sbjct: 269 IISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAS 328
Query: 322 TTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFS-SQACNPGCIN 380
T DR FV +V +GNG + G SIN+F + +PLV G+++ + + S S+ C +N
Sbjct: 329 TMDRKFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVN 386
Query: 381 SSLVKGKIVMCSKFDGYTEVHKV--GAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLI 438
+L+KGKIV+C G E K GAAG +L + LP+ + + + +
Sbjct: 387 PNLLKGKIVVCEASFGPHEFFKSLDGAAG-VLMTSNTRDYADSYPLPSSVLDPNDLLATL 445
Query: 439 SYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSP 498
Y S + P A I K+ I + APVV FSSRGPN D++KPDIS PGV+ILAA
Sbjct: 446 RYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPS 505
Query: 499 LAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMN 558
+AP+ +R ++I SGTSM+CPH +A YVK+++P WSP+AI+SA+MTTA PMN
Sbjct: 506 VAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 562
Query: 559 SSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCP 618
+ AE A+GSGHVNP+KAV PGL+Y+ ++ DY+K LC GYN VR I+GD S C
Sbjct: 563 ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACT 622
Query: 619 KGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFF--QKFTI---- 672
G N DLNYPS VS ++ F F R +T+V STYRA Q TI
Sbjct: 623 SG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNP 681
Query: 673 --ISVKVVPEKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVV 719
+S + ++K F +TV G G VV A+LVWSDG+H VRSPI +
Sbjct: 682 NVLSFNGLGDRKSFTLTVRGS---IKGFVVSASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 317/723 (43%), Positives = 441/723 (60%), Gaps = 29/723 (4%)
Query: 25 WAATYDD--RKVYIVYIGSLPKGEYVTSSHHQSILQEV-VEGSSVGDVLVRSYRRSFNGF 81
+A+ D+ + YI+Y+G P T H ++L + + + V SY ++FN F
Sbjct: 26 YASAEDEHAKDFYIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAF 85
Query: 82 AAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVID 141
AAKL+ E +K+ MEEVVSV ++ + HTT+SWDF+GL + R E ++IIGV+D
Sbjct: 86 AAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLD 145
Query: 142 SGIWPESESFSDEGFGPAPKKWKGACNGGKNFT-CNNKLIGARYYTTDGTAR-------- 192
+GI P+SESF D G GP P KWKG+C KNFT CNNK+IGA+Y+ DG
Sbjct: 146 TGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPI 205
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVC-NPSGCASTDILAA 251
D DGHGTHT+ST AG V +AS YG+ GTARG VPSAR+A YKVC SGCA DILA
Sbjct: 206 DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAG 265
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
F+ AI DGV+II++S+GG I D+ D+I++G+FHAM KGILT+ SAGN G + G V +
Sbjct: 266 FEAAIHDGVEIISISIGGPI-ADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNH 324
Query: 312 APWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPE-FS 370
PW+++VAAS DR F K+ LGNG + SG I+ F+ K K +PLV G + +++ + +
Sbjct: 325 EPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYL 384
Query: 371 SQACNPGCINSSLVKGKIVMCSKFDGYTE--VHKVGAAGSILFNDQYEKVSFVVSLPAVA 428
++ C ++ VKGK+++C G E + G AG+I+ +DQY + + PA +
Sbjct: 385 ARYCFSDSLDRKKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATS 444
Query: 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAP 488
V+ + + Y NST+ A I KT + AP VA FSSRGPN +LKPDI+AP
Sbjct: 445 VNSSVGDIIYRYINSTRSASAVIQKTRQVT-IPAPFVASFSSRGPNPGSIRLLKPDIAAP 503
Query: 489 GVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548
G+DILAA + ++ D + K++I SGTSMACPH A VAAYVKSFHPDW+P+AI+S
Sbjct: 504 GIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKS 563
Query: 549 AIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVR 608
AI+T+A P++ DAE A+G G +NP +A +PGL+Y+ Y++ LC GYN + +
Sbjct: 564 AIITSAKPISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLA 623
Query: 609 SISGDNS-TCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVN-FPRIVTNVGLANSTY---- 662
+ G S +C L LNYP++ + AK T+ F R VTNVG +S Y
Sbjct: 624 PLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATV 683
Query: 663 RAKFFQKFTI----ISVKVVPEKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIV 718
RA + T+ +S +K+ F V V K + G +V LVW HSVRSPIV
Sbjct: 684 RAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQM-TPGKIVSGLLVWKSPRHSVRSPIV 742
Query: 719 VHT 721
+++
Sbjct: 743 IYS 745
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 303/763 (39%), Positives = 425/763 (55%), Gaps = 69/763 (9%)
Query: 7 FLLFQCLSFIIFFNMTSLWAATYDDRKVYIVYIG--SLPKGEYVTSSHHQSILQEVVEGS 64
F L CL F + +S D+ YIV++ +P + S+ + S L+ + + +
Sbjct: 11 FFLLLCLGFCHVSSSSS-------DQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSA 63
Query: 65 SVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQ- 123
L+ +Y + +GF+ +LT E L + V+SV P + HTTR+ F+GL++
Sbjct: 64 E----LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEH 119
Query: 124 --SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNK 178
+ + S++++GV+D+G+WPES+S+SDEGFGP P WKG C G NFT CN K
Sbjct: 120 TADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRK 179
Query: 179 LIGARYY-----TTDG---------TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTAR 224
LIGAR++ +T G + RD DGHGTHT+STAAG+ V+ AS G GTAR
Sbjct: 180 LIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTAR 239
Query: 225 GGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGA 284
G P AR+A YKVC GC S+DILAA D AIAD V+++++SLGG + D+ +D +AIGA
Sbjct: 240 GMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYYRDGVAIGA 298
Query: 285 FHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSI 344
F AME+GIL SAGN+G + + +VAPW+ +V A T DR F +LGNG +G S+
Sbjct: 299 FAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSL 358
Query: 345 -NSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMC-----SKFDGYT 398
A+ K P ++ S + + C G + VKGKIVMC ++
Sbjct: 359 FKGEALPDKLLPFIYAGNASNAT---NGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGD 415
Query: 399 EVHKVGAAGSILFN---DQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEI-LKT 454
V G G IL N + E V+ LPA V + + + Y + P A I +
Sbjct: 416 VVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILG 475
Query: 455 EAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKY 514
+ +PVVA FSSRGPN+I P+ILKPD+ APGV+ILAA + A + D RRV++
Sbjct: 476 TVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEF 535
Query: 515 SIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW-------PMNSSKVNDAEV 567
+I SGTSM+CPH + +AA +KS HP+WSP+AIRSA+MTTA+ P+
Sbjct: 536 NIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPST 595
Query: 568 AF--GSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLS 625
F G+GHV+P A NPGLIY+ + +DY+ LC++ Y +RS+S N TC S S
Sbjct: 596 PFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDP-SKSYS 654
Query: 626 AKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP------ 679
DLNYPS A V + + R VT+VG A TY K + T + + V P
Sbjct: 655 VADLNYPSFAVNVDGVGAY--KYTRTVTSVGGAG-TYSVKVTSETTGVKISVEPAVLNFK 711
Query: 680 ---EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVV 719
EKK + VT T SG+ ++ WSDG H V SP+ +
Sbjct: 712 EANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust.
Identities = 279/705 (39%), Positives = 378/705 (53%), Gaps = 62/705 (8%)
Query: 9 LFQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLPKGEYVTS-----SHHQSILQEVVEG 63
F C+ F++F + +S ++ YIV + P E + H S LQE V G
Sbjct: 6 FFLCIIFLLFCSSSS----EILQKQTYIVQLH--PNSETAKTFASKFDWHLSFLQEAVLG 59
Query: 64 SSVGDV-----LVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDF 118
+ L+ SY + GFAA+LT+ E + L EVV+V P LQ TT S+ F
Sbjct: 60 VEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKF 119
Query: 119 MGL----NQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT 174
+GL N + K IIGV+D+G+WPES SF D G P+KWKG C G++F+
Sbjct: 120 LGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFS 179
Query: 175 ---CNNKLIGARYYTTDG-----------------TARDKDGHGTHTASTAAGNEVKDAS 214
CN KLIGAR++ +ARD GHGTHTAST G+ V A+
Sbjct: 180 SSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMAN 239
Query: 215 FYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD 274
G G G ARG P A IA YKVC +GC S+DILAA D AI D VD++++SLGG P+
Sbjct: 240 VLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGG-FPIP 298
Query: 275 FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLG 334
D IAIG F AME+GI + +AGN+G V + APW+ ++ A T DR F V L
Sbjct: 299 LYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLA 358
Query: 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK- 393
NG L G S+ + KG K + + + + S+ C G + ++GK+V+C +
Sbjct: 359 NGKLLYGESL--YPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRG 416
Query: 394 FDGYTE----VHKVGAAGSILFN---DQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKK 446
+G +E V + G IL N +Q E V LPA + L +Y N+T K
Sbjct: 417 VNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVK 476
Query: 447 PEAEIL-KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV-SPLAPIST 504
P+A I+ I AP VA FS+RGP+ P ILKPD+ APGV+I+AA L P
Sbjct: 477 PKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGL 536
Query: 505 DPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTA--WPMNSSKV 562
P D RRV +++ SGTSM+CPH + + A ++S +P+WSP+AI+SA+MTTA + +
Sbjct: 537 -PYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI 595
Query: 563 NDAE-----VAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTC 617
D A G+GHVNP KA+NPGL+Y DYI LC++G+ S + +I+ N +C
Sbjct: 596 KDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSC 655
Query: 618 PKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTY 662
K LNYPS+A R K T R VTNVG NS Y
Sbjct: 656 NGILRKNPGFSLNYPSIAVIFKRGKT-TEMITRRVTNVGSPNSIY 699
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 160/554 (28%), Positives = 256/554 (46%), Gaps = 96/554 (17%)
Query: 72 RSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWD-------------- 117
R Y + F+GF+ KL E KL ++++V +V+P+ T + + D
Sbjct: 104 REYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDD 163
Query: 118 ---FMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT 174
++G N + ++ + I + +ID+G+ E P KK G G +F
Sbjct: 164 SAPYIGANDAWDLGYTGKG-IKVAIIDTGV---------EYNHPDLKKNFGQYK-GYDF- 211
Query: 175 CNNKLIGARYYTTD--GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARI 232
+N T D G A D HGTH A T A N GT +G P A +
Sbjct: 212 VDNDYDPKETPTGDPRGEATD---HGTHVAGTVAAN------------GTIKGVAPDATL 256
Query: 233 AAYKVCNPSGCASTD-ILAAFDDAIADGVDIITVSLGG--NIPVDFIKDAIAIGAFHAME 289
AY+V P G +T+ ++A + A+ DG D++ +SLG N P D+ A + AM
Sbjct: 257 LAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNP-DW---ATSTALDWAMS 312
Query: 290 KGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNG----ATLSGYSIN 345
+G++ + S GNSG N V S +++ T +L +++ + G A + GY+
Sbjct: 313 EGVVAVTSNGNSGPNGWTVGSPGTSREAISVGAT-QLPLNEYAVTFGSYSSAKVMGYNKE 371
Query: 346 S--FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKV 403
A+ K+ LV + E +F + + + +G I K D K
Sbjct: 372 DDVKALNNKEVELVEAG-IGE-AKDFEGKDLTGKV--AVVKRGSIAFVDKAD---NAKKA 424
Query: 404 GAAGSILFNDQYEKVSFVV---SLPAVAVSMENFNSLIS-YKNSTKKPEAEILKTEAIKD 459
GA G +++N+ ++ V S+P + +S+E+ L+S K K ++ ++A+ +
Sbjct: 425 GAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKLTVSKALGE 484
Query: 460 FDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519
VA FSSRGP + ++KPDISAPGV+I++ + + DP+ Y + G
Sbjct: 485 ----QVADFSSRGP-VMDTWMIKPDISAPGVNIVSTIP-----THDPD--HPYGYGSKQG 532
Query: 520 TSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEV----AFGSGH-- 573
TSMA PH A A +K P WS I++AIM TA + S D EV A G+G
Sbjct: 533 TSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDS---DGEVYPHNAQGAGSAR 589
Query: 574 -VNPVKA---VNPG 583
+N +KA V+PG
Sbjct: 590 IMNAIKADSLVSPG 603
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 128/507 (25%), Positives = 204/507 (40%), Gaps = 121/507 (23%)
Query: 104 PSRTLQFHTTRSWDFMGLN-----QSITRKHSVESNIIIGVIDSGIWPESESF------- 151
P++T T LN +++ K + ++ VID+G E++
Sbjct: 90 PAKTADIPATSKETIRDLNDPSHVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKSK 149
Query: 152 ----SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG-TARDKDGHGTHTASTAA 206
S E A KK G G N+K+ Y+ DG TA D++ HGTH + +
Sbjct: 150 ARYQSKEDLEKA-KKDHGITYGE---WVNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILS 204
Query: 207 GN---EVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA--STDILAAFDDAIADGVD 261
GN E K+ Y + G +P A++ +V +G A + + A DA+ G
Sbjct: 205 GNAPSETKEP--YRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAK 257
Query: 262 IITVSLG------GNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGS------------ 303
+I +S G N+P D K A +A KG+ + SAGN S
Sbjct: 258 VINMSFGNAALAYANLP-DETKKAFD----YAKSKGVSIVTSAGNDSSFGGKTRLPLADH 312
Query: 304 -NLGFVYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGK 360
+ G V + A ++VA+ + D+ + ++ + + K+ P++
Sbjct: 313 PDYGVVGTPAAADSTLTVASYSPDKQLTETA-----------TVKTADQQDKEMPVLSTN 361
Query: 361 EVSESCPEFSSQACNPGCINSSL--VKGKIVMCSK-----FDGYTEVHKVGAAGSILFND 413
E + N G VKGKI + + D K GA G +++++
Sbjct: 362 RF-EPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN 420
Query: 414 QYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKD--FDA-PVVAP--- 467
Q + F + LP V F IS K+ +LK + K F+A P V P
Sbjct: 421 QDK--GFPIELPNVDQMPAAF---ISRKDGL------LLKDNSKKTITFNATPKVLPTAS 469
Query: 468 ------FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTS 521
FSS G A +KPDI+APG DIL++V+ KY+ SGTS
Sbjct: 470 GTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVA-------------NNKYAKLSGTS 514
Query: 522 MACPHAAAVAAYVK----SFHPDWSPS 544
M+ P A + ++ + +PD +PS
Sbjct: 515 MSAPLVAGIMGLLQKQYETQYPDMTPS 541
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 128/507 (25%), Positives = 204/507 (40%), Gaps = 121/507 (23%)
Query: 104 PSRTLQFHTTRSWDFMGLN-----QSITRKHSVESNIIIGVIDSGIWPESESF------- 151
P++T T LN +++ K + ++ VID+G E++
Sbjct: 90 PAKTADIPATSKETIRDLNDPSHVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKSK 149
Query: 152 ----SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG-TARDKDGHGTHTASTAA 206
S E A KK G G N+K+ Y+ DG TA D++ HGTH + +
Sbjct: 150 ARYQSKEDLEKA-KKDHGITYGE---WVNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILS 204
Query: 207 GN---EVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA--STDILAAFDDAIADGVD 261
GN E K+ Y + G +P A++ +V +G A + + A DA+ G
Sbjct: 205 GNAPSETKEP--YRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAK 257
Query: 262 IITVSLG------GNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGS------------ 303
+I +S G N+P D K A +A KG+ + SAGN S
Sbjct: 258 VINMSFGNAALAYANLP-DETKKAFD----YAKSKGVSIVTSAGNDSSFGGKTRLPLADH 312
Query: 304 -NLGFVYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGK 360
+ G V + A ++VA+ + D+ + ++ + + K+ P++
Sbjct: 313 PDYGVVGTPAAADSTLTVASYSPDKQLTETA-----------TVKTADQQDKEMPVLSTN 361
Query: 361 EVSESCPEFSSQACNPGCINSSL--VKGKIVMCSK-----FDGYTEVHKVGAAGSILFND 413
E + N G VKGKI + + D K GA G +++++
Sbjct: 362 RF-EPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN 420
Query: 414 QYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKD--FDA-PVVAP--- 467
Q + F + LP V F IS K+ +LK + K F+A P V P
Sbjct: 421 QDK--GFPIELPNVDQMPAAF---ISRKDGL------LLKDNSKKTITFNATPKVLPTAS 469
Query: 468 ------FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTS 521
FSS G A +KPDI+APG DIL++V+ KY+ SGTS
Sbjct: 470 GTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVA-------------NNKYAKLSGTS 514
Query: 522 MACPHAAAVAAYVK----SFHPDWSPS 544
M+ P A + ++ + +PD +PS
Sbjct: 515 MSAPLVAGIMGLLQKQYETQYPDMTPS 541
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 177/419 (42%), Gaps = 99/419 (23%)
Query: 175 CNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGN---EVKDASFYGVGQGTARGGVPSA 230
N+K+ Y+ DG TA D++ HGTH + +GN E K+ Y + G +P A
Sbjct: 171 VNDKIAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEA 222
Query: 231 RIAAYKVCNPSGCA--STDILAAFDDAIADGVDIITVSLG------GNIPVDFIKDAIAI 282
++ +V +G A + + A DA+ G +I +S G N+P D K A
Sbjct: 223 QLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLP-DETKKAFD- 280
Query: 283 GAFHAMEKGILTLNSAGNSGS-------------NLGFVYS--VAPWLMSVAASTTDRLF 327
+A KG+ + SAGN S + G V + A ++VA+ + D+
Sbjct: 281 ---YAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 337
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSL--VK 385
+ ++ + + K+ P++ E + N G VK
Sbjct: 338 TETA-----------TVKTADQQDKEMPVLSTNRF-EPNKAYDYAYANRGMKEDDFKDVK 385
Query: 386 GKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE----KVSFVVSLPAVAVSM----- 431
GKI + + D K GA G +++++Q + ++ V +PA +S
Sbjct: 386 GKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 445
Query: 432 --ENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPG 489
EN I++ N+T K +L T + ++ FSS G A +KPDI+APG
Sbjct: 446 LKENPQKTITF-NATPK----VLPTAS-----GTKLSRFSSWGLTA--DGNIKPDIAAPG 493
Query: 490 VDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVK----SFHPDWSPS 544
DIL++V+ KY+ SGTSM+ P A + ++ + +PD +PS
Sbjct: 494 QDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 539
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 174/420 (41%), Gaps = 101/420 (24%)
Query: 175 CNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGN---EVKDASFYGVGQGTARGGVPSA 230
N+K+ Y+ DG TA D++ HGTH + +GN E K+ Y + G +P A
Sbjct: 171 VNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEA 222
Query: 231 RIAAYKVCNPSGCA--STDILAAFDDAIADGVDIITVSLG------GNIPVDFIKDAIAI 282
++ +V +G A + + A DA+ G +I +S G N+P D K A
Sbjct: 223 QLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLP-DETKKAFD- 280
Query: 283 GAFHAMEKGILTLNSAGNSGS-------------NLGFVYS--VAPWLMSVAASTTDRLF 327
+A KG+ + SAGN S + G V + A ++VA+ + D+
Sbjct: 281 ---YAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 337
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSL--VK 385
+ + + + + K+ P++ E + N G VK
Sbjct: 338 TETAM-----------VKTDDQQDKEMPVLSTNRF-EPNKAYDYAYANRGMKEDDFKDVK 385
Query: 386 GKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISY 440
GKI + + D K GA G +++++Q + F + LP V F IS
Sbjct: 386 GKIALIERGDIDFKDKVANAKKAGAVGVLIYDNQDK--GFPIELPNVDQMPAAF---ISR 440
Query: 441 KNSTKKPEAEILKTEAIKD--FDA-PVVAP---------FSSRGPNAILPDILKPDISAP 488
K+ +LK K F+A P V P FSS G A +KPDI+AP
Sbjct: 441 KDGL------LLKDNPQKTITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAP 492
Query: 489 GVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVK----SFHPDWSPS 544
G DIL++V+ KY+ SGTSM+ P A + ++ + +PD +PS
Sbjct: 493 GQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 539
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 176/419 (42%), Gaps = 99/419 (23%)
Query: 175 CNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGN---EVKDASFYGVGQGTARGGVPSA 230
N+K+ Y+ DG TA D++ HGTH + +GN E K+ Y + G +P A
Sbjct: 171 VNDKVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEA 222
Query: 231 RIAAYKVCNPSGCA--STDILAAFDDAIADGVDIITVSLG------GNIPVDFIKDAIAI 282
++ +V +G A + + A DA+ G +I +S G N+P D K A
Sbjct: 223 QLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLP-DETKKAFD- 280
Query: 283 GAFHAMEKGILTLNSAGNSGS-------------NLGFVYS--VAPWLMSVAASTTDRLF 327
+A KG+ + SAGN S + G V + A ++VA+ + D+
Sbjct: 281 ---YAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 337
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSL--VK 385
+ ++ + + K+ P++ E + N G VK
Sbjct: 338 TETA-----------TVKTADQQDKEMPVLSTNRF-EPNKAYDYAYANRGMKEDDFKDVK 385
Query: 386 GKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE----KVSFVVSLPAVAVSM----- 431
GKI + + D K GA G +++++Q + ++ V +PA +S
Sbjct: 386 GKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 445
Query: 432 --ENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPG 489
EN I++ N+T K +L T + ++ FSS G A +KPDI+APG
Sbjct: 446 LKENPQKTITF-NATPK----VLPTAS-----GTKLSRFSSWGLTA--DGNIKPDIAAPG 493
Query: 490 VDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKS----FHPDWSPS 544
DIL++V+ KY+ SGTSM+ P A + ++ +PD +PS
Sbjct: 494 QDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPS 539
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| 359478595 | 717 | PREDICTED: cucumisin-like [Vitis vinifer | 0.958 | 0.970 | 0.607 | 0.0 | |
| 225434782 | 737 | PREDICTED: cucumisin-like [Vitis vinifer | 0.986 | 0.971 | 0.602 | 0.0 | |
| 224106379 | 710 | predicted protein [Populus trichocarpa] | 0.943 | 0.964 | 0.620 | 0.0 | |
| 297745991 | 705 | unnamed protein product [Vitis vinifera] | 0.950 | 0.978 | 0.607 | 0.0 | |
| 297745988 | 1472 | unnamed protein product [Vitis vinifera] | 0.943 | 0.465 | 0.617 | 0.0 | |
| 359478633 | 740 | PREDICTED: cucumisin [Vitis vinifera] | 0.987 | 0.968 | 0.597 | 0.0 | |
| 255558936 | 2072 | peptidase, putative [Ricinus communis] g | 0.932 | 0.326 | 0.606 | 0.0 | |
| 297746066 | 703 | unnamed protein product [Vitis vinifera] | 0.936 | 0.967 | 0.610 | 0.0 | |
| 359478593 | 715 | PREDICTED: cucumisin-like [Vitis vinifer | 0.957 | 0.972 | 0.588 | 0.0 | |
| 297745989 | 708 | unnamed protein product [Vitis vinifera] | 0.940 | 0.964 | 0.591 | 0.0 |
| >gi|359478595|ref|XP_002280372.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/714 (60%), Positives = 541/714 (75%), Gaps = 18/714 (2%)
Query: 27 ATYDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLT 86
A+ +DRKVYIVY+GSLP+GE+ S H +IL++V+EGSS D LVRSY+RSFNGFAAKLT
Sbjct: 8 ASDEDRKVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLT 67
Query: 87 DLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWP 146
+ ER+KL + + VVS+FPS LQ TTRSWDFMGL+++I RK +VES++I+GVID+GIWP
Sbjct: 68 EKEREKLCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWP 127
Query: 147 ESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTA 202
ES SFSDEGFGP PKKWKG C+GGKNFTCN K+IGA+ Y + D + RD+DGHG+HTA
Sbjct: 128 ESPSFSDEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTA 187
Query: 203 STAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDI 262
STAAGN++K ASFYGV +G+ARGGVPSARIA YKVC SGCA DILAAFDDAI+DGVDI
Sbjct: 188 STAAGNKIKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDI 247
Query: 263 ITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAAST 322
I+VSLG + +D++AIG+FHAM KGILTLNSAGN G N V SVAPW++SVAAST
Sbjct: 248 ISVSLGKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAAST 307
Query: 323 TDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSS 382
TDR + KV+LGNG TL+G SIN+F + G +FPLV+GK+ + +C E+ +Q C+ C+ S
Sbjct: 308 TDRQIITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERS 367
Query: 383 LVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKN 442
LV+GKI++C G + H+ GA GSI Q V +V P ++ E F + +Y
Sbjct: 368 LVEGKIILCRSITGDRDAHEAGAVGSI---SQEFDVPSIVPFPISTLNEEEFRMIETYYI 424
Query: 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPI 502
STK P+A ILK+E+ KD APVVA FSSRGPN I+P+ILKPDI+APGVDILAA SP+AP+
Sbjct: 425 STKNPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPV 484
Query: 503 STDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKV 562
+ + EDKR VKY+I SGTSM+CPH A +AAY+K+FHPDWSPSAI+SA++TTAWPMN +
Sbjct: 485 TDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTY 544
Query: 563 NDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSN 622
+D E+AFGSGHV+PVKAV+PGL+YE K DYI ++CS+GY+ VR +SGDNS+CPK +
Sbjct: 545 DDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDT- 603
Query: 623 KLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP--- 679
K S KDLNYPSMA +V K F V FPR VTN G ANSTY+A + I V+V P
Sbjct: 604 KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDIL 663
Query: 680 ------EKKPFVVTVTGKGLPE-SGTVVPATLVWSDGIHSVRSPIVVHTQQGQG 726
EKK FVVTV G+GL + A+LVWSDG HSVRSPIV + + G
Sbjct: 664 SFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIVAYIDRNIG 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434782|ref|XP_002280283.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/735 (60%), Positives = 541/735 (73%), Gaps = 19/735 (2%)
Query: 1 MAKINGFLLFQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLPKGE-YVTSSHHQSILQE 59
MAK + + + + F + + A +DRKVY+VY+G LP+ + Y SIL
Sbjct: 1 MAKFHSQWFYHIYAIVFIFITRTQYCAADEDRKVYVVYLGHLPENQAYSPMGQQYSILGS 60
Query: 60 VVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFM 119
V+E SS+ VRSYR+SFNGFAA+LTD E+++LA+ME+VVS+FPS+TLQ T+RSWDFM
Sbjct: 61 VLETSSISQAFVRSYRKSFNGFAARLTDREKERLANMEDVVSIFPSKTLQPQTSRSWDFM 120
Query: 120 GLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKL 179
G +SI R+ VES++IIGV D+GIWPESESFSD+GFGP P+KW+G C GGKNFTCNNKL
Sbjct: 121 GFTESIRRRPFVESDVIIGVFDTGIWPESESFSDKGFGPIPRKWRGVCQGGKNFTCNNKL 180
Query: 180 IGARYYTT----DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAY 235
IGAR Y D RD DGHGTHTASTAAGN V ASF+GV +GTARGGVPSARIAAY
Sbjct: 181 IGARNYNAKKAPDNYVRDIDGHGTHTASTAAGNPVT-ASFFGVAKGTARGGVPSARIAAY 239
Query: 236 KVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
KVC+PSGC DI+AAFDDAIADGVDIIT+SLG VDF D+IAIGAFHAM+KGILT+
Sbjct: 240 KVCHPSGCEEADIMAAFDDAIADGVDIITISLGLGGAVDFTIDSIAIGAFHAMQKGILTV 299
Query: 296 NSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355
NSAGN+G VAPWL+SVAAS+TDR + KV+LG+G L+G +INSF ++G+KFP
Sbjct: 300 NSAGNNGPKRATAVGVAPWLLSVAASSTDRRIISKVILGDGTRLTGAAINSFQLRGEKFP 359
Query: 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQY 415
LV+GK+ + C FS+Q C C++S LVKGKIV+C F G E K GA G+IL ND
Sbjct: 360 LVYGKDATSKCDAFSAQRCISKCLDSKLVKGKIVVCQAFWGLQEAFKAGAVGAILLNDFQ 419
Query: 416 EKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNA 475
VSF+V LPA A+ + FN L+SY NSTK PEA IL++ + KD APVVA FSSRGPN
Sbjct: 420 TDVSFIVPLPASALRPKRFNKLLSYINSTKSPEATILRSVSRKDASAPVVAQFSSRGPNI 479
Query: 476 ILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVK 535
ILP+ILKPDISAPGVDILAA SPLA S DKR +Y+I SGTSMACPH A VAAYVK
Sbjct: 480 ILPEILKPDISAPGVDILAAFSPLASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVK 539
Query: 536 SFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIK 595
+FHP+WSPSAI+SA+MTTAW MN+++ D E+A+GSGHVNPVKA++PGLIY KQDY+
Sbjct: 540 TFHPNWSPSAIQSALMTTAWRMNATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVN 599
Query: 596 ILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNV 655
+LC +GY+ +R I+G+NS CPK S SAKDLNYPSMA +V KPF V FPR V NV
Sbjct: 600 MLCGMGYDSKNMRLITGENSQCPKNST-FSAKDLNYPSMAVKVPPNKPFKVEFPRRVKNV 658
Query: 656 GLANSTYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKGLPESGTVVPATLVW 706
G A S Y+A+ + V+V+P E+K FVV+V GKGL + A+LVW
Sbjct: 659 GPAPSIYKAEVTTTSPRLKVRVIPNVLSFRSLYEEKHFVVSVVGKGLE---LMESASLVW 715
Query: 707 SDGIHSVRSPIVVHT 721
SDG H V+SPIVV+T
Sbjct: 716 SDGRHLVKSPIVVYT 730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106379|ref|XP_002314147.1| predicted protein [Populus trichocarpa] gi|222850555|gb|EEE88102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/698 (62%), Positives = 534/698 (76%), Gaps = 13/698 (1%)
Query: 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQ 91
++ YIVY+GSLP+GEY SSHH S+LQEVV+ SS +VLVRSY+RSFNGF+AKLT E Q
Sbjct: 4 KQEYIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQ 63
Query: 92 KLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESF 151
KL S +EVVS+FPS TLQ TTRSWDFMG N + + K S+II+GVID+GIWPESESF
Sbjct: 64 KLVSKKEVVSIFPSTTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESF 123
Query: 152 SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211
+D+GFGP P+KW+GAC GG+NFTCNNK+IGAR+Y+ +ARD GHG+HTASTAAGN VK
Sbjct: 124 NDDGFGPPPRKWRGACEGGENFTCNNKIIGARHYSFS-SARDDLGHGSHTASTAAGNIVK 182
Query: 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNI 271
ASFYG+ QGTARGGVPSARI+AYKVC P C S+DIL+AFDDAIADGVDIIT+S+GGN
Sbjct: 183 KASFYGLAQGTARGGVPSARISAYKVCGPGSCQSSDILSAFDDAIADGVDIITISIGGNQ 242
Query: 272 PVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKV 331
+F D IAIG FH+M KGILTL SAGN G G V SVAPW+ +VAAS+TDR +DKV
Sbjct: 243 AQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVSGSVASVAPWIFTVAASSTDRRIIDKV 302
Query: 332 LLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMC 391
+LGNG TL G S+NSF++KGKKFPLV+GK S C + C GC++ +LVKGKIV+C
Sbjct: 303 VLGNGKTLVGNSVNSFSLKGKKFPLVYGKGASRECKHLEASLCYSGCLDRTLVKGKIVLC 362
Query: 392 SKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEI 451
+G TE + GA G+IL +E +SF++ LP ++++ + N++ SY NSTKKP A I
Sbjct: 363 DDVNGRTEAKRAGALGAIL-PISFEDISFILPLPGLSLTEDKLNAVKSYLNSTKKPSANI 421
Query: 452 LKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRR 511
LK+EAIKD AP VA FSSRGPN I+ DILKPD SAPGVDILAA P+ + D DKR
Sbjct: 422 LKSEAIKDNAAPEVASFSSRGPNPIISDILKPDASAPGVDILAAFPPVLSPTDDTADKRH 481
Query: 512 VKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGS 571
VKYS+ SGTSMACPHAA VAA+VK+ HPDWS SAI+SAIMTTAWPMN ++ ++ E AFGS
Sbjct: 482 VKYSVMSGTSMACPHAAGVAAHVKAAHPDWSASAIKSAIMTTAWPMNVTERSEGEFAFGS 541
Query: 572 GHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNY 631
GHVNPV A++PGL+YET K DYI++ C +GY +R ISGDNS+C K + +DLNY
Sbjct: 542 GHVNPVTAIHPGLVYETQKSDYIQLFCGLGYTAEKIRQISGDNSSCSKAARNTLPRDLNY 601
Query: 632 PSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP---------EKK 682
PSMAA+V+ + FT+ F R VTNVG ANSTY+AK F + + + +KVVP EKK
Sbjct: 602 PSMAAKVAVEESFTIKFHRTVTNVGNANSTYKAKIFSRSS-LKIKVVPEALSFKSLKEKK 660
Query: 683 PFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVH 720
F VT+ G+ L + +++ A+LVWSDG HSVRSPIVV+
Sbjct: 661 SFAVTIVGRDLTYN-SILSASLVWSDGSHSVRSPIVVY 697
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745991|emb|CBI16047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/708 (60%), Positives = 536/708 (75%), Gaps = 18/708 (2%)
Query: 33 KVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQK 92
+VYIVY+GSLP+GE+ S H +IL++V+EGSS D LVRSY+RSFNGFAAKLT+ ER+K
Sbjct: 2 QVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREK 61
Query: 93 LASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFS 152
L + + VVS+FPS LQ TTRSWDFMGL+++I RK +VES++I+GVID+GIWPES SFS
Sbjct: 62 LCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFS 121
Query: 153 DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTASTAAGN 208
DEGFGP PKKWKG C+GGKNFTCN K+IGA+ Y + D + RD+DGHG+HTASTAAGN
Sbjct: 122 DEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGN 181
Query: 209 EVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLG 268
++K ASFYGV +G+ARGGVPSARIA YKVC SGCA DILAAFDDAI+DGVDII+VSLG
Sbjct: 182 KIKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSLG 241
Query: 269 GNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFV 328
+ +D++AIG+FHAM KGILTLNSAGN G N V SVAPW++SVAASTTDR +
Sbjct: 242 KRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQII 301
Query: 329 DKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKI 388
KV+LGNG TL+G SIN+F + G +FPLV+GK+ + +C E+ +Q C+ C+ SLV+GKI
Sbjct: 302 TKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGKI 361
Query: 389 VMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPE 448
++C G + H+ GA GSI Q V +V P ++ E F + +Y STK P+
Sbjct: 362 ILCRSITGDRDAHEAGAVGSI---SQEFDVPSIVPFPISTLNEEEFRMIETYYISTKNPK 418
Query: 449 AEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPED 508
A ILK+E+ KD APVVA FSSRGPN I+P+ILKPDI+APGVDILAA SP+AP++ + ED
Sbjct: 419 ANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPVTDEAED 478
Query: 509 KRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVA 568
KR VKY+I SGTSM+CPH A +AAY+K+FHPDWSPSAI+SA++TTAWPMN + +D E+A
Sbjct: 479 KRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTYDDGELA 538
Query: 569 FGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKD 628
FGSGHV+PVKAV+PGL+YE K DYI ++CS+GY+ VR +SGDNS+CPK + K S KD
Sbjct: 539 FGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDT-KGSPKD 597
Query: 629 LNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP--------- 679
LNYPSMA +V K F V FPR VTN G ANSTY+A + I V+V P
Sbjct: 598 LNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDILSFKLEK 657
Query: 680 EKKPFVVTVTGKGLPE-SGTVVPATLVWSDGIHSVRSPIVVHTQQGQG 726
EKK FVVTV G+GL + A+LVWSDG HSVRSPIV + + G
Sbjct: 658 EKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIVAYIDRNIG 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745988|emb|CBI16044.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/705 (61%), Positives = 527/705 (74%), Gaps = 20/705 (2%)
Query: 33 KVYIVYIGSLPKGE-YVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQ 91
+VY+VY+G LP+ + Y SIL V+E SS+ VRSYR+SFNGFAA+LTD E++
Sbjct: 769 QVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKE 828
Query: 92 KLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESF 151
+LA+ME+VVS+FPS+TLQ T+RSWDFMG +SI R+ VES++IIGV D+GIWPESESF
Sbjct: 829 RLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESF 888
Query: 152 SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTASTAAG 207
SD+GFGP P+KW+G C GGKNFTCNNKLIGAR Y D RD DGHGTHTASTAAG
Sbjct: 889 SDKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAAG 948
Query: 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSL 267
N V ASF+GV +GTARGGVPSARIAAYKVC+PSGC DI+AAFDDAIADGVDIIT+SL
Sbjct: 949 NPVT-ASFFGVAKGTARGGVPSARIAAYKVCHPSGCEEADIMAAFDDAIADGVDIITISL 1007
Query: 268 GGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLF 327
G VDF D+IAIGAFHAM+KGILT+NSAGN+G VAPWL+SVAAS+TDR
Sbjct: 1008 GLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRRI 1067
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGK 387
+ KV+LG+G L+G +INSF ++G+KFPLV+GK+ + C FS+Q C C++S LVKGK
Sbjct: 1068 ISKVILGDGTRLTGAAINSFQLRGEKFPLVYGKDATSKCDAFSAQ-CISKCLDSKLVKGK 1126
Query: 388 IVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKP 447
IV+C F G E K GA G+IL ND VSF+V LPA A+ + FN L+SY NSTK P
Sbjct: 1127 IVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNKLLSYINSTKSP 1186
Query: 448 EAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPE 507
EA IL++ + KD APVVA FSSRGPN ILP+ILKPDISAPGVDILAA SPLA S
Sbjct: 1187 EATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAFSPLASPSEISG 1246
Query: 508 DKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEV 567
DKR +Y+I SGTSMACPH A VAAYVK+FHP+WSPSAI+SA+MTTAW MN+++ D E+
Sbjct: 1247 DKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWRMNATRTPDGEL 1306
Query: 568 AFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAK 627
A+GSGHVNPVKA++PGLIY KQDY+ +LC +GY+ +R I+G+NS CPK S SAK
Sbjct: 1307 AYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQCPKNST-FSAK 1365
Query: 628 DLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP-------- 679
DLNYPSMA +V KPF V FPR V NVG A S Y+A+ + V+V+P
Sbjct: 1366 DLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVRVIPNVLSFRSL 1425
Query: 680 -EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVHTQQ 723
E+K FVV+V GKGL + A+LVWSDG H V+SPIVV+T
Sbjct: 1426 YEEKHFVVSVVGKGLE---LMESASLVWSDGRHLVKSPIVVYTDN 1467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478633|ref|XP_002280951.2| PREDICTED: cucumisin [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/737 (59%), Positives = 538/737 (72%), Gaps = 20/737 (2%)
Query: 1 MAKINGFLLFQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLPKGEYVTSSHHQSILQEV 60
MA+ N +F + ++F AA +RK YIVY+G+LP+ ++ S H SIL++
Sbjct: 1 MARFNFVGVFS-ICLLVFATSFKGGAANDQERKTYIVYMGALPQQQFSPLSQHLSILEDA 59
Query: 61 VEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMG 120
+ GSS D LVRSY RSFNGFAAKLT+ ER+KLAS EEVVSVFPS LQ HTTRSWDFMG
Sbjct: 60 LGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEEVVSVFPSGILQLHTTRSWDFMG 119
Query: 121 LNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLI 180
Q++ R S+ES+IIIGV+D+GIWPES+SFSDEG GP PKKWKG+C GG+NFTCN K+I
Sbjct: 120 FPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGPVPKKWKGSCKGGQNFTCNKKII 179
Query: 181 GARYYTT----DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYK 236
GAR Y + D TARD +GHGTHTASTAAG+ VK ASFYGVG+G ARGGVPSARIA YK
Sbjct: 180 GARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGASFYGVGKGDARGGVPSARIAVYK 239
Query: 237 VCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLN 296
VC +GC D++AAFDDAI+DGVDIITVSLG + D+I IGAFHAM KGILTLN
Sbjct: 240 VCYETGCTVADVMAAFDDAISDGVDIITVSLGAAAALPLDSDSIGIGAFHAMAKGILTLN 299
Query: 297 SAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPL 356
SAGN+G V SVAPW++SVAASTTDR + +V+LGNG T+ G +INSF + G P+
Sbjct: 300 SAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVLGNGVTVEGIAINSFELNGTNHPI 359
Query: 357 VHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDG-YTEVHKVGAAGSILFNDQY 415
V+GK S +C + +++ C P C+N L KGKIV+C Y E +VGA G+I +Y
Sbjct: 360 VYGKTAS-TCDKQNAEICRPSCLNEDLSKGKIVLCKNNPQIYVEASRVGALGTITLAQEY 418
Query: 416 -EKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPN 474
EKV F+V +P ++ +F + +Y NSTKKP+A ILK+E++ D APVVA FSSRGPN
Sbjct: 419 QEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPKANILKSESLNDTSAPVVAFFSSRGPN 478
Query: 475 AILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYV 534
I+PD LKPDI+APGVDILAA SP+APIS ED RRV Y+ SGTSM+CPHAAAVAAYV
Sbjct: 479 RIVPDFLKPDITAPGVDILAAFSPIAPISDTDEDDRRVNYNFLSGTSMSCPHAAAVAAYV 538
Query: 535 KSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYI 594
KSFHP WSPSAI+SAIMTTA ++ S D E+A+GSGH++PVKA +PGL+Y+ SK+DYI
Sbjct: 539 KSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELAYGSGHIDPVKARSPGLVYDASKEDYI 598
Query: 595 KILCSIGYNESIVRSISGDNST-CPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVT 653
K++C++GY+ + VR ISGDNST CPK K S +DLNYPSMAA+V KPF V FPR VT
Sbjct: 599 KMMCTMGYDTNQVRLISGDNSTSCPK-DGKGSPRDLNYPSMAAKVDPKKPFAVKFPRTVT 657
Query: 654 NVGLANSTYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKGLP-ESGTVVPAT 703
NVG ANSTY+AK + I V+V P E K F+VTVTG GL E A+
Sbjct: 658 NVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASAS 717
Query: 704 LVWSDGIHSVRSPIVVH 720
L WSDG H VRSPI V+
Sbjct: 718 LAWSDGNHHVRSPIFVY 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558936|ref|XP_002520491.1| peptidase, putative [Ricinus communis] gi|223540333|gb|EEF41904.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/694 (60%), Positives = 533/694 (76%), Gaps = 17/694 (2%)
Query: 33 KVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSS-VGDVLVRSYRRSFNGFAAKLTDLERQ 91
+++IVY+GSLPK EY SHH S+LQEV E SS + ++LV SYRRSFNGFAAKL+D E Q
Sbjct: 5 QLHIVYMGSLPKVEYSPLSHHLSLLQEVTESSSSIENLLVTSYRRSFNGFAAKLSDFEAQ 64
Query: 92 KLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESF 151
KLASM+EVVSVFPSR L TTRSW FMGL++ R ESN+I+GV+D+GIWPESESF
Sbjct: 65 KLASMKEVVSVFPSRILDLQTTRSWSFMGLDEGARRNPIAESNVIVGVMDTGIWPESESF 124
Query: 152 SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG----TARDKDGHGTHTASTAAG 207
SD+GF P PK WKG+CNGG NFTCNNK+IGARYY + +ARD GHGTHTASTAAG
Sbjct: 125 SDKGFSPPPKNWKGSCNGGLNFTCNNKIIGARYYNSTQLRIISARDDVGHGTHTASTAAG 184
Query: 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSL 267
N+V DASF+G+ +GTARGGVPSARI+AY+VC+ GC+ ++LAAFDDAIADGVDIIT+S+
Sbjct: 185 NKVMDASFFGIARGTARGGVPSARISAYRVCSVEGCSGAEVLAAFDDAIADGVDIITISV 244
Query: 268 GGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLF 327
G + +++ +D IAIGAFHAMEKGI SAGN+G +G V SVAPW+++VAAS+ DR
Sbjct: 245 GPSYALNYYEDPIAIGAFHAMEKGIFVSQSAGNNGVQIGSVSSVAPWILTVAASSKDRRI 304
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESC-PEFSSQACNPGCINSSLVKG 386
+DKV+LGNG TL+G SINSFA+KG+ FPL++G S +C PEF+ + C GC+++SLVKG
Sbjct: 305 IDKVVLGNGKTLTGTSINSFALKGENFPLIYGIGASATCTPEFA-RVCQLGCLDASLVKG 363
Query: 387 KIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKK 446
KIV+C G+ E+ +VGA GSIL ++ E V+FV S P ++++ +N ++ SY NST +
Sbjct: 364 KIVLCDDSRGHFEIERVGAVGSILASNGIEDVAFVASSPFLSLNDDNIAAVKSYINSTSQ 423
Query: 447 PEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506
P A ILK+EAI D APVVA FSSRGPN I D+LKPDISAPG++ILAA P +
Sbjct: 424 PVANILKSEAINDSSAPVVASFSSRGPNLIALDLLKPDISAPGIEILAAFPTNIPPTESL 483
Query: 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAE 566
D R+VK++I SGTSM+CPHAA VAAYVKSFHP+WSPSAI+SAIMTTA PMN++ +DAE
Sbjct: 484 HDNRQVKFNIVSGTSMSCPHAAGVAAYVKSFHPEWSPSAIKSAIMTTASPMNATTSSDAE 543
Query: 567 VAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSI-GYNESIVRSISGDNSTCPKGSNKLS 625
+A+GSGH+NP KA++PGL+YE S +DYIK LCS+ GY E +VR ISG+N+TCP+G+NK
Sbjct: 544 LAYGSGHLNPSKAIDPGLVYEASNEDYIKFLCSVSGYTEDMVRRISGENTTCPEGANKAL 603
Query: 626 AKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFF--QKFTI------ISVKV 677
+DLNYPSM A ++ + FT++F R VTNVGL NSTY+AK F K I +S K
Sbjct: 604 PRDLNYPSMTAAIAANESFTISFYRTVTNVGLPNSTYKAKVFTGSKLKIKVVPEVLSFKA 663
Query: 678 VPEKKPFVVTVTGKGLPESGTVVPATLVWSDGIH 711
+ EKK F V+V G+ L S + A+LVWSDG H
Sbjct: 664 INEKKSFNVSVDGRYLV-SKEMTSASLVWSDGSH 696
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746066|emb|CBI16122.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/699 (61%), Positives = 519/699 (74%), Gaps = 19/699 (2%)
Query: 39 IGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEE 98
+G+LP+ ++ S H SIL++ + GSS D LVRSY RSFNGFAAKLT+ ER+KLAS EE
Sbjct: 1 MGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEE 60
Query: 99 VVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGP 158
VVSVFPS LQ HTTRSWDFMG Q++ R S+ES+IIIGV+D+GIWPES+SFSDEG GP
Sbjct: 61 VVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGP 120
Query: 159 APKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTASTAAGNEVKDAS 214
PKKWKG+C GG+NFTCN K+IGAR Y + D TARD +GHGTHTASTAAG+ VK AS
Sbjct: 121 VPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGAS 180
Query: 215 FYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD 274
FYGVG+G ARGGVPSARIA YKVC +GC D++AAFDDAI+DGVDIITVSLG +
Sbjct: 181 FYGVGKGDARGGVPSARIAVYKVCYETGCTVADVMAAFDDAISDGVDIITVSLGAAAALP 240
Query: 275 FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLG 334
D+I IGAFHAM KGILTLNSAGN+G V SVAPW++SVAASTTDR + +V+LG
Sbjct: 241 LDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVLG 300
Query: 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKF 394
NG T+ G +INSF + G P+V+GK S +C + +++ C P C+N L KGKIV+C
Sbjct: 301 NGVTVEGIAINSFELNGTNHPIVYGKTAS-TCDKQNAEICRPSCLNEDLSKGKIVLCKNN 359
Query: 395 DG-YTEVHKVGAAGSILFNDQY-EKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452
Y E +VGA G+I +Y EKV F+V +P ++ +F + +Y NSTKKP+A IL
Sbjct: 360 PQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPKANIL 419
Query: 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRV 512
K+E++ D APVVA FSSRGPN I+PD LKPDI+APGVDILAA SP+APIS ED RRV
Sbjct: 420 KSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDTDEDDRRV 479
Query: 513 KYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSG 572
Y+ SGTSM+CPHAAAVAAYVKSFHP WSPSAI+SAIMTTA ++ S D E+A+GSG
Sbjct: 480 NYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELAYGSG 539
Query: 573 HVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNST-CPKGSNKLSAKDLNY 631
H++PVKA +PGL+Y+ SK+DYIK++C++GY+ + VR ISGDNST CPK K S +DLNY
Sbjct: 540 HIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPK-DGKGSPRDLNY 598
Query: 632 PSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP---------EKK 682
PSMAA+V KPF V FPR VTNVG ANSTY+AK + I V+V P E K
Sbjct: 599 PSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSLNETK 658
Query: 683 PFVVTVTGKGLP-ESGTVVPATLVWSDGIHSVRSPIVVH 720
F+VTVTG GL E A+L WSDG H VRSPI V+
Sbjct: 659 SFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPIFVY 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478593|ref|XP_002280348.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/720 (58%), Positives = 526/720 (73%), Gaps = 25/720 (3%)
Query: 21 MTSLWAATYDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNG 80
M+ +A +DRKVYIVY+GSLPKGE+ S H +L++V+EGSS D LVRSY+RSFNG
Sbjct: 1 MSMEASAADEDRKVYIVYLGSLPKGEFSPMSEHLGVLEDVLEGSSSTDSLVRSYKRSFNG 60
Query: 81 FAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVI 140
FAA+LT+ ER+KLA+ E VVSVFPSR L+ HTTRSWDFMG +++ K ++ES++IIGV
Sbjct: 61 FAARLTEKEREKLANKEGVVSVFPSRILKLHTTRSWDFMGFSETSRHKPALESDVIIGVF 120
Query: 141 DSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT-----DGTARDKD 195
D+GIWPES SFSD+ FGP P+KWKG C+GGKNFTCN K+IGAR Y + D + RD D
Sbjct: 121 DTGIWPESPSFSDKDFGPPPRKWKGVCSGGKNFTCNKKVIGARIYNSLNDSFDVSVRDID 180
Query: 196 GHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDA 255
GHG+HTAS AAGN V+ ASF+G+ QG ARGGVPSAR+A YKVC GCAS DILAAFDDA
Sbjct: 181 GHGSHTASIAAGNNVEHASFHGLAQGKARGGVPSARLAIYKVCVFLGCASADILAAFDDA 240
Query: 256 IADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWL 315
IADGVDII++SLG + V +DAIAIGAFHAM GILT++SAGN G + +S APW+
Sbjct: 241 IADGVDIISISLGFDSAVALEEDAIAIGAFHAMAGGILTVHSAGNEGPEVFSTFSSAPWM 300
Query: 316 MSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE--SCPEFSSQA 373
+SVAAST DR +D+V+LGNG L+G S N F M G +PL++GK S +C F SQ
Sbjct: 301 VSVAASTIDRKIIDRVVLGNGTELTGRSFNYFTMNGSMYPLIYGKVTSRANACNNFLSQL 360
Query: 374 CNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMEN 433
C P C+N S V+GKI++C G H GAAGSI + VS VV LP +A+ ++
Sbjct: 361 CVPDCLNKSAVEGKILLCESAYGDEGAHWAGAAGSIKLD---VGVSSVVPLPTIALRGKD 417
Query: 434 FNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDIL 493
+ SY NSTKK EA+ILK+EAIKD APVVAPFSSRGPNA + +I+KPDI+APGVDIL
Sbjct: 418 LRLVRSYYNSTKKAEAKILKSEAIKDSSAPVVAPFSSRGPNAAILEIMKPDITAPGVDIL 477
Query: 494 AAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
AA SP+ + D V+Y+I SGTSMACPH A +AAYVKSFHP WS SAIRSA+MTT
Sbjct: 478 AAFSPIPKLV----DGISVEYNILSGTSMACPHVAGIAAYVKSFHPAWSASAIRSALMTT 533
Query: 554 AWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGD 613
A PM S ++FGSGHV+PVKA++PGL+YET+K +Y ++LC +GYN ++VR ISGD
Sbjct: 534 ARPMKVSANLHGVLSFGSGHVDPVKAISPGLVYETTKDNYTQMLCDMGYNTTMVRLISGD 593
Query: 614 NSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKF--- 670
NS+CPK S K S KDLNYPSM V + +PF V FPR VTNVG +NSTY+A+ +
Sbjct: 594 NSSCPKDS-KGSPKDLNYPSMTVYVKQLRPFKVEFPRTVTNVGRSNSTYKAQVIIRKHPR 652
Query: 671 -------TIISVKVVPEKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVHTQQ 723
++S K++ EKK FVVTVTG+G+ V ATLVWSDG H+VRSPI V+T
Sbjct: 653 MKVDVNPPMLSFKLIKEKKSFVVTVTGQGMTMERPVESATLVWSDGTHTVRSPITVYTDM 712
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745989|emb|CBI16045.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/708 (59%), Positives = 519/708 (73%), Gaps = 25/708 (3%)
Query: 33 KVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQK 92
+VYIVY+GSLPKGE+ S H +L++V+EGSS D LVRSY+RSFNGFAA+LT+ ER+K
Sbjct: 6 QVYIVYLGSLPKGEFSPMSEHLGVLEDVLEGSSSTDSLVRSYKRSFNGFAARLTEKEREK 65
Query: 93 LASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFS 152
LA+ E VVSVFPSR L+ HTTRSWDFMG +++ K ++ES++IIGV D+GIWPES SFS
Sbjct: 66 LANKEGVVSVFPSRILKLHTTRSWDFMGFSETSRHKPALESDVIIGVFDTGIWPESPSFS 125
Query: 153 DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT-----DGTARDKDGHGTHTASTAAG 207
D+ FGP P+KWKG C+GGKNFTCN K+IGAR Y + D + RD DGHG+HTAS AAG
Sbjct: 126 DKDFGPPPRKWKGVCSGGKNFTCNKKVIGARIYNSLNDSFDVSVRDIDGHGSHTASIAAG 185
Query: 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSL 267
N V+ ASF+G+ QG ARGGVPSAR+A YKVC GCAS DILAAFDDAIADGVDII++SL
Sbjct: 186 NNVEHASFHGLAQGKARGGVPSARLAIYKVCVFLGCASADILAAFDDAIADGVDIISISL 245
Query: 268 GGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLF 327
G + V +DAIAIGAFHAM GILT++SAGN G + +S APW++SVAAST DR
Sbjct: 246 GFDSAVALEEDAIAIGAFHAMAGGILTVHSAGNEGPEVFSTFSSAPWMVSVAASTIDRKI 305
Query: 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE--SCPEFSSQACNPGCINSSLVK 385
+D+V+LGNG L+G S N F M G +PL++GK S +C F SQ C P C+N S V+
Sbjct: 306 IDRVVLGNGTELTGRSFNYFTMNGSMYPLIYGKVTSRANACNNFLSQLCVPDCLNKSAVE 365
Query: 386 GKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTK 445
GKI++C G H GAAGSI + VS VV LP +A+ ++ + SY NSTK
Sbjct: 366 GKILLCESAYGDEGAHWAGAAGSIKLD---VGVSSVVPLPTIALRGKDLRLVRSYYNSTK 422
Query: 446 KPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTD 505
K EA+ILK+EAIKD APVVAPFSSRGPNA + +I+KPDI+APGVDILAA SP+ +
Sbjct: 423 KAEAKILKSEAIKDSSAPVVAPFSSRGPNAAILEIMKPDITAPGVDILAAFSPIPKLV-- 480
Query: 506 PEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDA 565
D V+Y+I SGTSMACPH A +AAYVKSFHP WS SAIRSA+MTTA PM S
Sbjct: 481 --DGISVEYNILSGTSMACPHVAGIAAYVKSFHPAWSASAIRSALMTTARPMKVSANLHG 538
Query: 566 EVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLS 625
++FGSGHV+PVKA++PGL+YET+K +Y ++LC +GYN ++VR ISGDNS+CPK S K S
Sbjct: 539 VLSFGSGHVDPVKAISPGLVYETTKDNYTQMLCDMGYNTTMVRLISGDNSSCPKDS-KGS 597
Query: 626 AKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQKF----------TIISV 675
KDLNYPSM V + +PF V FPR VTNVG +NSTY+A+ + ++S
Sbjct: 598 PKDLNYPSMTVYVKQLRPFKVEFPRTVTNVGRSNSTYKAQVIIRKHPRMKVDVNPPMLSF 657
Query: 676 KVVPEKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVHTQQ 723
K++ EKK FVVTVTG+G+ V ATLVWSDG H+VRSPI V+T
Sbjct: 658 KLIKEKKSFVVTVTGQGMTMERPVESATLVWSDGTHTVRSPITVYTDM 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.969 | 0.953 | 0.540 | 1.4e-197 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.983 | 0.970 | 0.527 | 2.1e-196 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.968 | 0.960 | 0.535 | 2.4e-195 | |
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.987 | 0.967 | 0.524 | 3.9e-195 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.968 | 0.955 | 0.528 | 4e-193 | |
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.936 | 0.981 | 0.520 | 1.4e-190 | |
| TAIR|locus:2154503 | 703 | AT5G58820 "AT5G58820" [Arabido | 0.479 | 0.495 | 0.610 | 3.2e-186 | |
| TAIR|locus:2168444 | 732 | AT5G59130 "AT5G59130" [Arabido | 0.969 | 0.961 | 0.506 | 6e-183 | |
| TAIR|locus:2129615 | 687 | AT4G15040 "AT4G15040" [Arabido | 0.931 | 0.983 | 0.495 | 9.4e-169 | |
| TAIR|locus:2126896 | 749 | XSP1 "AT4G00230" [Arabidopsis | 0.954 | 0.925 | 0.419 | 4e-138 |
| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1913 (678.5 bits), Expect = 1.4e-197, P = 1.4e-197
Identities = 396/732 (54%), Positives = 506/732 (69%)
Query: 12 CLSFIIF-FNMTSLWAATYDD--RKVYIVYIGSLP-KGEYVTSSHHQSILQEVVEGSSVG 67
CL IF + S +A DD ++ YIVY+G+LP + +Y+ SHH SILQ+V SS+
Sbjct: 9 CLLSCIFALLVVSFASADKDDQDKQEYIVYMGALPARVDYMPMSHHTSILQDVTGESSIE 68
Query: 68 DVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITR 127
D LVR+Y+RSFNGFAA+LT ER+ LASM+EVVSVFP++ L+ TT SW+FMGL +S
Sbjct: 69 DRLVRNYKRSFNGFAARLTKSEREILASMDEVVSVFPNKKLKLQTTTSWNFMGLKESKRT 128
Query: 128 KHS--VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY 185
K + +ES+ IIGVIDSGI+PES+SFS +GFGP PKKWKG C GGKNFT NNKLIGARYY
Sbjct: 129 KRNTIIESDTIIGVIDSGIYPESDSFSGKGFGPPPKKWKGVCKGGKNFTWNNKLIGARYY 188
Query: 186 TT--DG---TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP 240
T +G +ARD GHG+HTASTAAGN VK SFYG+G GTARGGVP+ARIA YKVC+P
Sbjct: 189 TPKLEGFPESARDYMGHGSHTASTAAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDP 248
Query: 241 S--GCASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSA 298
GC + VDIIT+S+GG+ F +D IAIGAFHAM KGIL +NSA
Sbjct: 249 GVDGCTTDGILAAFDDAIADKVDIITISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSA 308
Query: 299 GNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVH 358
GNSG V S+APW+ +VAAS T+R FV KV+LGNG T+ G S+NSF + GKK+PLV+
Sbjct: 309 GNSGPEPSTVASIAPWMFTVAASNTNRAFVTKVVLGNGKTV-GRSVNSFDLNGKKYPLVY 367
Query: 359 GKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKV 418
GK S SC S+ C+PGC++S VKGKIV+C E +GA SI+ + + + V
Sbjct: 368 GKSASSSCGAASAGFCSPGCLDSKRVKGKIVLCDSPQNPDEAQAMGAIASIVRSHRTD-V 426
Query: 419 SFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILP 478
+ + S P + +++N+++SY NSTK P+A +LK+E I + APVVA + SRGPN I+P
Sbjct: 427 ASIFSFPVSVLLEDDYNTVLSYMNSTKNPKAAVLKSETIFNQRAPVVASYFSRGPNTIIP 486
Query: 479 DILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFH 538
DILKPDI+APG +I+AA SP AP S D RRVKYS+++GTSM+CPH Y+KSFH
Sbjct: 487 DILKPDITAPGSEIVAAYSPDAPPSIS--DTRRVKYSVDTGTSMSCPHVAGVAAYLKSFH 544
Query: 539 PDWSPSAIRSAIMTTAWPMNSSK--VND-AEVAFGSGHVNPVKAVNPGLIYETSKQDYIK 595
P WSPS I+SAIMTTAWPMN+S N+ AE A+G+GHV+P+ A++PGL+YE +K D+I
Sbjct: 545 PRWSPSMIQSAIMTTAWPMNASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANKSDHIA 604
Query: 596 ILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNV 655
LC + Y +R ISGD+S+C K K ++LNYPSM AQVS AKPF V F R VTNV
Sbjct: 605 FLCGLNYTAKNLRLISGDSSSCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRRTVTNV 664
Query: 656 GLANSTYRAKFF-QKF------TIISXXXXXXXXXXXXXXXGKGLPESGTVVPATLVWSD 708
G N+TY+AK K ++S G G P++ +V A L+WSD
Sbjct: 665 GRPNATYKAKVVGSKLKVKVVPAVLSLKSLYEKKSFTVTASGAG-PKAENLVSAQLIWSD 723
Query: 709 GIHSVRSPIVVH 720
G+H VRSPIVV+
Sbjct: 724 GVHFVRSPIVVY 735
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1902 (674.6 bits), Expect = 2.1e-196, P = 2.1e-196
Identities = 391/741 (52%), Positives = 498/741 (67%)
Query: 1 MAKINGFLLFQCLSFIIFFNMTSLWAATYD-DRKVYIVYIGSLP-KGEYVTSSHHQSILQ 58
MA + L C+ ++ + S A D D++VYIVY+G+LP + +Y+ SHH SILQ
Sbjct: 1 MATAVSYCLLSCIFALLVVSFAS--AGKDDQDKQVYIVYMGALPSRVDYMPMSHHTSILQ 58
Query: 59 EVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDF 118
+V SS+ D LVR+Y+RSFNGFAA+LT+ ER+ LASM+EVVSVFPS+ L TT SW+F
Sbjct: 59 DVTGESSIQDRLVRNYKRSFNGFAARLTESEREILASMDEVVSVFPSKNLNLQTTTSWNF 118
Query: 119 MGLNQSITRKHS--VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCN 176
MGL + K + +ES+ IIGVIDSGI+PES+SFS +GFGP PKKWKG C GG NFTCN
Sbjct: 119 MGLKEGKRTKRNPLIESDTIIGVIDSGIYPESDSFSGKGFGPPPKKWKGVCKGGTNFTCN 178
Query: 177 NKLIGARYYTT--DG---TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSAR 231
NKLIGARYYT +G +ARD GHG+HTAS AAGN VK SFYG+G GT RGGVP+AR
Sbjct: 179 NKLIGARYYTPKLEGFPESARDNTGHGSHTASIAAGNAVKHVSFYGLGNGTVRGGVPAAR 238
Query: 232 IAAYKVCNPS--GCASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAME 289
IA YKVC+P C S VDIITVSLG + F +D +AIGAFHAM
Sbjct: 239 IAVYKVCDPGVIRCTSDGILAAFDDAIADKVDIITVSLGADAVGTFEEDTLAIGAFHAMA 298
Query: 290 KGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAM 349
KGILT+N AGN+G + S+APWL +VAAS +R F+ KV+LGNG T+ G S+NSF +
Sbjct: 299 KGILTVNGAGNNGPERRTIVSMAPWLFTVAASNMNRAFITKVVLGNGKTIVGRSVNSFDL 358
Query: 350 KGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSI 409
GKK+PLV+GK S C S+ C+PGC++S VKGKIV+C E +GA SI
Sbjct: 359 NGKKYPLVYGKSASSRCDASSAGFCSPGCLDSKRVKGKIVLCDTQRNPGEAQAMGAVASI 418
Query: 410 LFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFS 469
+ N YE + V S P +S +++N ++SY NSTK P+A +LK+E I + APVVA +S
Sbjct: 419 VRNP-YEDAASVFSFPVSVLSEDDYNIVLSYVNSTKNPKAAVLKSETIFNQKAPVVASYS 477
Query: 470 SRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXX 529
SRGPN ++ DILKPDI+APG +ILAA SP P S D R VKY++ SGTSM+CPH
Sbjct: 478 SRGPNPLIHDILKPDITAPGSEILAAYSPYVPPSES--DTRHVKYTVISGTSMSCPHVAG 535
Query: 530 XXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKV--ND-AEVAFGSGHVNPVKAVNPGLIY 586
Y+K+FHP WSPS I+SAIMTTAWPMN+S N+ AE A+G+GHV+P+ A++PGL+Y
Sbjct: 536 VAAYIKTFHPLWSPSMIQSAIMTTAWPMNASTSPSNELAEFAYGAGHVDPIAAIHPGLVY 595
Query: 587 ETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTV 646
E +K D+I LC Y +R ISGD+S+C K K ++LNYPSM+AQVS KPF V
Sbjct: 596 EANKSDHITFLCGFNYTGKKLRLISGDSSSCTKEQTKSLTRNLNYPSMSAQVSGTKPFKV 655
Query: 647 NFPRIVTNVGLANSTYRAKFF-QKF------TIISXXXXXXXXXXXXXXXGKGLPESGTV 699
F R VTNVG N+TY+AK K ++S G G P++ +
Sbjct: 656 TFRRTVTNVGRPNATYKAKVVGSKLKVKVVPAVLSLKSLYEKKSFTVTVSGAG-PKAENL 714
Query: 700 VPATLVWSDGIHSVRSPIVVH 720
V A L+WSDG+H VRSPIVV+
Sbjct: 715 VSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 391/730 (53%), Positives = 499/730 (68%)
Query: 9 LFQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLP-KGEYVTSSHHQSILQEVVEGSSVG 67
L CL ++ F ++S+ A T DD++VYIVY+GSL + +Y +S H +ILQEV SS+
Sbjct: 10 LLSCL--LVLF-LSSVSAVT-DDKQVYIVYMGSLSSRADYTPTSDHMNILQEVTGESSIE 65
Query: 68 DVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITR 127
LVRSY+RSFNGFAA+LT+ ER+++A M VVSVFP++ LQ TT SWDFMGL + I
Sbjct: 66 GRLVRSYKRSFNGFAARLTESERERVAKMVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKT 125
Query: 128 KHS--VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY 185
K + VES+ IIGVIDSGI PES+SFSD+GFGP P+KWKG C+GGKNFTCNNKLIGAR Y
Sbjct: 126 KRNPTVESDTIIGVIDSGITPESQSFSDKGFGPPPQKWKGVCSGGKNFTCNNKLIGARDY 185
Query: 186 TTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS 245
T++GT RD DGHGTHTASTAAGN V DASF+G+G GT RGGVP++R+AAYKVC P+GC+S
Sbjct: 186 TSEGT-RDMDGHGTHTASTAAGNAVVDASFFGIGNGTVRGGVPASRVAAYKVCTPTGCSS 244
Query: 246 TXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
GVD+IT+S+G F D IAIGAFHAM KG+LT+NSAGNSG
Sbjct: 245 EALLSAFDDAIADGVDLITISIGDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKP 304
Query: 306 GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSES 365
V VAPW+++VAASTT+R FV KV+LGNG TL G S+N++ MKGK +PLV+GK + S
Sbjct: 305 ISVSGVAPWILTVAASTTNRGFVTKVVLGNGKTLVGKSVNAYEMKGKDYPLVYGKSAASS 364
Query: 366 -CPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSL 424
C S+ C C++ S VKGKI++C G V VGA G +++ V+F+ L
Sbjct: 365 ACDAESAGLCELSCVDKSRVKGKILVCGGPGGLKIVESVGAVG-LIYRTPKPDVAFIHPL 423
Query: 425 PAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPD 484
PA + E+F SL+SY ST P+A +LKTEAI + +PV+A FSSRGPN I DILKPD
Sbjct: 424 PAAGLLTEDFESLVSYLESTDSPQAIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPD 483
Query: 485 ISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPS 544
I+APGV+ILAA SP S D D R VKYS+ SGTSM+CPH YVK+F+P WSPS
Sbjct: 484 ITAPGVEILAAYSPAGEPSQD--DTRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPS 541
Query: 545 AIRSAIMTTAWPMNSSKVNDA--EVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGY 602
I+SAIMTTAWP+N++ A E A+GSGHV+P+ A NPGL+YE K D+I LC + Y
Sbjct: 542 MIQSAIMTTAWPVNATGTGIASTEFAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMNY 601
Query: 603 NESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRA-KPFTVNFPRIVTNVGLANST 661
+++ ISG+ TC + + K+ ++LNYPSM+A++S + FTV F R +TNVG NST
Sbjct: 602 TSQVLKVISGETVTCSE-AKKILPRNLNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNST 660
Query: 662 YRAKFFQ--------KFT--IISXXXXXXXXXXXXXXXGKGLPESGTVVPATLVWSDGIH 711
Y +K K T ++S G L +S A L+WSDG H
Sbjct: 661 YTSKVVAGHGSKLDVKITPSVLSFKTVNEKQSFTVTVTGSNL-DSEVPSSANLIWSDGTH 719
Query: 712 SVRSPIVVHT 721
+VRSPIVV+T
Sbjct: 720 NVRSPIVVYT 729
|
|
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1890 (670.4 bits), Expect = 3.9e-195, P = 3.9e-195
Identities = 389/741 (52%), Positives = 501/741 (67%)
Query: 1 MAKINGFL-LFQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLP-KGEYVTSSHHQSILQ 58
MAK F+ LF L ++ + S + D++VYIVY+GSLP + EY S H SILQ
Sbjct: 1 MAKGTTFIFLFSSL-LVLSLSSVSADKDDHGDQQVYIVYLGSLPSREEYTPMSDHMSILQ 59
Query: 59 EVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDF 118
E+ S + + LVRSY++SFNGFAA+LT+ ER++LA ME VVSVFPSR L+ TT SW+F
Sbjct: 60 EITGESLIENRLVRSYKKSFNGFAARLTESERKRLAGMERVVSVFPSRKLKLQTTSSWNF 119
Query: 119 MGLNQSITRKH--SVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCN 176
MGL + I K S+ES+ IIGVIDSGI+PES+SFSD+GFGP PKKWKG C GGKNFTCN
Sbjct: 120 MGLKEGIKTKRTRSIESDTIIGVIDSGIYPESDSFSDQGFGPPPKKWKGTCAGGKNFTCN 179
Query: 177 NKLIGARYYTTDG----TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARI 232
NK+IGAR YT TARD GHGTHTAS AAGN V +++FYG+G GTARGGVP+ARI
Sbjct: 180 NKVIGARDYTAKSKANQTARDYSGHGTHTASIAAGNAVANSNFYGLGNGTARGGVPAARI 239
Query: 233 AAYKVCNPSGCASTXXXXXXXXXXXXGVDIITVSLG-GNIPVDFIKDAIAIGAFHAMEKG 291
A YKVC+ GC GVD+I++S+ NIP F +D IAIGAFHAM G
Sbjct: 240 AVYKVCDNEGCDGEAMMSAFDDAIADGVDVISISIVLDNIP-PFEEDPIAIGAFHAMAVG 298
Query: 292 ILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKG 351
+LT+N+AGN+G + V S APW+ SVAAS T+R F+ KV+LG+G L G S+N++ M G
Sbjct: 299 VLTVNAAGNNGPKISTVTSTAPWVFSVAASVTNRAFMAKVVLGDGKILIGRSVNTYDMNG 358
Query: 352 KKFPLVHGKEVSES-CPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSIL 410
+PLV+GK + S C ++ C P C++ LVKGKIV+C G E K+GA GSI+
Sbjct: 359 TNYPLVYGKSAALSTCSVDKARLCEPKCLDGKLVKGKIVLCDSTKGLIEAQKLGAVGSIV 418
Query: 411 FNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSS 470
N + ++ +F+ S P +S +++ SL+SY NSTK P+A +LK+E I + AP+VA FSS
Sbjct: 419 KNPEPDR-AFIRSFPVSFLSNDDYKSLVSYMNSTKNPKATVLKSEEISNQRAPLVASFSS 477
Query: 471 RGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXX 530
RGP++I+ DILKPDI+APGV+ILAA SP + + D RRVKYS+ SGTSMACPH
Sbjct: 478 RGPSSIVSDILKPDITAPGVEILAAYSPDSSPTESEFDTRRVKYSVLSGTSMACPHVAGV 537
Query: 531 XXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVN--DAEVAFGSGHVNPVKAVNPGLIYET 588
YVK+FHP WSPS I+SAIMTTAWPMN+S E A+GSGHV+P+ A+NPGL+YE
Sbjct: 538 AAYVKTFHPQWSPSMIQSAIMTTAWPMNASGSGFVSTEFAYGSGHVDPIDAINPGLVYEL 597
Query: 589 SKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNF 648
+K D+I LC + Y +R ISGDNSTC K +K ++LNYP+M+A+VS KPF + F
Sbjct: 598 TKADHINFLCGLNYTSDHLRIISGDNSTCTKEISKTLPRNLNYPTMSAKVSGTKPFNITF 657
Query: 649 PRIVTNVGLANSTYRAKFFQ----KFTI-ISXXXXXXXXXXXXXXXGKGLPES--GTVVP 701
R VTNVG+ STY AK + K +I +S + GT P
Sbjct: 658 QRTVTNVGMQKSTYNAKVVKFPGSKLSIKVSPRVLSMKSMNEKQSFMVTVSSDSIGTKQP 717
Query: 702 --ATLVWSDGIHSVRSPIVVH 720
A L+WSDG H+VRSPI+V+
Sbjct: 718 VSANLIWSDGTHNVRSPIIVY 738
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1871 (663.7 bits), Expect = 4.0e-193, P = 4.0e-193
Identities = 384/727 (52%), Positives = 491/727 (67%)
Query: 12 CL-SFIIFFNMTSLWAATYDDRKVYIVYIGSLP-KGEYVTSSHHQSILQEVVEGSSVGDV 69
CL S+++ ++S+ A +D +VYIVY+GSL + +Y+ +S H SILQ+V SS+
Sbjct: 9 CLYSWLLVLLLSSVSAIIDEDTQVYIVYMGSLSSRADYIPTSDHMSILQQVTGESSIEGR 68
Query: 70 LVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKH 129
LVRSY+RSFNGFAA+LT+ ER +A +E VVSVFP++ LQ HTT SWDFMG+ + K
Sbjct: 69 LVRSYKRSFNGFAARLTESERTLIAEIEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKR 128
Query: 130 S--VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT 187
+ +ES+ IIGVID+GIWPES+SFSD+GFGP PKKWKG C+GGKNFTCNNKLIGAR YT+
Sbjct: 129 NLAIESDTIIGVIDTGIWPESKSFSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYTS 188
Query: 188 DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTX 247
+GT RD GHGTHTASTAAGN VKD SF+G+G GT RGGVP++RIAAYKVC SGC+S
Sbjct: 189 EGT-RDTSGHGTHTASTAAGNAVKDTSFFGIGNGTVRGGVPASRIAAYKVCTDSGCSSEA 247
Query: 248 XXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF 307
GVD+IT+S+G P F D IAIGAFHAM KGILT++SAGNSG
Sbjct: 248 LLSSFDDAIADGVDLITISIGFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTT 307
Query: 308 VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSES-C 366
V VAPW+ +VAASTT+R F+ KV+LGNG TL+G S+N+F MKGKK+PLV+GK + S C
Sbjct: 308 VSHVAPWIFTVAASTTNRGFITKVVLGNGKTLAGRSVNAFDMKGKKYPLVYGKSAASSAC 367
Query: 367 PEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426
++ C P C+N S VKGKI++C GY VGA +I+ V+F LPA
Sbjct: 368 DAKTAALCAPACLNKSRVKGKILVCGGPSGYKIAKSVGAI-AIIDKSPRPDVAFTHHLPA 426
Query: 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDIS 486
+ ++F SL+SY S P+A +LKTE I + +PV+A FSSRGPN I DILKPDI+
Sbjct: 427 SGLKAKDFKSLVSYIESQDSPQAAVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDIT 486
Query: 487 APGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPSAI 546
APGV+ILAA SP S D D RRVKYS+ SGTSMACPH YVK+F+P WSPS I
Sbjct: 487 APGVEILAAFSPNGEPSED--DTRRVKYSVFSGTSMACPHVAGVAAYVKTFYPRWSPSMI 544
Query: 547 RSAIMTTAWPMNSSK--VNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNE 604
+SAIMTTAWP+ + + E A+G+GHV+P+ A+NPGL+YE K D+I LC + Y
Sbjct: 545 QSAIMTTAWPVKAKGRGIASTEFAYGAGHVDPMAALNPGLVYELDKADHIAFLCGMNYTS 604
Query: 605 SIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRA-KPFTVNFPRIVTNVGLANSTYR 663
++ ISGD C K NK+ ++LNYPSM+A++S F+V F R +TNVG NSTY+
Sbjct: 605 KTLKIISGDTVKCSK-KNKILPRNLNYPSMSAKLSGTDSTFSVTFNRTLTNVGTPNSTYK 663
Query: 664 AKFFQ--------KFT--IISXXXXXXXXXXXXXXXGKGLPESGTVVPATLVWSDGIHSV 713
+K K T ++ G + +S A L+WSDG H+V
Sbjct: 664 SKVVAGHGSKLSIKVTPSVLYFKTVNEKQSFSVTVTGSDV-DSEVPSSANLIWSDGTHNV 722
Query: 714 RSPIVVH 720
RSPIVV+
Sbjct: 723 RSPIVVY 729
|
|
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 363/697 (52%), Positives = 480/697 (68%)
Query: 39 IGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEE 98
+G+LP+ +Y SHH SILQ++V + +LVRSY+RSFNGFAA L+ E QKL +M+E
Sbjct: 1 MGTLPEIKYSPPSHHLSILQKLVGTIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMKE 60
Query: 99 VVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGP 158
VVSVFPS++ + TTRSWDF+G + R+ ES++I+GVIDSGIWPESESF DEGFGP
Sbjct: 61 VVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFGP 120
Query: 159 APKKWKGACNGGKNFTCNNKLIGARYYTTDG-TARDKDGHGTHTASTAAGNEVKDASFYG 217
PKKWKG+C GG F CNNKLIGAR+Y +ARD++GHGTHTASTAAGN V+ ASFYG
Sbjct: 121 PPKKWKGSCKGGLKFACNNKLIGARFYNKFADSARDEEGHGTHTASTAAGNAVQAASFYG 180
Query: 218 VGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIK 277
+ QGTARGGVPSARIAAYKVC + C GVD+I++S+ + + +
Sbjct: 181 LAQGTARGGVPSARIAAYKVCF-NRCNDVDILAAFDDAIADGVDVISISISADYVSNLLN 239
Query: 278 DAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGA 337
++AIG+FHAM +GI+T SAGN+G + G V +V+PW+++VAAS TDR F+D+V+LGNG
Sbjct: 240 ASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVLGNGK 299
Query: 338 TLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGY 397
L+G S+N+F + G KFP+V+G+ VS +C + + C+ GC++S LVKGKIV+C F GY
Sbjct: 300 ALTGISVNTFNLNGTKFPIVYGQNVSRNCSQAQAGYCSSGCVDSELVKGKIVLCDDFLGY 359
Query: 398 TEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAI 457
E + GA G I+ N +FVV PA ++ E++ S+ SY S + P+AEIL+TE I
Sbjct: 360 REAYLAGAIGVIVQNTLLPDSAFVVPFPASSLGFEDYKSIKSYIESAEPPQAEILRTEEI 419
Query: 458 KDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIST--DPEDKRRVKYS 515
D +AP V FSSRGP+ ++ ++LKPD+SAPG++ILAA SP+A S+ +PEDKR V+YS
Sbjct: 420 VDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPSSFLNPEDKRSVRYS 479
Query: 516 IESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
+ SGTSMACPH YVKSFHPDWSPSAI+SAIMTTA PMN K + E A+GSG +N
Sbjct: 480 VMSGTSMACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNLKKNPEQEFAYGSGQIN 539
Query: 576 PVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMA 635
P KA +PGL+YE +DY+K+LC+ G++ + + + SG N TC S + KDLNYP+M
Sbjct: 540 PTKASDPGLVYEVETEDYLKMLCAEGFDSTTLTTTSGQNVTC---SERTEVKDLNYPTMT 596
Query: 636 AQVSRAKPFTVNFPRIVTNVGLANSTYRAKFFQ---------KFTIISXXXXXXXXXXXX 686
VS PF V F R VTNVG NSTY+A + I+
Sbjct: 597 TFVSSLDPFNVTFKRTVTNVGFPNSTYKASVVPLQPELQISIEPEILRFGFLEEKKSFVV 656
Query: 687 XXXGKGLPESGTVVPATLVWSDGIHSVRSPIVVHTQQ 723
GK L + G+ V +++VWSDG HSVRSPIV ++ Q
Sbjct: 657 TISGKELKD-GSFVSSSVVWSDGSHSVRSPIVAYSIQ 692
|
|
| TAIR|locus:2154503 AT5G58820 "AT5G58820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 3.2e-186, Sum P(2) = 3.2e-186
Identities = 218/357 (61%), Positives = 264/357 (73%)
Query: 15 FIIFFNMTSLWAATYDD---RKVYIVYIGSLPKG-EYVTSSHHQSILQEVVEGSSVGDVL 70
F++ F ++S+ +A DD ++VY+VY+GSLP EY SHH SILQEV SSV L
Sbjct: 9 FVVLF-LSSV-SAVIDDPQNKQVYVVYMGSLPSLLEYTPLSHHMSILQEVTGDSSVEGRL 66
Query: 71 VRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHS 130
VRSY+RSFNGFAA+LT+ ER ++A ME VVSVFP+ + TT SWDF+GL + K +
Sbjct: 67 VRSYKRSFNGFAARLTESERIRVAEMEGVVSVFPNINYKLQTTASWDFLGLKEGKNTKRN 126
Query: 131 --VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTD 188
+ES+ IIG IDSGIWPESESFSD+GFGP PKKWKG C+GGKNFTCNNKLIGAR YT++
Sbjct: 127 LAIESDTIIGFIDSGIWPESESFSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYTSE 186
Query: 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTXX 248
GT RD GHGTHTASTAAGN V DASF+G+G GTARGGVP++RIAAYKVC+ C +
Sbjct: 187 GT-RDLQGHGTHTASTAAGNAVADASFFGIGNGTARGGVPASRIAAYKVCSEKDCTAASL 245
Query: 249 XXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV 308
GVD+I++SL P + KDAIAIGAFHA KGILT+NSAGNSGS
Sbjct: 246 LSAFDDAIADGVDLISISLASEFPQKYYKDAIAIGAFHANVKGILTVNSAGNSGSFPSTT 305
Query: 309 YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSES 365
SVAPW++SVAAS T+R F KV+LGNG TL G S+NSF +KGKK+PLV+G +ES
Sbjct: 306 ASVAPWILSVAASNTNRGFFTKVVLGNGKTLVGRSVNSFDLKGKKYPLVYGDNFNES 362
|
|
| TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1775 (629.9 bits), Expect = 6.0e-183, P = 6.0e-183
Identities = 375/740 (50%), Positives = 484/740 (65%)
Query: 1 MAKINGFLLFQCLSFIIFFNMTSLWAATY--DDRKVYIVYIGSLP-KGEYVTSSHHQSIL 57
MAK F F ++ F + S+ A T+ D++VYIVY+GSLP + +Y SHH +IL
Sbjct: 1 MAKRGAFSSFHSFLIVLLF-LNSVLAVTHGHQDKQVYIVYMGSLPSRADYTPMSHHMNIL 59
Query: 58 QEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWD 117
QEV SS+ LVRSY+RSFNGF A+LT+ ER+++A VVSVFP++ L+ T+ SWD
Sbjct: 60 QEVARESSIEGRLVRSYKRSFNGFVARLTESERERVA----VVSVFPNKKLKLQTSASWD 115
Query: 118 FMGLNQS--ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTC 175
FMGL + R SVES+ IIGV D GIWPESESFSD+GFGP PKKWKG C GGKNFTC
Sbjct: 116 FMGLKEGKGTKRNPSVESDTIIGVFDGGIWPESESFSDKGFGPPPKKWKGICAGGKNFTC 175
Query: 176 NNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAY 235
NNKLIGAR+Y+ G ARD GHGTHTAS AAGN V + SF+G+G GT RG VP++RIA Y
Sbjct: 176 NNKLIGARHYSP-GDARDSTGHGTHTASIAAGNAVANTSFFGIGNGTVRGAVPASRIAVY 234
Query: 236 KVCNPSGCASTXXXXXXXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTL 295
+VC C GVDIIT+S+G F KD IAIGAFHAM KGILT+
Sbjct: 235 RVC-AGECRDDAILSAFDDAISDGVDIITISIGDINVYPFEKDPIAIGAFHAMSKGILTV 293
Query: 296 NSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355
N+AGN+G + + S+APWL++VAAST +R FV KV+LG+G TL G S+N F +KGKKFP
Sbjct: 294 NAAGNTGPDTASITSLAPWLLTVAASTANREFVSKVVLGDGKTLVGKSVNGFDLKGKKFP 353
Query: 356 LVHGKEVSESCPEFS-SQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQ 414
LV+GK + S + ++ C P C+++SLVKGKI++C++F Y K A +F D
Sbjct: 354 LVYGKSAALSLSQAKCAEDCTPECLDASLVKGKILVCNRFLPYVAYTKRAVAA--IFEDG 411
Query: 415 YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPN 474
+ + LP + ++F S++SY S K PEA +LK+E+I AP + FSSRGPN
Sbjct: 412 SDWAQ-INGLPVSGLQKDDFESVLSYFKSEKSPEAAVLKSESIFYQTAPKILSFSSRGPN 470
Query: 475 AILPDILKPDISAPGVDILAAVSPLAPISTDP-EDKRRVKYSIESGTSMACPHXXXXXXY 533
I+ DILKPDI+APG++ILAA S + P D VKYS+ESGTSM+CPH Y
Sbjct: 471 IIVADILKPDITAPGLEILAANS----LRASPFYDTAYVKYSVESGTSMSCPHAAGVAAY 526
Query: 534 VKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDA--EVAFGSGHVNPVKAVNPGLIYETSKQ 591
VK+FHP WSPS I+SAIMTTAW MN+S+ A E A+G+GHV+P+ A NPGL+YE +K
Sbjct: 527 VKTFHPQWSPSMIKSAIMTTAWSMNASQSGYASTEFAYGAGHVDPIAATNPGLVYEITKT 586
Query: 592 DYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAK-PFTVNFPR 650
DY LC + YN++ V+ ISG+ TC S K+S ++LNYPSM+A++S + F V F R
Sbjct: 587 DYFAFLCGMNYNKTTVKLISGEAVTC---SEKISPRNLNYPSMSAKLSGSNISFIVTFNR 643
Query: 651 IVTNVGLANSTYRAKFF----QKFTII---SXXXXXXXXXXXXXXXGKGLPESGTVVP-- 701
VTNVG NSTY++K K + S E + +P
Sbjct: 644 TVTNVGTPNSTYKSKVVLNHGSKLNVKVSPSVLSMKSMNEKQSFTVTVSASELHSELPSS 703
Query: 702 ATLVWSDGIHSVRSPIVVHT 721
A L+WSDG H+VRSPIVV+T
Sbjct: 704 ANLIWSDGTHNVRSPIVVYT 723
|
|
| TAIR|locus:2129615 AT4G15040 "AT4G15040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1641 (582.7 bits), Expect = 9.4e-169, P = 9.4e-169
Identities = 344/694 (49%), Positives = 440/694 (63%)
Query: 39 IGSLP-KGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASME 97
+G+LP K Y SHHQ+ILQEV+E SSV D LVRSY RSFNGFAAKLT+ E+ KL ME
Sbjct: 1 MGALPSKISYSPMSHHQNILQEVIESSSVEDYLVRSYGRSFNGFAAKLTESEKDKLIGME 60
Query: 98 EVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFG 157
VVSVFPS + TTRS++FMGL VESN+I+GVID GIWPES+SFSDEG G
Sbjct: 61 GVVSVFPSTVYKLFTTRSYEFMGLGDKSNNVPEVESNVIVGVIDGGIWPESKSFSDEGIG 120
Query: 158 PAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYG 217
P PKKWKG C GG NFTCN K+IGAR+Y D +ARD D HG+HTASTAAGN+VK S G
Sbjct: 121 PIPKKWKGTCAGGTNFTCNRKVIGARHYVHD-SARDSDAHGSHTASTAAGNKVKGVSVNG 179
Query: 218 VGQGTARGGVPSARIAAYKVCNPSGCASTXXXXXXXXXXXXGVDIITVSLGGNIP-VDFI 276
V +GTARGGVP RIA YKVC P GC GVD++T+SLGG + VD
Sbjct: 180 VAEGTARGGVPLGRIAVYKVCEPLGCNGERILAAFDDAIADGVDVLTISLGGGVTKVDI- 238
Query: 277 KDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNG 336
D IAIG+FHAM KGI+T + GN+G+ L ++APWL+SVAA +TDR FV V+ G+
Sbjct: 239 -DPIAIGSFHAMTKGIVTTVAVGNAGTALAKADNLAPWLISVAAGSTDRKFVTNVVNGDD 297
Query: 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDG 396
L G SIN F ++GKK+PL +GK S +C E ++ C GC+N+ V+GKIV+C +
Sbjct: 298 KMLPGRSINDFDLEGKKYPLAYGKTASNNCTEELARGCASGCLNT--VEGKIVVCDVPNN 355
Query: 397 YTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEA 456
E GA G+IL + + + + N+ L SY S+ P+ ILKT
Sbjct: 356 VMEQKAAGAVGTILHVTDVDTPG-LGPIAVATLDDTNYEELRSYVLSSPNPQGTILKTNT 414
Query: 457 IKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAA-VSPLAPISTDPEDKRRVKYS 515
+KD APVV FSSRGPN + DIL + S ++ +S + ++ + V Y
Sbjct: 415 VKDNGAPVVPAFSSRGPNTLFSDILSNEHSKRNNRPMSQYISSIFTTGSNRVPGQSVDYY 474
Query: 516 IESGTSMACPHXXXXXXYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
+GTSMACPH YVK+ PDWS SAI+SAIMTTAW MN+SK +AE A+GSG VN
Sbjct: 475 FMTGTSMACPHVAGVAAYVKTLRPDWSASAIKSAIMTTAWAMNASKNAEAEFAYGSGFVN 534
Query: 576 PVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMA 635
P AV+PGL+YE +K+DY+ +LCS+ Y+ + +I+G TC + S KL+ ++LNYPSM+
Sbjct: 535 PTVAVDPGLVYEIAKEDYLNMLCSLDYSSQGISTIAGGTFTCSEQS-KLTMRNLNYPSMS 593
Query: 636 AQVSRAKPFTVNFPRIVTNVGLANSTYRAKFF--QKFTI------ISXXXXXXXXXXXXX 687
A+VS + + F R VTNVG STY+AK K +I +S
Sbjct: 594 AKVSASSSSDITFSRTVTNVGEKGSTYKAKLSGNPKLSIKVEPATLSFKAPGEKKSFTVT 653
Query: 688 XXGKGLPESGTVVPATLVWSDGIHSVRSPIVVHT 721
GK L +V A+L+WSDG H+VRSPIVV+T
Sbjct: 654 VSGKSLAGISNIVSASLIWSDGSHNVRSPIVVYT 687
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| TAIR|locus:2126896 XSP1 "AT4G00230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 304/724 (41%), Positives = 425/724 (58%)
Query: 25 WAATYDD--RKVYIVYIGSLPKGEYVTSSHHQSILQEV-VEGSSVGDVLVRSYRRSFNGF 81
+A+ D+ + YI+Y+G P T H ++L + + + V SY ++FN F
Sbjct: 26 YASAEDEHAKDFYIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAF 85
Query: 82 AAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVESNIIIGVID 141
AAKL+ E +K+ MEEVVSV ++ + HTT+SWDF+GL + R E ++IIGV+D
Sbjct: 86 AAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLD 145
Query: 142 SGIWPESESFSDEGFGPAPKKWKGACNGGKNFT-CNNKLIGARYYTTDGTAR-------- 192
+GI P+SESF D G GP P KWKG+C KNFT CNNK+IGA+Y+ DG
Sbjct: 146 TGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPI 205
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVC-NPSGCASTXXXXX 251
D DGHGTHT+ST AG V +AS YG+ GTARG VPSAR+A YKVC SGCA
Sbjct: 206 DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAG 265
Query: 252 XXXXXXXGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
GV+II++S+GG I D+ D+I++G+FHAM KGILT+ SAGN G + G V +
Sbjct: 266 FEAAIHDGVEIISISIGGPI-ADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNH 324
Query: 312 APWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPE-FS 370
PW+++VAAS DR F K+ LGNG + SG I+ F+ K K +PLV G + +++ + +
Sbjct: 325 EPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYL 384
Query: 371 SQACNPGCINSSLVKGKIVMCSKFDGYTE--VHKVGAAGSILFNDQYEKVSFVVSLPAVA 428
++ C ++ VKGK+++C G E + G AG+I+ +DQY + + PA +
Sbjct: 385 ARYCFSDSLDRKKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATS 444
Query: 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAP 488
V+ + + Y NST+ A I KT + AP VA FSSRGPN +LKPDI+AP
Sbjct: 445 VNSSVGDIIYRYINSTRSASAVIQKTRQVT-IPAPFVASFSSRGPNPGSIRLLKPDIAAP 503
Query: 489 GVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHXXXXXXYVKSFHPDWSPSAIRS 548
G+DILAA + ++ D + K++I SGTSMACPH YVKSFHPDW+P+AI+S
Sbjct: 504 GIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKS 563
Query: 549 AIMTTAWPMNSSKVN-DAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIV 607
AI+T+A P+ S +VN DAE A+G G +NP +A +PGL+Y+ Y++ LC GYN + +
Sbjct: 564 AIITSAKPI-SRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTL 622
Query: 608 RSISGDNS-TCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVN-FPRIVTNVGLANSTY--- 662
+ G S +C L LNYP++ + AK T+ F R VTNVG +S Y
Sbjct: 623 APLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTAT 682
Query: 663 -RAKFFQKFTI----ISXXXXXXXXXXXXXXXGKGLPESGTVVPATLVWSDGIHSVRSPI 717
RA + T+ +S K + G +V LVW HSVRSPI
Sbjct: 683 VRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTP-GKIVSGLLVWKSPRHSVRSPI 741
Query: 718 VVHT 721
V+++
Sbjct: 742 VIYS 745
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024221001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (705 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 726 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-99 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 9e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-23 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-20 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 4e-19 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 4e-18 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-17 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-17 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 7e-17 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-15 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 9e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 5e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 6e-14 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 6e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-12 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 5e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 5e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-10 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 7e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 8e-10 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-09 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-08 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 5e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 9e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 5e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 5e-05 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 9e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-04 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 9e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.001 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.002 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.002 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 0.004 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 2e-99
Identities = 123/236 (52%), Positives = 143/236 (60%), Gaps = 22/236 (9%)
Query: 108 LQFHTTRSWDFMGLNQSITRKHSVESN----IIIGVIDSGIWPESESFSDEGFGPAPKKW 163
Q HTTRS DF+GL + +N IIIGV+D+GIWPE SF+D G GP P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 164 KGACNGGKNFT---CNNKLIGARYY-------------TTDGTARDKDGHGTHTASTAAG 207
G C G++F CNNKLIGARY+ + RD DGHGTHTASTAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNP-SGCASTDILAAFDDAIADGVDIITVS 266
N V +AS G GTA G P ARIA YKVC P GC +DILAA D AIADGVD+I+ S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 267 LGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAAST 322
+GG D +D IAI HA+E GI SAGNSG V +VAPW+ +VAAST
Sbjct: 181 IGGG-SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 9e-33
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 481 LKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPD 540
LKPDI+APGVDILAA +P DP D R ++ SGTSMA PH A VAA +KS HPD
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 541 WSPSAIRSAIMTTAW 555
WSP+AI+SA+MTTA+
Sbjct: 293 WSPAAIKSALMTTAY 307
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGT 190
+ + VID+GI GF GG +F ++ D +
Sbjct: 4 VKVAVIDTGIDYTHPDLGGPGFPND------KVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57
Query: 191 ARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDIL 249
A D GHGTH A AGN V G +G A P A + AYKV P G + I+
Sbjct: 58 AGDATGHGTHVAGIIAGNGVN----VGTIKGVA----PKADLYAYKVLGPGGSGTTDVII 109
Query: 250 AAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV- 308
AA + A+ DG+D+I +SLG ++ DAIAI A++ G++ + +AGNSG +
Sbjct: 110 AAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--AVKAGVVVVAAAGNSGPAPYTIG 167
Query: 309 -YSVAPWLMSVAASTT 323
+ AP ++V AST
Sbjct: 168 SPATAPSAITVGASTV 183
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 457 IKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSI 516
+A V P SSRGP +KPDI APGVDI++ AP S Y+
Sbjct: 184 ADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMST----APGSGT-------GYAR 231
Query: 517 ESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP-MNSSKVNDAEVAFGSGHVN 575
SGTSMA PH A AA +K HPDWSP+ I++A+M TA P +S V G+G V+
Sbjct: 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVD 291
Query: 576 PVKA 579
++A
Sbjct: 292 ALRA 295
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 4e-20
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 38/198 (19%)
Query: 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDK 194
+ + VID+G+ P+ G +GG + N D
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGG---------GDGGNDDDDNEN--------GPTDPDDG 43
Query: 195 DGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFD 253
+GHGTH A A + G G P A++ KV + G +S+DI AA D
Sbjct: 44 NGHGTHVAGIIAASA---------NNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAID 94
Query: 254 DAIAD-GVDIITVSLGG--NIPVDFIKDAIAIGAFHAMEK-GILTLNSAGNSGSNLGFVY 309
A AD G D+I +SLGG + P + +AI +A+ K G+L + +AGN G + G
Sbjct: 95 YAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAAAGNDGPDGGTNI 150
Query: 310 S---VAPWLMSVAASTTD 324
+P +++V A D
Sbjct: 151 GYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 42/197 (21%)
Query: 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARD 193
+ + VID+GI K GG NFT + +D
Sbjct: 1 GVKVAVIDTGIDSSHPDL----------KLNIV--GGANFT----------GDDNNDYQD 38
Query: 194 KDGHGTHTAST--AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILA 250
+GHGTH A A N V G A P A + A KV N G + DI+A
Sbjct: 39 GNGHGTHVAGIIAALDNGV-------GVVGVA----PEADLYAVKVLNDDGSGTYSDIIA 87
Query: 251 AFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
+ AI +G+DII +SLGG +++AI A GIL + +AGNSG+
Sbjct: 88 GIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVVAAAGNSGNGDSSYDY 143
Query: 311 VA--PWLMSVAASTTDR 325
A P +++V A ++
Sbjct: 144 PAKYPSVIAVGAVDSNN 160
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKN--FTCNNKLI----GARYYT 186
++++ VID+G+ ++ W N N + G +
Sbjct: 2 GDVVVAVIDTGV-----DYNHPDL--KDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVN 54
Query: 187 TDGTARDKDGHGTHTAST--AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA 244
D D +GHGTH A A GN G G A G + +I K G
Sbjct: 55 NDNDPMDDNGHGTHVAGIIGAVGNN---------GIGIA-GVAWNVKIMPLKFLGADGSG 104
Query: 245 ST-DILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGS 303
+T D + A D A+ G II S GG P ++DAIA A++ GIL + +AGN G+
Sbjct: 105 TTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGNDGT 160
Query: 304 NLGFV------YSVAPWLMSVAAST-TDRL 326
N Y + ++SVAA+ D L
Sbjct: 161 NNDKTPTYPASYDL-DNIISVAATDSNDAL 189
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 49/241 (20%)
Query: 136 IIGVIDSGIWPESESF-----SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT--- 187
++ VIDSG+ P ++F S + + K G N K+ A Y
Sbjct: 14 VVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND 73
Query: 188 DGTARDKDG-HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKV---CNPSGC 243
D D HG H A AGN ++ + G+ +G A P A++ A KV
Sbjct: 74 DILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA----PEAQLLAMKVFSNPEGGST 128
Query: 244 ASTDILAAFDDAIADGVDIITVSLGGNIPVDFI----KDAIAIGAFHAMEKGILTLNSAG 299
A +DA+ G D+I +SLG F+ + AI A E G++ + +AG
Sbjct: 129 YDDAYAKAIEDAVKLGADVINMSLG--STAGFVDLDDPEQQAIKR--AREAGVVVVVAAG 184
Query: 300 NSGSNLGFVYS-----------------VAPWLMSVAASTTDRLFVDKVLLGNGATLSGY 342
N G++ G S A +++VA++ KV NG +SG+
Sbjct: 185 NDGNS-GSGTSKPLATNNPDTGTVGSPATADDVLTVASANK------KVPNPNGGQMSGF 237
Query: 343 S 343
S
Sbjct: 238 S 238
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+A FS+ G KPDI APG +IL++ D Y SGTSMA
Sbjct: 177 IADFSNYGGPVDGI---KPDIVAPGGNILSSGP-----GGDLGG-----YDSHSGTSMAA 223
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
P A AA + S +P +P +R+ ++TTA + S ++ +FG G +N KAV
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLDR---SFGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-17
Identities = 61/185 (32%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT-----DG 189
+ + V+D+GI + FGP K GG +F +G Y T D
Sbjct: 15 VKVAVVDTGIDYTHPALG-GCFGPGCK-----VAGGYDF------VGDDYDGTNPPVPDD 62
Query: 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTD-I 248
D GHGTH A A N F GV P A + AY+V SG + D I
Sbjct: 63 DPMDCQGHGTHVAGIIAANP-NAYGFTGVA--------PEATLGAYRVFGCSGSTTEDTI 113
Query: 249 LAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV 308
+AAF A DG D+IT SLGG P + +D A+ A ++ G++ +AGN G F
Sbjct: 114 IAAFLRAYEDGADVITASLGG--PSGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPF- 170
Query: 309 YSVAP 313
Y+ +P
Sbjct: 171 YASSP 175
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 7e-17
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 331 VLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVM 390
V LGNG T+ G S+ +K +PLV+ S + + + C PG ++ S VKGKIV+
Sbjct: 2 VTLGNGKTIVGQSLYPGNLK--TYPLVY---KSANSGDVDASLCLPGSLDPSKVKGKIVL 56
Query: 391 CSKFDGYTEVHKV------GAAGSILFNDQ---YEKVSFVVSLPAVAVSMENFNSLISYK 441
C + + V K G AG IL ND + V+ LPAV V E+ +++SY
Sbjct: 57 CDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 442 NSTKKPEAEI 451
NST P A I
Sbjct: 117 NSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 21/90 (23%)
Query: 464 VVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523
A FSS GP +++APGVDIL ST P + Y+ SGTSMA
Sbjct: 161 NRASFSSTGPE--------VELAAPGVDIL---------STYPNND----YAYLSGTSMA 199
Query: 524 CPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
PH A VAA V S P+ + + +R A+ T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-15
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 472 GPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVA 531
P++ + KPD++APGVD+ +A A Y+ SGTSMA PH A VA
Sbjct: 180 APDSPPDEYTKPDVAAPGVDVYSARQ-GANGDGQ--------YTRLSGTSMAAPHVAGVA 230
Query: 532 AYVKSFHPDWSPSAIRSAIMTTAW 555
A + + HPD SP I+ A+ TA+
Sbjct: 231 ALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 9e-15
Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 37/200 (18%)
Query: 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG---TAR 192
+GV+D+GI S + G + D
Sbjct: 1 TVGVLDTGIDVNHPDLSG------------------RYIGLAYRNGYDFVDNDPDPTPDD 42
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
D +GHGTH A A + + GV P+A++ + KV SG +++ A
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVLPGSGGTDSELAGAI 94
Query: 253 DDAI--ADGVDIITVSLGGNI-PVDFIKDAIAIGAFH-AMEKGILTLNSAGNSGSN--LG 306
+ A + + +I +SLG P AI A + A KG L + +AGN G
Sbjct: 95 EWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNN 154
Query: 307 FVYSVAPW--LMSVAASTTD 324
V A +++V A T +
Sbjct: 155 PVSDPASANNIITVGAVTEN 174
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 468 FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHA 527
FSS GP L LKPD++APG +IL ST P Y++ SGTSMA P+
Sbjct: 191 FSSWGPTNEL--YLKPDVAAPGGNIL---------STYPLAGG--GYAVLSGTSMATPYV 237
Query: 528 AAVAA-YVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAF------GSGHVNPVKAV 580
A AA +++ H SP+ +R + +TA P+ S A G+G VN KA+
Sbjct: 238 AGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKAL 297
Query: 581 N 581
Sbjct: 298 Y 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
++ FSSRGP +KPD+ APG +I++ SP +P Y SGTSMA
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSP----GGNPGAGVGSGYFEMSGTSMAT 233
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
PH + A + +P +P ++ + TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 20/89 (22%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FS+ G + D++APGVDIL ST P Y SGTSMA P
Sbjct: 190 ASFSNYGKKTV-------DLAAPGVDIL---------STSPGGG----YGYMSGTSMATP 229
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A AA + S +P+ + + I+ AI+++A
Sbjct: 230 HVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I + V+D+GI F G +F T
Sbjct: 2 KGITVAVLDTGIDAPHPDFD------------GRIIRFADFVN--------TVNGRTTPY 41
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TDILAA 251
D +GHGTH A AG+ + G +G A P A + KV + SG S +DI+A
Sbjct: 42 DDNGHGTHVAGIIAGS---GRASNGKYKGVA----PGANLVGVKVLDDSGSGSESDIIAG 94
Query: 252 FDDAIAD----GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF 307
D + + + ++ +SLG + +D + + GI+ + +AGNSG G
Sbjct: 95 IDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGT 154
Query: 308 VYS--VAPWLMSVAASTTD 324
+ S +P +++V A +
Sbjct: 155 ITSPGNSPKVITVGAVDDN 173
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-14
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 34 VYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKL 93
YIV V SSH E + ++ SY+ FNGFAAKLT+ E +KL
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSKEEAAGAS--ILYSYKHGFNGFAAKLTEEEAEKL 58
Query: 94 ASMEEVVSVFPSRTLQFH 111
+V V P + ++ H
Sbjct: 59 RKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPI 502
++ P + + ++ VA FSSRGP +KPD+ APG IL+A S I
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGI 236
Query: 503 STDPEDKRRVKYSIESGTSMACPHAAAVAA----------YVKSFHPDWSPSAIRSAIMT 552
+ Y+ +SGTSMA P A AA Y F+P S + +++ ++
Sbjct: 237 GDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLIN 290
Query: 553 TA 554
+A
Sbjct: 291 SA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 46/185 (24%), Positives = 60/185 (32%), Gaps = 45/185 (24%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ + +GVIDSGI F+ A +
Sbjct: 3 AGVKVGVIDSGIDLSHPEFAGRVS-----------EASYYV--------AVNDAGYASNG 43
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGC--ASTDIL 249
D D HGTH A A G GV P A + + + +G + DI
Sbjct: 44 DGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASAGSTFSDADIA 93
Query: 250 AAFDDAIADGVDIITVSLGGN------------IPVDFIKDAIAIGAFHAMEKGILTLNS 297
AA+D A GV II S GGN +A A A G L + +
Sbjct: 94 AAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALAR-AANAGGLFVFA 152
Query: 298 AGNSG 302
AGN G
Sbjct: 153 AGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 454 TEAIKDFDAPVVAPFSSRGPNAILPDI-LKPDISAPGVDILAAVSPLAPISTDPEDKRRV 512
+ + + + ++ FSS GP PD+ LKPDI+APG +I + V D
Sbjct: 223 NKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYSTV----------NDN--- 266
Query: 513 KYSIESGTSMACPHAAAVAA----YVKSFHPDWSP----SAIRSAIMTTAWPMNSSKVND 564
Y SGTSMA PH A +A +K +P S +++ +M TA P S+
Sbjct: 267 TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTK 326
Query: 565 AEVA---FGSGHVNPVKAVN 581
+ G+G ++ KA+
Sbjct: 327 TYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 43/215 (20%)
Query: 116 WDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTC 175
W+ + + S + + V+D+G+ P P K G +F
Sbjct: 11 WNLDQIGAPKAWDITGGSGVTVAVVDTGVDPTH-----------PDLLKVKFVLGYDFVD 59
Query: 176 NNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAA 234
N D A D +GHGTH A A GT GV P A+I
Sbjct: 60 N-----------DSDAMDDNGHGTHVAGIIAAA---------TNNGTGVAGVAPKAKIMP 99
Query: 235 YKVCNPSGCASTDILAAFDDAI---AD-GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK 290
KV + +G S +A + I AD G +I +SLGG + +++AI +A K
Sbjct: 100 VKVLDANGSGSLADIA---NGIRYAADKGAKVINLSLGGGLGSTALQEAIN----YAWNK 152
Query: 291 GILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDR 325
G++ + +AGN G + + P ++VAA+ D
Sbjct: 153 GVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 4e-12
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 459 DFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIES 518
D D +P S+ G DI+APG DIL++ + Y+ S
Sbjct: 166 DRDGTPASPSSNGGA--------GVDIAAPGGDILSSPTTGGG-----------GYATLS 206
Query: 519 GTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
GTSMA P A VAA + S +PD +P+ +++A+++T
Sbjct: 207 GTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 57/227 (25%), Positives = 85/227 (37%), Gaps = 33/227 (14%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN--KLIGARYYTTDGT 190
I+GV D+G+ F D F N T K++ RY + T
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNF---------------NKTNLFHRKIV--RYDSLSDT 49
Query: 191 ARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS--TDI 248
D DGHGTH A AG +G P A++ + + SG S D+
Sbjct: 50 KDDVDGHGTHVAGIIAGK-----GNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDL 104
Query: 249 LAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV 308
F G I + S G + + A A F IL + SAGN G++ G
Sbjct: 105 NKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGND-GSN 163
Query: 309 YSVAPW----LMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKG 351
+P +++V AS V G G + + ++ SF+ +G
Sbjct: 164 TIGSPATAKNVLTVGASNNPS--VSNGEGGLGQSDNSDTVASFSSRG 208
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 36/76 (47%), Positives = 42/76 (55%), Gaps = 15/76 (19%)
Query: 464 VVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523
V+A FSSRGP +KPDISAPGV+I +AV P Y SGTSMA
Sbjct: 186 VLADFSSRGP--STYGRIKPDISAPGVNIRSAV---------PGGG----YGSSSGTSMA 230
Query: 524 CPHAAAVAAYVKSFHP 539
PH A VAA + S +P
Sbjct: 231 APHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FS+ G D+SAPG IL ST P+ Y+ SGTSMA P
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGIL---------STTPDGD----YAYMSGTSMATP 228
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A VAA + S P S S +R A+ TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 20/151 (13%)
Query: 153 DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKD 212
D G G +F N ++ + D GHGTH + T G K
Sbjct: 8 DTGVDADHPDLAGRVAQWADFDENRRISATEVF-------DAGGHGTHVSGTIGGGGAK- 59
Query: 213 ASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGN-I 271
GV G A P A + KV + G + + I+A + A+ D++++SLGG
Sbjct: 60 ----GVYIGVA----PEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYY 111
Query: 272 PVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
D +++ A+ A + G L + SAGN G
Sbjct: 112 SEDPLEE--AVEALSN-QTGALFVVSAGNEG 139
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 52/183 (28%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIG--ARYYTTDGTA 191
+ + VIDSGI P+ + + KN G A
Sbjct: 1 KVTVAVIDSGIDPDHPDLKNS-----------ISSYSKNLVPKGGYDGKEAGETGDINDI 49
Query: 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA-STDILA 250
DK GHGT A A N G +G P I +Y+V G A S+ I+
Sbjct: 50 VDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVFGSCGSAESSWIIK 97
Query: 251 AFDDAIADGVDIITVSLGG--NIPVDFIKDAIAIGAF-----HAMEKGILTLNSAGNSGS 303
A DA DGVD+I +SLGG I ++ D + A+ +A KG + + +AGN G
Sbjct: 98 AIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGL 157
Query: 304 NLG 306
++
Sbjct: 158 DVS 160
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
DI APGVDIL S + SGTSMA PH A +AAY+ S PD SP
Sbjct: 194 DIFAPGVDIL---------SAWIGSDT--ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 544 SAIRSAIMTTA 554
+ +++ ++ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 33/191 (17%)
Query: 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDK 194
+++ +ID+G+ S + + G + + + D
Sbjct: 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNNDPTSDI 39
Query: 195 DGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA-STDILAAFD 253
DGHGT A AA G G A G P A++ ++ + G A +DI A
Sbjct: 40 DGHGTACAGVAAAVG-------NNGLGVA-GVAPGAKLMPVRIADSLGYAYWSDIAQAIT 91
Query: 254 DAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM--EKGILTLNSAGNSGSNLGFVYSV 311
A +G D+I+ S GG+ + I AI A KG + L +AGNSG ++ Y+
Sbjct: 92 WAADNGADVISNSWGGSDSTESISSAID-NAATYGRNGKGGVVLFAAGNSGRSVSSGYAA 150
Query: 312 APWLMSVAAST 322
P +++VAA+
Sbjct: 151 NPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 459 DFDAPVVAPFSSRGPNAIL---PDIL-KPDISAP-GVDILAAVSPLAPISTDPEDKRRVK 513
D SS P I P++ KPD++AP GV+ + D +
Sbjct: 163 GSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVN--------GTVDGDGDGPPNF- 213
Query: 514 YSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGH 573
GTS A PHAA VAA V S +P +P+ IR A+ +TA M ++ A GSG
Sbjct: 214 ----FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGYDN---ASGSGL 266
Query: 574 VNPVKAV 580
V+ +AV
Sbjct: 267 VDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 8e-10
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 53/174 (30%)
Query: 139 VIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198
V+D+GI F G A W G +F D +GHG
Sbjct: 31 VLDTGIRTTHVEFG----GRA--IW------GADFV------------GGDPDSDCNGHG 66
Query: 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAAFDDAIA 257
TH A T G YGV A+ A + A KV + +G + I+A +
Sbjct: 67 THVAGTVGGKT------YGV----AKK----ANLVAVKVLDCNGSGTLSGIIAGLEWVAN 112
Query: 258 DGVD-----IITVSLGG--NIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN 304
D + +SLGG + +D A+A A+ G++ + +AGNS +
Sbjct: 113 DATKRGKPAVANMSLGGGASTALD---AAVA----AAVNAGVVVVVAAGNSNQD 159
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 15/68 (22%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+A FS RGP +KPDI+APGV+IL A Y+ SGTS+A
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASP-------------GGGYTTRSGTSVAA 403
Query: 525 PHAAAVAA 532
A A
Sbjct: 404 AIVAGACA 411
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 176 NNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAY 235
+ I + + +D GHGTH A T G +V YGV ARG A IA
Sbjct: 27 AGRDITTKSFVGGEDVQDGHGHGTHCAGTIFGRDV-PGPRYGV----ARG----AEIALI 77
Query: 236 -KVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIP 272
KV G ILA A+A+G D+I++SLG + P
Sbjct: 78 GKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFP 115
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 38/209 (18%)
Query: 132 ESNIIIGVIDSGI---WPESE-SFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT 187
II+ V+D+G+ P+ + + +G+ PA G NF N I
Sbjct: 9 GPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA--------VNGYNFVPNVGDI------- 53
Query: 188 DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST 246
D GHGTH A T A + + GVG GGV P +I + ++
Sbjct: 54 DNDVSVGGGHGTHVAGTIAA---VNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGD 110
Query: 247 D-ILAAFDDAIADGVDIITVSLGGNIPVDF---IKDAIAIGAFHAME-------KGILTL 295
D + AA A +G I+ S GG + +KDA + +E G + +
Sbjct: 111 DAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFD----YFIENAGGSPLDGGIVV 166
Query: 296 NSAGNSGSNLGFVYSVAPWLMSVAASTTD 324
SAGNS ++ + P +++VAA T+
Sbjct: 167 FSAGNSYTDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
+ FS GP D++APG +I +S P + SGTS A P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENI---------VSLSP---GGDGLATTSGTSFAAP 230
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
+ AA V+S PD + + +R I TA +D G G V+PV A+
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATADHPARGGRDD---YVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 25/121 (20%)
Query: 439 SYKNSTKKPEAEILKTEAI-----KDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDIL 493
++ N K E K ++ +VA FS+ G + D+ APG I
Sbjct: 190 NFPNDYDKNGGEPANNFITVGASSKKYENNLVANFSNYGKKNV-------DVFAPGERIY 242
Query: 494 AAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
ST P+++ Y +SGTSMA P + VAA + S++P+ + ++ I+ +
Sbjct: 243 ---------STTPDNE----YETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILES 289
Query: 554 A 554
Sbjct: 290 G 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILA-AVSPLAPIS--TDPEDKRRVKYSIESGTSM 522
A +S+ GP D+SAPG D + P S Y GTSM
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGST-YGFLQGTSM 254
Query: 523 ACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
A PH A VAA +KS +P +P+ I S + +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 29/154 (18%)
Query: 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAA 251
D +GHGTHT T GN+ G G G P AR A + + +G D L
Sbjct: 49 YDDNGHGTHTMGTMVGND---------GDGQQIGVAPGARWIACRALDRNGGNDADYLRC 99
Query: 252 FDDAIA----DGV--------DIITVSLGGNIPVDF-IKDAIAIGAFHAMEKGILTLNSA 298
+A G D+I S GG + ++ A+A A+ A GI + +A
Sbjct: 100 AQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA--AWRA--AGIFPVFAA 155
Query: 299 GNSGSNLGFVYSVA---PWLMSVAASTTDRLFVD 329
GN G + + P +V A+ + + D
Sbjct: 156 GNDGPRCSTLNAPPANYPESFAVGATDRNDVLAD 189
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 464 VVAPFSSRGPNAILPD-ILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSM 522
A FSS GP A D LKPD+ A G I + +GTS
Sbjct: 185 NKASFSSIGPTA---DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSF 228
Query: 523 ACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
+CP A + A + HP+W+ I+ AI+ +A
Sbjct: 229 SCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 483 PDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532
DI+APGVDI++A Y SGTSMA PH A VAA
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAA 249
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGT 520
+ VA FS+ G DI+APGV+IL L+ ++T P D Y SGT
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNIL----SLSAVNTLPGDG--ADYVTLSGT 361
Query: 521 SMACPHAAAVAAYVKSFHP-DWSPSAIRSAIMTTA 554
SMA PH + VAA V S +P + +P+ +R+ I+TTA
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 71/270 (26%), Positives = 91/270 (33%), Gaps = 81/270 (30%)
Query: 135 IIIGVIDSGIWPESESF--SDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I I VID+G F E F G +F N+ TD
Sbjct: 2 ITIAVIDAG-------FPKVHEAFAFKHLFKNLRILGEYDFVDNS----NNTNYTD---- 46
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDI---- 248
D HGT ST AG GV GTA A+Y + A T+
Sbjct: 47 --DDHGTAVLSTMAGYTP------GVMVGTAPN-------ASYYL------ARTEDVASE 85
Query: 249 --------LAAFDDAIADGVDIITVSLGGNIPVDFIKDA-----------IAIGAFHAME 289
+AA + A + GVDII+ SLG + I+ A A
Sbjct: 86 TPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAAS 145
Query: 290 KGILTLNSAGNSGSNLGFVYSV---APWLMSVAASTTD---------------RLFVDKV 331
KG+L +NSAGN GS A ++SV A + RL D +
Sbjct: 146 KGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVM 205
Query: 332 LLGNGATLSGYSINSFAMKGKKF--PLVHG 359
LG G + N G F PL+ G
Sbjct: 206 ALGTGIYVINGDGNITYANGTSFSCPLIAG 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A +S+ G D+ APGV I D Y SGTS A P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI----WTTGTGRGSAGDYPGGGYGSFSGTSFASP 214
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTT 553
AA VAA + S +P+ +P+ + + +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVD-ILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523
A FS+ G DI+APGV IL+ V L Y SGTSMA
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGGN-------YEYLSGTSMA 242
Query: 524 CPHAAAVAAYVKSFHPDW-SPSAIRSAIMTT 553
PH + VAA V S PD +P IR + +
Sbjct: 243 APHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
D +APGVD+ A AP Y SGTS A P A A + P P
Sbjct: 168 DFAAPGVDVWVA----APGG---------GYRYVSGTSFAAPFVTAALALLLQASPLA-P 213
Query: 544 SAIRSAIMTTA 554
R+ + TA
Sbjct: 214 DDARARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 186 TTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKV-------- 237
+ DGT D DGHGT A AG + F GV P ARI +
Sbjct: 43 SGDGTD-DCDGHGTLVAGIIAGRPGEGDGFSGVA--------PDARILPIRQTSAAFEPD 93
Query: 238 CNPSGCASTDILA-AFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAF--HAMEKGILT 294
SG LA A A G D+I +SL +P D +GA +A++KG++
Sbjct: 94 EGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVV 153
Query: 295 LNSAGNSGS--NLGFVYSVAPWLMSVAASTTDR 325
+ +AGN+G V A + +A + DR
Sbjct: 154 VAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDR 186
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 485 ISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPS 544
++APG +I + Y SGTS A PH + AA + P +
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 545 AIRSAIMTTA 554
+R ++TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 49/211 (23%), Positives = 72/211 (34%), Gaps = 55/211 (26%)
Query: 134 NIIIGVIDSGIWPESESF---------------SDEGFGPAPKKWKGACNGGKNFTCNNK 178
+++G+ID+GI F + G P + G N
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGE--YTEEIINAA 62
Query: 179 LIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVC 238
L Y +RD++GHGTH A AAGN + F GV P A + K+
Sbjct: 63 LASDNPYDI-VPSRDENGHGTHVAGIAAGNGDNNPDFKGV--------APEAELIVVKLK 113
Query: 239 NPSG-----------CASTDILAAFD--DAIADGVD---IITVSLG-------GNIPVDF 275
TDI+ A A ++ +I +SLG G ++
Sbjct: 114 QAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGTSLLER 173
Query: 276 IKDAIAIGAFHAMEKGILTLNSAGNSGSNLG 306
DAI+ GI + AGN G+
Sbjct: 174 YIDAISRLR------GIAVVVGAGNEGNTQH 198
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 54/245 (22%), Positives = 84/245 (34%), Gaps = 46/245 (18%)
Query: 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARD 193
++I ++D+G+ +S K + +Y D
Sbjct: 3 GVVIAIVDTGV-----DYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFY---VIMYD 54
Query: 194 KDGHGTHTASTAAGNEVKDASFYGV-GQGTARGGVPSARIAAYK------VCNPSGCAST 246
HGT AS AAG + + YG G+ RG P A+IAA K V
Sbjct: 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWL---- 110
Query: 247 DILAAFDDAIADG---------VDIITVSLGGNIPVDFIKDAIAIGA--------FHAME 289
A FD VD+I+ S G + +F A G
Sbjct: 111 -WTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS---NFAYTGYAPGLDISSLVIDALVTY 166
Query: 290 KGILTLNSAGNSGSNLGFVYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS-INS 346
G+ +++AGN G G + + A +SV A+T F + G G + S
Sbjct: 167 TGVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT---NFDYRPFYLFGYLPGGSGDVVS 223
Query: 347 FAMKG 351
++ +G
Sbjct: 224 WSSRG 228
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 467 PFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIE-------SG 519
+S GP P +KPD+ A G ++ A P + S G
Sbjct: 200 ATTSSGPG--SPGPIKPDVVAFGGNL--AYDPSGNAADGDLSLLTTLSSPSGGGFVTVGG 255
Query: 520 TSMACPHAAAVAAYVKSFHPDWSPSAIR 547
TS A P AA +AA + + P+ SP IR
Sbjct: 256 TSFAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (96), Expect = 0.002
Identities = 45/209 (21%), Positives = 71/209 (33%), Gaps = 39/209 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ + VID+G+ + G+ G +F + +
Sbjct: 142 KGVTVAVIDTGV------------DASHPDLAGSAVAGGDFVDGD---------PEPPFL 180
Query: 193 DKDGHGTHTASTAAGNEVK-DASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST--DIL 249
D +GHGTH A T A A GV P A++ KV G + D+
Sbjct: 181 DDNGHGTHVAGTIAAVIFDNGAGVAGVA--------PGAKLLLVKVLGSGGGSGELSDVA 232
Query: 250 AAFDDAIADG--VDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN--- 304
+ A G D+I +SLGG++ A A G++ + +AGN GSN
Sbjct: 233 EGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASG 292
Query: 305 --LGFVYSVAPWLMSVAASTTDRLFVDKV 331
L + S + + V
Sbjct: 293 GDLAYPASYPAPNVIAVGALDLSDTVASF 321
|
Length = 508 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 47/171 (27%)
Query: 137 IGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDG 196
+G+ID+GI + S +L A +A
Sbjct: 3 VGMIDTGIDTAHPALS-----------------AVVIA---RLFFAGPGAPAPSA----- 37
Query: 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARI-----AAYKVCNPSGCASTDILAA 251
HGT AS AG G R G+ + G ++ + A
Sbjct: 38 HGTAVASLLAGA------------GAQRPGLLPGADLYGADVFGRAGGGEGASALALARA 85
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
D GV ++ +SL G P + A+A A +G++ + +AGN G
Sbjct: 86 LDWLAEQGVRVVNISLAGP-PNALLAAAVAA----AAARGMVLVAAAGNDG 131
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
V +SSRGP+ KPD++A G A L + + GTSMA
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDG---NEAFDLFGGTSMAT 275
Query: 525 PHAAAVAAYV-----KSFHPD-WSPSAIRSAIMTTA 554
P A AA V + + P +R+ +M+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 485 ISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPS 544
++APG +I ST P++ Y +GTSMA PH AA+A+ + S +P S
Sbjct: 534 LAAPGTNI---------YSTFPKNS----YRKLNGTSMAAPHVAAIASLILSINPSLSYE 580
Query: 545 AI----RSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIK 595
+ + +I+ N +V +G G+++ AVN + + + + K
Sbjct: 581 EVIRILKESIVQLPSLKN-------KVKWG-GYLDIHHAVNLAIASKHGRTEIAK 627
|
Length = 639 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 185 YTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA 244
+T + T D GHGT A A + + F P A I ++V + +
Sbjct: 35 WTNEKTLDDGLGHGTFVAGVIASSREQCLGF-----------APDAEIYIFRVFTNNQVS 83
Query: 245 STD-ILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSG 302
T L AF+ AI +D++ +S+GG DF+ + I+ +++ GN G
Sbjct: 84 YTSWFLDAFNYAILTKIDVLNLSIGGP---DFMDKPFVDKVWELTANNIIMVSAIGNDG 139
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 42/193 (21%)
Query: 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARD 193
I I ++D + F P AC G
Sbjct: 11 RITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGG---------------------- 48
Query: 194 KDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVC--NPSGCASTDILAA 251
HGTH AS G + G P R + + GC+ D+ A
Sbjct: 49 ASAHGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARA 98
Query: 252 FDDAIADGVDIITVSLG----GNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF 307
+ A+ G II +S G + +A+A+ + +L + +AGN G
Sbjct: 99 INLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAAGNEGCACLH 154
Query: 308 VYSVAPWLMSVAA 320
V + P +++V A
Sbjct: 155 VPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.9 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.74 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.14 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.98 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.84 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.55 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.19 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.17 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.06 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.05 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.97 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.94 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.89 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.8 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.72 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.72 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.7 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.63 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.51 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.4 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.38 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.27 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.25 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 97.14 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 95.87 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 94.29 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 93.97 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 92.15 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 91.39 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 87.34 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 86.72 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 85.89 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 84.87 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 81.72 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=449.07 Aligned_cols=285 Identities=59% Similarity=0.925 Sum_probs=249.3
Q ss_pred eccccCCCccccccchhhccC-----CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCccc---CCcee
Q 040462 108 LQFHTTRSWDFMGLNQSITRK-----HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKL 179 (726)
Q Consensus 108 ~~~~~~~s~~~~g~~~~~w~~-----~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~---~n~kl 179 (726)
++++++++|.|++++ .+|+. +.+|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. ||+|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 468899999999999 66664 8899999999999999999999999989999999999999888874 99999
Q ss_pred eeeeecCC-------------CCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-CCCH
Q 040462 180 IGARYYTT-------------DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-GCAS 245 (726)
Q Consensus 180 ig~~~~~~-------------~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g~~~ 245 (726)
++.++|.+ ..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999853 345678899999999999999877766677777778999999999999999984 4889
Q ss_pred HHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCc
Q 040462 246 TDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDR 325 (726)
Q Consensus 246 ~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~ 325 (726)
+++++||++|++++++|||||||... ...+.+.+..+++.+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~-~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGS-PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999873 24566788888889999999999999999988888889999999999742
Q ss_pred ceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCc
Q 040462 326 LFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGA 405 (726)
Q Consensus 326 ~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga 405 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCce
Q 040462 406 AGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDI 485 (726)
Q Consensus 406 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI 485 (726)
+||||
T Consensus 236 ---------------------------------------------------------------------------~~~di 240 (307)
T cd04852 236 ---------------------------------------------------------------------------LKPDI 240 (307)
T ss_pred ---------------------------------------------------------------------------Cccce
Confidence 46799
Q ss_pred EeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 486 SAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 486 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
+|||++|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 241 ~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 241 AAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999987531 1111223457999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=447.19 Aligned_cols=295 Identities=23% Similarity=0.244 Sum_probs=217.2
Q ss_pred CCccc--cccchhhcc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCccc--CCc----eeeeee
Q 040462 114 RSWDF--MGLNQSITR--KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT--CNN----KLIGAR 183 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~--~n~----klig~~ 183 (726)
.+|.+ ++++ .+|+ .+.+|+||+|||||||||++||+|.++-.. -+... .|.++. +++ .+.|..
T Consensus 294 ~qWgLd~i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el-----~GrdgiDdD~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKEL-----HGRKGIDDDNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccc-----cCccccccccCCccccccccc
Confidence 44544 3455 5666 356899999999999999999999865211 00001 111110 111 112222
Q ss_pred ecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeE
Q 040462 184 YYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDI 262 (726)
Q Consensus 184 ~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdV 262 (726)
+.++...|.|..||||||||||||...++ .| +.||||+|+|+++|+++..| +..+++++||+||++.|++|
T Consensus 367 fVd~~~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~V 438 (639)
T PTZ00262 367 FVNNDGGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHM 438 (639)
T ss_pred ccCCCCCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCE
Confidence 22345678899999999999999974321 12 38999999999999998877 88999999999999999999
Q ss_pred EEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----CCCceEEEeeeccC
Q 040462 263 ITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF--------------VYS----VAPWLMSVAASTTD 324 (726)
Q Consensus 263 In~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA~~~~ 324 (726)
||||||... ....+..++.+|.++|++||+||||+|..... +++ ..|++|+|||++.+
T Consensus 439 INmSlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d 514 (639)
T PTZ00262 439 INGSFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKD 514 (639)
T ss_pred EEeccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCC
Confidence 999999762 33467778889999999999999999864321 222 24678888886433
Q ss_pred cceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcC
Q 040462 325 RLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVG 404 (726)
Q Consensus 325 ~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G 404 (726)
..
T Consensus 515 ~~------------------------------------------------------------------------------ 516 (639)
T PTZ00262 515 KN------------------------------------------------------------------------------ 516 (639)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred ceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCc
Q 040462 405 AAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPD 484 (726)
Q Consensus 405 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPD 484 (726)
.....+.||++|.. ++|
T Consensus 517 --------------------------------------------------------~~~s~s~~Snyg~~-------~VD 533 (639)
T PTZ00262 517 --------------------------------------------------------NQYSLSPNSFYSAK-------YCQ 533 (639)
T ss_pred --------------------------------------------------------CcccccccccCCCC-------cce
Confidence 00123455666522 349
Q ss_pred eEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCC
Q 040462 485 ISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVND 564 (726)
Q Consensus 485 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~ 564 (726)
|+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++++|+++|++||.++...
T Consensus 534 IaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~---- 596 (639)
T PTZ00262 534 LAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL---- 596 (639)
T ss_pred EEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC----
Confidence 999999999998754 799999999999999999999999999999999999999999987542
Q ss_pred CCCcCCC-CccCccccCCCcccc
Q 040462 565 AEVAFGS-GHVNPVKAVNPGLIY 586 (726)
Q Consensus 565 ~~~~~G~-G~vn~~~A~~~glv~ 586 (726)
+..+|| |+||+++|++..+-+
T Consensus 597 -~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCccccCcEEcHHHHHHHHHhc
Confidence 233343 899999999866554
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=408.47 Aligned_cols=243 Identities=25% Similarity=0.325 Sum_probs=201.4
Q ss_pred ccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcc
Q 040462 126 TRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTA 205 (726)
Q Consensus 126 w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgia 205 (726)
|+.+++|+||+|||||||||.+||+|.+.. ...+ |.+.....|..||||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------~~~~------------~~~~~~~~d~~gHGT~VAGiI 55 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------ERTN------------WTNEKTLDDGLGHGTFVAGVI 55 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------cccc------------cCCCCCCCCCCCcHHHHHHHH
Confidence 889999999999999999999999997420 0111 112335567889999999999
Q ss_pred ccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHH
Q 040462 206 AGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGA 284 (726)
Q Consensus 206 ag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~ 284 (726)
+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||+++++||||||||... +...++..++
T Consensus 56 a~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~~~~ 121 (255)
T cd07479 56 ASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFVDKV 121 (255)
T ss_pred HccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHHHHH
Confidence 99731 138999999999999998876 67788999999999999999999999762 2345666677
Q ss_pred HHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCC
Q 040462 285 FHAMEKGILTLNSAGNSGSNLGF--VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEV 362 (726)
Q Consensus 285 ~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 362 (726)
.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 122 ~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------------- 163 (255)
T cd07479 122 WELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------------------------- 163 (255)
T ss_pred HHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------------------------
Confidence 78889999999999999975433 46678899999987543
Q ss_pred CCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHh
Q 040462 363 SESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 363 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEeeeeeecCCCCCcccccCCCCCCCC----CCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecc
Q 040462 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAI----LPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIES 518 (726)
Q Consensus 443 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 518 (726)
+.++.|||+|++.. ..+++||||.|||.+|+++.... .|..++
T Consensus 164 --------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~s 210 (255)
T cd07479 164 --------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALS 210 (255)
T ss_pred --------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEec
Confidence 45688999997532 26788999999999999876543 688999
Q ss_pred cccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 040462 519 GTSMACPHAAAVAAYVKSFHP----DWSPSAIRSAIMTTAWPMN 558 (726)
Q Consensus 519 GTSmAaP~VAG~aALl~~~~P----~~sp~~Ik~~L~~TA~~i~ 558 (726)
|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 211 GTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 211 GTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999999999999998 7999999999999999875
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=408.95 Aligned_cols=271 Identities=27% Similarity=0.241 Sum_probs=206.6
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccC
Q 040462 129 HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGN 208 (726)
Q Consensus 129 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~ 208 (726)
+++|+||+|+|||||||..||++.+..-+..+..+.. ++ ......|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~---------~~----------~~~~~~d~~gHGT~vAgii~-- 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV---------LG----------DLDGGSGGGDEGRAMLEIIH-- 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee---------cc----------ccCCCCCCCchHHHHHHHHh--
Confidence 5789999999999999999986543321212221110 00 02345688999999999984
Q ss_pred cCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHH
Q 040462 209 EVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288 (726)
Q Consensus 209 ~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~ 288 (726)
||||+|+|+.+|+. ...+++++||+|++++|++|||||||......+.+..+..++.++.
T Consensus 60 ----------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~ 119 (275)
T cd05562 60 ----------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVV 119 (275)
T ss_pred ----------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHH
Confidence 57999999999875 4588999999999999999999999986333334456788888888
Q ss_pred hC-CcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCC
Q 040462 289 EK-GILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESC 366 (726)
Q Consensus 289 ~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (726)
++ |++||+||||+|+... ..+...|++|+|||++.+.........+.
T Consensus 120 ~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~------------------------------- 168 (275)
T cd05562 120 ASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP------------------------------- 168 (275)
T ss_pred HcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc-------------------------------
Confidence 87 9999999999998643 34678999999999875532100000000
Q ss_pred CcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 367 PEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 367 ~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCc-cEEeecCCCCCCCCCCCCccccceeecccccchhH
Q 040462 447 PEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGV-DILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525 (726)
Q Consensus 447 ~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 525 (726)
.......+.||+|||+. +..+||||+|||. ++.+.+.. ..|..++|||||||
T Consensus 169 ------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP 221 (275)
T cd05562 169 ------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAP 221 (275)
T ss_pred ------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHH
Confidence 00002345688899987 7889999999975 44444332 37899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 526 ~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 222 ~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 222 HAAGVAALVLSANPGLTPADIRDALRSTALDMGE---PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC---CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999998764 2356789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=411.29 Aligned_cols=285 Identities=26% Similarity=0.204 Sum_probs=192.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCC--CCCCCCCCCCcchhhhccccCc
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT--DGTARDKDGHGTHTASTAAGNE 209 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~--~~~~~D~~gHGThVAgiaag~~ 209 (726)
|+||+|+|||||||++||+|.++... .|.. .|.+...++...++.+ ...+.|++||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccC
Confidence 89999999999999999999754210 0100 0101111111111111 1356899999999999999986
Q ss_pred CCCCcccccc-CcceeecccCceEEEEEeeCCCC-CCHHHHHH-------HHHHH--HhCCCeEEEeccCCCCCC----C
Q 040462 210 VKDASFYGVG-QGTARGGVPSARIAAYKVCNPSG-CASTDILA-------AFDDA--IADGVDIITVSLGGNIPV----D 274 (726)
Q Consensus 210 ~~~~~~~G~~-~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~A--~~~gvdVIn~S~G~~~~~----~ 274 (726)
..+.+.+++. ...+.||||+|+|+.+|+++..+ +....+.+ +++|. .+++++|||||||..... .
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 4333322211 12359999999999999997543 33333333 33333 367999999999975211 0
Q ss_pred ccccHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCC
Q 040462 275 FIKDAIAIGAFHA-MEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKG 351 (726)
Q Consensus 275 ~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~ 351 (726)
...+..+...+.+ .++|+++|+||||+|+... ..+..++++|+|||++..+..+.+
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------------- 209 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY--------------------- 209 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh---------------------
Confidence 1122333333332 3899999999999998643 356688999999998643210000
Q ss_pred ceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeeh
Q 040462 352 KKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSM 431 (726)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 431 (726)
.+..
T Consensus 210 ---~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 210 ---LFGY------------------------------------------------------------------------- 213 (311)
T ss_pred ---hhcc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccc
Q 040462 432 ENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRR 511 (726)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 511 (726)
.....+.++.||||||+. ++++||||+|||++|+++.+...... .....
T Consensus 214 --------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~ 262 (311)
T cd07497 214 --------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDGN 262 (311)
T ss_pred --------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCCC
Confidence 001225689999999998 89999999999999999876542100 01122
Q ss_pred cceeecccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 040462 512 VKYSIESGTSMACPHAAAVAAYVKSFHP------DWSPSAIRSAIMTTA 554 (726)
Q Consensus 512 ~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~sp~~Ik~~L~~TA 554 (726)
..|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 263 ~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 263 EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 4799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=419.56 Aligned_cols=306 Identities=29% Similarity=0.367 Sum_probs=237.0
Q ss_pred hhccCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----CccccccCCCcccCCceeeeeeecCC-CCC---CCC
Q 040462 124 SITRKHS-VESNIIIGVIDSGIWPESESFSDEGFGPAPK-----KWKGACNGGKNFTCNNKLIGARYYTT-DGT---ARD 193 (726)
Q Consensus 124 ~~w~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~f~~n~klig~~~~~~-~~~---~~D 193 (726)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+...+.++|++..++|.+ ... ..|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999998764332211 22333344445567888888887742 222 347
Q ss_pred CCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCC--CC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 194 KDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNP--SG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 194 ~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ +....+++|++++++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999854321 1223499999999999999974 33 7888999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------cccCCCceEEEeeeccCcceeeEEEeC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF----------------VYSVAPWLMSVAASTTDRLFVDKVLLG 334 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~p~vitVgA~~~~~~~~~~~~~g 334 (726)
.........+..++.++.++|++||+||||+|..... .+...+++|+||+....-
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~--------- 226 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV--------- 226 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc---------
Confidence 4443556778888889999999999999999865432 123456677777654110
Q ss_pred CCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecC
Q 040462 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQ 414 (726)
Q Consensus 335 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~ 414 (726)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEe
Q 040462 415 YEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILA 494 (726)
Q Consensus 415 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~s 494 (726)
.......++.||+|||+. ..++||||+|||.+|++
T Consensus 227 -------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s 261 (346)
T cd07475 227 -------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYS 261 (346)
T ss_pred -------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEE
Confidence 001225678999999998 88999999999999999
Q ss_pred ecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCC---CCC
Q 040462 495 AVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF----HPDWSPSA----IRSAIMTTAWPMNSS---KVN 563 (726)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~----Ik~~L~~TA~~i~~~---~~~ 563 (726)
+.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+.... ...
T Consensus 262 ~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~ 328 (346)
T cd07475 262 TVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTY 328 (346)
T ss_pred ecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCCCCcc
Confidence 87653 6889999999999999999999998 79999877 788999999964332 223
Q ss_pred CCCCcCCCCccCccccCC
Q 040462 564 DAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 564 ~~~~~~G~G~vn~~~A~~ 581 (726)
..+..+|+|+||+.+|++
T Consensus 329 ~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 329 YSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccccCcchhcHHHhhC
Confidence 467789999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=424.49 Aligned_cols=397 Identities=22% Similarity=0.242 Sum_probs=256.9
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCCccccccCCCcccCCceeeeeeecC--------------CCCCCCCC
Q 040462 130 SVESNIIIGVIDSGIWPESESFSD-EGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT--------------TDGTARDK 194 (726)
Q Consensus 130 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~--------------~~~~~~D~ 194 (726)
.+|+||+|||||||||+.||+|.+ +|-+++...|+.....+... ....+...+. +.....|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999984 46678888887766543221 1111111111 12345789
Q ss_pred CCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-----------CCHHHHHHHHHHHHhC-----
Q 040462 195 DGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-----------CASTDILAAFDDAIAD----- 258 (726)
Q Consensus 195 ~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~A~~~----- 258 (726)
.||||||||||||+..++ ..+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 999999999999985432 2248999999999999998764 5688999999999874
Q ss_pred CCeEEEeccCCCCCCCccccHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccC-CCceEEEeeeccCcceeeEEEeCCC
Q 040462 259 GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK-GILTLNSAGNSGSNLGFVYSV-APWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 259 gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
.++|||||||...+++...++++.++..+.++ |++||+||||+|....+.... .+. ...-.-.+.++.+
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~---------~~~~~ie~~v~~~ 220 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPN---------GETKTVELNVGEG 220 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccC---------CceEEEEEEECCC
Confidence 47899999999877777888999888888766 999999999999854443321 000 0000011222222
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCC-C------------cCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhc
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESC-P------------EFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKV 403 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~-~------------~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~ 403 (726)
.......++......-...++......... . ......|... ..+....|.-.+.-+ . .-...
T Consensus 221 ~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y-~~~~~~~g~~~i~i~---~-~~~~~ 295 (455)
T cd07478 221 EKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYY-YLPEPYTGDQLIFIR---F-KNIKP 295 (455)
T ss_pred CcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEE-cCCCCCCCCeEEEEE---c-cCCCc
Confidence 221112222221111112222211100000 0 0000000000 011112222211111 1 12344
Q ss_pred CceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEee----eeeec--CCCCCcccccCCCCCCCCC
Q 040462 404 GAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILK----TEAIK--DFDAPVVAPFSSRGPNAIL 477 (726)
Q Consensus 404 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~----~~~~~--~~~~~~~a~fSs~GP~~~~ 477 (726)
|.+-+.+.........+..++|.-.+..++. .++++....+.+++. ...++ +.....++.||||||+.
T Consensus 296 GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 296 GIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred cceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 6677777777666667778888766554432 233444444554411 11222 22345699999999998
Q ss_pred CCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHH
Q 040462 478 PDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFH------PDWSPSAIRSAIM 551 (726)
Q Consensus 478 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~sp~~Ik~~L~ 551 (726)
++++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 8999999999999999998854 79999999999999999999999975 5679999999999
Q ss_pred hccccCCCCCCCCCCCcCCCC
Q 040462 552 TTAWPMNSSKVNDAEVAFGSG 572 (726)
Q Consensus 552 ~TA~~i~~~~~~~~~~~~G~G 572 (726)
+||+++... +.++..||||
T Consensus 437 ~tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred HhCccCCCC--CCCCCCCCCC
Confidence 999988642 3467889998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=403.03 Aligned_cols=290 Identities=33% Similarity=0.454 Sum_probs=227.9
Q ss_pred ccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcc
Q 040462 120 GLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGT 199 (726)
Q Consensus 120 g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGT 199 (726)
|++ .+|+.+.+|+||+|||||+|||++||+|.++ +.+... ...+.+|..++ ........+...+.|..+|||
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~~~~-----~~~~~d~~~~~-~~~~~~~~~~~~~~d~~gHGT 72 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGPGCK-----VAGGYDFVGDD-YDGTNPPVPDDDPMDCQGHGT 72 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCCCce-----eccccccCCcc-cccccCCCCCCCCCCCCCcHH
Confidence 355 7999999999999999999999999999864 111100 11122221110 000011112346678899999
Q ss_pred hhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCcccc
Q 040462 200 HTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKD 278 (726)
Q Consensus 200 hVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~ 278 (726)
||||||++...+ .| +.||||+|+|+.+|+++..+ ...+.+++++++|++++++|||+|||... .+..+
T Consensus 73 ~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~~~~~ 141 (312)
T cd07489 73 HVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWSED 141 (312)
T ss_pred HHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--CCCCC
Confidence 999999998532 22 38999999999999998666 77888999999999999999999999872 33447
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 279 AIAIGAFHAMEKGILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 279 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 142 ~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------------- 188 (312)
T cd07489 142 PWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------------- 188 (312)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------------
Confidence 7777888899999999999999987542 3356778999998753
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
+.||++||+. +...||||+|||++++++++... ..|.
T Consensus 189 ------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~ 225 (312)
T cd07489 189 ------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYA 225 (312)
T ss_pred ------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceE
Confidence 3578999988 78899999999999999877641 2589
Q ss_pred ecccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCC------CCCCCcCCCCccCccccCCCcc
Q 040462 516 IESGTSMACPHAAAVAAYVKSFH-PDWSPSAIRSAIMTTAWPMNSSKV------NDAEVAFGSGHVNPVKAVNPGL 584 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~-P~~sp~~Ik~~L~~TA~~i~~~~~------~~~~~~~G~G~vn~~~A~~~gl 584 (726)
.++|||||||+|||++|||+|++ |.+++.+||++|++||.++..... ..+...+|||+||+.+|++..-
T Consensus 226 ~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 226 VLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred eeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCc
Confidence 99999999999999999999999 999999999999999998654311 2355789999999999999543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=391.69 Aligned_cols=248 Identities=25% Similarity=0.299 Sum_probs=207.1
Q ss_pred hccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhc
Q 040462 125 ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAST 204 (726)
Q Consensus 125 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgi 204 (726)
+|..+++|+||+|||||+|||++||+|.+..+.+....|. ......|..+|||||||+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~----------------------~~~~~~~~~gHGT~VAgi 59 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAA----------------------AACQDGGASAHGTHVASL 59 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccc----------------------cCCCCCCCCCcHHHHHHH
Confidence 6999999999999999999999999998753322111110 123456788999999999
Q ss_pred cccCcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHH
Q 040462 205 AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAI 282 (726)
Q Consensus 205 aag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~ 282 (726)
|+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||...........+..
T Consensus 60 i~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~ 129 (267)
T cd07476 60 IFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILAN 129 (267)
T ss_pred HhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHH
Confidence 9987421 248999999999999987654 5578999999999999999999999976433445567888
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCC
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEV 362 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 362 (726)
++.+|.++|+++|+||||+|.....++...|++|+|||++.+
T Consensus 130 a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------------- 171 (267)
T cd07476 130 AVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------------------- 171 (267)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------------------
Confidence 888999999999999999998877788899999999987533
Q ss_pred CCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHh
Q 040462 363 SESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 363 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccc
Q 040462 443 STKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSM 522 (726)
Q Consensus 443 ~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 522 (726)
+.++.||++|+.. .||||+|||.+|+++.+.+ .|..++||||
T Consensus 172 --------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~ 213 (267)
T cd07476 172 --------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSF 213 (267)
T ss_pred --------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHH
Confidence 2346789999754 3889999999999987754 6999999999
Q ss_pred hhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCCC
Q 040462 523 ACPHAAAVAAYVKSFHPD----WSPSAIRSAIMTTAWPMNSS 560 (726)
Q Consensus 523 AaP~VAG~aALl~~~~P~----~sp~~Ik~~L~~TA~~i~~~ 560 (726)
|||||||++|||+|++|. ++|++||++|++||+++.+.
T Consensus 214 AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 214 AAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999887 99999999999999998764
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=387.70 Aligned_cols=286 Identities=38% Similarity=0.558 Sum_probs=214.1
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecC----CCCCCCCCCCCcchhhhcccc
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT----TDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~----~~~~~~D~~gHGThVAgiaag 207 (726)
|+||+|||||+||+++||+|.+..+. . .....+++|..++.-....... ......|..+|||||||+|+|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag 74 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFP-N-----DKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAG 74 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCC-C-----CceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhc
Confidence 89999999999999999999854210 0 0011122221111000000000 012244689999999999998
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFH 286 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~ 286 (726)
...+ ...+.||||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||... ....+.+..++.+
T Consensus 75 ~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~~~~~~~~~~~~~ 144 (295)
T cd07474 75 NGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--NGPDDPDAIAINN 144 (295)
T ss_pred CCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCHHHHHHHH
Confidence 7532 12348999999999999998554 88899999999999999999999999862 2245677888889
Q ss_pred HHhCCcEEEEecCCCCCCCCcc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 287 AMEKGILTLNSAGNSGSNLGFV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 287 a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
+.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 145 ~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------------------- 186 (295)
T cd07474 145 AVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------------------- 186 (295)
T ss_pred HHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------------------
Confidence 9999999999999998765544 567899999999752200
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCC-CCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccch
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSR-GPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 523 (726)
........|+++ |++. ...+||||+|||++|++++... ...|..++|||||
T Consensus 187 ---------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~A 238 (295)
T cd07474 187 ---------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMA 238 (295)
T ss_pred ---------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHH
Confidence 000223344444 5554 7889999999999999988753 1378999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCC-CCCCCcCCCCccCcccc
Q 040462 524 CPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKV-NDAEVAFGSGHVNPVKA 579 (726)
Q Consensus 524 aP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~-~~~~~~~G~G~vn~~~A 579 (726)
||+|||++|||+|++|+|++++||++|++||+++..... ...+..+|+|+||+.+|
T Consensus 239 aP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 239 APHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 999999999999999999999999999999998876422 22457899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=377.91 Aligned_cols=234 Identities=26% Similarity=0.396 Sum_probs=194.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|||||||||++||+|.++-. .. +++. .....|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~------------~~------------~~~~-~~~~~~~~~HGT~vAgiia~~~~~--- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI------------AR------------LFFA-GPGAPAPSAHGTAVASLLAGAGAQ--- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc------------cc------------ccCC-CCCCCCCCCCHHHHHHHHhCCCCC---
Confidence 7899999999999999975411 01 0111 124567899999999999997421
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC----CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhC
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG----CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK 290 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~ 290 (726)
. .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||.. ....++.++.++.++
T Consensus 53 -------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~a~~~ 119 (239)
T cd05561 53 -------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAAAAAR 119 (239)
T ss_pred -------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHHHHHC
Confidence 1 6999999999999998642 6788999999999999999999999975 235677778899999
Q ss_pred CcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcC
Q 040462 291 GILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEF 369 (726)
Q Consensus 291 Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 369 (726)
|++||+||||+|+.. ..++...+++|+|++++.+
T Consensus 120 gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~--------------------------------------------- 154 (239)
T cd05561 120 GMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR--------------------------------------------- 154 (239)
T ss_pred CCEEEEecCCCCCCCCccCcccCCCceEEEeecCC---------------------------------------------
Confidence 999999999999764 3567788999999986533
Q ss_pred CCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeE
Q 040462 370 SSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEA 449 (726)
Q Consensus 370 ~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~ 449 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHH
Q 040462 450 EILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAA 529 (726)
Q Consensus 450 ~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 529 (726)
+.++.||++|+.. ||.|||++|+++.+.+ .|..++|||||||||||
T Consensus 155 -------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG 200 (239)
T cd05561 155 -------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTA 200 (239)
T ss_pred -------------CCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHH
Confidence 3457799999976 9999999999876543 69999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCC
Q 040462 530 VAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSG 572 (726)
Q Consensus 530 ~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G 572 (726)
++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 201 ~aAll~~~~p-~~~~~i~~~L~~ta~~~g~---~~~d~~~G~G 239 (239)
T cd05561 201 ALALLLQASP-LAPDDARARLAATAKDLGP---PGRDPVFGYG 239 (239)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHhhccCC---CCcCCCcCCC
Confidence 9999999999 9999999999999998755 3467789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=388.09 Aligned_cols=258 Identities=26% Similarity=0.389 Sum_probs=192.6
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCC---CCC-----CCcccc--ccCCCccc---CCceeeeeeecC---------CCCC
Q 040462 133 SNIIIGVIDSGIWPESESFSDEGFG---PAP-----KKWKGA--CNGGKNFT---CNNKLIGARYYT---------TDGT 190 (726)
Q Consensus 133 ~gV~VgVIDtGid~~Hp~f~~~g~~---~~~-----~~~~g~--~~~g~~f~---~n~klig~~~~~---------~~~~ 190 (726)
|+|+|||||||||++||+|.++.+. +.| ...+|. ...|++|. +.+++++...++ ....
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 6899999999999999999875221 011 111121 12455553 233344333221 1234
Q ss_pred CCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 191 ARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 191 ~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
+.|..+|||||||||++...++ .| +.||||+|+|+.+|++........++++||+||+++|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 4568999999999999975321 12 389999999999999865446788999999999999999999999975
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEEeeeccCcceeeEEEeCCCceE
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF---VY--------SVAPWLMSVAASTTDRLFVDKVLLGNGATL 339 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~g~g~~~ 339 (726)
. ......+..++..|.++|+++|+||||+|.+... ++ ...+++|+||+++...
T Consensus 153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-------------- 216 (291)
T cd07483 153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-------------- 216 (291)
T ss_pred C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--------------
Confidence 2 1223456777778999999999999999865321 11 1346778887764331
Q ss_pred eeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCce
Q 040462 340 SGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVS 419 (726)
Q Consensus 340 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 419 (726)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCC
Q 040462 420 FVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPL 499 (726)
Q Consensus 420 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 499 (726)
....++.||++|+. +|||.|||++|+++.+.+
T Consensus 217 -----------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~ 248 (291)
T cd07483 217 -----------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTPDN 248 (291)
T ss_pred -----------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccCcC
Confidence 01246889999974 359999999999987654
Q ss_pred CCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 500 APISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 500 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 249 -------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 249 -------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=378.08 Aligned_cols=242 Identities=32% Similarity=0.377 Sum_probs=196.2
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCC-CCCC-CCCCCCcchhhhccccCcCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT-DGTA-RDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~-~~~~-~D~~gHGThVAgiaag~~~~ 211 (726)
||+||||||||+++||+|..... .++.++++.++|.+ ...+ .|..+|||||||+|+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999953210 12345555565532 2233 6789999999999999742
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC---CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCc-----------cc
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG---CASTDILAAFDDAIADGVDIITVSLGGNIPVDF-----------IK 277 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~-----------~~ 277 (726)
+...||||+|+|+.+|+..... ....+++.|++++.+.|++|||||||....... ..
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2348999999999999876432 456678999999999999999999997632111 12
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCcee
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSN---LGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKF 354 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~ 354 (726)
..+..++..+.++|+++|+||||+|.. ...++...+++|+|||.+.+
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 183 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------------ 183 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------------------------
Confidence 457778888999999999999999987 34567788999999986533
Q ss_pred eEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhH
Q 040462 355 PLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENF 434 (726)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~ 434 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccce
Q 040462 435 NSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
+.++.||++||+. ++++||||+|||.+|++.... ..|
T Consensus 184 ----------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~ 220 (261)
T cd07493 184 ----------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNI 220 (261)
T ss_pred ----------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcE
Confidence 3567899999987 889999999999999985443 368
Q ss_pred eecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 515 SIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 221 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 221 TYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=388.59 Aligned_cols=220 Identities=27% Similarity=0.312 Sum_probs=166.7
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C--CCHHHHHHHHHHHHhCCCeEEEeccC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G--CASTDILAAFDDAIADGVDIITVSLG 268 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~gvdVIn~S~G 268 (726)
.|+.+|||||||||||+..+ .+.+.||||+|+|+.+|+++.. + +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998432 1234899999999999998754 2 34467999999999999999999999
Q ss_pred CCCCCCccccHHHHHHHH-HHhCCcEEEEecCCCCCCCCccc--c-CCCceEEEeeeccCcceeeEEEeCCCceEeeeee
Q 040462 269 GNIPVDFIKDAIAIGAFH-AMEKGILTLNSAGNSGSNLGFVY--S-VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSI 344 (726)
Q Consensus 269 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~ 344 (726)
....... ...+..++.+ +.++||++|+||||+|+...++. . ..+++|+|||+...........+
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~----------- 321 (412)
T cd04857 254 EATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL----------- 321 (412)
T ss_pred cCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-----------
Confidence 8732221 1233334433 44789999999999998776643 2 46899999997533211000000
Q ss_pred ccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeee
Q 040462 345 NSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSL 424 (726)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 424 (726)
.
T Consensus 322 ------------~------------------------------------------------------------------- 322 (412)
T cd04857 322 ------------R------------------------------------------------------------------- 322 (412)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred eEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCC
Q 040462 425 PAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIST 504 (726)
Q Consensus 425 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 504 (726)
....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 323 ----------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~----- 361 (412)
T cd04857 323 ----------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT----- 361 (412)
T ss_pred ----------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC-----
Confidence 01125678999999998 9999999999999998752111
Q ss_pred CCCCccccceeecccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 040462 505 DPEDKRRVKYSIESGTSMACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 505 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~i 557 (726)
...|..|+|||||||||||++|||++ .+|+|+|.+||.+|++||+++
T Consensus 362 ------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 13689999999999999999999975 479999999999999999874
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=374.48 Aligned_cols=247 Identities=32% Similarity=0.389 Sum_probs=196.8
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
|+||+|||||+||+++||+|.+. +.+ .+.+.....+++.+ .......+.|..+|||||||||+|....
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~~~---~~~~~~~~~~~~~d--------~~~~~~~~~d~~~HGT~vagii~g~~~~ 68 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-YRG---WGGGSADHDYNWFD--------PVGNTPLPYDDNGHGTHTMGTMVGNDGD 68 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-ccc---cCCCCccccccccc--------CCCCCCCCCCCCCchhhhhhheeecCCC
Confidence 89999999999999999999865 110 00010111111000 0011345678899999999999987421
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh------------CCCeEEEeccCCCCCCCccccH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA------------DGVDIITVSLGGNIPVDFIKDA 279 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~------------~gvdVIn~S~G~~~~~~~~~~~ 279 (726)
+...||||+|+|+.+|+++..+++..+++++++++++ .|++|||||||.... ....
T Consensus 69 ---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~~~~ 136 (264)
T cd07481 69 ---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---DNEW 136 (264)
T ss_pred ---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---CchH
Confidence 1128999999999999998877888999999999975 789999999998722 3345
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeE
Q 040462 280 IAIGAFHAMEKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPL 356 (726)
Q Consensus 280 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l 356 (726)
+..++..+.++|++||+||||++..... ++...|++|+||+.+.+
T Consensus 137 ~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------- 184 (264)
T cd07481 137 LQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN-------------------------------- 184 (264)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC--------------------------------
Confidence 5666668889999999999999876433 56788999999986543
Q ss_pred EecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHH
Q 040462 357 VHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNS 436 (726)
Q Consensus 357 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~ 436 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceee
Q 040462 437 LISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSI 516 (726)
Q Consensus 437 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 516 (726)
+.++.||++||.. .+.+||||+|||.+|+++++.+ .|..
T Consensus 185 --------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~ 223 (264)
T cd07481 185 --------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGS 223 (264)
T ss_pred --------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEe
Confidence 4567899999987 6899999999999999998764 6899
Q ss_pred cccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 040462 517 ESGTSMACPHAAAVAAYVKSFHPD--WSPSAIRSAIMTTAW 555 (726)
Q Consensus 517 ~sGTSmAaP~VAG~aALl~~~~P~--~sp~~Ik~~L~~TA~ 555 (726)
++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 224 ~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 224 SSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.84 Aligned_cols=257 Identities=28% Similarity=0.419 Sum_probs=207.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
|+||+|+|||+||+++||+|.+.... .+ ++... ........|..+|||||||+|+|....
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~--------~~~~~--------~~~~~~~~d~~~HGT~vAgiiag~~~~ 60 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FA--------DFVNT--------VNGRTTPYDDNGHGTHVAGIIAGSGRA 60 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cc--------ccccc--------ccCCCCCCCCCCchHHHHHHHhcCCcc
Confidence 89999999999999999999875211 01 11000 012346677889999999999998532
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC----CCeEEEeccCCCCCCCccccHHHHHHHH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD----GVDIITVSLGGNIPVDFIKDAIAIGAFH 286 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~----gvdVIn~S~G~~~~~~~~~~~~~~a~~~ 286 (726)
. .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||+|||.........+.+..++.+
T Consensus 61 ~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~ 133 (264)
T cd07487 61 S-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVER 133 (264)
T ss_pred c-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHH
Confidence 1 22349999999999999998876 7888999999999998 9999999999884445677888899999
Q ss_pred HHhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 287 AMEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 287 a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
+.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 134 ~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------- 175 (264)
T cd07487 134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------------------------- 175 (264)
T ss_pred HHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------------------
Confidence 99999999999999998775 55678899999999765521
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchh
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 524 (726)
....++.||++||+. ++++||||+|||++|+++.+..... .......|..++||||||
T Consensus 176 ----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 ----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred ----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHH
Confidence 002468899999998 8999999999999999986543111 112235789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 525 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
|+|||++|||+|++|.+++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=373.29 Aligned_cols=263 Identities=30% Similarity=0.346 Sum_probs=202.6
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|..+.+|+||+|+|||||||++||+|.+........ .+.....+..+. -+......|..||||||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~gHGT~VAg 69 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYD----PAVNGYNFVPNV-------GDIDNDVSVGGGHGTHVAG 69 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcc----cccCCccccccc-------CCcCCCCCCCCCCHHHHHH
Confidence 37999999999999999999999999998761110000 001111111000 0012345678899999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAI 282 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~ 282 (726)
||+++.......-|.+ .+.|+||+|+|+.+|++...+ +...+++++|+++++.|++|||||||.. ....+...+..
T Consensus 70 iia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~-~~~~~~~~~~~ 146 (273)
T cd07485 70 TIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGT-GGGIYSPLLKD 146 (273)
T ss_pred HHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCC-CccccCHHHHH
Confidence 9999753322111111 236799999999999998765 7888999999999999999999999987 22334556777
Q ss_pred HHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 283 GAFHAMEK-------GILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 283 a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
++..+.++ |++||+||||++......+...|++|+||+++.+
T Consensus 147 a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------------- 195 (273)
T cd07485 147 AFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------------- 195 (273)
T ss_pred HHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-------------------------------
Confidence 77788887 9999999999998877778889999999997543
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCc-cEEeecCCCCCCCCCCCCccccce
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGV-DILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
+.++.||++|+.. ||.|||+ .|+++++.... .....|
T Consensus 196 ---------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~ 233 (273)
T cd07485 196 ---------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNY 233 (273)
T ss_pred ---------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCe
Confidence 3457899999987 9999999 89888764311 112478
Q ss_pred eecccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 040462 515 SIESGTSMACPHAAAVAAYVKSFHPD-WSPSAIRSAIMTT 553 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~~P~-~sp~~Ik~~L~~T 553 (726)
..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 234 ~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 234 EYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.30 Aligned_cols=248 Identities=33% Similarity=0.439 Sum_probs=206.3
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++++ .+|+.+ +|+||+|+|||+||+++||+|....+ ..+.++ .++...+
T Consensus 9 ~~w~~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------~~~~~~-----------~~~~~~~ 64 (260)
T cd07484 9 YQWNLDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------VLGYDF-----------VDNDSDA 64 (260)
T ss_pred cCCCccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccCCc-----------ccceec-----------cCCCCCC
Confidence 45544 4555 899988 99999999999999999999843311 111111 1223456
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..+|||||||||++....+ ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||+|||..
T Consensus 65 ~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~ 136 (260)
T cd07484 65 MDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG 136 (260)
T ss_pred CCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 788999999999999874221 1238999999999999998765 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3 3456777777889999999999999999888889999999999997544
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
+..+.||++|+.. |+.|||.+|++..+..
T Consensus 187 --------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~----------- 215 (260)
T cd07484 187 --------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG----------- 215 (260)
T ss_pred --------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-----------
Confidence 3457889999876 9999999999887653
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i 557 (726)
.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 216 --~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 --DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred --CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 799999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=367.62 Aligned_cols=326 Identities=24% Similarity=0.310 Sum_probs=255.6
Q ss_pred cCCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhc------CCCCCC------------cEEEeec---ceeeEEEEEeCH
Q 040462 29 YDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVE------GSSVGD------------VLVRSYR---RSFNGFAAKLTD 87 (726)
Q Consensus 29 ~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------------~v~~~y~---~~~~g~s~~l~~ 87 (726)
+..+..|||.+++... .+..+.|.+++....+. .++.-. .+.+.|. .+|+|+.-..+.
T Consensus 77 ~~~~~~YiV~f~~~~~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~ 155 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDAS-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTG 155 (501)
T ss_pred cccccceEEEeCCCcc-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccc
Confidence 4567899999995544 34455555555443221 111101 1344443 378888899999
Q ss_pred HHHHHHHcCCCeEEEEeCceecc--------ccCCCccccccch------hhcc----CCCCCCCcEEEEEcccCCCCCC
Q 040462 88 LERQKLASMEEVVSVFPSRTLQF--------HTTRSWDFMGLNQ------SITR----KHSVESNIIIGVIDSGIWPESE 149 (726)
Q Consensus 88 ~~~~~L~~~p~V~~v~~~~~~~~--------~~~~s~~~~g~~~------~~w~----~~~~G~gV~VgVIDtGid~~Hp 149 (726)
+-+..++++|-++.++++...+. +...+|.+..+.. ..|- +...|+||...|+||||+.+||
T Consensus 156 ~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~ 235 (501)
T KOG1153|consen 156 ESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHP 235 (501)
T ss_pred ceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccc
Confidence 99999999999999998877654 4445676655543 1121 2348999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccC
Q 040462 150 SFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPS 229 (726)
Q Consensus 150 ~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~ 229 (726)
+|.++ +.| |..+.. .....|++||||||||+|++.. -|||.+
T Consensus 236 dFegR------a~w------Ga~i~~------------~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~ 277 (501)
T KOG1153|consen 236 DFEGR------AIW------GATIPP------------KDGDEDCNGHGTHVAGLIGSKT--------------FGVAKN 277 (501)
T ss_pred ccccc------eec------ccccCC------------CCcccccCCCcceeeeeeeccc--------------cccccc
Confidence 99976 222 222211 2345689999999999999985 789999
Q ss_pred ceEEEEEeeCCCC-CCHHHHHHHHHHHHhC---------CCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecC
Q 040462 230 ARIAAYKVCNPSG-CASTDILAAFDDAIAD---------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAG 299 (726)
Q Consensus 230 A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~---------gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 299 (726)
++|+++||++++| +..+++++++|++++. +..|.|||+|+. ..-+++.|++.|.+.||++++|||
T Consensus 278 s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAG 352 (501)
T KOG1153|consen 278 SNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAG 352 (501)
T ss_pred cceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCC
Confidence 9999999999998 9999999999999986 578999999997 345788888899999999999999
Q ss_pred CCCCCCCcc-ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCC
Q 040462 300 NSGSNLGFV-YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGC 378 (726)
Q Consensus 300 N~g~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~ 378 (726)
|+..+.+.. |+.+..+|||||++..
T Consensus 353 Ne~eDAC~~SPass~~aITVGAst~~------------------------------------------------------ 378 (501)
T KOG1153|consen 353 NEHEDACNSSPASSKKAITVGASTKN------------------------------------------------------ 378 (501)
T ss_pred CcchhhhccCcccccccEEecccccc------------------------------------------------------
Confidence 999887654 5688999999998655
Q ss_pred CCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeec
Q 040462 379 INSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIK 458 (726)
Q Consensus 379 ~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~ 458 (726)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhC
Q 040462 459 DFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFH 538 (726)
Q Consensus 459 ~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 538 (726)
+.++.||+||++. ||-|||++|+|.|.+.. ..-.++||||||+|||||++|..++++
T Consensus 379 ----D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~ 435 (501)
T KOG1153|consen 379 ----DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLG 435 (501)
T ss_pred ----cchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcC
Confidence 5789999999999 99999999999998762 356789999999999999999999999
Q ss_pred CC---------CCHHHHHHHHHhccc
Q 040462 539 PD---------WSPSAIRSAIMTTAW 555 (726)
Q Consensus 539 P~---------~sp~~Ik~~L~~TA~ 555 (726)
|. .||.++|..+..-..
T Consensus 436 ~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 436 PLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred CCChHHhhhccCChHHhhhhhhcccc
Confidence 83 388899888876543
|
|
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=361.80 Aligned_cols=232 Identities=32% Similarity=0.447 Sum_probs=196.7
Q ss_pred hccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhc
Q 040462 125 ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAST 204 (726)
Q Consensus 125 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgi 204 (726)
.|..+++|+||+|+|||+||+++||+|.++ ...+. .+.......|..+||||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------~~~~~------------~~~~~~~~~d~~~HGT~vAgi 72 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------AIWGA------------DFVGGDPDSDCNGHGTHVAGT 72 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------eeeee------------ecCCCCCCCCCCccHHHHHHH
Confidence 677789999999999999999999999764 11111 221223367889999999999
Q ss_pred cccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC-----CCeEEEeccCCCCCCCcccc
Q 040462 205 AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD-----GVDIITVSLGGNIPVDFIKD 278 (726)
Q Consensus 205 aag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-----gvdVIn~S~G~~~~~~~~~~ 278 (726)
|+++. .||||+|+|+.+|+++..+ ...+++++++++++++ +++|||+|||... ..
T Consensus 73 ia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-----~~ 133 (255)
T cd04077 73 VGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-----ST 133 (255)
T ss_pred HHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----CH
Confidence 99863 7899999999999998875 7788999999999987 4899999999872 45
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEE
Q 040462 279 AIAIGAFHAMEKGILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLV 357 (726)
Q Consensus 279 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~ 357 (726)
.+..++.++.++|+++|+||||+|.+. ...+...|++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------------------- 180 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------------------- 180 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------------------------
Confidence 677777889999999999999999876 4556788999999997644
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHH
Q 040462 358 HGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSL 437 (726)
Q Consensus 358 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l 437 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeec
Q 040462 438 ISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIE 517 (726)
Q Consensus 438 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 517 (726)
+..+.||++||.. ||+|||.+|.++.... ...|..+
T Consensus 181 -------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~ 216 (255)
T cd04077 181 -------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATL 216 (255)
T ss_pred -------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEee
Confidence 3457899999987 9999999999887642 2478999
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 040462 518 SGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP 556 (726)
Q Consensus 518 sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 556 (726)
+|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 217 ~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 217 SGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=367.25 Aligned_cols=257 Identities=24% Similarity=0.336 Sum_probs=189.4
Q ss_pred cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCC
Q 040462 117 DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDG 196 (726)
Q Consensus 117 ~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~g 196 (726)
+.+++. .+|+.+.+|+||+||||||||+..|| |...++. +...... .......|..|
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~~~~~~--------------~~~~~~~D~~g 62 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VRVVLAP--------------GATDPACDENG 62 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ceeecCC--------------CCCCCCCCCCC
Confidence 356666 89999999999999999999999998 7654221 1100000 01234568889
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC--
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD-- 274 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-- 274 (726)
||||||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||......
T Consensus 63 HGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 121 (298)
T cd07494 63 HGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGT 121 (298)
T ss_pred cchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCccc
Confidence 999998754 57899999999999864 5678999999999999999999999863211
Q ss_pred -------ccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccC
Q 040462 275 -------FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSF 347 (726)
Q Consensus 275 -------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~ 347 (726)
.....++.++.+|.++|++||+||||++. .+++..|++|+|||++.+.. +..
T Consensus 122 ~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------- 180 (298)
T cd07494 122 SWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------- 180 (298)
T ss_pred ccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------
Confidence 12345778888999999999999999974 56889999999999865420 000
Q ss_pred CCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEE
Q 040462 348 AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAV 427 (726)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~ 427 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCce----------------EeCCcc
Q 040462 428 AVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDI----------------SAPGVD 491 (726)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI----------------~APG~~ 491 (726)
......+.|+++ ..+++.|||+ +|||..
T Consensus 181 --------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~ 224 (298)
T cd07494 181 --------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQ 224 (298)
T ss_pred --------------------------------cccccccCcccc----cCCCCccCccccccCcCCcccccccccCCCcc
Confidence 000000112111 1256667776 479999
Q ss_pred EEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 040462 492 ILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNS 559 (726)
Q Consensus 492 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~ 559 (726)
|.++..... . .......|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 225 i~~~~~~~~-~----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 225 LDRSCAAFP-D----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred eeccccCCC-C----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 876553210 0 01122479999999999999999999999999999999999999999998866
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=371.80 Aligned_cols=263 Identities=26% Similarity=0.278 Sum_probs=188.7
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCcc
Q 040462 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASF 215 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~ 215 (726)
+|||||||||.+||+|.+.- .....+ +. ....+.|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~------------~~~~~~-~~----------~~~~~~d~~gHGT~vAgiia~~~~~---- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL------------AEDDLD-SD----------EPGWTADDLGHGTAVAGLALYGDLT---- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh------------cccccc-cc----------CCCCcCCCCCChHHHHHHHHcCccc----
Confidence 79999999999999997641 000000 00 0112678999999999999976422
Q ss_pred ccccCcceeecccCceEEEEEeeCCCC-----CCHHHHHHHHHHHHhCC---CeEEEeccCCCCCCCcc-ccHHHHHHHH
Q 040462 216 YGVGQGTARGGVPSARIAAYKVCNPSG-----CASTDILAAFDDAIADG---VDIITVSLGGNIPVDFI-KDAIAIGAFH 286 (726)
Q Consensus 216 ~G~~~G~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---vdVIn~S~G~~~~~~~~-~~~~~~a~~~ 286 (726)
.....|+||+++|+.+|++...| .+..++++||+|+++.+ ++|||||||........ ...+..++++
T Consensus 55 ----~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~ 130 (291)
T cd04847 55 ----LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQ 130 (291)
T ss_pred ----CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHH
Confidence 11238999999999999998863 56788999999999853 59999999987322111 1244545543
Q ss_pred -HHhCCcEEEEecCCCCCCCCc------------cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCce
Q 040462 287 -AMEKGILTLNSAGNSGSNLGF------------VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKK 353 (726)
Q Consensus 287 -a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~ 353 (726)
+.++|++||+||||+|..... .+..++++|+|||++.+.........+
T Consensus 131 ~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~------------------- 191 (291)
T cd04847 131 LAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARYS------------------- 191 (291)
T ss_pred HhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccccc-------------------
Confidence 568999999999999987643 245678999999987663211000000
Q ss_pred eeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhh
Q 040462 354 FPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMEN 433 (726)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 433 (726)
T Consensus 192 -------------------------------------------------------------------------------- 191 (291)
T cd04847 192 -------------------------------------------------------------------------------- 191 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCC-----CCCCC
Q 040462 434 FNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIS-----TDPED 508 (726)
Q Consensus 434 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~-----~~~~~ 508 (726)
.......+.||+|||.. ++.+||||+|||++|.++........ .....
T Consensus 192 -------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd04847 192 -------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSS 244 (291)
T ss_pred -------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccC
Confidence 00001233499999998 99999999999999987654221000 00011
Q ss_pred ccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 509 KRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 509 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.....|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 245 ~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 22357999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=362.81 Aligned_cols=277 Identities=28% Similarity=0.358 Sum_probs=204.1
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 128 KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 128 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
++++|+||+|||||+|||++||+|.+... .+.+ ..++++.....+.+ ...|..+|||||||||+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~--~~~d~~~HGT~vAgiia~ 66 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSD--TKDDVDGHGTHVAGIIAG 66 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCC--CCCCCCCCcchhheeecc
Confidence 57899999999999999999999976421 1112 23445554444422 223889999999999999
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAF 285 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~ 285 (726)
+....... ..+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||+|||..... .......++.
T Consensus 67 ~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~~~~ 139 (293)
T cd04842 67 KGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLARAYD 139 (293)
T ss_pred CCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHHHHH
Confidence 85432211 1249999999999999998765 5677789999999999999999999987321 1223333333
Q ss_pred HHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecC
Q 040462 286 HAM-E-KGILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGK 360 (726)
Q Consensus 286 ~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~ 360 (726)
.+. + +|+++|+||||+|.... ..+...+++|+|||++.......
T Consensus 140 ~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------- 188 (293)
T cd04842 140 QFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------- 188 (293)
T ss_pred HHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------------------
Confidence 333 3 89999999999998765 56778999999999876531100
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHH
Q 040462 361 EVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISY 440 (726)
Q Consensus 361 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 440 (726)
..|..
T Consensus 189 -----------~~~~~---------------------------------------------------------------- 193 (293)
T cd04842 189 -----------EGGLG---------------------------------------------------------------- 193 (293)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred HhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccc
Q 040462 441 KNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGT 520 (726)
Q Consensus 441 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 520 (726)
.......++.||++||+. .+++||||+|||++|+++..... .........|..++||
T Consensus 194 -----------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GT 250 (293)
T cd04842 194 -----------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKSGT 250 (293)
T ss_pred -----------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecCcH
Confidence 001125689999999987 88999999999999999875420 0011223578999999
Q ss_pred cchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 040462 521 SMACPHAAAVAAYVKSFH-----P---DWSPSAIRSAIMTTAW 555 (726)
Q Consensus 521 SmAaP~VAG~aALl~~~~-----P---~~sp~~Ik~~L~~TA~ 555 (726)
|||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 251 S~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 251 SMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999999999985 4 6777899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=356.56 Aligned_cols=253 Identities=30% Similarity=0.389 Sum_probs=189.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||+|||++||+|.+.-. ...+|..++ ........|..+|||||||||+++..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~------------~~~~~~~~~-------~~~~~~~~d~~~HGT~vAgiia~~~~--- 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA------------QWADFDENR-------RISATEVFDAGGHGTHVSGTIGGGGA--- 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC------------CceeccCCC-------CCCCCCCCCCCCcHHHHHHHHhcCCC---
Confidence 79999999999999999986411 111111100 01134556788999999999999853
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHh-CCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAME-KGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~-~Gi 292 (726)
.+...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||..... .+.+..++....+ +|+
T Consensus 59 ------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~~~g~ 129 (254)
T cd07490 59 ------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSNQTGA 129 (254)
T ss_pred ------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHHcCCC
Confidence 223489999999999999988778899999999999999999999999987321 4556655555554 699
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
+||+||||+|......+...+++|+|||++.+.........+
T Consensus 130 lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g-------------------------------------- 171 (254)
T cd07490 130 LFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFG-------------------------------------- 171 (254)
T ss_pred EEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCc--------------------------------------
Confidence 999999999988777888999999999986552110000000
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (254)
T cd07490 172 -------------------------------------------------------------------------------- 171 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
......++++|.. .....||||.|||.+|+++.... .....|..++|||||||+|||++|
T Consensus 172 ----------~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~aA 231 (254)
T cd07490 172 ----------SSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGVAA 231 (254)
T ss_pred ----------ccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHHHH
Confidence 0112223334433 25568999999999999875321 112479999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|++|+|++.+||++|++||+
T Consensus 232 l~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 232 LLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=361.17 Aligned_cols=250 Identities=27% Similarity=0.334 Sum_probs=191.8
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCc----------------------eeeeeeecCCCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN----------------------KLIGARYYTTDGTA 191 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~----------------------klig~~~~~~~~~~ 191 (726)
||+|+|||||||++||+|.+.- ..+++|..+. +.. ..........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~------------~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVL------------LPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV-PPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcc------------ccCcccccCcccccCCCCCCCCCCCcccccccccc-cccccccCCC
Confidence 7999999999999999998752 1222221110 000 0000012334
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHH----------hCCCe
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAI----------ADGVD 261 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~----------~~gvd 261 (726)
.|..+|||||||||+|...+ ..| +.||||+|+|+.+|+++..+...+++++|++|++ .++++
T Consensus 68 ~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 68 SPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 56789999999999998532 112 2899999999999999887778899999999998 46789
Q ss_pred EEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEe
Q 040462 262 IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLS 340 (726)
Q Consensus 262 VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~ 340 (726)
|||||||.... ....+..++..+.++|++||+||||++.+. ..++...+++|+||+++.+
T Consensus 140 Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 200 (285)
T cd07496 140 VINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------- 200 (285)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------
Confidence 99999998722 145677778899999999999999999876 5677888999999987544
Q ss_pred eeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCcee
Q 040462 341 GYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSF 420 (726)
Q Consensus 341 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 420 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCC
Q 040462 421 VVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLA 500 (726)
Q Consensus 421 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 500 (726)
+.++.||++||.. ||.|||++|.+......
T Consensus 201 ------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~ 230 (285)
T cd07496 201 ------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDG 230 (285)
T ss_pred ------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCc
Confidence 4567899999987 99999999998865432
Q ss_pred CCC--CCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 040462 501 PIS--TDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 501 ~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 231 YPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 110 00111223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=353.59 Aligned_cols=240 Identities=30% Similarity=0.421 Sum_probs=193.7
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|||||+||+++||+|.+.. . ...+.++. .+...+.|..+|||||||||+|+..++
T Consensus 1 V~VaviDsGi~~~hp~l~~~~--~--------~~~~~~~~-----------~~~~~~~~~~~HGT~vAgiiag~~~~~-- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP--K--------LVPGWNFV-----------SNNDPTSDIDGHGTACAGVAAAVGNNG-- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc--C--------ccCCcccc-----------CCCCCCCCCCCCHHHHHHHHHhccCCC--
Confidence 789999999999999998730 0 11111211 112345788999999999999975321
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHh-CCc
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAME-KGI 292 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~-~Gi 292 (726)
..+.||||+|+|+.+|+++..+ +...++.++++++++.+++|||||||...........+..++..+.+ +|+
T Consensus 58 ------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gv 131 (242)
T cd07498 58 ------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGG 131 (242)
T ss_pred ------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCe
Confidence 1238999999999999998765 78889999999999999999999999874444556778888888888 999
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
++|+||||+|......+...+++|+||+++.+
T Consensus 132 liv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------------------ 163 (242)
T cd07498 132 VVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------------------ 163 (242)
T ss_pred EEEEecCCCCCccCCCCcCCCCeEEEEEeCCC------------------------------------------------
Confidence 99999999998877778899999999997644
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
+.++.||++||.. |+.|||.++.......... .+.....|..++|||||||+|||++|
T Consensus 164 ----------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~A 221 (242)
T cd07498 164 ----------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAA 221 (242)
T ss_pred ----------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHH
Confidence 3457899999987 9999999998875442111 11223578999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~T 553 (726)
||+|++|+|++++||++|++|
T Consensus 222 ll~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 222 LILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=359.03 Aligned_cols=263 Identities=28% Similarity=0.315 Sum_probs=187.4
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccc
Q 040462 127 RKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAA 206 (726)
Q Consensus 127 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaa 206 (726)
+.+++|+||+|||||+|||++||+|.+..+ .. +.|.+...+.|..||||||||||+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------~~------------~~~~~~~~~~d~~gHGT~VAgiia 57 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI------------TT------------KSFVGGEDVQDGHGHGTHCAGTIF 57 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc------------cC------------cccCCCCCCCCCCCcHHHHHHHHh
Confidence 357899999999999999999999986521 11 122222345788999999999999
Q ss_pred cCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCC---------CCcc
Q 040462 207 GNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIP---------VDFI 276 (726)
Q Consensus 207 g~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~---------~~~~ 276 (726)
|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||.... ....
T Consensus 58 g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~ 128 (297)
T cd07480 58 GRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAF 128 (297)
T ss_pred cccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchh
Confidence 97532 2337999999999999997655 777789999999999999999999998631 1111
Q ss_pred ccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 277 KDAIAIGAFHA---------------MEKGILTLNSAGNSGSNLGFVY-----SVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 277 ~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
...++.....+ .++|++||+||||++....... ...+++++|++....
T Consensus 129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~------------ 196 (297)
T cd07480 129 SRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL------------ 196 (297)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC------------
Confidence 22333333333 6899999999999986543221 122344455443322
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
.....|+++.+ ....||||+|||++|++++
T Consensus 197 ----------------------------------------------~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~ 226 (297)
T cd07480 197 ----------------------------------------------GRTGNFSAVAN----FSNGEVDIAAPGVDIVSAA 226 (297)
T ss_pred ----------------------------------------------CCCCCccccCC----CCCCceEEEeCCCCeEeec
Confidence 11112222222 1234789999999999987
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC--CCCCCCCcCCCCcc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSS--KVNDAEVAFGSGHV 574 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~--~~~~~~~~~G~G~v 574 (726)
+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+......... .....+..+|+|++
T Consensus 227 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~ 293 (297)
T cd07480 227 PGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLG 293 (297)
T ss_pred CCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCcee
Confidence 654 799999999999999999999999999999999888888443221111 11235678999998
Q ss_pred Ccc
Q 040462 575 NPV 577 (726)
Q Consensus 575 n~~ 577 (726)
++.
T Consensus 294 ~~~ 296 (297)
T cd07480 294 LAP 296 (297)
T ss_pred ecC
Confidence 875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=353.44 Aligned_cols=247 Identities=19% Similarity=0.147 Sum_probs=181.9
Q ss_pred ccchhhccCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 120 GLNQSITRKHS-VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 120 g~~~~~w~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
+++ .+|+... .|+||+|+|||+|||.+||+|.++..... + ...+.|+.+||
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~~------------~---------------~~~~~d~~gHG 54 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITLI------------S---------------GLTDQADSDHG 54 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccccc------------C---------------CCCCCCCCCCc
Confidence 445 7898744 58999999999999999999987521100 0 11256889999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh----CCCeEEEeccCCCCCCC
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA----DGVDIITVSLGGNIPVD 274 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~----~gvdVIn~S~G~~~~~~ 274 (726)
|||||||++.. +- .| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||||||......
T Consensus 55 T~VAGiIaa~~----n~----~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 55 TAVLGIIVAKD----NG----IG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred chhheeeeeec----CC----Cc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 99999999863 11 22 28999999999999985 3456677777776 45778999999862211
Q ss_pred -----ccccHHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-cCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 275 -----FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV------------Y-SVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 275 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
.....+..++.+|.++|+++|+||||++...... + ...|++|+|||++.+.
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~----------- 189 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT----------- 189 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------
Confidence 2234556677788899999999999998753211 1 1235788888875431
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
...++.||++||.. ||.|||++|+++.
T Consensus 190 ---------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~~ 216 (277)
T cd04843 190 ---------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTTG 216 (277)
T ss_pred ---------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEecC
Confidence 01268899999987 9999999999998
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKS----F-HPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~sp~~Ik~~L~~TA~ 555 (726)
...... ..+.....|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 217 ~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 217 YGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 754211 0011112457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=348.89 Aligned_cols=249 Identities=30% Similarity=0.425 Sum_probs=193.8
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCcee---eeeeecCCCCCCCCCCCCcchhhhccccCc
Q 040462 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKL---IGARYYTTDGTARDKDGHGTHTASTAAGNE 209 (726)
Q Consensus 133 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~kl---ig~~~~~~~~~~~D~~gHGThVAgiaag~~ 209 (726)
+||+|||||||||++||+|.++...... ..+..+.+..++..+ .+..+.....++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG----EIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc----cccccCcccCCCCcccCCCcccccCCCCCCCCCCCcHHHHHHHHHCcC
Confidence 6999999999999999999975211000 111122111111111 112222234567889999999999999975
Q ss_pred CCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHH
Q 040462 210 VKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288 (726)
Q Consensus 210 ~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~ 288 (726)
..+. .+.||||+|+|+.+|++...+ ++..+++++++++++.+++|||+|||.... ...+..++.++.
T Consensus 78 ~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~~ 145 (259)
T cd07473 78 NNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARAI 145 (259)
T ss_pred CCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHHH
Confidence 3221 248999999999999998876 889999999999999999999999998722 566777778999
Q ss_pred hCCcEEEEecCCCCCCC---Ccccc--CCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCC
Q 040462 289 EKGILTLNSAGNSGSNL---GFVYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVS 363 (726)
Q Consensus 289 ~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 363 (726)
++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 146 ~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------------------------- 186 (259)
T cd07473 146 DAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------------------------- 186 (259)
T ss_pred hCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------------------------
Confidence 99999999999998762 23343 45889999986543
Q ss_pred CCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhc
Q 040462 364 ESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNS 443 (726)
Q Consensus 364 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 443 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccch
Q 040462 444 TKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMA 523 (726)
Q Consensus 444 ~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 523 (726)
+.++.||++||. +||+.|||.++++..... .|..++|||||
T Consensus 187 -------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~-------------~~~~~~GTS~A 227 (259)
T cd07473 187 -------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPGG-------------GYGYMSGTSMA 227 (259)
T ss_pred -------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCCC-------------cEEEeccHhHH
Confidence 345669999985 469999999999966543 78999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 524 CPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 524 aP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=339.51 Aligned_cols=226 Identities=37% Similarity=0.510 Sum_probs=188.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||+||+++||+|.+. ...+.+|..+. .....|..+|||||||+|++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------~~~~~~~~~~~----------~~~~~~~~~HGT~vA~ii~~~~~~~- 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------IVGGANFTGDD----------NNDYQDGNGHGTHVAGIIAALDNGV- 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------ccCcccccCCC----------CCCCCCCCCCHHHHHHHHhcccCCC-
Confidence 799999999999999999864 11122221110 1355678999999999999975321
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi 292 (726)
.+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||+|||... ....+..++..+.++|+
T Consensus 58 --------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~~gi 125 (229)
T cd07477 58 --------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAAGI 125 (229)
T ss_pred --------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHHCCC
Confidence 238999999999999998876 67789999999999999999999999862 23455666678889999
Q ss_pred EEEEecCCCCCCCCcc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCC
Q 040462 293 LTLNSAGNSGSNLGFV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFS 370 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (726)
++|+||||++...... ++..+++|+||+++.+
T Consensus 126 liv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 159 (229)
T cd07477 126 LVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------------------------------------- 159 (229)
T ss_pred EEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC----------------------------------------------
Confidence 9999999999876664 7889999999997644
Q ss_pred CCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEE
Q 040462 371 SQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 450 (726)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHH
Q 040462 451 ILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAV 530 (726)
Q Consensus 451 i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 530 (726)
+.+..||++|+.. |+.|||++|+++++.. .|..++|||||||+|||+
T Consensus 160 ------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~ 206 (229)
T cd07477 160 ------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGV 206 (229)
T ss_pred ------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHH
Confidence 3456799999876 9999999999987754 688999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 040462 531 AAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 531 aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
+|||+|++|++++.+||++|++|
T Consensus 207 ~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 207 AALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=356.01 Aligned_cols=271 Identities=34% Similarity=0.485 Sum_probs=210.8
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCCccccccCCCcccCCceeeeeeecCC----CCCCCCCCCCcchhhhccccCcC
Q 040462 136 IIGVIDSGIWPESESFS-DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTT----DGTARDKDGHGTHTASTAAGNEV 210 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~----~~~~~D~~gHGThVAgiaag~~~ 210 (726)
+|||||||||++||+|. .+ +. ..++.+.+.|.+ .....|..+|||||||+|+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-FI------------------WSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-EE------------------EEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-cc------------------cccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 33 10 112223333322 3456778999999999999986
Q ss_pred CCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHH-hCCCeEEEeccCCC--CCCCccccHHHHHHHHH
Q 040462 211 KDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAI-ADGVDIITVSLGGN--IPVDFIKDAIAIGAFHA 287 (726)
Q Consensus 211 ~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~-~~gvdVIn~S~G~~--~~~~~~~~~~~~a~~~a 287 (726)
. .+.. ...|+||+|+|+.+|+++..+....+++.++++++ +++++|||+|||.. .......+.+..++..+
T Consensus 61 ~-~~~~-----~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 61 G-NNGP-----GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp S-SSSS-----SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred c-cccc-----ccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 2 2211 23899999999999998877677888999999999 89999999999883 12223445566777788
Q ss_pred HhCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCC
Q 040462 288 MEKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSE 364 (726)
Q Consensus 288 ~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 364 (726)
.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------------- 174 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------------- 174 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------------------------
T ss_pred cccCcceeeccccccccccccccccccccccccccccccc----------------------------------------
Confidence 99999999999999877653 55667899999987643
Q ss_pred CCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 365 SCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 365 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchh
Q 040462 445 KKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524 (726)
Q Consensus 445 ~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 524 (726)
..++.||++|+.. .++++||||+|||.+|+++++... ...|..++||||||
T Consensus 175 ------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aa 225 (282)
T PF00082_consen 175 ------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAA 225 (282)
T ss_dssp ------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHH
T ss_pred ------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchH
Confidence 2457899997543 278999999999999988886541 13588999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 525 P~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
|+|||++|||+|++|+|++++||.+|++||+++........+..||||++|+.+|++
T Consensus 226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999998732223356788999999999974
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=331.93 Aligned_cols=221 Identities=25% Similarity=0.299 Sum_probs=177.4
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
||+|||||||||++||+|.+.-. .+..+.++ ++..+.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~------------~~~~~~~~------~~~~~~~~~~d~~gHGT~vAgiia~~----- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL------------DGEVTIDL------EIIVVSAEGGDKDGHGTACAGIIKKY----- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc------------cccccccc------ccccCCCCCCCCCCcHHHHHHHHHcc-----
Confidence 79999999999999999986511 11111110 11122455678899999999999874
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCc
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGI 292 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi 292 (726)
+|+++|+.+|+++..+ +..+++++||+|++++|++|||||||... ......+..++.++.++|+
T Consensus 58 -------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~~~g~ 122 (222)
T cd07492 58 -------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAYKAGG 122 (222)
T ss_pred -------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHHHCCC
Confidence 5999999999998876 88899999999999999999999999872 2233566777788889999
Q ss_pred EEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 293 LTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 293 ~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
++|+||||++.... .++..+++|+|++...++
T Consensus 123 l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------------------- 154 (222)
T cd07492 123 IIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------------------- 154 (222)
T ss_pred EEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------
Confidence 99999999987543 367888999999865331
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAA 532 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 532 (726)
.. +.+++ ++|+.|||.+|+++++.. .|..++|||||||+|||++|
T Consensus 155 -----------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~A 199 (222)
T cd07492 155 -----------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVA 199 (222)
T ss_pred -----------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHH
Confidence 00 11133 349999999999987653 78999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHhccc
Q 040462 533 YVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 533 Ll~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
||+|++|+|+++|||++|++||+
T Consensus 200 ll~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 200 LLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=338.05 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=169.1
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCC
Q 040462 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVK 211 (726)
Q Consensus 132 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~ 211 (726)
+++|+|||||||||++||+|.++ ...+.+|.+...- + ........|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------i~~~~~~~~~~~~-~---~~~~~~~~d~~gHGT~vAgiI~----- 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------IIGGKSFSPYEGD-G---NKVSPYYVSADGHGTAMARMIC----- 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------cccCCCCCCCCCC-c---ccCCCCCCCCCCcHHHHHHHHH-----
Confidence 78999999999999999999864 2223333221100 0 0001223578999999999996
Q ss_pred CCccccccCcceeecccCceEEEEEeeCCCC-------CCHHHHHHHHHHHHhCCCeEEEeccCCCCCC--CccccHHHH
Q 040462 212 DASFYGVGQGTARGGVPSARIAAYKVCNPSG-------CASTDILAAFDDAIADGVDIITVSLGGNIPV--DFIKDAIAI 282 (726)
Q Consensus 212 ~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~--~~~~~~~~~ 282 (726)
|+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||..... ......+..
T Consensus 61 -------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ 127 (247)
T cd07491 61 -------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELEN 127 (247)
T ss_pred -------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHH
Confidence 369999999999998643 4678899999999999999999999987221 123567888
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC-cc--ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEec
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLG-FV--YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHG 359 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~ 359 (726)
++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 128 ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~----------------------------------- 172 (247)
T cd07491 128 AIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED----------------------------------- 172 (247)
T ss_pred HHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC-----------------------------------
Confidence 888999999999999999998764 33 4577999999998655
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHH
Q 040462 360 KEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 360 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 439 (726)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccc
Q 040462 440 YKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519 (726)
Q Consensus 440 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 519 (726)
+.++.||++|+.. |+.|||++|+++++.. ....|..++|
T Consensus 173 -----------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sG 211 (247)
T cd07491 173 -----------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTG 211 (247)
T ss_pred -----------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeecc
Confidence 3456799999987 9999999999886521 1147999999
Q ss_pred ccchhHHHHHHHHHHHhh
Q 040462 520 TSMACPHAAAVAAYVKSF 537 (726)
Q Consensus 520 TSmAaP~VAG~aALl~~~ 537 (726)
||||||||||++|||++.
T Consensus 212 TS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 212 SSVATALAAGLAALILYC 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=347.50 Aligned_cols=251 Identities=22% Similarity=0.208 Sum_probs=183.6
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCC--CCCC
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR--DKDG 196 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~--D~~g 196 (726)
+++. .+|+.+++|+||+|+|||||||++||+|.++-.. ..+++|..+. ....+. |..|
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------~~~~~~~~~~---------~~~~~~~~~~~g 85 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------EASYDFNDND---------PDPTPRYDDDNS 85 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------cccccccCCC---------CCCCCccccccc
Confidence 3444 8999999999999999999999999999865211 0112221100 012222 7889
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC--
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD-- 274 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-- 274 (726)
|||||||||+|+.... .| ..||||+|+|+.+|+++.. ........++.++.+ .++|||+|||......
T Consensus 86 HGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 86 HGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred cCcceeeEEEeecCCC---cc-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999999984221 11 2899999999999999765 334455566665544 5699999999763221
Q ss_pred -ccccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeee
Q 040462 275 -FIKDAIAIGAFHAME-----KGILTLNSAGNSGSNLGF----VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSI 344 (726)
Q Consensus 275 -~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~ 344 (726)
........++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------------------- 215 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------------------- 215 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------------------
Confidence 122334444445443 699999999999983221 22467899999997654
Q ss_pred ccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeee
Q 040462 345 NSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSL 424 (726)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 424 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCcc-------EEeecC
Q 040462 425 PAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVD-------ILAAVS 497 (726)
Q Consensus 425 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~-------I~sa~~ 497 (726)
+.++.||++|+.. ++.|||.. |+++..
T Consensus 216 --------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~ 249 (297)
T cd04059 216 --------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDL 249 (297)
T ss_pred --------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCC
Confidence 3557899999987 89999987 665544
Q ss_pred CCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 498 PLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 498 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
.. ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 250 ~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 250 GG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 31 0136788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=343.65 Aligned_cols=254 Identities=28% Similarity=0.349 Sum_probs=179.1
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
.|+|||||||||++||+|.+.-.. ....+. .....+.. ......+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~-~~~~~~--~~~~~~~~------~~~~~~~~~~~~d~~gHGT~vAgiia~~~~--- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS-YSKNLV--PKGGYDGK------EAGETGDINDIVDKLGHGTAVAGQIAANGN--- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc-cccccc--cCCCcCCc------cccccCCCCcCCCCCCcHhHHHHHHhcCCC---
Confidence 489999999999999999864110 000000 00000000 000000123456779999999999998631
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC-------ccccHHHHHHH
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVD-------FIKDAIAIGAF 285 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-------~~~~~~~~a~~ 285 (726)
..||||+|+|+.+|+++..+ ....+++++|++|++++++|||+|||...... ...+.+..++.
T Consensus 69 ---------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~ 139 (294)
T cd07482 69 ---------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN 139 (294)
T ss_pred ---------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHH
Confidence 15999999999999998876 48899999999999999999999999753211 12245666777
Q ss_pred HHHhCCcEEEEecCCCCCCC----------------------CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeee
Q 040462 286 HAMEKGILTLNSAGNSGSNL----------------------GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343 (726)
Q Consensus 286 ~a~~~Gi~vV~AAGN~g~~~----------------------~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~ 343 (726)
.+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 140 ~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~------------------- 200 (294)
T cd07482 140 YAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNN------------------- 200 (294)
T ss_pred HHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCC-------------------
Confidence 88899999999999999654 1233455666777665433
Q ss_pred eccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeee
Q 040462 344 INSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVS 423 (726)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 423 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (294)
T cd07482 201 -------------------------------------------------------------------------------- 200 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCC--
Q 040462 424 LPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAP-- 501 (726)
Q Consensus 424 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~-- 501 (726)
+.++.||++|+.. +|++|||+++.........
T Consensus 201 ---------------------------------------~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~ 234 (294)
T cd07482 201 ---------------------------------------GNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKW 234 (294)
T ss_pred ---------------------------------------CCcCccccCCCCc-------ceEECCCCCcccccccCcccc
Confidence 4557799998754 4999999998532211100
Q ss_pred CCCC-------CCCccccceeecccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 040462 502 ISTD-------PEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP-SAIRSAIMTT 553 (726)
Q Consensus 502 ~~~~-------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp-~~Ik~~L~~T 553 (726)
.... ........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 235 VNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 0000 01123457899999999999999999999999999999 9999999987
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=328.75 Aligned_cols=243 Identities=28% Similarity=0.333 Sum_probs=189.0
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcC
Q 040462 131 VESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEV 210 (726)
Q Consensus 131 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~ 210 (726)
+|+||+|+|||+||+++||+|.+......... ..++. ......|..+|||||||+|+|+..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~----------~~~~~---------~~~~~~~~~~HGT~vagiiag~~~ 61 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV----------AVNDA---------GYASNGDGDSHGTHVAGVIAAARD 61 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc----------ccccc---------cCCCCCCCCChHHHHHHHHhcCcC
Confidence 69999999999999999999987622110000 00000 123456789999999999999853
Q ss_pred CCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC-----------ccc
Q 040462 211 KDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVD-----------FIK 277 (726)
Q Consensus 211 ~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~-----------~~~ 277 (726)
. ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+|||...... ...
T Consensus 62 ~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~ 132 (267)
T cd04848 62 G---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQG 132 (267)
T ss_pred C---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccc
Confidence 2 2348999999999999998764 67788999999999999999999999873221 245
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCC
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSNLGFV---------YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFA 348 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~ 348 (726)
..+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 133 ~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----------------------- 189 (267)
T cd04848 133 NTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----------------------- 189 (267)
T ss_pred hHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----------------------
Confidence 6677778889999999999999998654333 23567899999986552
Q ss_pred CCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEE
Q 040462 349 MKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVA 428 (726)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 428 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccc--cCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAP--FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 429 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
.... ||++|+.. -.+++.|||.+|+++.+..
T Consensus 190 -----------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~------- 222 (267)
T cd04848 190 -----------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG------- 222 (267)
T ss_pred -----------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC-------
Confidence 1222 47887643 2347999999999987631
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~ 555 (726)
...|..++|||||||+|||++||++|++|+|++++||++|++||+
T Consensus 223 ----~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 ----GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ----CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 137889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=319.40 Aligned_cols=351 Identities=22% Similarity=0.337 Sum_probs=261.9
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCC------CCCcEEEeecceeeEEEEEeC-----HHHHHHHHcCCCeE
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSS------VGDVLVRSYRRSFNGFAAKLT-----DLERQKLASMEEVV 100 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~y~~~~~g~s~~l~-----~~~~~~L~~~p~V~ 100 (726)
+..|||+|+.... ...+..-+.+.+.+..- .+...--.|-.-|.-+-++-. .-+++.|..+|+|+
T Consensus 49 e~EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred cceeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 5679999987544 22333444444442111 111222344445554444432 23478899999999
Q ss_pred EEEeCceecccc---------------------------------CCCc--c----------ccccchhhccCCCCCCCc
Q 040462 101 SVFPSRTLQFHT---------------------------------TRSW--D----------FMGLNQSITRKHSVESNI 135 (726)
Q Consensus 101 ~v~~~~~~~~~~---------------------------------~~s~--~----------~~g~~~~~w~~~~~G~gV 135 (726)
.|.|.+.+..-. +..| . .++.+ -+|+.|++|++|
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~V 203 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKV 203 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCce
Confidence 999876653200 0011 1 12333 699999999999
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCcc
Q 040462 136 IIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASF 215 (726)
Q Consensus 136 ~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~ 215 (726)
+|||.|||+.-+||.|+.-. -...|. ....-.|.-||||.|||+|||..
T Consensus 204 kvAiFDTGl~~~HPHFrnvK---ERTNWT----------------------NE~tLdD~lgHGTFVAGvia~~~------ 252 (1033)
T KOG4266|consen 204 KVAIFDTGLRADHPHFRNVK---ERTNWT----------------------NEDTLDDNLGHGTFVAGVIAGRN------ 252 (1033)
T ss_pred EEEEeecccccCCccccchh---hhcCCc----------------------CccccccCcccceeEeeeeccch------
Confidence 99999999999999997420 011221 13456678999999999999973
Q ss_pred ccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEE
Q 040462 216 YGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILT 294 (726)
Q Consensus 216 ~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~v 294 (726)
...|.||+++|+++||+-+.. .+.+.+++|+.||+....||+|+|+|++ ++.+.++-.-+.+....+|++
T Consensus 253 ------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 253 ------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred ------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEE
Confidence 237889999999999998866 8899999999999999999999999986 567778777777888999999
Q ss_pred EEecCCCCCCCCccccCCC--ceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCC
Q 040462 295 LNSAGNSGSNLGFVYSVAP--WLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQ 372 (726)
Q Consensus 295 V~AAGN~g~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (726)
|.|+||+||-.++..+.+. .+|.||..+.|
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGIdfd------------------------------------------------ 355 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGIDFD------------------------------------------------ 355 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeecccccc------------------------------------------------
Confidence 9999999998777665443 45555543222
Q ss_pred CCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEe
Q 040462 373 ACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEIL 452 (726)
Q Consensus 373 ~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~ 452 (726)
T Consensus 356 -------------------------------------------------------------------------------- 355 (1033)
T KOG4266|consen 356 -------------------------------------------------------------------------------- 355 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCCcccccCCCCCCCC----CCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHH
Q 040462 453 KTEAIKDFDAPVVAPFSSRGPNAI----LPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAA 528 (726)
Q Consensus 453 ~~~~~~~~~~~~~a~fSs~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 528 (726)
+.++.|||||-+.. ..+++||||++-|.+|....... +-..+||||.|+|.||
T Consensus 356 ----------D~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------------GCr~LSGTSVaSPVVA 412 (1033)
T KOG4266|consen 356 ----------DHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-------------GCRSLSGTSVASPVVA 412 (1033)
T ss_pred ----------chhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------------cchhccCCcccchhhh
Confidence 67899999997652 57899999999999987664433 6778999999999999
Q ss_pred HHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 529 AVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 529 G~aALl~~----~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
|+++||.+ +.--+.|+-+|++|+..|..+... .-+.||+|++|+.++.+-
T Consensus 413 Gav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~----NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 413 GAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP----NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----chhhccCcchhHHHHHHH
Confidence 99999976 334579999999999999988764 468999999999998763
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=285.56 Aligned_cols=196 Identities=20% Similarity=0.190 Sum_probs=144.5
Q ss_pred CCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHH--HhCCCeEEEecc
Q 040462 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDA--IADGVDIITVSL 267 (726)
Q Consensus 190 ~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A--~~~gvdVIn~S~ 267 (726)
...|..+|||||||||||. .|++|+++|+..++... ....+..+++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 4568999999999999997 56679999987655322 233466777888 667999999999
Q ss_pred CCCCCCC-----ccccHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEEeeeccCcceeeEEEeCCC
Q 040462 268 GGNIPVD-----FIKDAIAIGAFHAMEK-GILTLNSAGNSGSNL-----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNG 336 (726)
Q Consensus 268 G~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g 336 (726)
|...... ...+.+..+++.+.++ |+++|+||||+|.+. ...+..++++|+|||++.....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~--------- 164 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR--------- 164 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc---------
Confidence 9873332 1234566777777766 999999999999853 2335578899999998654210
Q ss_pred ceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCC
Q 040462 337 ATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeec
Q 040462 417 KVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV 496 (726)
Q Consensus 417 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~ 496 (726)
...+.||++|-....++..||||+|||++|++
T Consensus 165 ----------------------------------------------~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s-- 196 (247)
T cd07488 165 ----------------------------------------------FFASDVSNAGSEINSYGRRKVLIVAPGSNYNL-- 196 (247)
T ss_pred ----------------------------------------------ceecccccccCCCCCCCCceeEEEEeeeeEEC--
Confidence 11244565432222377889999999999998
Q ss_pred CCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhc
Q 040462 497 SPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWS------PSAIRSAIMTT 553 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------p~~Ik~~L~~T 553 (726)
+. +.|..++|||||||||||++|||++++|++. --++|.+|+.|
T Consensus 197 ~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 22 2688999999999999999999999987665 45567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=273.52 Aligned_cols=234 Identities=35% Similarity=0.500 Sum_probs=178.6
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCc
Q 040462 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDAS 214 (726)
Q Consensus 135 V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~ 214 (726)
|+|+|||+|++++||+|... ......+.++..+.. ......|..+||||||++|++.....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~~~~~~~~--------~~~~~~~~~~HGt~va~~i~~~~~~~-- 61 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGNDDDDNEN--------GPTDPDDGNGHGTHVAGIIAASANNG-- 61 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCcccccccccCcC--------CCCCCCCCCCcHHHHHHHHhcCCCCC--
Confidence 68999999999999987211 000111111111100 01245678999999999999985321
Q ss_pred cccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHH-hCCCeEEEeccCCCCCCCccccHHHHHHHHHHhC-C
Q 040462 215 FYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAI-ADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEK-G 291 (726)
Q Consensus 215 ~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~-~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~-G 291 (726)
...|+||+++|+.+|+....+ .....+++++++++ +.+++|||+|||..... ....+...+..+.++ |
T Consensus 62 -------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~ 132 (241)
T cd00306 62 -------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYALAKLG 132 (241)
T ss_pred -------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcC
Confidence 117999999999999998766 67889999999999 89999999999987321 345566677788877 9
Q ss_pred cEEEEecCCCCCCCC---ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCc
Q 040462 292 ILTLNSAGNSGSNLG---FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPE 368 (726)
Q Consensus 292 i~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (726)
+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 133 ~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------------------- 169 (241)
T cd00306 133 VLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------------------- 169 (241)
T ss_pred eEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------------------------------
Confidence 999999999998876 4778899999999986552
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCe
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPE 448 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 448 (726)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCccc-ccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHH
Q 040462 449 AEILKTEAIKDFDAPVVA-PFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHA 527 (726)
Q Consensus 449 ~~i~~~~~~~~~~~~~~a-~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 527 (726)
... .++++|+ |||+.|||.++...... ....+..++|||||||+|
T Consensus 170 ---------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~v 215 (241)
T cd00306 170 ---------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIV 215 (241)
T ss_pred ---------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHH
Confidence 111 3444554 56999999999875111 124799999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhc
Q 040462 528 AAVAAYVKSFHPDWSPSAIRSAIMTT 553 (726)
Q Consensus 528 AG~aALl~~~~P~~sp~~Ik~~L~~T 553 (726)
||++||++|++|++++.++|++|++|
T Consensus 216 aG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 216 AGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=297.27 Aligned_cols=239 Identities=27% Similarity=0.342 Sum_probs=185.6
Q ss_pred CCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C--CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 194 KDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G--CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 194 ~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
...|||||||||+|+....-. ..||||+|+|+..++.+.. | .+...+.+|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999755322 3789999999999998753 3 5667899999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS---VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSF 347 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~ 347 (726)
...+.....++..-..+-++|+++|+||||+||...+++. ....+|.|||.-......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 5555555566655555568999999999999999877764 3447888888532211000
Q ss_pred CCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEE
Q 040462 348 AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAV 427 (726)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~ 427 (726)
.|.+.
T Consensus 443 -----~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 443 -----EYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhhh----------------------------------------------------------------------
Confidence 00000
Q ss_pred EeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCC
Q 040462 428 AVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPE 507 (726)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 507 (726)
.+-...+..+|||||+. ||-+--.|.|||+.|-+- +...
T Consensus 448 -------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t------- 486 (1304)
T KOG1114|consen 448 -------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT------- 486 (1304)
T ss_pred -------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-------
Confidence 01124577899999998 898988999999998543 2110
Q ss_pred CccccceeecccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 508 DKRRVKYSIESGTSMACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 508 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
-..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++.+. .+|.+|.|++++.+|.+
T Consensus 487 ---lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 ---LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ---hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 12456899999999999999999865 568899999999999999999886 68999999999999976
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=243.56 Aligned_cols=269 Identities=30% Similarity=0.437 Sum_probs=199.5
Q ss_pred hhccC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCC--CCCCCCCcc
Q 040462 124 SITRK--HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGT--ARDKDGHGT 199 (726)
Q Consensus 124 ~~w~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~--~~D~~gHGT 199 (726)
..|.. +.+|+||+|+|||+||+..||+|.+.... +.+|. ..... ..|..+|||
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~d~~~hGt 187 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------GGDFV-----------DGDPEPPFLDDNGHGT 187 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------ccccc-----------cCCCCCCCCCCCCCcc
Confidence 67887 89999999999999999999999876211 11221 11122 578999999
Q ss_pred hhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-C-CCHHHHHHHHHHHHhCC--CeEEEeccCCCCCCCc
Q 040462 200 HTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-G-CASTDILAAFDDAIADG--VDIITVSLGGNIPVDF 275 (726)
Q Consensus 200 hVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~A~~~g--vdVIn~S~G~~~~~~~ 275 (726)
||++++++....+ .....|+||+++++.+|++... | ....+++.+|+++++.+ +++||||+|.. ....
T Consensus 188 ~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~~ 259 (508)
T COG1404 188 HVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-LSDS 259 (508)
T ss_pred eeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-cccc
Confidence 9999999842110 1113899999999999999876 5 77788899999999999 99999999985 3333
Q ss_pred cccHHHHHHHHHHhCC-cEEEEecCCCCCCCCc----cccCC--CceEEEeeeccCcceeeEEEeCCCceEeeeeeccCC
Q 040462 276 IKDAIAIGAFHAMEKG-ILTLNSAGNSGSNLGF----VYSVA--PWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFA 348 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~ 348 (726)
....+..++..++..| +++|+++||.+.+... .+... +.+++|++.+.
T Consensus 260 ~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------- 314 (508)
T COG1404 260 ASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------- 314 (508)
T ss_pred ccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-------------------------
Confidence 4456666677887777 9999999999977521 22222 35666666432
Q ss_pred CCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEE
Q 040462 349 MKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVA 428 (726)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 428 (726)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEe-----ecCCCCCCC
Q 040462 429 VSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILA-----AVSPLAPIS 503 (726)
Q Consensus 429 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~ 503 (726)
.+.++.||++|+.. ..|++|||.+|.+ .+++..
T Consensus 315 ---------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~--- 352 (508)
T COG1404 315 ---------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG--- 352 (508)
T ss_pred ---------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCCc---
Confidence 14668899999751 2299999999987 333320
Q ss_pred CCCCCccccceeecccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 504 TDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHP-DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 504 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|..+...+..
T Consensus 353 --------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 353 --------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP--LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred --------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc--CCccccccccCccccccccc
Confidence 2499999999999999999999999999 89999999999988874 11 11144567777666655544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-24 Score=216.38 Aligned_cols=407 Identities=16% Similarity=0.192 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHhhhhcccccCCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhc---CCCCCCcEEEeecceeeEEE---E
Q 040462 10 FQCLSFIIFFNMTSLWAATYDDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVE---GSSVGDVLVRSYRRSFNGFA---A 83 (726)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~y~~~~~g~s---~ 83 (726)
+++.++++|+...-+..+-..-.+.|+|+|++.... +. ...+.+.-.- ..-....-+|.| .-+++. -
T Consensus 9 l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~----~~-ah~va~~hgf~nrg~~~a~d~eyhf--~h~~l~har~ 81 (629)
T KOG3526|consen 9 LIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGL----ED-AHRVAKRHGFINRGQVAASDNEYHF--VHPALVHART 81 (629)
T ss_pred HHHHHHHHHHHHhccccCcceeeeeEEEEEeccCCh----HH-HHHHHHHhCccccccccccCceeee--eccccchhhh
Confidence 344444455444444444444577899999987542 11 1122222110 001111223333 223332 1
Q ss_pred EeCHHHHHHHHcCCCeEEEEeCceec------------------cccCCCccccccch------------hhccCCCCCC
Q 040462 84 KLTDLERQKLASMEEVVSVFPSRTLQ------------------FHTTRSWDFMGLNQ------------SITRKHSVES 133 (726)
Q Consensus 84 ~l~~~~~~~L~~~p~V~~v~~~~~~~------------------~~~~~s~~~~g~~~------------~~w~~~~~G~ 133 (726)
+-+...-++|.++|.|+.+....-+. +..+.+|-+....+ .+|..+++|+
T Consensus 82 rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgk 161 (629)
T KOG3526|consen 82 RRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGK 161 (629)
T ss_pred hcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccCC
Confidence 12223345677777777654322211 12334565544332 7999999999
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCC
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDA 213 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~ 213 (726)
+|+++|+|.||||-||++..+ | ..+..++|..|+-++..||.++ -.+.|||.|||-+++...+
T Consensus 162 nvttaimddgvdymhpdlk~n--------y--naeasydfssndpfpyprytdd-----wfnshgtrcagev~aardn-- 224 (629)
T KOG3526|consen 162 NVTTAIMDDGVDYMHPDLKSN--------Y--NAEASYDFSSNDPFPYPRYTDD-----WFNSHGTRCAGEVVAARDN-- 224 (629)
T ss_pred CceEEeecCCchhcCcchhcc--------c--CceeecccccCCCCCCCcccch-----hhhccCccccceeeeeccC--
Confidence 999999999999999999753 1 2566778887775544333211 1478999999988876543
Q ss_pred ccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCCCCccccHH---HHHHHHHH-
Q 040462 214 SFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIPVDFIKDAI---AIGAFHAM- 288 (726)
Q Consensus 214 ~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~~~~~---~~a~~~a~- 288 (726)
+..| .|||.+.++..+|+++. .+..|+++|-..--+ ..++|.+-|||........+.|- -+++-.-+
T Consensus 225 gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvn 296 (629)
T KOG3526|consen 225 GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVN 296 (629)
T ss_pred Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhh
Confidence 3334 79999999999999975 456666655322211 25789999999873332222222 11222222
Q ss_pred ----hCCcEEEEecCCCCCCCCc---cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCC
Q 040462 289 ----EKGILTLNSAGNSGSNLGF---VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKE 361 (726)
Q Consensus 289 ----~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~ 361 (726)
..|-++|.|.|..|.+... -.+.+-|.|++-+.-.+.+
T Consensus 297 egrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~----------------------------------- 341 (629)
T KOG3526|consen 297 EGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE----------------------------------- 341 (629)
T ss_pred cccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc-----------------------------------
Confidence 2467999999988865322 2235667777754322210
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHH
Q 040462 362 VSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYK 441 (726)
Q Consensus 362 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~ 441 (726)
...+.+.|..
T Consensus 342 -----nahydescss----------------------------------------------------------------- 351 (629)
T KOG3526|consen 342 -----NAHYDESCSS----------------------------------------------------------------- 351 (629)
T ss_pred -----cccccchhhH-----------------------------------------------------------------
Confidence 0112233321
Q ss_pred hcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccccc
Q 040462 442 NSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTS 521 (726)
Q Consensus 442 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 521 (726)
...+.||+-|.++ +- |+. .+ +..+.....-||||
T Consensus 352 ---------------------tlastfsng~rnp--------et---gva--tt------------dlyg~ct~~hsgts 385 (629)
T KOG3526|consen 352 ---------------------TLASTFSNGGRNP--------ET---GVA--TT------------DLYGRCTRSHSGTS 385 (629)
T ss_pred ---------------------HHHHHhhcCCcCC--------Cc---cee--ee------------ccccceecccCCcc
Confidence 2335677766554 11 111 11 11123556789999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc--CCCC--------C--CCCCCCcCCCCccCccccCCCcccccCC
Q 040462 522 MACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP--MNSS--------K--VNDAEVAFGSGHVNPVKAVNPGLIYETS 589 (726)
Q Consensus 522 mAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~--i~~~--------~--~~~~~~~~G~G~vn~~~A~~~glv~d~~ 589 (726)
.|+|-.||+.||-++++|.++..+++.+-.-|.+. +-+. . +-..+..||+|.+|+.+-+.-..-+...
T Consensus 386 aaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktv 465 (629)
T KOG3526|consen 386 AAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTV 465 (629)
T ss_pred ccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccC
Confidence 99999999999999999999999999887777753 2221 1 1225668999999998777654444444
Q ss_pred hhhHHHhhhcCCC
Q 040462 590 KQDYIKILCSIGY 602 (726)
Q Consensus 590 ~~dy~~~lc~~~~ 602 (726)
+.. |-|..|.
T Consensus 466 ppr---yhc~ag~ 475 (629)
T KOG3526|consen 466 PPR---YHCTAGL 475 (629)
T ss_pred CCc---eeecccc
Confidence 443 5677664
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=179.49 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=82.2
Q ss_pred ceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhC---CCeEEEeccCCCCCC--CccccHHHHHHHHHHhCCcEEEE
Q 040462 222 TARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIAD---GVDIITVSLGGNIPV--DFIKDAIAIGAFHAMEKGILTLN 296 (726)
Q Consensus 222 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~---gvdVIn~S~G~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~ 296 (726)
.+.||||+|+|+.|++++.. ...++.++.+++++ +++|||+|||..... ..+.+.++.++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999998642 45678889999887 999999999987321 12346778888899999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEEeeeccCc
Q 040462 297 SAGNSGSNLG-----------FVYSVAPWLMSVAASTTDR 325 (726)
Q Consensus 297 AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~ 325 (726)
|+||+|.... .+++..||+++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999997653 3467899999999997764
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=103.92 Aligned_cols=116 Identities=40% Similarity=0.605 Sum_probs=92.8
Q ss_pred EEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe------cchhHHHHhcC
Q 040462 331 VLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK------FDGYTEVHKVG 404 (726)
Q Consensus 331 ~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~------~~~~~~~~~~G 404 (726)
++||||+.+.|+++++..+ ..+++++..+.. .......|.+..++..+++||||+|++ .++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~---~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS---GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC---CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6799999999999997655 467777743321 234457899988888999999999987 25678899999
Q ss_pred ceEEEEEecCCCCcee---eeeeeEEEeehhhHHHHHHHHhcCCCCeEEE
Q 040462 405 AAGSILFNDQYEKVSF---VVSLPAVAVSMENFNSLISYKNSTKKPEAEI 451 (726)
Q Consensus 405 a~g~i~~~~~~~~~~~---~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 451 (726)
|.|+|++++....... .+.+|++.|+.++++.|++|++++.++++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTATI 126 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCcceeC
Confidence 9999999887654322 2689999999999999999999988877653
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=100.07 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=82.8
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee----e
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF----V 421 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~ 421 (726)
....+++|.+. |....+...+++||||||+| .+|..+++++||.|+|++++....... .
T Consensus 25 ~~~~~lv~~g~------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 92 (143)
T cd02133 25 GKTYELVDAGL------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEA 92 (143)
T ss_pred CcEEEEEEccC------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCC
Confidence 45678888643 33344455689999999987 578899999999999999887643222 1
Q ss_pred eeeeEEEeehhhHHHHHHHHhcCCCCeEEE-eeeeeecCCCCCcccccCCCCCCC
Q 040462 422 VSLPAVAVSMENFNSLISYKNSTKKPEAEI-LKTEAIKDFDAPVVAPFSSRGPNA 475 (726)
Q Consensus 422 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~~ 475 (726)
..+|++.|+.+++..|++|+++ ++++ +..+.. ..+++.++.||||||..
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 93 VFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 4789999999999999999988 5555 444444 56778899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-09 Score=88.48 Aligned_cols=78 Identities=32% Similarity=0.390 Sum_probs=56.0
Q ss_pred EEEEEeCCCCCCCCcchhHHHHHHHHhhc----CCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceec
Q 040462 34 VYIVYIGSLPKGEYVTSSHHQSILQEVVE----GSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQ 109 (726)
Q Consensus 34 ~yiV~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 109 (726)
+|||.|++..........+.+++.+.+.+ ......++.+.|+..||||+++++++++++|+++|+|++|+||..++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999866333344555555432211 13456799999999999999999999999999999999999999887
Q ss_pred cc
Q 040462 110 FH 111 (726)
Q Consensus 110 ~~ 111 (726)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=104.76 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=89.1
Q ss_pred hhccCCCCCCCcEEEEEc-ccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhh
Q 040462 124 SITRKHSVESNIIIGVID-SGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTA 202 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVID-tGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVA 202 (726)
.+++.+.+|+|++||||| -|-.+...++.- -|+. .|-.-..+.++. + ..-..+|+||=+
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~---~Gip~~~~~~V~----~-----ig~g~~~~~~g~ 278 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQ---YGIPNPILSRVT----Y-----IGPGIGSGTGGA 278 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHh---hCCCCCCceEEE----E-----eCCCCCCCCCcc
Confidence 466667899999999999 555443333220 0110 010000111111 0 003467777755
Q ss_pred hccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCC-eEEEeccCCCC--CCCc--cc
Q 040462 203 STAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGV-DIITVSLGGNI--PVDF--IK 277 (726)
Q Consensus 203 giaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gv-dVIn~S~G~~~--~~~~--~~ 277 (726)
.=+ -++..-+.-+||+|+|..|-+-. + ....+..|+.+-...-+ -+|-+||+... ...+ .-
T Consensus 279 ~E~-----------sLDVE~s~A~AP~A~I~lvvap~--~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~ 344 (1174)
T COG4934 279 EET-----------SLDVEWSHAMAPKANIDLVVAPN--P-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYA 344 (1174)
T ss_pred ccc-----------eeehhhhhccCccCceEEEEcCC--C-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHH
Confidence 311 11111224589999999987622 1 22222223333222211 33335665431 2222 34
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------cccCCCceEEEee
Q 040462 278 DAIAIGAFHAMEKGILTLNSAGNSGSNLGF--------VYSVAPWLMSVAA 320 (726)
Q Consensus 278 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgA 320 (726)
+.++.-...|..+||.+++|+|.+|....+ .++.+|++++||.
T Consensus 345 ~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 345 DLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 556666678889999999999999866542 4568999999998
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=75.95 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc------e--eeeeeeEEEeehhhHHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV------S--FVVSLPAVAVSMENFNSL 437 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~------~--~~~~~p~~~i~~~~~~~l 437 (726)
...|.+..+...+++|||+||+| .+|..+++++||.++|++|+..... . ....+|.++|+.++++.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47899888877899999999998 5688999999999999998776311 1 224699999999999999
Q ss_pred HHHHhcCCCCeEE
Q 040462 438 ISYKNSTKKPEAE 450 (726)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (726)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887765543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-06 Score=74.04 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee-------eeeeeEEEeehhhHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF-------VVSLPAVAVSMENFNS 436 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~-------~~~~p~~~i~~~~~~~ 436 (726)
.....|.+..++ .+++|||+||+| .+|..+++++||.|+|++++......+ ...+|++.|+.+++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345679887774 459999999987 468889999999999999887642222 2479999999999999
Q ss_pred HHHHHhcCCCCeEE
Q 040462 437 LISYKNSTKKPEAE 450 (726)
Q Consensus 437 l~~~~~~~~~~~~~ 450 (726)
|++|++.+.+.+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987655543
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=87.67 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
..|..+++|+++.+++.|.|+...||+..+. +.+. .. +++..++.- ...-.+......|||-|++
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~-~s--------~d~~~~~~~-----p~~~~~~~~~~~~g~~Ca~ 88 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPL-GS--------YDVNRHDND-----PEPRCDGTNENKHGTRCAG 88 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-cCcc-ee--------EeeecCCCC-----cccccCCCCccccCCCCCc
Confidence 7899999999999999999999999999754 1111 11 111101000 0001122235889999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCCCCcc---ccH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIPVDFI---KDA 279 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~~~---~~~ 279 (726)
-.+.......- ..|+++++++..++++.. ...+...+...... .-+++-+.|||........ ...
T Consensus 89 ~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l 157 (431)
T KOG3525|consen 89 CVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTL 157 (431)
T ss_pred ccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcch
Confidence 99987522111 278999999999998753 11122223222222 2478999999976322111 122
Q ss_pred HHHHHHHH-----HhCCcEEEEecCCCCCCCC
Q 040462 280 IAIGAFHA-----MEKGILTLNSAGNSGSNLG 306 (726)
Q Consensus 280 ~~~a~~~a-----~~~Gi~vV~AAGN~g~~~~ 306 (726)
...+...+ ..+|-+.|++-||.|....
T Consensus 158 ~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 158 AREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred hhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 23233332 2578899999999886543
|
|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-06 Score=74.98 Aligned_cols=71 Identities=32% Similarity=0.487 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC-------CceeeeeeeEEEeehhhHHHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE-------KVSFVVSLPAVAVSMENFNSLI 438 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~~~~l~ 438 (726)
...|.+......+++||||||+| .+|..+++++||.|+|+++.... .......||+++|+.++++.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677778888999999999988 68899999999999999992211 1122388999999999999999
Q ss_pred HHH
Q 040462 439 SYK 441 (726)
Q Consensus 439 ~~~ 441 (726)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=71.99 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=64.0
Q ss_pred CCCCCCCCC--CCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc----e-----eeeeeeEEEeehhh
Q 040462 370 SSQACNPGC--INSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV----S-----FVVSLPAVAVSMEN 433 (726)
Q Consensus 370 ~~~~c~~~~--~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~~ 433 (726)
....|.++. +...+++||||||++ .+|..+++++||.|+|++++..... . ....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687776 677889999999987 4788999999999999998875321 1 22579999999999
Q ss_pred HHHHHHHHhcCCCCeE
Q 040462 434 FNSLISYKNSTKKPEA 449 (726)
Q Consensus 434 ~~~l~~~~~~~~~~~~ 449 (726)
+..|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.4e-05 Score=67.89 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCC-CCce------eeeeeeEEEeehhhHHHHHH
Q 040462 372 QACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQY-EKVS------FVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 372 ~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~------~~~~~p~~~i~~~~~~~l~~ 439 (726)
..|.+..+ +.+++|||+|++| .+|..+++++||.++|++|+.. .... ....+|.+.|+.++++.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46776444 3579999999998 6789999999999999998873 2111 12569999999999999999
Q ss_pred HHhcCCCCeEE
Q 040462 440 YKNSTKKPEAE 450 (726)
Q Consensus 440 ~~~~~~~~~~~ 450 (726)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.5e-05 Score=70.28 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=66.9
Q ss_pred CCCCCCCCCC--CCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCC-CCcee------eeeeeEEEeehhhHH
Q 040462 370 SSQACNPGCI--NSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQY-EKVSF------VVSLPAVAVSMENFN 435 (726)
Q Consensus 370 ~~~~c~~~~~--~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~-~~~~~------~~~~p~~~i~~~~~~ 435 (726)
....|.+... ++.++.|+|+|++| .+|..+++++||.++|++|+.. ..... ...+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4568998776 66789999999998 6889999999999999999886 21111 146899999999999
Q ss_pred HHHHHHhcCCCCeEEE
Q 040462 436 SLISYKNSTKKPEAEI 451 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i 451 (726)
.|++++..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999887766543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=66.57 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC-c----------eeeeeeeEEEeehhhH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK-V----------SFVVSLPAVAVSMENF 434 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~----------~~~~~~p~~~i~~~~~ 434 (726)
...|.+.. ...+++|||+|++| .+|..+++++||.++|++|+.... . .....||.++|+..++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 35679999999998 788999999999999999976531 1 1125799999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 040462 435 NSLISYKNSTKKPEAEI 451 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i 451 (726)
+.|.+.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988877655
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=67.52 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC------------ce---eeeeeeEEEee
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK------------VS---FVVSLPAVAVS 430 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~------------~~---~~~~~p~~~i~ 430 (726)
...|.+... +.+++|||+|++| .+|..+++++||.++|++|+.... .. ....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467876543 5579999999998 688999999999999999866531 01 13578999999
Q ss_pred hhhHHHHHHHHhcCCCCeE
Q 040462 431 MENFNSLISYKNSTKKPEA 449 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~ 449 (726)
..+|+.|+++++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=66.37 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC----c-e--eeeeeeEEEeehhhHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK----V-S--FVVSLPAVAVSMENFNS 436 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~----~-~--~~~~~p~~~i~~~~~~~ 436 (726)
+....|.+..+.+.+++|||+|++| .+|..+++++||.++|++|+.... . . ....||+++|+.++++.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 3446799888888889999999998 788999999999999999987631 1 1 23678999999999999
Q ss_pred HHHHHhcC
Q 040462 437 LISYKNST 444 (726)
Q Consensus 437 l~~~~~~~ 444 (726)
|.+.+...
T Consensus 108 i~~~l~~~ 115 (120)
T cd02129 108 IQQTFGDS 115 (120)
T ss_pred HHHHhccC
Confidence 99888743
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00036 Score=64.56 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc----eeeeeeeEEEeehhhHHHHHH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV----SFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~~~~l~~ 439 (726)
.....|.+...+..+++|||+|++| .+|..+++++||.++|++|+..... .....+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 3457899876666689999999998 6889999999999999998775322 11234566666 999999999
Q ss_pred HHhcCCCCeEE
Q 040462 440 YKNSTKKPEAE 450 (726)
Q Consensus 440 ~~~~~~~~~~~ 450 (726)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99877655543
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00038 Score=65.36 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCcee---------eeeeeEEEeehhhHHH
Q 040462 371 SQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVSF---------VVSLPAVAVSMENFNS 436 (726)
Q Consensus 371 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~~---------~~~~p~~~i~~~~~~~ 436 (726)
.+.|.+.. .+++|||+|++| .+|..+++++||.++|++|+....... ...||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788654 378999999999 688999999999999999876532111 2579999999999999
Q ss_pred HHHHHhcCCCCeE
Q 040462 437 LISYKNSTKKPEA 449 (726)
Q Consensus 437 l~~~~~~~~~~~~ 449 (726)
|++++..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00042 Score=62.91 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC-c--------eeeeeeeEEEeehhhH
Q 040462 369 FSSQACNPGCINSSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK-V--------SFVVSLPAVAVSMENF 434 (726)
Q Consensus 369 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~~ 434 (726)
.....|.+. +..+++|||+|++| .+|..+++++||.++|++|+.... . .....+|+++|+.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789765 56889999999988 688999999999999999876532 1 1125799999999999
Q ss_pred HHHHHHHhcC
Q 040462 435 NSLISYKNST 444 (726)
Q Consensus 435 ~~l~~~~~~~ 444 (726)
++|..++..+
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998887643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00063 Score=62.73 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCCCCCCCC--CC----CccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCc--------------eeeeeee
Q 040462 371 SQACNPGCIN--SS----LVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKV--------------SFVVSLP 425 (726)
Q Consensus 371 ~~~c~~~~~~--~~----~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~~p 425 (726)
.+.|.+.... +. ...++|+|++| .+|..+++++||.++|++|+..... .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578765442 22 37889999999 6899999999999999999865421 1124699
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEE
Q 040462 426 AVAVSMENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 426 ~~~i~~~~~~~l~~~~~~~~~~~~~ 450 (726)
+++|+..+++.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999987765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00064 Score=63.40 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=52.2
Q ss_pred CCCCccceEEEEEe----------cchhHHHHhcCceEEEEEecC--CCCc-ee------eeeeeEEEeehhhHHHHHHH
Q 040462 380 NSSLVKGKIVMCSK----------FDGYTEVHKVGAAGSILFNDQ--YEKV-SF------VVSLPAVAVSMENFNSLISY 440 (726)
Q Consensus 380 ~~~~~~gkiv~~~~----------~~~~~~~~~~Ga~g~i~~~~~--~~~~-~~------~~~~p~~~i~~~~~~~l~~~ 440 (726)
.+.+++|||+|++| .+|.++++++||.++|++|+. .... .. ...||++.|+.++++.|...
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 34578999999888 256889999999999999997 3211 11 25899999999999999998
Q ss_pred HhcC
Q 040462 441 KNST 444 (726)
Q Consensus 441 ~~~~ 444 (726)
+..+
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8644
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=63.11 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=62.0
Q ss_pred CCCCCCCCCCC---CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce---------eeeeeeEEEeehhh
Q 040462 371 SQACNPGCINS---SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS---------FVVSLPAVAVSMEN 433 (726)
Q Consensus 371 ~~~c~~~~~~~---~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~ 433 (726)
...|.+....+ ..+.|+|+|++| .+|..+++++||.++|++|+...... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45788765533 789999999998 78999999999999999998653211 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 040462 434 FNSLISYKNSTKK 446 (726)
Q Consensus 434 ~~~l~~~~~~~~~ 446 (726)
++.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=58.45 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=61.6
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-------cchhHHHHhcCceEEEEEecCCCCce----
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-------FDGYTEVHKVGAAGSILFNDQYEKVS---- 419 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-------~~~~~~~~~~Ga~g~i~~~~~~~~~~---- 419 (726)
....++++.+... +..+...+++||||++++ .+|..++.++||.|+|++|+......
T Consensus 22 ~~~~~lV~~g~G~------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 22 EAKGEPVDAGYGL------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CeeEEEEEeCCCC------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 3467788765331 112234579999999988 24688999999999999987654321
Q ss_pred ------eeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 420 ------FVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 420 ------~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
....+|++.|+.++++.|.+.++.+..
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 124699999999999999999987543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0049 Score=55.56 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=51.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEE-ee---c---ce------------------eEEEEec-ceeeEEEEEEecc-C-CCC
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFF-QK---F---TI------------------ISVKVVP-EKKPFVVTVTGKG-L-PES 696 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~-~~---p---~g------------------~~v~v~p-~~~~~~vt~~~~~-~-~~~ 696 (726)
..+++.|++|.|+.+.+|+++.. .. . .| -+|+|.| ++++++|+++... . ...
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~ 88 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASN 88 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCccc
Confidence 58899999999999999999987 21 0 11 1566666 9999999998843 1 033
Q ss_pred CCeEEEEEEEEc-CCe-EEEeeEE
Q 040462 697 GTVVPATLVWSD-GIH-SVRSPIV 718 (726)
Q Consensus 697 ~~~~~G~~~~~~-~~~-~vr~p~~ 718 (726)
..+++|+|.+++ ..+ .+++|++
T Consensus 89 ~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 89 GPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -EEEEEEEEEESSTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEeeeC
Confidence 679999999995 344 8999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.023 Score=53.00 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=53.5
Q ss_pred CCCCccceEEEEEecch------------------hHHHHhcCceEEEEEecCCC-------Cc-ee---eeeeeEEEee
Q 040462 380 NSSLVKGKIVMCSKFDG------------------YTEVHKVGAAGSILFNDQYE-------KV-SF---VVSLPAVAVS 430 (726)
Q Consensus 380 ~~~~~~gkiv~~~~~~~------------------~~~~~~~Ga~g~i~~~~~~~-------~~-~~---~~~~p~~~i~ 430 (726)
...+++||||++++... ...+.++||.++|++|.... +. .. ...+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999977222 58899999999999985321 11 11 1459999999
Q ss_pred hhhHHHHHHHHhcCCCCeEE
Q 040462 431 MENFNSLISYKNSTKKPEAE 450 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~ 450 (726)
.+++..|...++.+...+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999887655543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.065 Score=52.35 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce------------------------------------
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS------------------------------------ 419 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~------------------------------------ 419 (726)
..+++|||+|+.+ .+|..+|+++||+|+|++++......
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999987 67899999999999999988421100
Q ss_pred -eeeeeeEEEeehhhHHHHHHHHhcC
Q 040462 420 -FVVSLPAVAVSMENFNSLISYKNST 444 (726)
Q Consensus 420 -~~~~~p~~~i~~~~~~~l~~~~~~~ 444 (726)
..-.||++-|+..+++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0024889999999999999988643
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.26 Score=46.80 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=55.0
Q ss_pred eeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEec-----------------------chhHHHHhcCceEEE
Q 040462 353 KFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKF-----------------------DGYTEVHKVGAAGSI 409 (726)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------------~~~~~~~~~Ga~g~i 409 (726)
.-++||.+... ....|....+...+++|||||+.+. .|..++.+.||.|+|
T Consensus 21 tg~lVfvGyGi------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 21 TAPVVFAGYGI------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred eEeEEEecCCc------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 34666654321 2345665666677899999999642 478899999999999
Q ss_pred EEecCCCCceeeeeee------EEEeehhhHHHHHHH
Q 040462 410 LFNDQYEKVSFVVSLP------AVAVSMENFNSLISY 440 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~p------~~~i~~~~~~~l~~~ 440 (726)
++++..........+| .++++....+.++..
T Consensus 95 v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 9998765433222222 566777777776654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.35 Score=45.08 Aligned_cols=58 Identities=24% Similarity=0.148 Sum_probs=42.8
Q ss_pred eeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----------------cchhHHHHhcCceEEEEEecCC
Q 040462 353 KFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----------------FDGYTEVHKVGAAGSILFNDQY 415 (726)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------~~~~~~~~~~Ga~g~i~~~~~~ 415 (726)
.-+++|.+... ....|....+...+++|||||+.+ ..|.+++.+.||.|+|++++..
T Consensus 23 ~gelVfvGyG~------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 23 EAPLVFVGYGL------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEeEEEecCCc------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45666654321 234566666667899999999986 1478999999999999999765
Q ss_pred C
Q 040462 416 E 416 (726)
Q Consensus 416 ~ 416 (726)
.
T Consensus 97 ~ 97 (137)
T cd04820 97 S 97 (137)
T ss_pred c
Confidence 3
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.58 Score=43.92 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=43.4
Q ss_pred ceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----------------------cchhHHHHhcCceEE
Q 040462 352 KKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----------------------FDGYTEVHKVGAAGS 408 (726)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------------~~~~~~~~~~Ga~g~ 408 (726)
...++++.+..- ....|....+...+++||||++.+ ..|...+.+.||.|+
T Consensus 20 ~~aelVfvGyGi------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gv 93 (142)
T cd04814 20 KDAPLVFVGYGI------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGV 93 (142)
T ss_pred cceeeEEecCCc------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEE
Confidence 456777765321 124577677777899999999854 247889999999999
Q ss_pred EEEecCC
Q 040462 409 ILFNDQY 415 (726)
Q Consensus 409 i~~~~~~ 415 (726)
|++++..
T Consensus 94 Iii~~~~ 100 (142)
T cd04814 94 LIVHELA 100 (142)
T ss_pred EEEeCCC
Confidence 9999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.62 Score=43.84 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC
Q 040462 382 SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 382 ~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
-+++|||+++.. ..|.+++++.||+|+|++.+...
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 579999999985 77899999999999999998653
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.72 E-value=2 Score=47.40 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=57.4
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC---------ceeeeeeeEEEeehhhHHHHHHHHhcCCC
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK---------VSFVVSLPAVAVSMENFNSLISYKNSTKK 446 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 446 (726)
..+.++|+++..| .+|...++++||.++++.|+.... ......||+++|++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4578999999988 789999999999999999984321 12237899999999999999987777776
Q ss_pred CeEEE
Q 040462 447 PEAEI 451 (726)
Q Consensus 447 ~~~~i 451 (726)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 66655
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.6 Score=35.01 Aligned_cols=47 Identities=28% Similarity=0.188 Sum_probs=29.2
Q ss_pred eEEEEEEEEeccCCC-eeEEEEEEeecceeEEEEec---------ceeeEEEEEEecc
Q 040462 645 TVNFPRIVTNVGLAN-STYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKG 692 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~-~ty~~~v~~~p~g~~v~v~p---------~~~~~~vt~~~~~ 692 (726)
..+++.+|+|.|..+ ...++++.. |.|-++.+.| ++.+++++|+...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred EEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 788999999999754 458888888 9998766655 7777777777654
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=84.87 E-value=18 Score=31.37 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=50.3
Q ss_pred eEEEEEEEEeccCCCeeEEEEEEeecceeEEEEec--------ceeeEEEEEEeccCCCCCCeEEEEEEEEcCCeEEEee
Q 040462 645 TVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP--------EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSP 716 (726)
Q Consensus 645 ~~~~~rtvtnvg~~~~ty~~~v~~~p~g~~v~v~p--------~~~~~~vt~~~~~~~~~~~~~~G~~~~~~~~~~vr~p 716 (726)
..+.+.+++|.|..+..|++.... ...-.++|.| ++.+++|+|.... . .....+.|...-....+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~-~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~--~-~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPE-SLSSFFSVEPPSGFLAPGESVELEVTFSPTK--P-LGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCC-cCCCCEEEECCCCEECCCCEEEEEEEEEeCC--C-CceEEEEEEEEECCeEEEEE
Confidence 566677899999999999987643 2334455555 8888888888533 2 23467888777555678888
Q ss_pred EEEE
Q 040462 717 IVVH 720 (726)
Q Consensus 717 ~~~~ 720 (726)
+-+.
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 7664
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=81.72 E-value=1.7 Score=44.06 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE 416 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~ 416 (726)
..+++|||||+.+ .+|..+++++||+|+|++++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4589999999976 46899999999999999998653
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 726 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-149 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 8e-91 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-11 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 2e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 8e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 2e-05 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-05 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 3e-05 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 3e-05 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-05 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-05 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 4e-05 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 4e-05 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 8e-05 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 9e-05 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-05 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-04 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-04 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 1e-04 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 2e-04 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-04 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-04 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-04 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-04 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 2e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 5e-04 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 5e-04 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 5e-04 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 6e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 6e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 6e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 6e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 6e-04 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 651 bits (1680), Expect = 0.0
Identities = 304/629 (48%), Positives = 397/629 (63%), Gaps = 29/629 (4%)
Query: 112 TTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGK 171
TTRSWDF+G ++ R+ VESNI++GV+D+GIWPES SF DEGF P P KWKG C
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 172 NFTCNNKLIGARYYTTDG--------TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTA 223
NF CN K+IGAR Y RD +GHGTHTASTAAG V A+ YG+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 224 RGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIG 283
RGGVP ARIAAYKVC GC+ TDILAA+DDAIADGVDII++S+GG P + DAIAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 284 AFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343
+FHA+E+GILT NSAGN G N S++PWL+SVAAST DR FV +V +GNG + G S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 344 INSFAMKGKKFPLVHGKEVS-ESCPEFSSQACNPGCINSSLVKGKIVMC-SKFDGYTEVH 401
IN+F + +PLV G+++ + +S+ C +N +L+KGKIV+C + F +
Sbjct: 241 INTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFK 298
Query: 402 KVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFD 461
+ A +L + LP+ + + + + Y S + P A I K+ I +
Sbjct: 299 SLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS 358
Query: 462 APVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTS 521
APVV FSSRGPN D++KPDIS PGV+ILAA +AP+ +R ++I SGTS
Sbjct: 359 APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTS 415
Query: 522 MACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
M+CPH +A YVK+++P WSP+AI+SA+MTTA PMN+ AE A+GSGHVNP+KAV
Sbjct: 416 MSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKAVR 475
Query: 582 PGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRA 641
PGL+Y+ ++ DY+K LC GYN VR I+GD S C G+ DLNYPS VS +
Sbjct: 476 PGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN-TGRVWDLNYPSFGLSVSPS 534
Query: 642 KPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKG 692
+ F F R +T+V STYRA +++ V P ++K F +TV G
Sbjct: 535 QTFNQYFNRTLTSVAPQASTYRAM-ISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI 593
Query: 693 LPESGTVVPATLVWSDGIHSVRSPIVVHT 721
G VV A+LVWSDG+H VRSPI + +
Sbjct: 594 ---KGFVVSASLVWSDGVHYVRSPITITS 619
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 594 bits (1532), Expect = 0.0
Identities = 236/657 (35%), Positives = 346/657 (52%), Gaps = 60/657 (9%)
Query: 112 TTRSWDFMGLNQS--ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNG 169
TT + DF+ LN S + + ++I+ V+DSGIWPES SF D+G PK+WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 170 GKNFT---CNNKLIGARYY------------TTDGTARDKDGHGTHTASTAAGNEVKDAS 214
G F CN KLIGA Y+ T +ARD DGHGTH AS AGN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 215 FYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD 274
+G GTARG P AR+A YK G ++D++AA D A+ADGVD+I++S G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR-FIP 179
Query: 275 FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLG 334
+DAI+I +F AM KG+L SAGN G +G + + +PW++ VA+ TDR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKF 394
NG + G+S+ + P+++ K +S+ + IV+C
Sbjct: 240 NGLKIRGWSLFPARAFVRDSPVIYNKTLSDCS-------SEELLSQVENPENTIVICDDN 292
Query: 395 DGYTE----VHKVGAAGSILFNDQYEKV-SFVVSLPAVAVSMENFNSLISYKNSTKKPEA 449
+++ + + +I ++ S P V V+ + +I+Y ++ P A
Sbjct: 293 GDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTA 352
Query: 450 EILKTE-AIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPED 508
I E + APVVA S+RGP+ I KPDI APGV ILAA P ++ +
Sbjct: 353 TITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTN 412
Query: 509 -KRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEV 567
Y +ESGTSMA PHAA +AA +K+ HP+WSPSAIRSA+MTTA P+++++ +
Sbjct: 413 ILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDS 472
Query: 568 ---------AFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCP 618
G+GHV+P +A++PGL+Y+ + QDY+ +LCS+ + E ++I+ +++
Sbjct: 473 DNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHN 532
Query: 619 KGSNKLSAKDLNYPSMAAQVSRAKPFTVN---FPRIVTNVGLANSTYRAKFFQKFTIISV 675
+ DLNYPS A S FT+ F R VTNVG +TY+AK ++
Sbjct: 533 C---SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKN-STI 588
Query: 676 KVVP---------EKKPFVVTVTGKGLPESGTVVPATLVW--SDGIHSVRSPIVVHT 721
V P EK+ + +T+ G + ++ W +G HSVRSPIV
Sbjct: 589 SVSPQILVFKNKNEKQSYTLTIRYIGDE-GQSRNVGSITWVEQNGNHSVRSPIVTSP 644
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 436 bits (1123), Expect = e-141
Identities = 109/610 (17%), Positives = 203/610 (33%), Gaps = 80/610 (13%)
Query: 135 IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT-------CNNKLIGARYYTT 187
++ VID+G E++ A + K K N+K+ Y+
Sbjct: 19 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSK 78
Query: 188 DGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA--S 245
DG HGTH + +GN A G +P A++ +V +G A +
Sbjct: 79 DGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYA 134
Query: 246 TDILAAFDDAIADGVDIITVSLGG-NIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN 304
+ A DAI G +I +S G + + D +A KG+ + SAGN S
Sbjct: 135 RNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSF 194
Query: 305 LGFV---YSVAPWLMSVAA-STTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGK 360
G + P V + D + + + + K+ P++
Sbjct: 195 GGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTN 254
Query: 361 EVSESCP-EFSSQACNPGCINSSLVKGKIVMC-----SKFDGYTEVHKVGAAGSILFNDQ 414
+ +++ + VKGKI + D + K GA G +++++Q
Sbjct: 255 RFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQ 314
Query: 415 YEKVSFVVS----LPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSS 470
+ + +PA +S ++ L T A + + ++ FSS
Sbjct: 315 DKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNA---TPKVLPTASGTKLSRFSS 371
Query: 471 RGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAV 530
G A +KPDI+APG DIL++V+ KY+ SGTSM+ P A +
Sbjct: 372 WGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGI 416
Query: 531 AAYVKSFHPDWSPSA--------IRSAIMTTAWPMNSSKVNDAE--VAFGSGHVNPVKAV 580
++ + P + +M++A + G+G V+ KA
Sbjct: 417 MGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKAS 476
Query: 581 NPGLIYETSKQDYIKILCSIGY-NESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVS 639
+ + +D + ++ +++ N + ++L Y +
Sbjct: 477 AATMYV--TDKDNTSSKVHLNNVSDKFEVTVNVHNKSD-------KPQELYYQATVQTDK 527
Query: 640 RAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVPEKKPFVVTVTGKGLPESGTV 699
P+++ T A K V + +
Sbjct: 528 VDGKHFALAPKVLYETSWQKITIPA--------------NSSKQVTVPIDASRFSKDLLA 573
Query: 700 VPATLVWSDG 709
+ +G
Sbjct: 574 QMKNGYFLEG 583
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 7e-36
Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 94/474 (19%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
N I +IDSG G N +
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGTGN---------WYQPG 60
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
+ + HGTH A T A + GV +A I KV N +G + ++AA
Sbjct: 61 NNNAHGTHVAGTIAAIA-NNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLVAA 113
Query: 252 FDDAI-ADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
D + + G +++T+SLGG+ ++A+ G+L + +AGN+G + +
Sbjct: 114 IDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPA 169
Query: 311 VAPWLMSVAAST-TDRL--------FVD----------KVLLGNGA----TLSGYSINSF 347
+MSVAA V+ V +G G T+ G S S
Sbjct: 170 SYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSN 229
Query: 348 AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAG 407
+ + S + ++ A +
Sbjct: 230 GVVP--HNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGS 287
Query: 408 SILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAP 467
S + + + + S + + + ++ +A
Sbjct: 288 SYPEINSTKACKTAGAKGIIVYSNSA-LPGLQNPFLVDANSDITVPSVSVDRATG--LAL 344
Query: 468 FSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHA 527
+ G + +S G Y +GTSMA PH
Sbjct: 345 KAKLGQS--------TTVSNQGNQ---------------------DYEYYNGTSMATPHV 375
Query: 528 AAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
+ VA V S+HP+ S S +R+A+ TA ++ + ++ G G +N V A
Sbjct: 376 SGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN---QTGYGMINAVAAKA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 20/119 (16%), Positives = 28/119 (23%), Gaps = 19/119 (15%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FS +IS PG IL ST + R+ G S
Sbjct: 186 HAAFSQYTDQV--------EISGPGEAIL---------STVTVGEGRLADITIGGQSYFS 228
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPG 583
S +A T A + + + V+ V
Sbjct: 229 NGVVPHNRLTPSGTSYAPAP--INASATGALAECTVNGTSFSCGNMANKICLVERVGNQ 285
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+ FSSRGP + LKP++ APG I+AA T Y+ GT+MA
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAAR----ASGTSMGQPINDYYTAAPGTAMAT 362
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGL 584
PH A +AA + HP W+P +++A++ TA + ++ D +G+G VN KA
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIA--YGAGRVNAYKAAYYDN 420
Query: 585 IYETSKQDY 593
+ + Y
Sbjct: 421 YAKLTFTGY 429
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 9e-22
Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 68/290 (23%)
Query: 64 SSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEE-----------VVSVFPSRTLQFHT 112
+G + +Y A K+ + +A + + V + ++
Sbjct: 56 DFLGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV 114
Query: 113 TRSWDFMGLNQSITRKHSVE--------SNIIIGVIDSGIWPESESFSDEGFGPAPKKWK 164
GL++S + + S I IG+ID+GI +
Sbjct: 115 ETE----GLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDL------------Q 158
Query: 165 GACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTAR 224
G G +F T D +GHGTH AS AAG A+ G +G A
Sbjct: 159 GKVIGWVDFVNG-----------KTTPYDDNGHGTHVASIAAGT---GAASNGKYKGMA- 203
Query: 225 GGVPSARIAAYKVCNPSGCAST-DILA----AFDDAIADGVDIITVSLGG---NIPVDFI 276
P A++ KV N G S DI+ A + G+ +I +SLG + D +
Sbjct: 204 ---PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSL 260
Query: 277 KDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS--VAPWLMSVAASTTD 324
A+ +A + G++ + +AGNSG N V S A +++V A
Sbjct: 261 SQAVN----NAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY 306
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 36/193 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I ++D+G+ G GG +F N D T +
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFVDN-----------DSTPQ 66
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
+ +GHGTH A AA G P A I A +V + SG + +
Sbjct: 67 NGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSGSGTWTAVANG 118
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
A G +I++SLGG + ++ A+ +A KG + + +AGN+G+ +
Sbjct: 119 ITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAY 174
Query: 312 APWLMSVAASTTD 324
++VA++ +
Sbjct: 175 YSNAIAVASTDQN 187
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 28/117 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+ FS+ G D++APG I ST P Y+ SGTSMA
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIY---------STYPTST----YASLSGTSMAT 228
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
PH A VA + S S S IR+AI TA ++ + + G VN KAV
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGRVNAYKAVQ 278
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-24
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 27/117 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FSS GP + D+ APGV I ST P +K Y +GTSMA
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQ---------STLPGNK----YGAYNGTSMAS 224
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
PH A AA + S HP+W+ + +RS++ T + S +G G +N A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF------YYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 46/199 (23%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
SN+ + VIDSGI GG + + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV--------------AGGASMVPSE----------TNPFQ 59
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST-DILA 250
D + HGTH A T A G GV PSA + A KV G I+
Sbjct: 60 DNNSHGTHVAGTVAAL--------NNSIGVL--GVAPSASLYAVKVLGADGSGQYSWIIN 109
Query: 251 AFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
+ AIA+ +D+I +SLGG +K A+ A+ G++ + +AGN G++ G +
Sbjct: 110 GIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTS-GSSST 164
Query: 311 V-----APWLMSVAASTTD 324
V P +++V A +
Sbjct: 165 VGYPGKYPSVIAVGAVDSS 183
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 2e-23
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 36/193 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I VID+G+ G G +F N D
Sbjct: 31 SGQEIAVIDTGVDYTHPDL------------DGKVIKGYDFVDN-----------DYDPM 67
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D + HGTH A AA G+ P+ RI A + + +G + DI A
Sbjct: 68 DLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNGSGTLSDIADA 119
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
A G ++I +SLG + +++A+ +A KG + + +AGN+GS+ F +
Sbjct: 120 IIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTFEPAS 175
Query: 312 APWLMSVAASTTD 324
+++V A
Sbjct: 176 YENVIAVGAVDQY 188
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 28/117 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+A FS+ G D+ APGVDI+ ST ++ Y+ SGTSMA
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIV---------STITGNR----YAYMSGTSMAS 229
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
PH A +AA + S + IR AI TA ++ + F G +N AV
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTG-----TYFKYGRINSYNAVT 279
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FSS G + ++ APG + ST P + Y+ +GTSMA
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVY---------STYPTNT----YATLNGTSMAS 223
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
PH A AA + S HP+ S S +R+ + +TA + SS +G G +N A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF------YYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 9e-23
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 47/199 (23%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+N+ + V+D+GI + G G +F +
Sbjct: 24 ANVKVAVLDTGIQASHPDLNVVG--------------GASFV-----------AGEAYNT 58
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST-DILA 250
D +GHGTH A T A G GV PS + A KV N SG S I++
Sbjct: 59 DGNGHGTHVAGTVAAL--------DNTTGVL--GVAPSVSLYAVKVLNSSGSGSYSGIVS 108
Query: 251 AFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
+ A +G+D+I +SLGG +K A+ +A +G++ + +AGNSG++ G +
Sbjct: 109 GIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNS-GSTNT 163
Query: 311 V-----APWLMSVAASTTD 324
+ +++V A ++
Sbjct: 164 IGYPAKYDSVIAVGAVDSN 182
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 6e-23
Identities = 54/269 (20%), Positives = 93/269 (34%), Gaps = 32/269 (11%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
V ++SR P + APG I + P T K + +GTSMA
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASV-----PQFTMS------KSQLMNGTSMAA 465
Query: 525 PHAAAVAA----YVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
PH A A +K + ++SP +I+ AI TA + A G G +N KA
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPF----AQGHGLLNVEKAF 521
Query: 581 NPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYP-SMAAQVS 639
+ SK + ++ +G N + I + + + A
Sbjct: 522 EHLTEHRQSKDNMLRFSVRVGNNAD--KGIHLRQGVQRNSIDYNVYIEPIFYNDKEADPK 579
Query: 640 RAKPFTVNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVPEKKP-----FVVTVTGKGLP 694
F V I + + + + + I+V+V P V+
Sbjct: 580 DKFNFNVRLNLIASQPWVQCGAFLDLSYGTRS-IAVRVDPTGLQPGVHSAVIRAYDTDCV 638
Query: 695 ESGTV--VPATLVWSDGIHSVRSPIVVHT 721
+ G++ +P T+V + S ++ V
Sbjct: 639 QKGSLFEIPVTVVQPHVLESDQNTPVFEP 667
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 3e-16
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 21/150 (14%)
Query: 187 TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS- 245
HGTH +S A+GN + G P+A+I + + + +
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSME 312
Query: 246 --TDILAAFDDAI-----ADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSA 298
T ++ A + +D+I +S G + + + G++ + SA
Sbjct: 313 TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASA 372
Query: 299 GNSGSNLGFVYSVA----PWLMSVAASTTD 324
GN G L V + P L+ V A +
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYVSP 402
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 8e-23
Identities = 40/116 (34%), Positives = 50/116 (43%), Gaps = 27/116 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FS G DI APGV++ ST P Y+ +GTSMA
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQ---------STYPGST----YASLNGTSMAT 218
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
PH A AA VK +P WS IR+ + TA + S+ +GSG VN A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN------LYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 42/194 (21%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S + + V+D+GI + + GG +F + + +
Sbjct: 24 SGVKVAVLDTGISTHPD-LNI--------------RGGASFV-----------PGEPSTQ 57
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST-DILA 250
D +GHGTH A T A G GV PSA + A KV SG S I
Sbjct: 58 DGNGHGTHVAGTIAAL--------NNSIGVL--GVAPSAELYAVKVLGASGSGSVSSIAQ 107
Query: 251 AFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
+ A +G+ + +SLG P ++ A+ A +G+L + ++GNSG+ +
Sbjct: 108 GLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSISYPA 163
Query: 311 VAPWLMSVAASTTD 324
M+V A+ +
Sbjct: 164 RYANAMAVGATDQN 177
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 465 VAPFSSRGPNAILPDIL----KPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGT 520
VA +SSRG + D + +ISAPG + ST Y+ SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVY---------STWYNGG----YNTISGT 249
Query: 521 SMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDA----EVAFGSGHVN 575
SMA PH + +AA + + +P S + +RS + A ++ A + A G G
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-21
Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 40/201 (19%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I I V+D+G+ K+FT + +
Sbjct: 26 SGINIAVLDTGVNTSHPDL------------VNNVEQCKDFTGATT-------PINNSCT 66
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST-DILA 250
D++GHGTH A TA + D G GV P A + AYKV SG + DI A
Sbjct: 67 DRNGHGTHVAGTALADGGSD------QAGIY--GVAPDADLWAYKVLLDSGSGYSDDIAA 118
Query: 251 AFDDAIADGV-----DIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
A A II++SLG + I A+ +A KG+L + +AGNSG +
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGYSQ 174
Query: 306 GFVYS--VAPWLMSVAASTTD 324
G + P ++VAA
Sbjct: 175 GTIGYPGALPNAIAVAALENV 195
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 1e-21
Identities = 34/126 (26%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAV-----SPLAPISTDPEDKRRVKYS 515
VA FSSR + APGV IL+ V + + Y
Sbjct: 324 GTFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYD 375
Query: 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
GTSMA PH V A + P+ P IR + TA+ N + + G G V
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDH---DTGYGLVK 432
Query: 576 PVKAVN 581
A+
Sbjct: 433 LDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 3e-19
Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 48/219 (21%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+NII+ V+D+G+ +G G + +L +
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDEELPA------GTDSS 195
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS------- 245
GTH A T A G+G G P A+I + +
Sbjct: 196 YGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNGYVGD 246
Query: 246 TDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
+ A A G ++ S GG +K+A +AME G++ + SAGN+ S+
Sbjct: 247 DYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAGNNTSDS 302
Query: 306 GFVY-SVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343
Y + P ++ VAA G ++G+S
Sbjct: 303 HHQYPAGYPGVIQVAALDYY---------GGTFRVAGFS 332
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 1e-21
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 22/121 (18%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
FS+ G N K I APG +IL P + + +GTSMA
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEIL---------GAQPCTE---EPVRLTGTSMAA 295
Query: 525 PHAAAVAAYVKSFH----PDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
P ++A + S A+R+A++ TA P + V + E G VN A+
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPE-RCLRGFVNIPGAM 354
Query: 581 N 581
Sbjct: 355 K 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 7e-17
Identities = 33/217 (15%), Positives = 63/217 (29%), Gaps = 38/217 (17%)
Query: 132 ESNIIIGVIDSGIWPESESFSDEGFGPAPKKWK--GACNGGKNFTCNNKLI--------- 180
+ I I +ID F W +++ +
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEK 107
Query: 181 ---GARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKV 237
+ H H ST G E + +G+ P+ R+
Sbjct: 108 EEALEAVIPDTKDRIVLNDHACHVTSTIVGQE--HSPVFGIA--------PNCRVINMPQ 157
Query: 238 -----CNPSGCAST-DILAAFDDAIADGVDIITVSLGGN----IPVDFIKDAIAIGAFHA 287
N S ++ A D A+ G +II + + + AI
Sbjct: 158 DAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK----KC 213
Query: 288 MEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTD 324
+ +L ++ GN+ + + +V P ++V A+ D
Sbjct: 214 QDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
S G N + DI+APG +I P+ K SGTS A
Sbjct: 236 GITGSRFGNNWV-------DIAAPGQNIT---------FLRPDAK----TGTGSGTSEAT 275
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
+ V A + S +P + + ++ ++ +A S +N KA++
Sbjct: 276 AIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKV----TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 39/238 (16%), Positives = 69/238 (28%), Gaps = 59/238 (24%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ +++ V+DSG+ + +FT + +
Sbjct: 44 TPVVVSVVDSGV----AFIGG---------LSDSEFAKFSFTQDG------SPFPVKKSE 84
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST----DI 248
HGT AS A YG+ G P A I++ +V S +
Sbjct: 85 ALYIHGTAMASLIASR-------YGIY-----GVYPHALISSRRVIPDGVQDSWIRAIES 132
Query: 249 LAAFDDAIADGVDIITVSLGGNIPVD---FIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
+ + II +S G + + L + + GN G+++
Sbjct: 133 IMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGNDGADI 188
Query: 306 GFVYSVAP-----------------WLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346
+ + ++ VAA R VL G G T S + N
Sbjct: 189 RKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNW 246
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 51/299 (17%), Positives = 88/299 (29%), Gaps = 71/299 (23%)
Query: 64 SSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFHTTRSWDF----- 118
+G +V ++ + KL M V V SW
Sbjct: 20 LGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQ 78
Query: 119 -----------MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGAC 167
+ + S I + V+D+G+ +
Sbjct: 79 PAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL------------AANI 126
Query: 168 NGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV 227
+ T D++GHGTH T A G GV
Sbjct: 127 AWCVSTLRGK------VSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV--GV 170
Query: 228 -PSARIAAYKVCNPSGCAST-DILAAFDDAIAD--------------------GVDIITV 265
P +I + +V + G S DI + AI ++I++
Sbjct: 171 APGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISM 230
Query: 266 SLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTD 324
SLGG ++ D I A GI+ + ++GN G+ + P +++V A ++
Sbjct: 231 SLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 285
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 39/130 (30%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+A FS+R P ++SAPGVDIL ST P+D Y GT+MA
Sbjct: 288 IASFSNRQP----------EVSAPGVDIL---------STYPDDS----YETLMGTAMAT 324
Query: 525 PHAAAVAAYVKSFH-------------PDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGS 571
PH + V A +++ + D S + +R + TA + + + +G
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGY 381
Query: 572 GHVNPVKAVN 581
G V AV
Sbjct: 382 GVVRAALAVQ 391
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 2e-20
Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 37/217 (17%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I+ V D+G+ +D A + K+ A
Sbjct: 22 QGQIVAVADTGLDTGR---NDSSMHEAFR---------------GKITALYALGRTNNAN 63
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST---DI 248
D +GHGTH A + GN G+ G+ P A + + + G ++
Sbjct: 64 DTNGHGTHVAGSVLGN------------GSTNKGMAPQANLVFQSIMDSGGGLGGLPSNL 111
Query: 249 LAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV 308
F A + G I T S G + + D+ + + + + L +AGN G N G +
Sbjct: 112 QTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTI 170
Query: 309 YS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343
+ A ++V A+ R S
Sbjct: 171 SAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSS 207
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 1e-17
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
VA FSSRGP +KPD+ APG IL+A S LAP S+ + KY+ GTSMA
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 525 PHAAAVAAYVKSFHPDW-----SPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKA 579
P A A ++ PS +++A++ A + N G G V K+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNG---NQGWGRVTLDKS 315
Query: 580 VNPGLIYETS 589
+N + E+S
Sbjct: 316 LNVAYVNESS 325
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 49/205 (23%), Positives = 72/205 (35%), Gaps = 46/205 (22%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ IIGVID+G + GG N T + Y +
Sbjct: 41 AGQIIGVIDTGCQVDHPDL------------AERIIGGVNLTTD-------YGGDETNFS 81
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV-PSARIAAYKVCNPSGCAST-DILA 250
D +GHGTH A T A G G GV P A + K + G I
Sbjct: 82 DNNGHGTHVAGTVAAA--------ETGSGVV--GVAPKADLFIIKALSGDGSGEMGWIAK 131
Query: 251 AFDDAI------ADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN 304
A A+ + + IIT+SLGG + + DA+ +A+ + + +AGN G
Sbjct: 132 AIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEGDG 187
Query: 305 LGFVYSV-----APWLMSVAASTTD 324
+++V A D
Sbjct: 188 REDTNEFAYPAAYNEVIAVGAVDFD 212
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 29/121 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
++ F++ + DI APGV I ST + Y+ SGT+MA
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIK---------STYLDSG----YAELSGTAMAA 253
Query: 525 PHAAAVAAYVKSFHPD-----WSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKA 579
PH A A + + D S + I + ++ A P+ + G ++ V+
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTA---QAEGNGFLTLDLVER 310
Query: 580 V 580
+
Sbjct: 311 I 311
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 5e-20
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRV---------KYS 515
++ FS+ G N DI+APG + + +Y
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 516 IESGTSMACPHAAAVAAYVKS-FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHV 574
++GT++A P + A + +H + P + N+ + +G G +
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR----YGHGEL 457
Query: 575 NPVKAVN 581
+ KA+N
Sbjct: 458 DVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-18
Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 71/222 (31%)
Query: 133 SNIIIGVIDSGI-----------WPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIG 181
+N I +ID+G+ +S++ NG +
Sbjct: 146 ANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVP-------------LNGFRGTEPE----- 187
Query: 182 ARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGV----PSARIAAYKV 237
D+ GHGT + + N G + P+ + Y+V
Sbjct: 188 --ETGDVHDVNDRKGHGTMVSGQTSAN----------------GKLIGVAPNNKFTMYRV 229
Query: 238 CNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDF----------------IKDAIA 281
+ A A DG +I +S+G I +D ++ AI
Sbjct: 230 FGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAIN 289
Query: 282 IGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTT 323
+A +K + + +AGN G ++ +
Sbjct: 290 ----YAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV 327
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 39/130 (30%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
+A FS+R P ++SAPGVDIL ST P+D Y GT+MA
Sbjct: 213 IASFSNRQP----------EVSAPGVDIL---------STYPDDS----YETLMGTAMAT 249
Query: 525 PHAAAVAAYVKSFH-------------PDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGS 571
PH + V A +++ + D S + +R + TA + + + +G
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGY 306
Query: 572 GHVNPVKAVN 581
G V AV
Sbjct: 307 GVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 8e-18
Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 52/213 (24%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I + V+D+G+ + + + + T
Sbjct: 29 SVIQVAVLDTGVDYDHPDL------------AANIAWCVST------LRGKVSTKLRDCA 70
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D++GHGTH T A G G P +I + +V + G S DI
Sbjct: 71 DQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIG 121
Query: 252 FDDAIAD--------------------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKG 291
+ AI ++I++SLGG ++ D I A G
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAG 177
Query: 292 ILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTD 324
I+ + ++GN G+ + P +++V A ++
Sbjct: 178 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 210
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 28/123 (22%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVK---YSIESGTSM 522
A FS+ G + D++APG DIL ST RR YS +GTSM
Sbjct: 235 ASFSNYGVD--------VDLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGTSM 277
Query: 523 ACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVK 578
A PH + VAA V S + + +P+ ++ +++T P N A GSG V+
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEA 333
Query: 579 AVN 581
AVN
Sbjct: 334 AVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 36/214 (16%)
Query: 133 SNIIIGVIDSGI----------WPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGA 182
N+++ V+D+GI P + S+ ++ N
Sbjct: 32 QNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWA--CG 89
Query: 183 RYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG 242
D HG+H A T A GV A++ + G
Sbjct: 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVA--------YGAKVVPVRALGRCG 141
Query: 243 CASTDILAAFDDAI----------ADGVDIITVSLGGNIPVD-FIKDAIAIGAFHAMEKG 291
+DI A + +I +SLG + + I A G
Sbjct: 142 GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLG 197
Query: 292 ILTLNSAGNSGSNLGFVY-SVAPWLMSVAASTTD 324
L + +AGN N + + ++SV A+T+
Sbjct: 198 ALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR 231
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 2e-16
Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 59/307 (19%)
Query: 35 YIVYIGSLPKGEYVTS-SHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKL 93
Y+V L + +++ LQ ++ + GF K++ +
Sbjct: 78 YVV---VLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELA 134
Query: 94 ASMEEVVSVFPSRTLQFHTTRSWDFMGLNQSITRKHSVE--------SNIIIGVIDSGIW 145
+ V + ++ + W L + ++ + S + + ++D+ I
Sbjct: 135 LKLPHVDYIEEDSSVFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQ 190
Query: 146 PESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTA 205
+ G T + A D HGTH A
Sbjct: 191 SDHREI----------------EGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVV 234
Query: 206 AGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAAFDDAIAD------ 258
+G + GV A+G A + + +V N G + L +
Sbjct: 235 SGRD------AGV----AKG----ASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPV 280
Query: 259 GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY-SVAPWLMS 317
G ++ + L G + A G++ + +AGN + + AP +++
Sbjct: 281 GPLVVLLPLAGG-YSRVLNAACQ----RLARAGVVLVTAAGNFRDDACLYSPASAPEVIT 335
Query: 318 VAASTTD 324
V A+
Sbjct: 336 VGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 4e-12
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
D+ APG DI+ + + +SGTS A H A +AA + S P+ +
Sbjct: 360 DLFAPGEDII---------GASSDCST--CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 544 SAIRSAIMTTA 554
+ +R ++ +
Sbjct: 409 AELRQRLIHFS 419
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 21/89 (23%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
+ FS+ G D+ APG I S + Y SGTSMA P
Sbjct: 186 SSFSNWGSCV--------DLFAPGSQIK---------SAWYDGG----YKTISGTSMATP 224
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A VAA + +P + + + A
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 46/196 (23%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ VID+G+ E F G G +F N D +
Sbjct: 29 FGVTAYVIDTGVNNNHEEFG------------GRSVSGYDFVDN-----------DADSS 65
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D +GHGTH A T G++ YGV + I +V + SG +T +++
Sbjct: 66 DCNGHGTHVAGTIGGSQ------YGVA--------KNVNIVGVRVLSCSGSGTTSGVISG 111
Query: 252 FDDAIADGV--DIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY 309
D + + +SLGG + A+ A++ G+ + +AGNS ++
Sbjct: 112 VDWVAQNASGPSVANMSLGGG-QSTALDSAVQ----GAIQSGVSFMLAAGNSNADACNTS 166
Query: 310 -SVAPWLMSVAASTTD 324
+ P ++V ++T+
Sbjct: 167 PARVPSGVTVGSTTSS 182
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
+ FS+ G DI APG I S+ + SGTSMA P
Sbjct: 188 SSFSNYGTCL--------DIYAPGSSIT---------SSWYTSNS--ATNTISGTSMASP 228
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A VAA +P+ SP+ + + + T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S + VID+G+ F G + G +F N D A
Sbjct: 31 SGVTAFVIDTGVLNTHNEFG------------GRASSGYDFIDN-----------DYDAT 67
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D +GHGTH A T G+ YGV + + +V N SG S ++A
Sbjct: 68 DCNGHGTHVAGTIGGST------YGVA--------KNVNVVGVRVLNCSGSGSNSGVIAG 113
Query: 252 FDDAIADGV--DIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY 309
+ + + +SLGG DA+ A+ GI + +AGN SN Y
Sbjct: 114 INWVKNNASGPAVANMSLGGG-ASQATDDAVN----AAVAAGITFVVAAGNDNSNACN-Y 167
Query: 310 SVA--PWLMSVAASTTD 324
S A ++V ++T++
Sbjct: 168 SPARAADAITVGSTTSN 184
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
A FS+ G D+ APG I S +GTSMA P
Sbjct: 186 ASFSNYGSCV--------DLFAPGASIP---------SAWYTSDT--ATQTLNGTSMATP 226
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A VAA +P +P+++ SAI+ A
Sbjct: 227 HVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 48/196 (24%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ + VID+GI F G G + G +
Sbjct: 31 RGVNVYVIDTGIRTTHREFG------------GRARVGYDAL-------------GGNGQ 65
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D +GHGTH A T G YGV + + A +V + +G ST ++A
Sbjct: 66 DCNGHGTHVAGTIGGVT------YGVA--------KAVNLYAVRVLDCNGSGSTSGVIAG 111
Query: 252 FDDAIADGVD--IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY 309
D + + +SLGG + +A+ +++ G++ +AGN +N
Sbjct: 112 VDWVTRNHRRPAVANMSLGGG-VSTALDNAVK----NSIAAGVVYAVAAGNDNANACNYS 166
Query: 310 -SVAPWLMSVAASTTD 324
+ ++V A+T+
Sbjct: 167 PARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 9e-13
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
D+ APG DI+ A + +SGTS A H A +AA + S P+ +
Sbjct: 208 DLFAPGEDIIGAS-----SDCS------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 544 SAIRSAIMTTA 554
+ +R ++ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 43/194 (22%)
Query: 139 VIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198
++D+ I + G T + A D HG
Sbjct: 32 LLDTSIQSDHREI----------------EGRVMVTDFENVPEEDGTRFHRQASKCDSHG 75
Query: 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAAFDDAIA 257
TH A +G + GV A+G A + + +V N G + L +
Sbjct: 76 THLAGVVSGRD------AGV----AKG----ASMRSLRVLNCQGKGTVSGTLIGLEFIRK 121
Query: 258 D------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY-S 310
G ++ + L G + A G++ + +AGN + +
Sbjct: 122 SQLVQPVGPLVVLLPLAGG-YSRVLNAACQ----RLARAGVVLVTAAGNFRDDACLYSPA 176
Query: 311 VAPWLMSVAASTTD 324
AP +++V A+
Sbjct: 177 SAPEVITVGATNAQ 190
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
+ FS+ G DI APG I ST + + SGTSMA P
Sbjct: 191 STFSNYGRVV--------DIFAPGTSIT---------STWIGGR----TNTISGTSMATP 229
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A +AAY+ S A+ I T +
Sbjct: 230 HIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 28/149 (18%)
Query: 185 YTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA 244
+ TARD GHGTH A T +GV I KV + SG
Sbjct: 58 KSYASTARDGHGHGTHCAGTIGSKT------WGVA--------KKVSIFGVKVLDDSGSG 103
Query: 245 ST-DILAAFDDAIADGVD-------IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLN 296
S +I+A D +D + ++SLGG + A A G+
Sbjct: 104 SLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG-YSAALNQAAA----RLQSSGVFVAV 158
Query: 297 SAGNSGSNLGFVY-SVAPWLMSVAASTTD 324
+AGN + + P + +V A+ ++
Sbjct: 159 AAGNDNRDAANTSPASEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 466 APFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525
+ FS+ G DI PG DIL ST SGTSMA P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTDIL---------STWIGGS----TRSISGTSMATP 228
Query: 526 HAAAVAAYVKSFHPDWSPSAIRSAIMTTA 554
H A +AAY+ + + ++ I TA
Sbjct: 229 HVAGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 28/149 (18%)
Query: 185 YTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCA 244
T ++RD +GHGTH A T YGV ++ KV + +G
Sbjct: 57 KTYYYSSRDGNGHGTHCAGTVGSRT------YGVA--------KKTQLFGVKVLDDNGSG 102
Query: 245 ST-DILAAFDDAIADGVD-------IITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLN 296
I+A D +D + + ++SLGG + A A G++
Sbjct: 103 QYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-YSSSVNSAAA----RLQSSGVMVAV 157
Query: 297 SAGNSGSNLGFVY-SVAPWLMSVAASTTD 324
+AGN+ ++ + P + +V AS
Sbjct: 158 AAGNNNADARNYSPASEPSVCTVGASDRY 186
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 40/205 (19%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+ ++ ++D G+ E+E G +F N L R
Sbjct: 54 AGVVAAIVDDGLDYENEDL-------KDNFCA---EGSWDFNDNTNLPKPRL-------- 95
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
D HGT A A K +F GVG G +A+I+ ++ + + D A+
Sbjct: 96 SDDYHGTRCAGEIAA--KKGNNFCGVGVG------YNAKISGIRILSGDI-TTEDEAASL 146
Query: 253 DDAIADGVDIITVSLGG-------NIPVDFIKDAIAIGAFHAME-KGILTLNSAGNSGSN 304
D DI + S G P D +K A+ G + KG + + ++GN G+
Sbjct: 147 IYG-LDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTR 205
Query: 305 LGFV----YSVAPWLMSVAASTTDR 325
Y+ + + +++ A
Sbjct: 206 GDNCNYDGYTNSIYSITIGAIDHKD 230
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 25/176 (14%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
P+S + S G I S+D + + GTS A
Sbjct: 232 HPPYSEGCSAVMAV----TYSSGSGEYIH---------SSDINGRC---SNSHGGTSAAA 275
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEV---------AFGSGHVN 575
P AA V + +P+ + ++ + +A + + D +G G ++
Sbjct: 276 PLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKID 335
Query: 576 PVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNY 631
K + +E L ++ ++S + S L +
Sbjct: 336 AHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKR 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 9e-08
Identities = 74/533 (13%), Positives = 143/533 (26%), Gaps = 201/533 (37%)
Query: 247 DILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIA-------IGAFHAMEKGILTLNSAG 299
DIL+ F+DA D D V D K ++ I + A+ + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQ-------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 300 NSGSNL--GFVYSVA----PWLMS------VAASTTDRLFVDKV--LLGNGATLSGYSIN 345
+ + FV V +LMS S R+++++ L + + Y+++
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 346 SFAMKGK-----------KFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVM---- 390
K K L+ G G GK +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGV---------------LGS-------GKTWVALDV 170
Query: 391 CSKFDGYTEVHKVGAAGSILFNDQ--YEKVSFVVSLPAVAVSMENFNSLI--SYKNSTKK 446
C + +V + + + + S V ++ I ++ + +
Sbjct: 171 CLSY----KVQCK-------MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 447 PEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506
L+ +I+ ++ S N +L +L V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLK--SKPYENCLL--------------VLLNVQ-------NA 256
Query: 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAI-MTTAWPMNSSKVNDA 565
+ +F + I +TT +V D
Sbjct: 257 KA-------------------------WNAF-------NLSCKILLTT----RFKQVTDF 280
Query: 566 EVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLS 625
A + H+ + + L + K +K L
Sbjct: 281 LSAATTTHI-SLDHHSMTLTPDEVKSLLLKYL-------------------------DCR 314
Query: 626 AKDLNYPSMAAQVSRAKPFTVNFPRIVTNVG--LANSTYRAKFFQKF------TII--SV 675
+DL P + PR ++ + + + ++ TII S+
Sbjct: 315 PQDL--PREVLTTN---------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 676 KVV--PEKKP----FVVTVTGKGLPESGTVVPATL--VWSDGIHSVRSPIVVH 720
V+ E + V P S + L +W D I S +V
Sbjct: 364 NVLEPAEYRKMFDRLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 39/203 (19%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I++ ++D GI A GA + + T
Sbjct: 38 HGIVVSILDDGIEKNHPDL-------AGNYDPGASFDVNDQDPD--------PQPRYTQM 82
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
+ + HGT A A V + GVG +ARI ++ + TD + A
Sbjct: 83 NDNRHGTRCAGEVAA--VANNGVCGVGVA------YNARIGGVRMLDGEV---TDAVEAR 131
Query: 253 DDAIA-DGVDIITVSLGGNI-------PVDFIKDAIAIGAFHAME-KGILTLNSAGNSGS 303
+ + + I + S G P ++A G G + + ++GN G
Sbjct: 132 SLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGR 191
Query: 304 NLGFV----YSVAPWLMSVAAST 322
Y+ + + +S++++T
Sbjct: 192 EHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 17/141 (12%)
Query: 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
+ + ++TD K +GTS + P AA + A + + +
Sbjct: 230 LATTYSSGNQ---NEKQIVTTDLRQKC---TESHTGTSASAPLAAGIIALTLEANKNLTW 283
Query: 544 SAIRSAIMTTAWPMNSSKV--------NDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIK 595
++ ++ T+ P + + ++G G ++ V + T
Sbjct: 284 RDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRK- 342
Query: 596 ILCSIGYNESIVRSISGDNST 616
C +
Sbjct: 343 --CIVEILVEPKDIGKRLEVR 361
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.97 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.95 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.9 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.67 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.45 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.45 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.12 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 91.89 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 90.61 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 86.3 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 82.7 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 82.17 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 80.88 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-125 Score=1089.69 Aligned_cols=594 Identities=40% Similarity=0.649 Sum_probs=539.4
Q ss_pred cCCCccccccch--hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcc---cCCceeeeeeecC
Q 040462 112 TTRSWDFMGLNQ--SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNF---TCNNKLIGARYYT 186 (726)
Q Consensus 112 ~~~s~~~~g~~~--~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f---~~n~klig~~~~~ 186 (726)
|+++|+|+|+++ .+|+.+.+|+||+|||||||||++||+|.+.|++|+|.+|+|.|+.+.+| .||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 578999999984 59999999999999999999999999999999999999999999999988 6999999999995
Q ss_pred ------------CCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHH
Q 040462 187 ------------TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDD 254 (726)
Q Consensus 187 ------------~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ 254 (726)
+..+++|.+||||||||||||+.+++.+++|++.|++.||||+|+|++||+|+..||..+++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 23578899999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeC
Q 040462 255 AIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLG 334 (726)
Q Consensus 255 A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g 334 (726)
|+++|+||||||||.. ...+..+++++++++|.++||+||+||||+|+...++++.+||+|+|||++.||.|.+.+.++
T Consensus 161 A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 161 AVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 9999999999999987 567888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCc--cceEEEEEe-----cchhHHHHhcCceE
Q 040462 335 NGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLV--KGKIVMCSK-----FDGYTEVHKVGAAG 407 (726)
Q Consensus 335 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkiv~~~~-----~~~~~~~~~~Ga~g 407 (726)
|++++.|.+++........+|+++.. ....|.+..+++.++ +||||+|++ .+|..+++++|+.|
T Consensus 240 ng~~~~g~sl~~~~~~~~~~plv~~~---------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g 310 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAFVRDSPVIYNK---------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAA 310 (649)
T ss_dssp TSCEEEEECCCSSCBCEEEEEEECCT---------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEE
T ss_pred CCcEEeeeecccCcccCcceeeEecc---------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceE
Confidence 99999999998877667789999965 346899999998888 999999998 67889999999999
Q ss_pred EEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEE-eeeeeecCCCCCcccccCCCCCCCCCCCCcCCceE
Q 040462 408 SILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEI-LKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDIS 486 (726)
Q Consensus 408 ~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~ 486 (726)
+|++|+........+.+|.++|+.++++.|++|++++.+++++| +..+..+..+++.++.||||||+...+++|||||+
T Consensus 311 ~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~ 390 (649)
T 3i6s_A 311 IFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDIL 390 (649)
T ss_dssp EEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEE
T ss_pred EEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEE
Confidence 99999885555556899999999999999999999999999999 88888888899999999999999988899999999
Q ss_pred eCCccEEeecCCCCCCCCCCCCc-cccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC----
Q 040462 487 APGVDILAAVSPLAPISTDPEDK-RRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK---- 561 (726)
Q Consensus 487 APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~---- 561 (726)
|||++|+++|+....+.....+. +...|..+||||||||||||++|||||+||+|||++||++||+||+++...+
T Consensus 391 APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~ 470 (649)
T 3i6s_A 391 APGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470 (649)
T ss_dssp EECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCE
T ss_pred eCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccc
Confidence 99999999999865544433333 4468999999999999999999999999999999999999999999876532
Q ss_pred -----CCCCCCcCCCCccCccccCCCcccccCChhhHHHhhhcCCCCcceeeeecCCCcc--cCCCCCCCCCCCCCCceE
Q 040462 562 -----VNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNST--CPKGSNKLSAKDLNYPSM 634 (726)
Q Consensus 562 -----~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~~ln~ps~ 634 (726)
.++.+++||+|+|||.+|++||||||++.+||++|||++||+.++|+.|++.+++ |+. ...|||||||
T Consensus 471 ~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~-----~~~~lNyPs~ 545 (649)
T 3i6s_A 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN-----PSADLNYPSF 545 (649)
T ss_dssp ETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC-----CCCCCCCSSE
T ss_pred ccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC-----chhhcCCCcE
Confidence 2457899999999999999999999999999999999999999999999998878 975 2679999999
Q ss_pred EEee-cCCCCce--EEEEEEEEeccCCCeeEEEEEEeecceeEEEEec---------ceeeEEEEEEeccCCCCCCeEEE
Q 040462 635 AAQV-SRAKPFT--VNFPRIVTNVGLANSTYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKGLPESGTVVPA 702 (726)
Q Consensus 635 ~~~~-~~~~~~~--~~~~rtvtnvg~~~~ty~~~v~~~p~g~~v~v~p---------~~~~~~vt~~~~~~~~~~~~~~G 702 (726)
++++ +.+.... ++|+|||||||+..++|+++|++ |+|++|+|+| |+++|+|||+.+.. ..+.|+||
T Consensus 546 ~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~-p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~-~~~~~~fg 623 (649)
T 3i6s_A 546 IALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKA-PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD-EGQSRNVG 623 (649)
T ss_dssp EEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEEC-CTTEEEEEESSEEEECC-CCEEEEEEEEEECCC----CCCEE
T ss_pred EeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEec-CCCCEEEEECCEEEEecCCCEEEEEEEEEeccc-CCCceEEE
Confidence 9998 4431112 89999999999989999999999 9999999999 99999999998754 45679999
Q ss_pred EEEEEc--CCeEEEeeEEEEee
Q 040462 703 TLVWSD--GIHSVRSPIVVHTQ 722 (726)
Q Consensus 703 ~~~~~~--~~~~vr~p~~~~~~ 722 (726)
+|+|+| |+|.|||||+|++.
T Consensus 624 ~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 624 SITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEcCCCCeEEEEeEEEEEc
Confidence 999998 99999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-119 Score=1047.04 Aligned_cols=599 Identities=51% Similarity=0.868 Sum_probs=516.8
Q ss_pred cCCCccccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecC-----
Q 040462 112 TTRSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT----- 186 (726)
Q Consensus 112 ~~~s~~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~----- 186 (726)
|+++|+|+|+++.+|.+..+|+||+|||||||||++||+|.|+++++++.+|+|.|+.+.+|.||+|+||+++|.
T Consensus 1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~~~ 80 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPI 80 (621)
T ss_dssp CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSSSC
T ss_pred CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCCcc
Confidence 689999999997889999999999999999999999999999999999999999999999999999999999984
Q ss_pred ---CCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEE
Q 040462 187 ---TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDII 263 (726)
Q Consensus 187 ---~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVI 263 (726)
+..+++|.+||||||||||||+.+.+.+.+|++.|.++||||+|+|++||+|++.||..+++++||++|+++|+|||
T Consensus 81 ~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVi 160 (621)
T 3vta_A 81 SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDII 160 (621)
T ss_dssp CTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 24568899999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeee
Q 040462 264 TVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYS 343 (726)
Q Consensus 264 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~ 343 (726)
|||||+..+..++.+++++++++|.++||+||+||||+|+...++++.+||+++|++++.+|.|...+.++++..+.+.+
T Consensus 161 n~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s 240 (621)
T 3vta_A 161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240 (621)
T ss_dssp EECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEEBC
T ss_pred EecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeeeee
Confidence 99999886667788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eccCCCCCceeeEEecCCCCCCC-CcCCCCCCCCCCCCCCCccceEEEEEe--cchhHHHHhcCceEEEEEecCCCCcee
Q 040462 344 INSFAMKGKKFPLVHGKEVSESC-PEFSSQACNPGCINSSLVKGKIVMCSK--FDGYTEVHKVGAAGSILFNDQYEKVSF 420 (726)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~gkiv~~~~--~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 420 (726)
+... ....+++++..+..... .......|.+..+++.+++|||++|++ ..+.......|+.++|+.++... ...
T Consensus 241 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~-~~~ 317 (621)
T 3vta_A 241 INTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRD-YAD 317 (621)
T ss_dssp CCCS--CCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCS-SCC
T ss_pred cccC--CCcccccccccccccccccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCC-ccc
Confidence 7643 35667888877665433 345567899999999999999999988 55667778889999998887543 345
Q ss_pred eeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCC
Q 040462 421 VVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLA 500 (726)
Q Consensus 421 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 500 (726)
.+.+|...++..++..++.|+..+..+.+++...+......++.++.||||||+...+++|||||+|||++|+++|+...
T Consensus 318 ~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~ 397 (621)
T 3vta_A 318 SYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVA 397 (621)
T ss_dssp CCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCSSS
T ss_pred ccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCCcceEeecCccc
Confidence 58899999999999999999999999999996556666678899999999999988899999999999999999998654
Q ss_pred CCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccC
Q 040462 501 PISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580 (726)
Q Consensus 501 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~ 580 (726)
.... ..+...|..+||||||||||||++|||||+||+|||++||++||+||+++.....+..+++||+|+|||.+|+
T Consensus 398 ~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~~~~A~ 474 (621)
T 3vta_A 398 PVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKAV 474 (621)
T ss_dssp CBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCCHHHHS
T ss_pred cccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhcCCCccCHHHhc
Confidence 3322 2344689999999999999999999999999999999999999999999988777889999999999999999
Q ss_pred CCcccccCChhhHHHhhhcCCCCcceeeeecCCCcccCCCCCCCCCCCCCCceEEEeecCCCCceEEEEEEEEeccCCCe
Q 040462 581 NPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLANS 660 (726)
Q Consensus 581 ~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtnvg~~~~ 660 (726)
+||||||++.+||+.|||++||+..+++.++++...|+.. ......|||||||++........+++|+|||||||+..+
T Consensus 475 ~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ 553 (621)
T 3vta_A 475 RPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAS 553 (621)
T ss_dssp CCSEECCCCGGGCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCE
T ss_pred CCCeEeecccchhhhhhcccCCCchhheeeeccccccCCC-CcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCe
Confidence 9999999999999999999999999999999998899775 455578999999999865544568999999999999999
Q ss_pred eEEEEEEeecceeEEEEec---------ceeeEEEEEEeccCCCCCCeEEEEEEEEcCCeEEEeeEEEEe
Q 040462 661 TYRAKFFQKFTIISVKVVP---------EKKPFVVTVTGKGLPESGTVVPATLVWSDGIHSVRSPIVVHT 721 (726)
Q Consensus 661 ty~~~v~~~p~g~~v~v~p---------~~~~~~vt~~~~~~~~~~~~~~G~~~~~~~~~~vr~p~~~~~ 721 (726)
||+++|++ |+|++|+|+| |+++|+|||+.. ..+.|+||+|+|+||+|.||+||+|+.
T Consensus 554 ty~~~v~~-p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~---~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 554 TYRAMISA-PQGLTISVNPNVLSFNGLGDRKSFTLTVRGS---IKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEEEEEC-CSSEEEEEESSEEEECSTTCEEEEEEEEEEC---CCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred EEEEEEEC-CCCcEEEEecCEEEEcCCCcEEEEEEEEEec---CCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 99999999 9999999999 899999999875 457899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-82 Score=761.42 Aligned_cols=520 Identities=22% Similarity=0.272 Sum_probs=413.4
Q ss_pred cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCc-------------ccCCceeeeee
Q 040462 117 DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKN-------------FTCNNKLIGAR 183 (726)
Q Consensus 117 ~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~-------------f~~n~klig~~ 183 (726)
++++++ .+|+++.+|+||+|||||||||++||+|.+. ..|++.|..+.+ ..||+|+++++
T Consensus 2 d~i~~~-~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~ 74 (926)
T 1xf1_A 2 DPSQVK-TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH 74 (926)
T ss_dssp CTTCCH-HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred CccccH-HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceee
Confidence 467888 8999999999999999999999999999853 467666654322 27999999999
Q ss_pred ecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCe
Q 040462 184 YYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVD 261 (726)
Q Consensus 184 ~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvd 261 (726)
+|.+.....|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|+..+ +..+++++||++|+++|+|
T Consensus 75 ~~~~~~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvd 150 (926)
T 1xf1_A 75 DYSKDGKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAK 150 (926)
T ss_dssp ESCCCSCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccCCCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCc
Confidence 99654444599999999999999987654332 24569999999999999999876 5678999999999999999
Q ss_pred EEEeccCCCCC-CCccccHHHHHHHHHHhCCcEEEEecCCCCCCC-------------Ccc--ccCCCceEEEeeeccCc
Q 040462 262 IITVSLGGNIP-VDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL-------------GFV--YSVAPWLMSVAASTTDR 325 (726)
Q Consensus 262 VIn~S~G~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~~~--~~~~p~vitVgA~~~~~ 325 (726)
|||||||.... ...+.++++.++++|.++||+||+||||+|+.. .++ ++.+||+|+|||++.++
T Consensus 151 VIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~ 230 (926)
T 1xf1_A 151 VINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDK 230 (926)
T ss_dssp EEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSE
T ss_pred EEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccc
Confidence 99999998632 345677889999999999999999999999632 222 34589999999999999
Q ss_pred ceeeEEEe-CCCceEeeeeeccC--CCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEe-----cchh
Q 040462 326 LFVDKVLL-GNGATLSGYSINSF--AMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSK-----FDGY 397 (726)
Q Consensus 326 ~~~~~~~~-g~g~~~~g~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~ 397 (726)
.+...+.+ +++....+.++... ...+..+++++.+. .|.+..+ .+++||||+|+| .+|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-----------g~~~~~~--~~v~Gkivl~~rg~~~~~~k~ 297 (926)
T 1xf1_A 231 QLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-----------GTKEDDF--KDVKGKIALIERGDIDFKDKI 297 (926)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-----------SCSTTTT--TTCTTSEEEEECCSSCHHHHH
T ss_pred ccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-----------CCCccch--hhcCCeEEEEECCCCCHHHHH
Confidence 99998888 66655555554321 12367799998643 3766665 689999999998 5788
Q ss_pred HHHHhcCceEEEEEecCCCCc----eeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEE-eeeeeecCCCCCcccccCCCC
Q 040462 398 TEVHKVGAAGSILFNDQYEKV----SFVVSLPAVAVSMENFNSLISYKNSTKKPEAEI-LKTEAIKDFDAPVVAPFSSRG 472 (726)
Q Consensus 398 ~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSs~G 472 (726)
.+++++|+.|+|++++..... .....+|+..|+.+++.+|.+ ....++++ .....+.....+.++.|||||
T Consensus 298 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~FSSrG 373 (926)
T 1xf1_A 298 AKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRFSSWG 373 (926)
T ss_dssp HHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTTSCCC
T ss_pred HHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccccCCC
Confidence 899999999999999875432 223679999999999998874 34444444 222345666788999999999
Q ss_pred CCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHH----hhCCCCCHHH---
Q 040462 473 PNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVK----SFHPDWSPSA--- 545 (726)
Q Consensus 473 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~~sp~~--- 545 (726)
|+. ++++||||+|||++|+++++.+ .|..+||||||||||||++|||+ +.||+|+|+|
T Consensus 374 p~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~ 438 (926)
T 1xf1_A 374 LTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLD 438 (926)
T ss_dssp BCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHH
T ss_pred CCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 996 8999999999999999999754 79999999999999999999995 5699999997
Q ss_pred -HHHHHHhccccCCCCC--CCCCCCcCCCCccCccccCCCcccccCChhhHHHhhhcCCCCcceeeeecCCCcccCCCCC
Q 040462 546 -IRSAIMTTAWPMNSSK--VNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYNESIVRSISGDNSTCPKGSN 622 (726)
Q Consensus 546 -Ik~~L~~TA~~i~~~~--~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~~~ 622 (726)
||++||+||+++.... ...++++||+|+||+.+|++|.+ |||..+++..
T Consensus 439 ~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~----------------- 490 (926)
T 1xf1_A 439 LAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS----------------- 490 (926)
T ss_dssp HHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS-----------------
T ss_pred HHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc-----------------
Confidence 9999999999875531 23467899999999999999854 7887765332
Q ss_pred CCCCCCCCCceEEEeecCCCCceEEEEEEEEeccCC--CeeEEEEEEee-cceeEEEEec----------------ceee
Q 040462 623 KLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTNVGLA--NSTYRAKFFQK-FTIISVKVVP----------------EKKP 683 (726)
Q Consensus 623 ~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtnvg~~--~~ty~~~v~~~-p~g~~v~v~p----------------~~~~ 683 (726)
+|.+..+. .+.+++|||||+|+. ..+|++++... |+|..++|.| |+++
T Consensus 491 ----------~i~l~~~~---~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~ 557 (926)
T 1xf1_A 491 ----------KVHLNNVS---DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQ 557 (926)
T ss_dssp ----------CEEEEEEC---SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEE
T ss_pred ----------eeeccccC---ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEE
Confidence 23333333 278899999999985 46788887642 5566666655 8899
Q ss_pred EEEEEEecc--------CCCCCCeEEEEEEEE--cCCeE-EEeeEEEEe
Q 040462 684 FVVTVTGKG--------LPESGTVVPATLVWS--DGIHS-VRSPIVVHT 721 (726)
Q Consensus 684 ~~vt~~~~~--------~~~~~~~~~G~~~~~--~~~~~-vr~p~~~~~ 721 (726)
|+|||+... . +.+.|+||+|+|+ |++|. ||+||+++.
T Consensus 558 ~~vt~~~~~~~~~~~~~~-~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 558 VTVPIDASRFSKDLLAQM-KNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEEEEECHHHHHHHHHHS-TTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EEEEEEcCccchhhcccc-cCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 999998751 1 3457899999999 67775 999999985
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-61 Score=548.61 Aligned_cols=363 Identities=29% Similarity=0.413 Sum_probs=292.1
Q ss_pred CCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHH-----------HcCCC
Q 040462 30 DDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKL-----------ASMEE 98 (726)
Q Consensus 30 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L-----------~~~p~ 98 (726)
..+..|||.|++... ......+++.+ +.+++++|+ .|+||+++++++++++| +++|+
T Consensus 33 ~~~~~~iV~~~~~~~-----~~~~~~~~~~~------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 100 (539)
T 3afg_A 33 DQEVSTIIMFDNQAD-----KEKAVEILDFL------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSG 100 (539)
T ss_dssp TCEEEEEEEESSHHH-----HHHHHHHHHHH------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTT
T ss_pred cCceEEEEEECCCCC-----HHHHHHHHHhc------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCC
Confidence 345679999987532 11222233333 257899995 79999999999999999 88999
Q ss_pred eEEEEeCceeccccC-----CCccccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcc
Q 040462 99 VVSVFPSRTLQFHTT-----RSWDFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNF 173 (726)
Q Consensus 99 V~~v~~~~~~~~~~~-----~s~~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f 173 (726)
|++|+++..+++... ..+..++++ .+|..+.+|+||+|||||||||++||+|.++
T Consensus 101 V~~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~------------------- 160 (539)
T 3afg_A 101 VQFIQEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDASHPDLQGK------------------- 160 (539)
T ss_dssp EEEEEECCEEECC-----------CCBCS-CCBCCSCCCTTCEEEEEESBCCTTSGGGTTT-------------------
T ss_pred eeEEEecccccccCccccCCccccccCcH-hHHhcCCCCCCcEEEEEecCCCCCChHHhCC-------------------
Confidence 999999999887532 223445666 8999999999999999999999999999753
Q ss_pred cCCceeeeeeecC-CCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHH
Q 040462 174 TCNNKLIGARYYT-TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAA 251 (726)
Q Consensus 174 ~~n~klig~~~~~-~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~a 251 (726)
+++.++|. +...+.|..||||||||||+|+... ..|.+.||||+|+|+.+|+++..| ++.+++++|
T Consensus 161 -----i~~~~d~~~~~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~a 228 (539)
T 3afg_A 161 -----VIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIING 228 (539)
T ss_dssp -----EEEEEETTTCCSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHH
T ss_pred -----EeeeEECCCCCCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHH
Confidence 33444442 3456789999999999999997421 134458999999999999999877 788999999
Q ss_pred HHHHHhC----CCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCc
Q 040462 252 FDDAIAD----GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDR 325 (726)
Q Consensus 252 i~~A~~~----gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~ 325 (726)
|+||+++ |++|||||||.. ......+.+..++++|.++|++||+||||+|+... ..++..+++|+|||++.+
T Consensus 229 i~~a~~~~~~~g~~Vin~SlG~~-~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~- 306 (539)
T 3afg_A 229 VDWAVQNKDKYGIKVINLSLGSS-QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY- 306 (539)
T ss_dssp HHHHHHTHHHHTEEEEEECCCCC-SCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-
T ss_pred HHHHHhhhhhcCCcEEEeCCCCC-CCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-
Confidence 9999986 999999999987 33445688899999999999999999999998654 356788999999997533
Q ss_pred ceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCc
Q 040462 326 LFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGA 405 (726)
Q Consensus 326 ~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga 405 (726)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCce
Q 040462 406 AGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDI 485 (726)
Q Consensus 406 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI 485 (726)
+.++.||||||+. ++++||||
T Consensus 307 ---------------------------------------------------------~~~a~fSs~Gp~~--~~~~kpdi 327 (539)
T 3afg_A 307 ---------------------------------------------------------DVITDFSSRGPTA--DNRLKPEV 327 (539)
T ss_dssp ---------------------------------------------------------SCBCSSSCCCCCT--TCBCCCSE
T ss_pred ---------------------------------------------------------cccccccCCCCCC--CCCCcccE
Confidence 4578999999997 89999999
Q ss_pred EeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCC
Q 040462 486 SAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDA 565 (726)
Q Consensus 486 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~ 565 (726)
+|||++|+++++..... .+.....|..++|||||||||||++|||+|+||+|+|++||++|++||+++... ...
T Consensus 328 ~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~--~~~ 401 (539)
T 3afg_A 328 VAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPD--EIA 401 (539)
T ss_dssp EEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGG--GCS
T ss_pred ecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC--CCC
Confidence 99999999998754211 111123699999999999999999999999999999999999999999987632 125
Q ss_pred CCcCCCCccCccccCCCc
Q 040462 566 EVAFGSGHVNPVKAVNPG 583 (726)
Q Consensus 566 ~~~~G~G~vn~~~A~~~g 583 (726)
++.||+|+||+.+|++..
T Consensus 402 ~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 402 DIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp BTTTBTCBCCHHHHHTGG
T ss_pred ccCccCCccCHHHHhhhc
Confidence 678999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=506.50 Aligned_cols=339 Identities=24% Similarity=0.320 Sum_probs=275.6
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceeccc
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFH 111 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~ 111 (726)
+.+|||.|++... .+.+++.. +.++++.|. .+++|+++++++++++|+++|+|++|+++..++++
T Consensus 2 ~~~~iV~~~~~~~--------~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 66 (395)
T 2z2z_A 2 TIRVIVSVDKAKF--------NPHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66 (395)
T ss_dssp EEEEEEEECTTTC--------CHHHHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred cEEEEEEECCCcc--------HHHHHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence 4689999998643 11233332 468999996 59999999999999999999999999999988764
Q ss_pred cC--------------CCccc--cccchhhccCCCCCCC--cEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcc
Q 040462 112 TT--------------RSWDF--MGLNQSITRKHSVESN--IIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNF 173 (726)
Q Consensus 112 ~~--------------~s~~~--~g~~~~~w~~~~~G~g--V~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f 173 (726)
.. .+|.+ ++.+ .+|+.+ +|+| |+|||||||||++||+|.++ ...+.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~w~~~~i~~~-~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------~~~~~~~ 132 (395)
T 2z2z_A 67 GKPSWLGGGSTQPAQTIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------IAWCVST 132 (395)
T ss_dssp CEECC------CCSCCCCHHHHHTTCG-GGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG------------EEEEEEC
T ss_pred CCCCcccccccCccccCCcchhhcCHH-HHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc------------cccCccc
Confidence 32 23433 4455 799987 9999 99999999999999999864 1122222
Q ss_pred cCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHH
Q 040462 174 TCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAF 252 (726)
Q Consensus 174 ~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 252 (726)
..+. + + ....++.|..||||||||||+|.. + ..| +.||||+|+|+.+|+++..| ++.+++++||
T Consensus 133 ~~~~-~-~----~~~~~~~d~~gHGT~vAgiia~~~-n---~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai 197 (395)
T 2z2z_A 133 LRGK-V-S----TKLRDCADQNGHGTHVIGTIAALN-N---DIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGI 197 (395)
T ss_dssp GGGC-C-B----CCHHHHBCSSSHHHHHHHHHHCCC-S---SSS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred cCCc-c-c----CCCCCCCCCCCCHHHHHHHHHeec-C---CCc-----eEEECCCCEEEEEEEecCCCCccHHHHHHHH
Confidence 1110 0 0 001125688999999999999973 1 112 38999999999999998877 7889999999
Q ss_pred HHHHhC--------------------CCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCC
Q 040462 253 DDAIAD--------------------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVA 312 (726)
Q Consensus 253 ~~A~~~--------------------gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~ 312 (726)
+||+++ +++|||||||.... ...+..++.+|.++|++||+||||+|.....+++..
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~ 273 (395)
T 2z2z_A 198 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD----DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY 273 (395)
T ss_dssp HHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC----CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTS
T ss_pred HHHHhCccccccccccccccccccCCCCeEEEecCCCCCC----CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCC
Confidence 999998 99999999998732 356677777899999999999999998877888999
Q ss_pred CceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEE
Q 040462 313 PWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCS 392 (726)
Q Consensus 313 p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~ 392 (726)
|++|+|||++.+
T Consensus 274 ~~vi~Vga~~~~-------------------------------------------------------------------- 285 (395)
T 2z2z_A 274 PEVIAVGAIDSN-------------------------------------------------------------------- 285 (395)
T ss_dssp TTEEEEEEECTT--------------------------------------------------------------------
T ss_pred CCEEEEEEecCC--------------------------------------------------------------------
Confidence 999999997643
Q ss_pred ecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCC
Q 040462 393 KFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRG 472 (726)
Q Consensus 393 ~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~G 472 (726)
+.++.||++|
T Consensus 286 ----------------------------------------------------------------------~~~a~fS~~G 295 (395)
T 2z2z_A 286 ----------------------------------------------------------------------DNIASFSNRQ 295 (395)
T ss_dssp ----------------------------------------------------------------------SCBCTTSCSS
T ss_pred ----------------------------------------------------------------------CCCCcccCCC
Confidence 4678999999
Q ss_pred CCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCC-------------
Q 040462 473 PNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHP------------- 539 (726)
Q Consensus 473 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------------- 539 (726)
| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++|
T Consensus 296 ~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~ 352 (395)
T 2z2z_A 296 P----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFD 352 (395)
T ss_dssp C----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTT
T ss_pred C----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHHHHHHHHHHHHHhCcccccccccccccc
Confidence 7 6799999999998764 799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 540 DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 540 ~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
.|++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 353 ~ls~~~v~~~L~~tA~~~~~~---g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 353 DISKNTVRGILHITADDLGPT---GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp CCSSSSHHHHHHHHSBCCSSS---SSBTTTBTCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHhhccccCCC---CCCCCccCceeCHHHHHHH
Confidence 999999999999999988642 3568899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=506.73 Aligned_cols=352 Identities=20% Similarity=0.285 Sum_probs=278.2
Q ss_pred CCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHc-CCCeEEEEeCceec
Q 040462 31 DRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLAS-MEEVVSVFPSRTLQ 109 (726)
Q Consensus 31 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~-~p~V~~v~~~~~~~ 109 (726)
.++.|||++++.. ....+++.. +.++++.| ..+++|+++++++++++|++ +|+|++|+++..++
T Consensus 43 ~~~~yiv~~~~~~--------~~~~~~~~~------g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~ 107 (471)
T 3t41_A 43 EELYYSVEYKNTA--------TFNKLVKKK------SLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTC 107 (471)
T ss_dssp CCEEEEEEESCHH--------HHHHHHHHH------TCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSC
T ss_pred CceEEEEEcCCHH--------HHHHHHHhC------CCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceec
Confidence 3568899766532 122222322 35788888 55999999999999999999 99999999998877
Q ss_pred cccC-------------CCccccccch--hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCccc
Q 040462 110 FHTT-------------RSWDFMGLNQ--SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFT 174 (726)
Q Consensus 110 ~~~~-------------~s~~~~g~~~--~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~ 174 (726)
+... .+|.+..+.. .+|+.+.+|+||+|||||||||++||+|.++- |.+. .+|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~----~~~~ 176 (471)
T 3t41_A 108 ITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS----KNLV 176 (471)
T ss_dssp BCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC----EECC
T ss_pred cccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC----cccc
Confidence 6533 2466655543 58999999999999999999999999998751 1110 1111
Q ss_pred CCceeeeeeec--CCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHH
Q 040462 175 CNNKLIGARYY--TTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252 (726)
Q Consensus 175 ~n~klig~~~~--~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai 252 (726)
.++.+.+.... .+...+.|..||||||||||+|+. ...||||+|+|+.+|+++..++..+++++||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai 244 (471)
T 3t41_A 177 PLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKKTELLWVSKAI 244 (471)
T ss_dssp CTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSCCCHHHHHHHH
T ss_pred cCCCccCCCcccCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCCCcHHHHHHHH
Confidence 11111110000 012357789999999999999862 1489999999999999988668999999999
Q ss_pred HHHHhCCCeEEEeccCCCCCC------------CccccHHHHHHHHHHhCCcEEEEecCCCCCCCC--------------
Q 040462 253 DDAIADGVDIITVSLGGNIPV------------DFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLG-------------- 306 (726)
Q Consensus 253 ~~A~~~gvdVIn~S~G~~~~~------------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------- 306 (726)
+||+++|++|||||||..... ....+.+..++..+.++|++||+||||+|.+..
T Consensus 245 ~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~ 324 (471)
T 3t41_A 245 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGN 324 (471)
T ss_dssp HHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSS
T ss_pred HHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccC
Confidence 999999999999999973111 123467888888999999999999999998654
Q ss_pred ----ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCC
Q 040462 307 ----FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSS 382 (726)
Q Consensus 307 ----~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~ 382 (726)
..++.+|++|+|||++.+
T Consensus 325 ~~~~~~Pa~~~~vitVgA~~~~---------------------------------------------------------- 346 (471)
T 3t41_A 325 GEVKDVPASMDNVVTVGSTDQK---------------------------------------------------------- 346 (471)
T ss_dssp SEEEEETTTSTTEEEEEEECTT----------------------------------------------------------
T ss_pred CceeeccccCCCeEEEEeeCCC----------------------------------------------------------
Confidence 266788999999998644
Q ss_pred CccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCC
Q 040462 383 LVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDA 462 (726)
Q Consensus 383 ~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 462 (726)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCCCCCCCcCCceEeCCcc----------------------EEeecCCCCCCCCCCCCccccceeecccc
Q 040462 463 PVVAPFSSRGPNAILPDILKPDISAPGVD----------------------ILAAVSPLAPISTDPEDKRRVKYSIESGT 520 (726)
Q Consensus 463 ~~~a~fSs~GP~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 520 (726)
+.++.||++||+. |||+|||++ |+++++.+ .|..++||
T Consensus 347 ~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGT 406 (471)
T 3t41_A 347 SNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG-------------RYIYQAGT 406 (471)
T ss_dssp SSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-------------SEEEECSH
T ss_pred CCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC-------------CEEeecch
Confidence 4578999999973 599999987 88888654 79999999
Q ss_pred cchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 521 SMACPHAAAVAAYVKSFHP-DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 521 SmAaP~VAG~aALl~~~~P-~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
|||||||||++|||+|++| .|+|++||++|++||++... .++..||||+||+.+|++.
T Consensus 407 S~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~----~~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 407 ALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN----KPFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC----CCHHHHTTCBBCHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC----CCcCccccChhCHHHHHHH
Confidence 9999999999999999999 89999999999999998755 3678899999999999984
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=521.36 Aligned_cols=334 Identities=17% Similarity=0.224 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceeccc
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQFH 111 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~ 111 (726)
+++|||+|++... ......+.+++.+.+.. .....++++.|++.|+||+++++++++++|+++|+|++|+|+..+...
T Consensus 75 pg~YIV~lk~~~~-~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~ 152 (692)
T 2p4e_P 75 PGTYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ 152 (692)
T ss_dssp EEEEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC
T ss_pred CCcEEEEECCCCC-HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC
Confidence 3489999998765 23333444555443322 223468999999999999999999999999999999999999988653
Q ss_pred cCCCccccccch-----hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecC
Q 040462 112 TTRSWDFMGLNQ-----SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYT 186 (726)
Q Consensus 112 ~~~s~~~~g~~~-----~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~ 186 (726)
..+|.+..+.. ..|..+.+|+||+|+|||||||++||+|.++.. |. +.++..+. -+ ..|
T Consensus 153 -~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-----~~~~~~d~--dg-~~~- 216 (692)
T 2p4e_P 153 -SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-----DFENVPEE--DG-TRF- 216 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-----ccccccCC--CC-Ccc-
Confidence 34677655432 368778899999999999999999999987521 11 11110000 00 001
Q ss_pred CCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC------C
Q 040462 187 TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD------G 259 (726)
Q Consensus 187 ~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~------g 259 (726)
...+.|.+||||||||||+|+. .||||+|+|+++|++++.| ++.+++++||+|++++ |
T Consensus 217 -~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g 281 (692)
T 2p4e_P 217 -HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVG 281 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCC
Confidence 1356789999999999999873 7999999999999998877 7889999999999986 8
Q ss_pred CeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEEeeeccCcceeeEEEeCCCce
Q 040462 260 VDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF-VYSVAPWLMSVAASTTDRLFVDKVLLGNGAT 338 (726)
Q Consensus 260 vdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~ 338 (726)
++|||||||+. . ...+..++..|.++||+||+||||+|.+... .++..|++|+|||++.++..
T Consensus 282 ~~VINmSlGg~-~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~----------- 345 (692)
T 2p4e_P 282 PLVVLLPLAGG-Y----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEecCCCC-C----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-----------
Confidence 99999999975 2 3455666678899999999999999987644 47789999999998655210
Q ss_pred EeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCc
Q 040462 339 LSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKV 418 (726)
Q Consensus 339 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 418 (726)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCC
Q 040462 419 SFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSP 498 (726)
Q Consensus 419 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~ 498 (726)
...-+.||++|| ||||+|||++|+++++.
T Consensus 346 -------------------------------------------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~ 374 (692)
T 2p4e_P 346 -------------------------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSD 374 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------cccccccCCCCC--------ceeEEecCCcEEeeccC
Confidence 001123899998 45999999999999875
Q ss_pred CCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 040462 499 LAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP 556 (726)
Q Consensus 499 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 556 (726)
. ...|..++|||||||||||++|||++++|+|+|++||++|++||.+
T Consensus 375 ~-----------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~ 421 (692)
T 2p4e_P 375 C-----------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 421 (692)
T ss_dssp ----------------------------------------------------------
T ss_pred C-----------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccc
Confidence 3 1379999999999999999999999999999999999999999974
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=498.29 Aligned_cols=370 Identities=24% Similarity=0.272 Sum_probs=278.1
Q ss_pred CCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCH---H-HHHHHH--cCCCeEEEE
Q 040462 30 DDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTD---L-ERQKLA--SMEEVVSVF 103 (726)
Q Consensus 30 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~---~-~~~~L~--~~p~V~~v~ 103 (726)
..+++|||.+++... .+.+++.+ +.++.+.+ ..+++++++++. + .+++|+ ++|+|++||
T Consensus 29 ~~~~~~IV~~k~~~~--------~~~~~~~~------g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~ve 93 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVE 93 (671)
T ss_dssp BCTTEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEE
T ss_pred cCCccEEEEECCCcC--------HHHHHHhc------CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEe
Confidence 358999999997432 22333333 24677777 578999999865 3 356676 489999999
Q ss_pred eCceecccc------------------------------CCCccc--cccchhh-ccCCCCCCCcEEEEEcccCCCCCCC
Q 040462 104 PSRTLQFHT------------------------------TRSWDF--MGLNQSI-TRKHSVESNIIIGVIDSGIWPESES 150 (726)
Q Consensus 104 ~~~~~~~~~------------------------------~~s~~~--~g~~~~~-w~~~~~G~gV~VgVIDtGid~~Hp~ 150 (726)
|+..+++.. ..+|.+ ++++ .+ |+. .+|+||+|||||||||++||+
T Consensus 94 pd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~-~a~w~~-~tG~gV~VAVIDTGVd~~Hpd 171 (671)
T 1r6v_A 94 PSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEE-ASGTNIIVAVVDTGVDGTHPD 171 (671)
T ss_dssp CCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHH-CSCTTCEEEEEESCCBTTSGG
T ss_pred cCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCc-hhhhhc-cCCCCCEEEEEeCCCCCCCcc
Confidence 997654321 012322 3444 56 988 899999999999999999999
Q ss_pred CCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCc
Q 040462 151 FSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSA 230 (726)
Q Consensus 151 f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A 230 (726)
|.++ .+ .++++..+..+ ....+..|..||||||||||||... -.| +.||||+|
T Consensus 172 L~~~-------~~-----~g~~~~~~~~~------p~~~d~~d~~gHGThVAGiIAa~~n----g~g-----v~GVAP~A 224 (671)
T 1r6v_A 172 LEGQ-------VI-----AGYRPAFDEEL------PAGTDSSYGGSAGTHVAGTIAAKKD----GKG-----IVGVAPGA 224 (671)
T ss_dssp GTTT-------BC-----CEEEGGGTEEE------CTTCBCCTTCSHHHHHHHHHHCCCS----SSS-----CCCSCTTS
T ss_pred cccc-------EE-----ecccccCCCcC------CCCCCCccCCCcchhhhhhhhccCC----CCc-----eEEECCCC
Confidence 9875 11 12222111111 0122345678999999999999731 112 38999999
Q ss_pred eEEEEEeeCC------CC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCC
Q 040462 231 RIAAYKVCNP------SG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGS 303 (726)
Q Consensus 231 ~l~~~kv~~~------~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~ 303 (726)
+|+.+|+++. .+ ...+.+++||+||+++|++|||||||... ....+..++..|.++|+++|+||||+|.
T Consensus 225 ~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~ 300 (671)
T 1r6v_A 225 KIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTS 300 (671)
T ss_dssp EEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSS
T ss_pred EEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 9999999986 23 45677999999999999999999999862 2456778888999999999999999998
Q ss_pred CC-CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCC
Q 040462 304 NL-GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSS 382 (726)
Q Consensus 304 ~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~ 382 (726)
+. ..+++..|++|+|||++.+..
T Consensus 301 ~~~~~yPA~~~~VItVgA~d~~g~-------------------------------------------------------- 324 (671)
T 1r6v_A 301 DSHHQYPAGYPGVIQVAALDYYGG-------------------------------------------------------- 324 (671)
T ss_dssp SCCCCBTTTSTTCEEEEEEEEETT--------------------------------------------------------
T ss_pred CCCccCcccCCCeEEEEEEcCCCC--------------------------------------------------------
Confidence 75 567788999999999864420
Q ss_pred CccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCC
Q 040462 383 LVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDA 462 (726)
Q Consensus 383 ~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 462 (726)
.
T Consensus 325 -------------------------------------------------------------------------------~ 325 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------T 325 (671)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCC-----CCCCccccceeecccccchhHHHHHHHHHHHhh
Q 040462 463 PVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPIST-----DPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF 537 (726)
Q Consensus 463 ~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 537 (726)
..++.||++||.. ||+|||++|+++++....... .........|..++|||||||||||++|||+|+
T Consensus 326 ~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~ 397 (671)
T 1r6v_A 326 FRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397 (671)
T ss_dssp EEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHH
Confidence 2368899999976 999999999999875421110 000112347999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCCcccccCChhhH
Q 040462 538 HPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDY 593 (726)
Q Consensus 538 ~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy 593 (726)
+|+|+|++||++|++||+++... ..+..||+|+||+.+|++..|..+....||
T Consensus 398 ~P~lt~~~Vr~~L~~TA~~~~~~---g~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 398 FPNAKPWQIRKLLENTAFDFNGN---GWDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp CTTCCHHHHHHHHHHHCBCSSSS---SCBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred CCCCCHHHHHHHHHHhCcCCCCC---CCCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 99999999999999999987653 356789999999999999888776655444
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-55 Score=489.58 Aligned_cols=380 Identities=24% Similarity=0.322 Sum_probs=274.7
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++.+ .+|+.+ |+||+|+|||||||++||+|.++ .|.+ .++..+. +...+
T Consensus 4 ~~W~l~~i~~~-~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~~~-----~~~~~~~---------~~~~~ 59 (441)
T 1y9z_A 4 TPWGQTFVGAT-VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NVTG-----TNNSGTG---------NWYQP 59 (441)
T ss_dssp CCHHHHHTTCS-SSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EEEE-----CCCTTSC---------CTTCC
T ss_pred CCCChhhcChh-hhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cccC-----cccCCCC---------CCCCC
Confidence 35654 4455 789864 77999999999999999999865 2221 2221110 12356
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCc--eEEEEEeeCCCC-CCHHHHHHHHHHHHhC-CCeEEEecc
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSA--RIAAYKVCNPSG-CASTDILAAFDDAIAD-GVDIITVSL 267 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-gvdVIn~S~ 267 (726)
.|..||||||||||++... ..| +.||||+| +|+.+|+++..| ++.+++++||+||+++ |++||||||
T Consensus 60 ~d~~gHGT~vAgiia~~~~--------~~g-~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~ 130 (441)
T 1y9z_A 60 GNNNAHGTHVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL 130 (441)
T ss_dssp CSSCCHHHHHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCCcHHHHHHHHhcccC--------CCC-ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCC
Confidence 7889999999999999742 122 38999995 999999999877 8888999999999999 999999999
Q ss_pred CCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCC------------
Q 040462 268 GGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGN------------ 335 (726)
Q Consensus 268 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~------------ 335 (726)
|.... ...+..++.+|.++|++||+||||+|.....+++..|++|+|||++.++....+...+.
T Consensus 131 G~~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~ 206 (441)
T 1y9z_A 131 GGSGS----TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAIL 206 (441)
T ss_dssp CBSCC----BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEE
T ss_pred CCCCC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCee
Confidence 98722 24566777789999999999999999988888899999999999987754332222221
Q ss_pred -------Cc----eEeeeeeccCCC-CC-ceee--EEecCCCCCCCCcCCCCCCCC--CCCCCCCccceEEEEEec----
Q 040462 336 -------GA----TLSGYSINSFAM-KG-KKFP--LVHGKEVSESCPEFSSQACNP--GCINSSLVKGKIVMCSKF---- 394 (726)
Q Consensus 336 -------g~----~~~g~~~~~~~~-~~-~~~~--l~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~gkiv~~~~~---- 394 (726)
+. .+.|.+++.... +. ..++ +.+..+............|.. ..++..+++|||++|+|.
T Consensus 207 s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~ 286 (441)
T 1y9z_A 207 STVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQG 286 (441)
T ss_dssp EECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSS
T ss_pred ccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCc
Confidence 11 122222221100 00 0000 111111000000112235764 356788999999999882
Q ss_pred ------chhHHHHhcCceEEEEEecCCCCc---------eeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecC
Q 040462 395 ------DGYTEVHKVGAAGSILFNDQYEKV---------SFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKD 459 (726)
Q Consensus 395 ------~~~~~~~~~Ga~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 459 (726)
+|..+++++|+.|+|++++..... ...+.+|.+.++.++++.|+.|+.++ .
T Consensus 287 ~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~---------- 352 (441)
T 1y9z_A 287 SSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T---------- 352 (441)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E----------
T ss_pred ccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c----------
Confidence 468899999999999998764321 12267999999999999999876421 0
Q ss_pred CCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCC
Q 040462 460 FDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHP 539 (726)
Q Consensus 460 ~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P 539 (726)
.+ +... ...|..++|||||||||||++|||+|+||
T Consensus 353 ------------------------t~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl~~~~p 387 (441)
T 1y9z_A 353 ------------------------TV--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLVWSYHP 387 (441)
T ss_dssp ------------------------EE--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred ------------------------cc--------cccc-------------CCCceeecccccCCcccchHHHHHHHHCC
Confidence 11 1111 13799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCCcccccCChhhHHHhhhcCCCC
Q 040462 540 DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCSIGYN 603 (726)
Q Consensus 540 ~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~~~~~ 603 (726)
+|+|++||++||+||+++...+ .+..||+|+||+.+|+ ||+.|||..++.
T Consensus 388 ~~sp~~ik~~L~~TA~~~~~~g---~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 388 ECSASQVRAALNATADDLSVAG---RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp TSCHHHHHHHHHHHSBCCSSSS---CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred CCCHHHHHHHHHhhchhhccCC---CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 9999999999999999886532 4678999999999995 699999998763
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-52 Score=434.07 Aligned_cols=266 Identities=29% Similarity=0.366 Sum_probs=216.4
Q ss_pred CCccccccch-hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeec-CCCCCC
Q 040462 114 RSWDFMGLNQ-SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY-TTDGTA 191 (726)
Q Consensus 114 ~s~~~~g~~~-~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~-~~~~~~ 191 (726)
.+|.+-.+.. .+|+.+..|+||+|+|||||||++||+|.++ ++..++| .+...+
T Consensus 11 ~~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~------------------------~~~~~~~~~~~~~~ 66 (280)
T 1dbi_A 11 YQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDNDYDP 66 (280)
T ss_dssp HCCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTTBSCC
T ss_pred CCCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC------------------------cccceeccCCCCCC
Confidence 4565543332 8999988888999999999999999999864 1222233 223456
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..||||||||||+|...++. | +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||..
T Consensus 67 ~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 138 (280)
T 1dbi_A 67 MDLNNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD 138 (280)
T ss_dssp CCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCCCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 7899999999999999753221 2 38999999999999998876 7889999999999999999999999986
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
. ....++.++.++.++|++||+||||+|.....+++..+++|+|||++.+
T Consensus 139 ~----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 188 (280)
T 1dbi_A 139 C----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY-------------------------- 188 (280)
T ss_dssp C----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT--------------------------
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC--------------------------
Confidence 2 2356777888999999999999999998877788899999999997644
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 189 --------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~~----------- 217 (280)
T 1dbi_A 189 --------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITGN----------- 217 (280)
T ss_dssp --------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETTT-----------
T ss_pred --------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecCCC-----------
Confidence 4568899999865 9999999999998754
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|+||+.+|++
T Consensus 218 --~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 218 --RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp --EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-----BTTTBSSEECCHHHHHT
T ss_pred --CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-----CCCcccCCEECHHHHhc
Confidence 799999999999999999999987 899999999999999998864 34679999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-52 Score=433.62 Aligned_cols=264 Identities=29% Similarity=0.432 Sum_probs=221.7
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++++ .+|+.+++|+||+|+|||||||++||+|+. ..+.+|. .+...+
T Consensus 4 ~~w~l~~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~--------------~~g~~~~-----------~~~~~~ 57 (274)
T 1r0r_E 4 VPYGIPLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLNV--------------VGGASFV-----------AGEAYN 57 (274)
T ss_dssp CCTHHHHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------EEEEECS-----------TTCCTT
T ss_pred CCCchhhcCCH-HHHhcCCCCCCCEEEEEcCCCCCCCHhHcC--------------CCCcccc-----------CCCCCC
Confidence 35654 4445 899999999999999999999999999941 1112221 122346
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..||||||||||+|... ..| +.||||+|+|+.+|+++..+ +..+++++||+||++++++|||||||..
T Consensus 58 ~d~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 128 (274)
T 1r0r_E 58 TDGNGHGTHVAGTVAALDN----TTG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGA 128 (274)
T ss_dssp CCSSSHHHHHHHHHHCCSS----SSB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred CCCCCCHHHHHHHHHccCC----CCc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 7889999999999999631 112 38999999999999998877 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeecc
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~ 346 (726)
.. ...+..++.++.++|++||+||||+|... ..++...|++|+||+++.+
T Consensus 129 ~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 182 (274)
T 1r0r_E 129 SG----STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---------------------- 182 (274)
T ss_dssp SC----CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred CC----cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC----------------------
Confidence 22 35677788899999999999999999763 3457788999999997543
Q ss_pred CCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeE
Q 040462 347 FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426 (726)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 426 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
+.++.||++||.+ ||+|||++|+++++.+
T Consensus 183 ------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~------- 211 (274)
T 1r0r_E 183 ------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYPTN------- 211 (274)
T ss_dssp ------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT-------
T ss_pred ------------------------------------CCcCccCCCCCCc--------eEEeCCCCeEeecCCC-------
Confidence 4568899999854 9999999999998754
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..||+|+||+.+|++
T Consensus 212 ------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 212 ------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------CHHHHTTCBCCHHHHTC
T ss_pred ------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------CCCCcccCccCHHHHhC
Confidence 7999999999999999999999999999999999999999999874 36789999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=430.72 Aligned_cols=263 Identities=31% Similarity=0.456 Sum_probs=223.0
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++++ .+|+.+++|+||+|+|||||| .+||+|+. ..+.+|. .+...+
T Consensus 4 ~~W~l~~i~~~-~a~~~g~~G~gv~VaViDtGi-~~h~~l~~--------------~~~~~~~-----------~~~~~~ 56 (269)
T 1gci_A 4 VPWGISRVQAP-AAHNRGLTGSGVKVAVLDTGI-STHPDLNI--------------RGGASFV-----------PGEPST 56 (269)
T ss_dssp CCHHHHHTTHH-HHHHTTCSCTTCEEEEEESCC-CCCTTCCE--------------EEEEECS-----------TTCCSC
T ss_pred CCcChhhcCcH-HHHhcCCCCCCCEEEEECCCC-CCCHhhcc--------------cCCcccC-----------CCCCCC
Confidence 45655 4445 899999999999999999999 89999941 1112221 123346
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..||||||||||+|.. +..| +.||||+|+|+.+|+++..+ ++.+++++||+|+++++++|||||||..
T Consensus 57 ~d~~gHGT~vAgiia~~~----~~~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~ 127 (269)
T 1gci_A 57 QDGNGHGTHVAGTIAALN----NSIG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSP 127 (269)
T ss_dssp SCSSSHHHHHHHHHHCCC----SSSB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred CCCCCChHHHHHHHhcCc----CCCC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 789999999999999972 1112 38999999999999998876 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
.. ...++.++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 128 ~~----~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 177 (269)
T 1gci_A 128 SP----SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------------------- 177 (269)
T ss_dssp SC----CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------------
T ss_pred CC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC--------------------------
Confidence 22 356777788999999999999999999877888899999999997543
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 178 --------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~----------- 206 (269)
T 1gci_A 178 --------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPGS----------- 206 (269)
T ss_dssp --------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT-----------
T ss_pred --------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecCCC-----------
Confidence 4568899999965 9999999999998754
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..||+|+||+.+|++
T Consensus 207 --~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 207 --TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp --EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS------CHHHHTTCBCCHHHHTC
T ss_pred --CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC------CCCCcccCccCHHHHcC
Confidence 7999999999999999999999999999999999999999999874 36789999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=462.62 Aligned_cols=297 Identities=22% Similarity=0.236 Sum_probs=201.9
Q ss_pred ccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcc--cCCce-----eeeee------e
Q 040462 118 FMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNF--TCNNK-----LIGAR------Y 184 (726)
Q Consensus 118 ~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f--~~n~k-----lig~~------~ 184 (726)
+.|++ .+|+++..|++|+|||||||||++||+|.+....+....|...++..... ..+.. ..+.. .
T Consensus 17 ipG~~-~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (357)
T 4h6x_A 17 IPGLA-DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEA 95 (357)
T ss_dssp STTHH-HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred ccCHH-HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccccc
Confidence 44677 89999999999999999999999999999876665666676554432111 00000 00000 0
Q ss_pred c-CCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCC-----C-CCHHHHHHHHHHHHh
Q 040462 185 Y-TTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPS-----G-CASTDILAAFDDAIA 257 (726)
Q Consensus 185 ~-~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~-----g-~~~~~i~~ai~~A~~ 257 (726)
+ .+..++.|.+||||||||||+|+... .+.||||+|+|+.+|++... + ....++++||+||++
T Consensus 96 ~~~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~ 165 (357)
T 4h6x_A 96 VIPDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALE 165 (357)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHH
Confidence 0 11234457789999999999997421 23899999999999997542 1 455678999999999
Q ss_pred CCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCc
Q 040462 258 DGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGA 337 (726)
Q Consensus 258 ~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~ 337 (726)
+|++|||||||.........+.+..++.++.++|++||+||||+|.....+++..|++|+|||++.+
T Consensus 166 ~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 232 (357)
T 4h6x_A 166 LGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD------------- 232 (357)
T ss_dssp TTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-------------
T ss_pred cCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-------------
Confidence 9999999999987555556778888899999999999999999998888888999999999997644
Q ss_pred eEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCC
Q 040462 338 TLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEK 417 (726)
Q Consensus 338 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 417 (726)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecC
Q 040462 418 VSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVS 497 (726)
Q Consensus 418 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~ 497 (726)
+.++.||+||+.. .||||+|||++|+++++
T Consensus 233 ---------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~ 262 (357)
T 4h6x_A 233 ---------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEILGAQP 262 (357)
T ss_dssp ---------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEEECCT
T ss_pred ---------------------------------------------CcccccccCCCCC-----CccceeecCCCeEeccC
Confidence 4678999999753 58999999999999987
Q ss_pred CCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCc
Q 040462 498 PLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF----HPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGH 573 (726)
Q Consensus 498 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~ 573 (726)
.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||+++... ....+..||+|+
T Consensus 263 ~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-~~~~~~~~G~G~ 329 (357)
T 4h6x_A 263 CT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-VVEEPERCLRGF 329 (357)
T ss_dssp TC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------CTTCB
T ss_pred CC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-CCCCcccceeEE
Confidence 65 36778999999999999999999954 57899999999999999987543 233567899999
Q ss_pred cCccccCC
Q 040462 574 VNPVKAVN 581 (726)
Q Consensus 574 vn~~~A~~ 581 (726)
||+.+|++
T Consensus 330 vn~~~A~~ 337 (357)
T 4h6x_A 330 VNIPGAMK 337 (357)
T ss_dssp CCHHHHHH
T ss_pred ecHHHHHH
Confidence 99999987
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-52 Score=434.11 Aligned_cols=266 Identities=31% Similarity=0.441 Sum_probs=221.7
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+|.+ ++++ .+|..+++|+||+|||||||||++||+|+.. .+.+|..+ +....
T Consensus 4 ~~w~l~~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~~--------------~g~~~~~~----------~~~~~ 58 (281)
T 1to2_E 4 VPYGVSQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA--------------GGASMVPS----------ETNPF 58 (281)
T ss_dssp CCHHHHHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--------------EEEECCTT----------CCCTT
T ss_pred CCcchhhcChH-HHHhcCCCCCCCEEEEEcCCCCCCCHHHcCc--------------CCccccCC----------CCCCC
Confidence 34554 3444 8999999999999999999999999999521 11122111 11223
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..||||||||||+|... ..| +.||||+|+|+.+|+++..+ +..++++++|+|+++++++|||||||..
T Consensus 59 ~d~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 129 (281)
T 1to2_E 59 QDNNSHGTHVAGTVAALNN----SIG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP 129 (281)
T ss_dssp CCSSSHHHHHHHHHHCCSS----SSS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred CCCCCcHHHHHHHHhccCC----CCc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCC
Confidence 6889999999999999731 112 38999999999999998776 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeecc
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~ 346 (726)
.. ...+..++.++.++|++||+||||+|... ..++...|++|+|||++.+
T Consensus 130 ~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 183 (281)
T 1to2_E 130 SG----SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------------------- 183 (281)
T ss_dssp CC----CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred CC----CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC----------------------
Confidence 22 35677788899999999999999999763 3467788999999997543
Q ss_pred CCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeE
Q 040462 347 FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426 (726)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 426 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
+.++.||++||.. ||+|||++|+++++.+
T Consensus 184 ------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~~~------- 212 (281)
T 1to2_E 184 ------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPGN------- 212 (281)
T ss_dssp ------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETTT-------
T ss_pred ------------------------------------CCcCCcCCCCCCc--------eEEecCCCeEeecCCC-------
Confidence 4568899999965 9999999999998754
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .++.||+|+||+.+|+++
T Consensus 213 ------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 213 ------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------CHHHHTTCBCCHHHHTSS
T ss_pred ------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC------CCCCcccceecHHHHhhh
Confidence 7999999999999999999999999999999999999999999874 367899999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=429.18 Aligned_cols=264 Identities=29% Similarity=0.404 Sum_probs=222.8
Q ss_pred CCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeec-CCCCC
Q 040462 114 RSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY-TTDGT 190 (726)
Q Consensus 114 ~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~-~~~~~ 190 (726)
.+|.+ ++++ .+|+.. +|+||+|+|||||||++||+|.++ ++..++| .+...
T Consensus 11 ~~w~l~~i~~~-~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~~~~ 64 (279)
T 1thm_A 11 RQYGPQKIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDNDST 64 (279)
T ss_dssp HCCHHHHTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTTBSC
T ss_pred cccChhhCChH-HHHhcC-CCCCCEEEEEccCCCCCCcchhcC------------------------ccccccccCCCCC
Confidence 45655 3444 899975 799999999999999999999864 2222233 22345
Q ss_pred CCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCC
Q 040462 191 ARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGG 269 (726)
Q Consensus 191 ~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~ 269 (726)
+.|..||||||||||+|...++. | +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||.
T Consensus 65 ~~d~~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~ 136 (279)
T 1thm_A 65 PQNGNGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGG 136 (279)
T ss_dssp CCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred CCCCCCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 67899999999999999753221 2 38999999999999998876 788999999999999999999999998
Q ss_pred CCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCC
Q 040462 270 NIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAM 349 (726)
Q Consensus 270 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~ 349 (726)
.. ..+.+..++.++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 137 ~~----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------- 187 (279)
T 1thm_A 137 TV----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------- 187 (279)
T ss_dssp SS----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------
T ss_pred CC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------------------------
Confidence 72 2356777888999999999999999998877888899999999997644
Q ss_pred CCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEe
Q 040462 350 KGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAV 429 (726)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 429 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCc
Q 040462 430 SMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509 (726)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 509 (726)
+.++.||++||.. ||+|||++|+++++..
T Consensus 188 ---------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~~---------- 216 (279)
T 1thm_A 188 ---------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS---------- 216 (279)
T ss_dssp ---------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETTT----------
T ss_pred ---------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCCC----------
Confidence 4568899999865 9999999999998754
Q ss_pred cccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 510 RRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 510 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|+||+.+|++
T Consensus 217 ---~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-----~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 217 ---TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ---EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHHH
T ss_pred ---CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-----CccccCCeeCHHHHhc
Confidence 7999999999999999999999 579999999999999999998653 2579999999999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=438.45 Aligned_cols=273 Identities=26% Similarity=0.322 Sum_probs=219.6
Q ss_pred cCCCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCC
Q 040462 112 TTRSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG 189 (726)
Q Consensus 112 ~~~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~ 189 (726)
...+|.+ ++++ .+|+.+++|+||+|||||||||++||+|.++ ...+.+|..+. -....
T Consensus 19 ~~~~w~l~~i~~~-~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~------------~~~~~~~~~~~-------~~~~~ 78 (327)
T 2x8j_A 19 SEVPMGVEIVEAP-AVWRASAKGAGQIIGVIDTGCQVDHPDLAER------------IIGGVNLTTDY-------GGDET 78 (327)
T ss_dssp BSCCHHHHHTTHH-HHHHHHGGGTTCEEEEEESCCCTTCTTTGGG------------EEEEEECSSGG-------GGCTT
T ss_pred cccCcchhhcChH-HHHhcCCCCCCCEEEEEcCCCCCCChhHhhc------------ccCCccccCCC-------CCCCC
Confidence 3346655 4555 8999999999999999999999999999754 11122221110 00122
Q ss_pred CCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHh------CCCeE
Q 040462 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIA------DGVDI 262 (726)
Q Consensus 190 ~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~------~gvdV 262 (726)
...|..||||||||||+|... + .| +.||||+|+|+.+|+++..| ++.+++++||+||++ ++++|
T Consensus 79 ~~~d~~gHGT~VAgiia~~~~-~-------~g-~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~V 149 (327)
T 2x8j_A 79 NFSDNNGHGTHVAGTVAAAET-G-------SG-VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRI 149 (327)
T ss_dssp CCCCSSSHHHHHHHHHHCCCC-S-------SB-CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSE
T ss_pred CCCCCCCchHHHHHHHhccCC-C-------CC-cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceE
Confidence 357899999999999999731 1 12 38999999999999998877 788999999999999 89999
Q ss_pred EEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC-----CccccCCCceEEEeeeccCcceeeEEEeCCCc
Q 040462 263 ITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL-----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGA 337 (726)
Q Consensus 263 In~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~ 337 (726)
||||||... ....+..++..|.++|++||+||||+|... ..+++..|++|+|||++.+
T Consensus 150 in~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~------------- 212 (327)
T 2x8j_A 150 ITMSLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD------------- 212 (327)
T ss_dssp EEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT-------------
T ss_pred EEECCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC-------------
Confidence 999999872 235677778889999999999999999752 3567788999999997644
Q ss_pred eEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCC
Q 040462 338 TLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEK 417 (726)
Q Consensus 338 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 417 (726)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecC
Q 040462 418 VSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVS 497 (726)
Q Consensus 418 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~ 497 (726)
+.++.||++||. |||+|||++|+++++
T Consensus 213 ---------------------------------------------~~~~~fS~~G~~--------~di~APG~~i~s~~~ 239 (327)
T 2x8j_A 213 ---------------------------------------------LRLSDFTNTNEE--------IDIVAPGVGIKSTYL 239 (327)
T ss_dssp ---------------------------------------------CCBSCC---CCC--------CSEEEECSSEEEECS
T ss_pred ---------------------------------------------CCCCCccCCCCC--------ceEecCcCceEeecC
Confidence 456889999985 499999999999987
Q ss_pred CCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCC
Q 040462 498 PLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF-----HPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSG 572 (726)
Q Consensus 498 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G 572 (726)
.+ .|..++|||||||||||++|||+|+ +|.|++.+||++|++||+++.. .+..+|+|
T Consensus 240 ~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-----~~~~~G~G 301 (327)
T 2x8j_A 240 DS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-----TAQAEGNG 301 (327)
T ss_dssp TT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----CHHHHTTC
T ss_pred CC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----CCCceeee
Confidence 54 6999999999999999999999999 9999999999999999998753 56789999
Q ss_pred ccCccccCC
Q 040462 573 HVNPVKAVN 581 (726)
Q Consensus 573 ~vn~~~A~~ 581 (726)
+||+.+|++
T Consensus 302 ~vd~~~A~~ 310 (327)
T 2x8j_A 302 FLTLDLVER 310 (327)
T ss_dssp EECTTHHHH
T ss_pred EECHHHHHH
Confidence 999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=427.63 Aligned_cols=288 Identities=30% Similarity=0.349 Sum_probs=226.8
Q ss_pred cCCCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCC
Q 040462 112 TTRSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG 189 (726)
Q Consensus 112 ~~~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~ 189 (726)
...+|.+ ++++ .+|+.+.+|+||+|+|||||||++||+|.++ +..+.+|..+... ...
T Consensus 4 ~~~~W~l~~i~~~-~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~------------~~~~~~~~~~~~~-------~~~ 63 (310)
T 2ixt_A 4 QQIPWGIKAIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------VEQCKDFTGATTP-------INN 63 (310)
T ss_dssp CSSCHHHHHHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------EEEEEESSSSSSC-------EET
T ss_pred ccCCCchhhcCch-hhhhccCCCCCcEEEEEecCCCCCCHHHhhc------------ccccccccCCCCC-------CCC
Confidence 3456655 4455 8999999999999999999999999999864 2222233211100 013
Q ss_pred CCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCC-----eEE
Q 040462 190 TARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGV-----DII 263 (726)
Q Consensus 190 ~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gv-----dVI 263 (726)
...|..||||||||||+|....+ ...+.||||+|+|+.+|+++..+ ++.+++++||+|++++++ +||
T Consensus 64 ~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vi 136 (310)
T 2ixt_A 64 SCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII 136 (310)
T ss_dssp CCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEE
Confidence 45788999999999999974211 11238999999999999998876 788999999999999988 999
Q ss_pred EeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCC--CCccccCCCceEEEeeeccCcceeeEEEeCCCceEee
Q 040462 264 TVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN--LGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSG 341 (726)
Q Consensus 264 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g 341 (726)
|||||... ....+..++.++.++|++||+||||+|.. ...+++..|++|+|||++.... +
T Consensus 137 n~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~--------~------ 198 (310)
T 2ixt_A 137 SMSLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ--------N------ 198 (310)
T ss_dssp EECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE--------T------
T ss_pred EEcCCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc--------C------
Confidence 99999872 24567777888999999999999999976 3456778899999999763210 0
Q ss_pred eeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceee
Q 040462 342 YSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFV 421 (726)
Q Consensus 342 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 421 (726)
T Consensus 199 -------------------------------------------------------------------------------- 198 (310)
T 2ixt_A 199 -------------------------------------------------------------------------------- 198 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCC----CCCcCCceEeCCccEEeecC
Q 040462 422 VSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAIL----PDILKPDISAPGVDILAAVS 497 (726)
Q Consensus 422 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~----~~~lKPDI~APG~~I~sa~~ 497 (726)
....++.||++||.... ..+.||||+|||++|+++++
T Consensus 199 ---------------------------------------g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~ 239 (310)
T 2ixt_A 199 ---------------------------------------GTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY 239 (310)
T ss_dssp ---------------------------------------TEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECT
T ss_pred ---------------------------------------CCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecC
Confidence 00156889999995421 12359999999999999987
Q ss_pred CCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC----CCCCCCcCCCCc
Q 040462 498 PLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK----VNDAEVAFGSGH 573 (726)
Q Consensus 498 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~----~~~~~~~~G~G~ 573 (726)
.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.... .+..+..||||+
T Consensus 240 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~a~~g~d~~~G~G~ 306 (310)
T 2ixt_A 240 NG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGF 306 (310)
T ss_dssp TS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCB
T ss_pred CC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccccCCccccccce
Confidence 54 7999999999999999999999999999999999999999999876431 345788999999
Q ss_pred cCc
Q 040462 574 VNP 576 (726)
Q Consensus 574 vn~ 576 (726)
+|+
T Consensus 307 ~~v 309 (310)
T 2ixt_A 307 ARV 309 (310)
T ss_dssp CCC
T ss_pred eec
Confidence 986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-51 Score=427.81 Aligned_cols=265 Identities=22% Similarity=0.234 Sum_probs=213.2
Q ss_pred CCCC-CCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 129 HSVE-SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 129 ~~~G-~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
..+| +||+|||||||||++||+|.++. ..+.++... .......|.+||||||||||+|
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~------------~~~~~~~~~---------~~~~~d~~~~gHGT~VAGiiag 61 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD------------LTVLPTLAP---------TAARSDGFMSAHGTHVASIIFG 61 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE------------EEECCCSSC---------CCCCTTCHHHHHHHHHHHHHHC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe------------eecCcCCCC---------CCCCCCCCCCCcccceeehhhc
Confidence 3578 69999999999999999998651 111111100 0112233457999999999999
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAF 285 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~ 285 (726)
+... .+.||||+|+|+.+|++.+.+ .+..++++||+||++++++|||||||...........+..++.
T Consensus 62 ~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~ai~ 131 (282)
T 3zxy_A 62 QPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVS 131 (282)
T ss_dssp CTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHHHH
T ss_pred cCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHHHH
Confidence 7421 238999999999999986543 6788999999999999999999999976333445567788888
Q ss_pred HHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCC
Q 040462 286 HAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSES 365 (726)
Q Consensus 286 ~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 365 (726)
.+.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 132 ~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------------- 170 (282)
T 3zxy_A 132 LCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH----------------------------------------- 170 (282)
T ss_dssp HHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-----------------------------------------
T ss_pred HHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-----------------------------------------
Confidence 999999999999999999888888999999999997544
Q ss_pred CCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCC
Q 040462 366 CPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTK 445 (726)
Q Consensus 366 ~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~ 445 (726)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhH
Q 040462 446 KPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACP 525 (726)
Q Consensus 446 ~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 525 (726)
+.++.||+||+. ..||||+|||++|+++++.+ .|..++|||||||
T Consensus 171 -----------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP 215 (282)
T 3zxy_A 171 -----------------GHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG-------------GTERLSGTAFATP 215 (282)
T ss_dssp -----------------SCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS-------------CEEEECSHHHHHH
T ss_pred -----------------CccccccCCCCC-----ccccceeccCcceeeecCCC-------------ceeecCCCcccch
Confidence 456789999875 36889999999999998765 7999999999999
Q ss_pred HHHHHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 526 HAAAVAAYVKSFH----PDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 526 ~VAG~aALl~~~~----P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
||||++|||++++ |.++|++||++|++||+++... .+.....||+|+||+.+|++
T Consensus 216 ~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 216 IVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-CCCccCceeeeEeCHHHHHH
Confidence 9999999999875 7899999999999999987653 23456789999999999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-51 Score=433.99 Aligned_cols=276 Identities=24% Similarity=0.288 Sum_probs=223.5
Q ss_pred cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCC
Q 040462 117 DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDG 196 (726)
Q Consensus 117 ~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~g 196 (726)
++.|++ ++|+....++||+|||||||||++||+|.++. +.+ ..+|.. .+.....|..|
T Consensus 6 ~i~G~~-~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~-------~~~----~~~~~~----------~~~~~~~d~~g 63 (306)
T 4h6w_A 6 NIPGLK-KLWSETRGDPKICVAVLDGIVDQNHPCFIGAD-------LTR----LPSLVS----------GEANANGSMST 63 (306)
T ss_dssp -CTTHH-HHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE-------EEE----CC--------------------CCCCH
T ss_pred CCcCHH-HHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc-------ccC----CCcccC----------CCCCCCCCCCC
Confidence 455777 89999877799999999999999999998651 110 001100 01223456789
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC--CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG--CASTDILAAFDDAIADGVDIITVSLGGNIPVD 274 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~ 274 (726)
|||||||||+|+.. +.+.||||+|+|+.+|++.+.+ +...++++||+||++++++|||+|||......
T Consensus 64 HGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~ 133 (306)
T 4h6w_A 64 HGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAG 133 (306)
T ss_dssp HHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS
T ss_pred chHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCC
Confidence 99999999999742 1238999999999999986643 78888999999999999999999999753344
Q ss_pred ccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCcee
Q 040462 275 FIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKF 354 (726)
Q Consensus 275 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~ 354 (726)
.....++.++..+.++|+++|++|||+|.....++...+++|+|||++.+
T Consensus 134 ~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 183 (306)
T 4h6w_A 134 EADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------------------------------ 183 (306)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT------------------------------
T ss_pred CccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC------------------------------
Confidence 45667888888999999999999999999888888899999999997544
Q ss_pred eEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhH
Q 040462 355 PLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENF 434 (726)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~ 434 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccce
Q 040462 435 NSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
..++.||++|+. ..||||+|||++|+++++.+ .|
T Consensus 184 ----------------------------~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~~-------------~~ 217 (306)
T 4h6w_A 184 ----------------------------GKPVDFSNWGDA-----YQKQGILAPGKDILGAKPNG-------------GT 217 (306)
T ss_dssp ----------------------------SCBCSSSCBCHH-----HHHHEEEEECSSEEEECTTS-------------CE
T ss_pred ----------------------------CCccccccccCC-----cCcceeecCCcCcccccCCC-------------ce
Confidence 456788999864 35889999999999998764 79
Q ss_pred eecccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 515 SIESGTSMACPHAAAVAAYVKSF----HPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~----~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
..++|||||||||||++|||+++ +|.|+|++||++|++||+++...+ ......||+|+||+.+|++
T Consensus 218 ~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 218 IRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT-CSCGGGGTTCBCCHHHHHH
T ss_pred eccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC-CCCCCCcceeecCHHHHHH
Confidence 99999999999999999999865 699999999999999999886532 2344579999999999987
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=438.58 Aligned_cols=279 Identities=23% Similarity=0.218 Sum_probs=223.3
Q ss_pred CCCccc--cccchhhccCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCC
Q 040462 113 TRSWDF--MGLNQSITRKHSVES--NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTD 188 (726)
Q Consensus 113 ~~s~~~--~g~~~~~w~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~ 188 (726)
..+|.+ ++++ .+|+. .+|+ ||+||||||||| +||+|.++ ...+.+|..+.. .+ ..
T Consensus 22 ~~~W~l~~i~~~-~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~------------~~~~~~~~~~~~-----~~-~~ 80 (347)
T 2iy9_A 22 EKPWYFDAIGLT-ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS------------EFAKFSFTQDGS-----PF-PV 80 (347)
T ss_dssp -CCHHHHHHTCC-HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC------------EEEEEECBTTCC-----SS-CC
T ss_pred ccCcchhhCChH-HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC------------cccCCcccCCCC-----CC-CC
Confidence 456654 5566 89998 8999 999999999999 99999864 112222321100 00 01
Q ss_pred CCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhC------CCeE
Q 040462 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIAD------GVDI 262 (726)
Q Consensus 189 ~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~------gvdV 262 (726)
..+.|..||||||||||+|+ .|. .||||+|+|+.+|+++..+.. ++++||+||+++ |++|
T Consensus 81 ~~~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~V 146 (347)
T 2iy9_A 81 KKSEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKI 146 (347)
T ss_dssp SSSHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEE
T ss_pred CCCCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceE
Confidence 24567899999999999997 122 899999999999999875533 999999999999 9999
Q ss_pred EEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCC-------CCccccCCC----------ceEEEeeecc--
Q 040462 263 ITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSN-------LGFVYSVAP----------WLMSVAASTT-- 323 (726)
Q Consensus 263 In~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vitVgA~~~-- 323 (726)
||||||.. ......+.+..++..+.++|++||+||||+|.. ...+++..+ ++|+|||++.
T Consensus 147 in~S~G~~-~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~ 225 (347)
T 2iy9_A 147 INISGGQK-GVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYR 225 (347)
T ss_dssp EEESSCBC-CC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCC
T ss_pred EEeccccC-CCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCC
Confidence 99999976 223456778888889999999999999999985 345677888 9999999865
Q ss_pred CcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhc
Q 040462 324 DRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKV 403 (726)
Q Consensus 324 ~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~ 403 (726)
+....
T Consensus 226 ~g~~~--------------------------------------------------------------------------- 230 (347)
T 2iy9_A 226 KGETP--------------------------------------------------------------------------- 230 (347)
T ss_dssp TTSCC---------------------------------------------------------------------------
T ss_pred CCcee---------------------------------------------------------------------------
Confidence 31000
Q ss_pred CceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCC
Q 040462 404 GAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKP 483 (726)
Q Consensus 404 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKP 483 (726)
......+.||++||+ ||
T Consensus 231 --------------------------------------------------------~~~~~~~~fS~~G~~-------~~ 247 (347)
T 2iy9_A 231 --------------------------------------------------------VLHGGGITGSRFGNN-------WV 247 (347)
T ss_dssp --------------------------------------------------------CBCCCSSSCBCBCTT-------TC
T ss_pred --------------------------------------------------------cccCCCCCCCCCCCC-------CC
Confidence 001345799999995 67
Q ss_pred ceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCC
Q 040462 484 DISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVN 563 (726)
Q Consensus 484 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~ 563 (726)
||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 248 di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~--- 311 (347)
T 2iy9_A 248 DIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL--- 311 (347)
T ss_dssp SEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG---
T ss_pred EEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC---
Confidence 9999999999998754 799999999999999999999999999999999999999999987664
Q ss_pred CCCCcCCCCccCccccCCC
Q 040462 564 DAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 564 ~~~~~~G~G~vn~~~A~~~ 582 (726)
.+..+|+|+||+.+|++.
T Consensus 312 -~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 312 -VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp -TTTSGGGEECCHHHHHHH
T ss_pred -CCccccCCEecHHHHHHH
Confidence 246899999999999974
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=435.81 Aligned_cols=289 Identities=26% Similarity=0.374 Sum_probs=227.8
Q ss_pred CCCccc-----cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCce---------
Q 040462 113 TRSWDF-----MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNK--------- 178 (726)
Q Consensus 113 ~~s~~~-----~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~k--------- 178 (726)
..+|.+ ++++ .+|+.+++|+||+||||||||+ +||+|.++- ..+++|..+..
T Consensus 8 ~~qW~l~~~~~i~~~-~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~------------~~~~~~~~~~~~~~d~~~~~ 73 (340)
T 3lpc_A 8 REQWHYFDRYGVKAD-KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV------------LPGYDFISNSQISLDGDGRD 73 (340)
T ss_dssp GGCHHHHSTTSCCHH-HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB------------CCCEECCCCHHHHCSSSSSB
T ss_pred hhccCCCCcCCCCHH-HHHHhcCCCCCeEEEEEcCCCC-CChhhhccc------------ccCccccCCccccccCCCcc
Confidence 456776 5566 8999999999999999999998 999998641 11122211100
Q ss_pred ---eeeeeecC---------CCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHH
Q 040462 179 ---LIGARYYT---------TDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST 246 (726)
Q Consensus 179 ---lig~~~~~---------~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~ 246 (726)
.-...++. ......|..||||||||||+|...++. | +.||||+|+|+.+|+++..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~ 145 (340)
T 3lpc_A 74 ADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDS 145 (340)
T ss_dssp SCCBCCCCCBCTTTTSCTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHH
T ss_pred CCccccccccccccccCCCCcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHH
Confidence 00000000 112357889999999999999753322 2 389999999999999988778899
Q ss_pred HHHHHHHHHHh----------CCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCce
Q 040462 247 DILAAFDDAIA----------DGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLG-FVYSVAPWL 315 (726)
Q Consensus 247 ~i~~ai~~A~~----------~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~v 315 (726)
+++++|+||++ ++++|||||||... .....+..++..+.++|++||+||||+|.... .++...+++
T Consensus 146 ~~~~ai~~a~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~v 222 (340)
T 3lpc_A 146 DISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNV 222 (340)
T ss_dssp HHHHHHHHHHTCCCTTSCCCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSC
T ss_pred HHHHHHHHHhcccccccccccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCce
Confidence 99999999998 89999999999752 23455677778899999999999999998654 467788999
Q ss_pred EEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecc
Q 040462 316 MSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFD 395 (726)
Q Consensus 316 itVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~ 395 (726)
|+|||++.+
T Consensus 223 i~Vga~~~~----------------------------------------------------------------------- 231 (340)
T 3lpc_A 223 LSVGATTSR----------------------------------------------------------------------- 231 (340)
T ss_dssp EEEEEECTT-----------------------------------------------------------------------
T ss_pred EEEecCCCC-----------------------------------------------------------------------
Confidence 999997644
Q ss_pred hhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCC
Q 040462 396 GYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNA 475 (726)
Q Consensus 396 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~ 475 (726)
+.++.||++||
T Consensus 232 -------------------------------------------------------------------~~~~~~S~~g~-- 242 (340)
T 3lpc_A 232 -------------------------------------------------------------------GIRASFSNYGV-- 242 (340)
T ss_dssp -------------------------------------------------------------------SSBCTTCCBST--
T ss_pred -------------------------------------------------------------------CCcCCCCCCCC--
Confidence 45688999998
Q ss_pred CCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHH
Q 040462 476 ILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSF-H---PDWSPSAIRSAIM 551 (726)
Q Consensus 476 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~~sp~~Ik~~L~ 551 (726)
||||+|||++|+++++.... ......|..++|||||||||||++|||+|+ + |.|++++||++|+
T Consensus 243 ------~~di~ApG~~i~s~~~~~~~------~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~ 310 (340)
T 3lpc_A 243 ------DVDLAAPGQDILSTVDSGTR------RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLV 310 (340)
T ss_dssp ------TCCEEEECSSEEEEEESCSS------SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ------CceEEecCCCeecccCCCCc------CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHH
Confidence 45999999999999876521 111246999999999999999999999998 5 9999999999999
Q ss_pred hccccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 552 TTAWPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 552 ~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
+||+++... .+..||+|+||+.+|++.
T Consensus 311 ~tA~~~~~~----~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 311 STTSPFNGR----LDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp HTCBCCSSC----CSSCCCSSBCCHHHHHHH
T ss_pred hcCCcCCCC----CCCCcccceecHHHHHHH
Confidence 999988543 567899999999999874
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=431.06 Aligned_cols=273 Identities=27% Similarity=0.380 Sum_probs=223.3
Q ss_pred CCCccc--cccchhhccCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCC
Q 040462 113 TRSWDF--MGLNQSITRKHSVES--NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTD 188 (726)
Q Consensus 113 ~~s~~~--~g~~~~~w~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~ 188 (726)
..+|.+ ++++ .+|+.+ +|+ ||+|||||||||++||+|.++ ...+.+|..+. . ....
T Consensus 7 ~~~W~l~~i~~~-~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~------------~~~~~~~~~~~-~-----~~~~ 66 (320)
T 2z30_A 7 TIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------IAWCVSTLRGK-V-----STKL 66 (320)
T ss_dssp CCCHHHHHTTCG-GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG------------EEEEEECGGGC-C-----BCCH
T ss_pred CCCCChhhcChH-HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc------------cccCccccCCc-c-----CCCC
Confidence 346655 4555 899987 999 999999999999999999864 11122221110 0 0001
Q ss_pred CCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC---------
Q 040462 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD--------- 258 (726)
Q Consensus 189 ~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~--------- 258 (726)
....|..||||||||||+|.. +..| +.||||+|+|+.+|+++..| +..+++++||+||+++
T Consensus 67 ~~~~d~~gHGT~vAgiia~~~----n~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~ 137 (320)
T 2z30_A 67 RDCADQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDG 137 (320)
T ss_dssp HHHBCSSSHHHHHHHHHHCCS----SSBS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTS
T ss_pred CCCCCCCCCHHHHHHHHHccc----CCCc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCccccccccc
Confidence 124678999999999999962 1112 38999999999999998877 7889999999999987
Q ss_pred -----------CCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcce
Q 040462 259 -----------GVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLF 327 (726)
Q Consensus 259 -----------gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~ 327 (726)
+++|||||||.... ...+..++.++.++|++||+||||+|.....+++..|++|+|||++.+
T Consensus 138 ~~~~~~~~~~~~~~Vin~S~G~~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--- 210 (320)
T 2z30_A 138 DGIIAGDPDDDAAEVISMSLGGPAD----DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN--- 210 (320)
T ss_dssp SSCCTTCTTSCCCSEEEECEEBSCC----CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---
T ss_pred ccccccccccCCceEEEecCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC---
Confidence 99999999998732 356677777899999999999999998877888899999999997643
Q ss_pred eeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceE
Q 040462 328 VDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAG 407 (726)
Q Consensus 328 ~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g 407 (726)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEe
Q 040462 408 SILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISA 487 (726)
Q Consensus 408 ~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~A 487 (726)
+.++.||++|| +|+|
T Consensus 211 -------------------------------------------------------~~~~~~S~~g~----------~v~A 225 (320)
T 2z30_A 211 -------------------------------------------------------DNIASFSNRQP----------EVSA 225 (320)
T ss_dssp -------------------------------------------------------SCBCTTSCSSC----------SEEE
T ss_pred -------------------------------------------------------CCcCcccCCCC----------CEEe
Confidence 45688999997 7899
Q ss_pred CCccEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHhcc
Q 040462 488 PGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFH-------------PDWSPSAIRSAIMTTA 554 (726)
Q Consensus 488 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------P~~sp~~Ik~~L~~TA 554 (726)
||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++.+||++|++||
T Consensus 226 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta 292 (320)
T 2z30_A 226 PGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 292 (320)
T ss_dssp ECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHS
T ss_pred CCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhC
Confidence 999999998754 79999999999999999999999999 9999999999999999
Q ss_pred ccCCCCCCCCCCCcCCCCccCccccCCC
Q 040462 555 WPMNSSKVNDAEVAFGSGHVNPVKAVNP 582 (726)
Q Consensus 555 ~~i~~~~~~~~~~~~G~G~vn~~~A~~~ 582 (726)
+++.. +..+..||+|+||+.+|++.
T Consensus 293 ~~~~~---~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 293 DDLGP---TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp BCCSS---SSSBTTTBTCBCCHHHHHHH
T ss_pred ccCCC---CCCCCCcCCceeCHHHHHHH
Confidence 98754 23567899999999999863
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=439.32 Aligned_cols=297 Identities=27% Similarity=0.321 Sum_probs=231.9
Q ss_pred ccccccchhhcc-CCCCCCCcEEEEEcccCCC------CCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCC
Q 040462 116 WDFMGLNQSITR-KHSVESNIIIGVIDSGIWP------ESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTD 188 (726)
Q Consensus 116 ~~~~g~~~~~w~-~~~~G~gV~VgVIDtGid~------~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~ 188 (726)
.++++++ .+|+ .+.+|+||+|||||||||+ .||+|.++ ++..++|.+.
T Consensus 5 ~~~i~~~-~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~------------------------i~~~~~~~~~ 59 (434)
T 1wmd_A 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK------------------------ITALYALGRT 59 (434)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC------------------------EEEEEETTTT
T ss_pred hhhhCch-hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC------------------------EeeeccccCC
Confidence 4567888 8997 7999999999999999999 79999753 2333444444
Q ss_pred CCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCC---CHHHHHHHHHHHHhCCCeEEEe
Q 040462 189 GTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGC---ASTDILAAFDDAIADGVDIITV 265 (726)
Q Consensus 189 ~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~A~~~gvdVIn~ 265 (726)
..+.|..||||||||||+|+.. + +.||||+|+|+.+|+++..|. ..+++.++|++|+++|++||||
T Consensus 60 ~~~~d~~gHGT~VAgiiag~g~----------~-~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~ 128 (434)
T 1wmd_A 60 NNANDTNGHGTHVAGSVLGNGS----------T-NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTN 128 (434)
T ss_dssp TCCCCSSSHHHHHHHHHHCCSS----------S-SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCCcHHHHHHHHHcCCC----------C-ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEe
Confidence 5678899999999999998631 1 389999999999999987663 4578999999999999999999
Q ss_pred ccCCCCCCCccccHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEEeeeccCcceeeEEEeCCCceEeee
Q 040462 266 SLGGNIPVDFIKDAIAIGAFHA-MEKGILTLNSAGNSGSNLG--FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGY 342 (726)
Q Consensus 266 S~G~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~ 342 (726)
|||......+ +....++..+ .++|++||+||||+|.... ..++.++++|+|||++..+.....
T Consensus 129 S~G~~~~~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~~~------------ 194 (434)
T 1wmd_A 129 SWGAAVNGAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS------------ 194 (434)
T ss_dssp CCCBCCTTCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG------------
T ss_pred cCCCCcCCcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcccCc------------
Confidence 9998732222 3444555555 5899999999999998643 456789999999998764310000
Q ss_pred eeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeee
Q 040462 343 SINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVV 422 (726)
Q Consensus 343 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 422 (726)
T Consensus 195 -------------------------------------------------------------------------------- 194 (434)
T 1wmd_A 195 -------------------------------------------------------------------------------- 194 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCC
Q 040462 423 SLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPI 502 (726)
Q Consensus 423 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 502 (726)
.....+.++.||++||+. ++++||||+|||++|+++++.....
T Consensus 195 -----------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~ 237 (434)
T 1wmd_A 195 -----------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPD 237 (434)
T ss_dssp -----------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCG
T ss_pred -----------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCC
Confidence 001126789999999998 8999999999999999998653210
Q ss_pred CCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCcc
Q 040462 503 STDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDW-----SPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPV 577 (726)
Q Consensus 503 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~-----sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~ 577 (726)
... .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ...+..||||++|+.
T Consensus 238 ~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~---~~~~~~~G~G~vd~~ 313 (434)
T 1wmd_A 238 SSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL---GYPNGNQGWGRVTLD 313 (434)
T ss_dssp GGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS---CSSCTTTTTCBCCHH
T ss_pred ccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC---CCCCccCCcCeEeHH
Confidence 000 00113579999999999999999999999999875 999999999999998643 236789999999999
Q ss_pred ccCCCc
Q 040462 578 KAVNPG 583 (726)
Q Consensus 578 ~A~~~g 583 (726)
+|++..
T Consensus 314 ~a~~~~ 319 (434)
T 1wmd_A 314 KSLNVA 319 (434)
T ss_dssp HHHTCE
T ss_pred Hhcccc
Confidence 999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=405.35 Aligned_cols=235 Identities=27% Similarity=0.351 Sum_probs=202.1
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|..+.+|+||+|+|||||||++||+|.++ ...+++|. .+...+.|..||||||||
T Consensus 20 ~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~------------~~~~~~~~-----------~~~~~~~d~~gHGT~vAg 76 (284)
T 1sh7_A 20 RNYNANFDGFGVTAYVIDTGVNNNHEEFGGR------------SVSGYDFV-----------DNDADSSDCNGHGTHVAG 76 (284)
T ss_dssp SBCCCSCCCTTCEEEEEESCCCTTCTTTTTC------------EEEEEETT-----------TTBSCCCCSSSHHHHHHH
T ss_pred hhhhcCCCCCCCEEEEEcCCCCCCChhHcCC------------cccccccc-----------CCCCCCCCCCCcHHHHHH
Confidence 6899999999999999999999999999864 11222222 223456789999999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC--CCeEEEeccCCCCCCCccccHH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD--GVDIITVSLGGNIPVDFIKDAI 280 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~--gvdVIn~S~G~~~~~~~~~~~~ 280 (726)
||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|++++ +++|||||||.. ....+
T Consensus 77 iia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~-----~~~~~ 137 (284)
T 1sh7_A 77 TIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG-----QSTAL 137 (284)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS-----CCHHH
T ss_pred HHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC-----CCHHH
Confidence 999873 6899999999999998876 7889999999999984 799999999986 24567
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEec
Q 040462 281 AIGAFHAMEKGILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHG 359 (726)
Q Consensus 281 ~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~ 359 (726)
..++.++.++|++||+||||+|.... .++...|++|+|||++.+
T Consensus 138 ~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 182 (284)
T 1sh7_A 138 DSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS----------------------------------- 182 (284)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-----------------------------------
T ss_pred HHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-----------------------------------
Confidence 77888999999999999999997653 457789999999997643
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHH
Q 040462 360 KEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 360 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 439 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccc
Q 040462 440 YKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519 (726)
Q Consensus 440 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 519 (726)
+.++.||++||.. ||+|||++|+++++.+ .|..++|
T Consensus 183 -----------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~-------------~~~~~sG 218 (284)
T 1sh7_A 183 -----------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISG 218 (284)
T ss_dssp -----------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-------------SEEEECS
T ss_pred -----------------------CCcCcccCCCCcc--------EEEeccCCeEEecCCC-------------CEEEccC
Confidence 4568899999976 9999999999998754 7999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 040462 520 TSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNS 559 (726)
Q Consensus 520 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~ 559 (726)
||||||||||++|||+|++|+|++++||++|++||++..-
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 219 TSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 9999999999999999999999999999999999987643
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=455.00 Aligned_cols=399 Identities=21% Similarity=0.224 Sum_probs=261.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCC----CCCCCCCCcchhhhccccCc
Q 040462 134 NIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDG----TARDKDGHGTHTASTAAGNE 209 (726)
Q Consensus 134 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~----~~~D~~gHGThVAgiaag~~ 209 (726)
+|+|||||||++.+|++.... ..|+..-+.+ .| .+.+-+..++.++. ...|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg-~F--~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~ 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETR-NV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCC-EE--SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC
T ss_pred CEEEEEEeCCCCCCccccccc------cccccccccc-cc--ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC
Confidence 699999999998776654210 0110000100 11 11222222221111 12578999999999999985
Q ss_pred CCCCccccccCcceeecccCceEEEEEeeCCCC---CCHHHHHHHHHHHHh-----CCCeEEEeccCCCCCCCccccHHH
Q 040462 210 VKDASFYGVGQGTARGGVPSARIAAYKVCNPSG---CASTDILAAFDDAIA-----DGVDIITVSLGGNIPVDFIKDAIA 281 (726)
Q Consensus 210 ~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~-----~gvdVIn~S~G~~~~~~~~~~~~~ 281 (726)
++ ..+.||||+|+|+.+|+++..+ ++..+++.+|.+|++ .|++|||||||... .....+.+.
T Consensus 285 -N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~~l~ 354 (1354)
T 3lxu_X 285 -SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSGRIG 354 (1354)
T ss_dssp -SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCCHHH
T ss_pred -CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccHHHH
Confidence 21 1238999999999999997653 366788888888888 79999999999973 223346677
Q ss_pred HHHHHHH-hCCcEEEEecCCCCCCCCc--ccc--CCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeE
Q 040462 282 IGAFHAM-EKGILTLNSAGNSGSNLGF--VYS--VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPL 356 (726)
Q Consensus 282 ~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l 356 (726)
.++.+|. ++|++||+||||+|++..+ .++ .++++|+|||++.+..........
T Consensus 355 ~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~~---------------------- 412 (1354)
T 3lxu_X 355 ELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMR---------------------- 412 (1354)
T ss_dssp HHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------------------------
T ss_pred HHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccccc----------------------
Confidence 7777876 8999999999999986544 445 389999999987553211100000
Q ss_pred EecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHH
Q 040462 357 VHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNS 436 (726)
Q Consensus 357 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~ 436 (726)
T Consensus 413 -------------------------------------------------------------------------------- 412 (1354)
T 3lxu_X 413 -------------------------------------------------------------------------------- 412 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceee
Q 040462 437 LISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSI 516 (726)
Q Consensus 437 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 516 (726)
....+.++.|||+||+. ++++||||+|||++|+++.... ...|..
T Consensus 413 ----------------------~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~-----------~~~y~~ 457 (1354)
T 3lxu_X 413 ----------------------EKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFT-----------MSKSQL 457 (1354)
T ss_dssp ---------------------------CCCCCCCCSCCS--SSSCCEEEEEEC--------------------------C
T ss_pred ----------------------cCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCC-----------CCceec
Confidence 01125789999999997 8999999999999999875432 137899
Q ss_pred cccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCCcccccCChhh
Q 040462 517 ESGTSMACPHAAAVAAYVKS----FHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQD 592 (726)
Q Consensus 517 ~sGTSmAaP~VAG~aALl~~----~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~d 592 (726)
++|||||||||||++|||++ .+|+|++++||++|++||+++... .++.||+|+||+.+|++..+.|+..+.+
T Consensus 458 ~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~----~~~~~G~GlLDa~~AV~~a~~~~~~p~~ 533 (1354)
T 3lxu_X 458 MNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQGHGLLNVEKAFEHLTEHRQSKDN 533 (1354)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS----CTTTSSSSBCCHHHHHHHHHTTTTCGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC----CcccccCCEeCHHHHHHHHHhcCCCCcc
Confidence 99999999999999999986 799999999999999999998653 5678999999999999999999999999
Q ss_pred HHHhhhcCCCCc-ceeeeecCCCcccCCCCCCCCCCCCCCceEEEeecCCCCceEEEEEEEEe---ccCC-CeeE--EEE
Q 040462 593 YIKILCSIGYNE-SIVRSISGDNSTCPKGSNKLSAKDLNYPSMAAQVSRAKPFTVNFPRIVTN---VGLA-NSTY--RAK 665 (726)
Q Consensus 593 y~~~lc~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtvtn---vg~~-~~ty--~~~ 665 (726)
|+.|+|..++.. ..|.. ..+ .|.. |+ ...++|+-+..| .... ...+ ++.
T Consensus 534 ~v~f~~~v~~~~~rgIyl--R~~-~~~~------------~~---------~~tv~V~p~f~~~~~~~~~~~i~f~~~l~ 589 (1354)
T 3lxu_X 534 MLRFSVRVGNNADKGIHL--RQG-VQRN------------SI---------DYNVYIEPIFYNDKEADPKDKFNFNVRLN 589 (1354)
T ss_dssp GEEEEEEETTTTBSSEEE--CSS-CCCS------------CE---------EEEEEEEEEESSCSCSSSTTCSCCCCEEE
T ss_pred ceEEEEEecCCCCCceEE--ecc-ccCC------------ce---------EEEEEEeeeecCcccCChhhccceEEEEE
Confidence 999999998633 33321 111 1100 00 012223333321 1111 1111 111
Q ss_pred EEeecceeEEEEe------cceeeEEEEEEeccCCCCCCeEEEEEEEEc-----CCeEEEeeEEEE
Q 040462 666 FFQKFTIISVKVV------PEKKPFVVTVTGKGLPESGTVVPATLVWSD-----GIHSVRSPIVVH 720 (726)
Q Consensus 666 v~~~p~g~~v~v~------p~~~~~~vt~~~~~~~~~~~~~~G~~~~~~-----~~~~vr~p~~~~ 720 (726)
+....+ -|++. -+..+|.|+|+.+.. .....+++|...| .....|+||.|.
T Consensus 590 L~~t~~--wv~~p~~l~l~~~~r~~~v~vDp~~L--~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 590 LIASQP--WVQCGAFLDLSYGTRSIAVRVDPTGL--QPGVHSAVIRAYDTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp EEESST--TEEECSCEECTTSCEEEEEEECGGGC--CSEEEEEEEEEEESSCTTSCCSEEEEEEEE
T ss_pred EecCCC--ceecccceeecCCCceEEEEECCCCC--CCcceeEEEEEEEcCCcccCceEEeeEEEE
Confidence 111011 11111 188899999998874 3467899998765 247889999885
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=401.78 Aligned_cols=235 Identities=29% Similarity=0.372 Sum_probs=201.0
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|..+++|+||+|+|||||||++||+|.++ ...+++|. .+...+.|..||||||||
T Consensus 22 ~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~------------~~~~~d~~-----------~~~~~~~d~~gHGT~vAg 78 (278)
T 2b6n_A 22 NNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR------------ASSGYDFI-----------DNDYDATDCNGHGTHVAG 78 (278)
T ss_dssp SEEECSCCCTTCEEEEEESCCCTTCGGGTTC------------EEEEEETT-----------TTBSCCCCSSSHHHHHHH
T ss_pred hhcccCCCCCCCEEEEEeCCCCCCChhHhcc------------cccCeecC-----------CCCCCCCCCCCcHHHHHH
Confidence 6799999999999999999999999999864 22222322 123456789999999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHh--CCCeEEEeccCCCCCCCccccHH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIA--DGVDIITVSLGGNIPVDFIKDAI 280 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~--~gvdVIn~S~G~~~~~~~~~~~~ 280 (726)
||+|+. .||||+|+|+.+|++++.+ ++.+++++||+|+++ .+++|||||||... ...+
T Consensus 79 iia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~-----~~~~ 139 (278)
T 2b6n_A 79 TIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA-----SQAT 139 (278)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC-----CHHH
T ss_pred HHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc-----CHHH
Confidence 999862 7899999999999998776 788999999999998 59999999999862 4567
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEec
Q 040462 281 AIGAFHAMEKGILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHG 359 (726)
Q Consensus 281 ~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~ 359 (726)
..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 140 ~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 184 (278)
T 2b6n_A 140 DDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN----------------------------------- 184 (278)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------------
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-----------------------------------
Confidence 77888999999999999999998654 357788999999997644
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHH
Q 040462 360 KEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 360 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 439 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccc
Q 040462 440 YKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519 (726)
Q Consensus 440 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 519 (726)
+.++.||++||.. ||+|||++|++++... ...|..++|
T Consensus 185 -----------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~-----------~~~~~~~sG 222 (278)
T 2b6n_A 185 -----------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTS-----------NSATNTISG 222 (278)
T ss_dssp -----------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-----------TTCEEEECS
T ss_pred -----------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCC-----------CCCEEEeCc
Confidence 4568899999855 9999999999998653 137899999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 040462 520 TSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 520 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i 557 (726)
||||||||||++|||+|++|+|++++||++|++||++.
T Consensus 223 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 223 TSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999999999999864
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=401.23 Aligned_cols=240 Identities=28% Similarity=0.339 Sum_probs=205.2
Q ss_pred hccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhc
Q 040462 125 ITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAST 204 (726)
Q Consensus 125 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgi 204 (726)
.|. ..+|+||+|+|||||||++||+|.++ . ...++|. ..+.|..|||||||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~------------~------------~~~~~~~--~~~~d~~gHGT~vAgi 76 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR------------A------------QMVKTYY--YSSRDGNGHGTHCAGT 76 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC------------E------------EEEEESS--SCSSCSSSHHHHHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc------------c------------ccccCCC--CCCCCCCCCHHHHHHH
Confidence 454 37999999999999999999999864 1 1222332 3467899999999999
Q ss_pred cccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCC-------eEEEeccCCCCCCCcc
Q 040462 205 AAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGV-------DIITVSLGGNIPVDFI 276 (726)
Q Consensus 205 aag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gv-------dVIn~S~G~~~~~~~~ 276 (726)
|+|+. .||||+|+|+.+|+++..+ ++.+++++||+|++++++ +|||||||.. .
T Consensus 77 ia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~-----~ 137 (279)
T 2pwa_A 77 VGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-----Y 137 (279)
T ss_dssp HHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----C
T ss_pred HHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC-----C
Confidence 99862 7999999999999999877 889999999999999987 9999999975 2
Q ss_pred ccHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 277 KDAIAIGAFHAMEKGILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 277 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
.+.+..++.++.++|++||+||||+|.+.. .++...|++|+|||++.+
T Consensus 138 ~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 186 (279)
T 2pwa_A 138 SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------------------------- 186 (279)
T ss_dssp CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------------
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC-------------------------------
Confidence 467778888999999999999999998653 357789999999997644
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
+.++.||++||.. ||+|||++|+++++.+ .|.
T Consensus 187 ---------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~~-------------~~~ 218 (279)
T 2pwa_A 187 ---------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STR 218 (279)
T ss_dssp ---------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------------EEE
T ss_pred ---------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeecCC-------------CEE
Confidence 4568899999965 9999999999998764 799
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCcc
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPV 577 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~ 577 (726)
.++|||||||||||++|||+|+ |++++++||++|++||++... ..+|+|..|+.
T Consensus 219 ~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~-------~~~~~g~~n~l 272 (279)
T 2pwa_A 219 SISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL-------SNIPFGTVNLL 272 (279)
T ss_dssp EECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-------BSCCTTSCCEE
T ss_pred EcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-------CCCCCCCccEe
Confidence 9999999999999999999999 999999999999999998533 24788888874
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-47 Score=398.75 Aligned_cols=235 Identities=26% Similarity=0.332 Sum_probs=203.5
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|..+.+|+||+|+|||||||++||+|.++ +...+++. ...+.|..||||||||
T Consensus 22 ~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~-~~~~~d~~gHGT~vAg 76 (276)
T 4dzt_A 22 NSYTYTATGRGVNVYVIDTGIRTTHREFGGR------------------------ARVGYDAL-GGNGQDCNGHGTHVAG 76 (276)
T ss_dssp SCEECSCCCTTCEEEEEESCCCTTCGGGTTC------------------------EEEEEETT-SSCSCCSSSHHHHHHH
T ss_pred cceecCCCCCCcEEEEEccCCCCCChhHccC------------------------eeccccCC-CCCCCCCCCCHHHHHH
Confidence 6899999999999999999999999999764 11222222 2456788999999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC--CCeEEEeccCCCCCCCccccHH
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD--GVDIITVSLGGNIPVDFIKDAI 280 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~--gvdVIn~S~G~~~~~~~~~~~~ 280 (726)
||+|.. .||||+|+|+.+|++++.+ .+.++++++++|++++ +++|||||||.. ....+
T Consensus 77 iiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~-----~~~~~ 137 (276)
T 4dzt_A 77 TIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGG-----VSTAL 137 (276)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEE-----CCHHH
T ss_pred HHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCC-----CCHHH
Confidence 999873 7999999999999998876 8899999999999987 999999999976 24677
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcc-ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEec
Q 040462 281 AIGAFHAMEKGILTLNSAGNSGSNLGFV-YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHG 359 (726)
Q Consensus 281 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~ 359 (726)
..++.++.++|+++|+||||+|...... +...+++|+|||++.+
T Consensus 138 ~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 182 (276)
T 4dzt_A 138 DNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS----------------------------------- 182 (276)
T ss_dssp HHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------------
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-----------------------------------
Confidence 8888899999999999999999875443 7788999999997544
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHH
Q 040462 360 KEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLIS 439 (726)
Q Consensus 360 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 439 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeeccc
Q 040462 440 YKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESG 519 (726)
Q Consensus 440 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 519 (726)
+.++.||++||.. ||+|||++|++++.... ..|..++|
T Consensus 183 -----------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~-----------~~~~~~sG 220 (276)
T 4dzt_A 183 -----------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTSD-----------TATQTLNG 220 (276)
T ss_dssp -----------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTSS-----------SCEEEECS
T ss_pred -----------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCCC-----------CceEEeeE
Confidence 4668899999976 99999999999987541 37999999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 040462 520 TSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNS 559 (726)
Q Consensus 520 TSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~ 559 (726)
||||||||||++|||+|++|++++++||++|++||++...
T Consensus 221 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 221 TSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 9999999999999999999999999999999999998654
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=423.22 Aligned_cols=287 Identities=15% Similarity=0.131 Sum_probs=216.1
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
++++ .+|+.+++|+||+|||||||||++||+|.++-. -..+++|..++.- -.+...+.|..|||
T Consensus 25 i~~~-~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~----------~~~~~d~~~~~~~-----p~~~~~~~d~~gHG 88 (471)
T 1p8j_A 25 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD----------PGASFDVNDQDPD-----PQPRYTQMNDNRHG 88 (471)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC----------GGGCEETTTTBSC-----CCCCCCTTCTTCHH
T ss_pred CChH-HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC----------ccCcccccCCCCC-----CCCccCCCCCCCcH
Confidence 4556 899999999999999999999999999986410 0112333221100 00011356889999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCCCC---
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIPVD--- 274 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~~--- 274 (726)
|||||||+|...++. | +.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||......
T Consensus 89 T~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~ 157 (471)
T 1p8j_A 89 TRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVD 157 (471)
T ss_dssp HHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCB
T ss_pred HHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCCCCCccc
Confidence 999999999743221 1 28999999999999986 346789999999999 99999999999863211
Q ss_pred ccccHHHHHHHHHH-----hCCcEEEEecCCCCCCCCc----cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeec
Q 040462 275 FIKDAIAIGAFHAM-----EKGILTLNSAGNSGSNLGF----VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSIN 345 (726)
Q Consensus 275 ~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~ 345 (726)
.....+..++..+. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 158 ~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~--------------------- 216 (471)
T 1p8j_A 158 GPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF--------------------- 216 (471)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT---------------------
T ss_pred CcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC---------------------
Confidence 11233444455554 3699999999999976322 22356899999997644
Q ss_pred cCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeee
Q 040462 346 SFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLP 425 (726)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 425 (726)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCC
Q 040462 426 AVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTD 505 (726)
Q Consensus 426 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 505 (726)
+.++.||++||.. ....+|+..+||.+|+++....
T Consensus 217 -------------------------------------g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~~~------ 251 (471)
T 1p8j_A 217 -------------------------------------GNVPWYSEACSST--LATTYSSGNQNEKQIVTTDLRQ------ 251 (471)
T ss_dssp -------------------------------------SCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEETTT------
T ss_pred -------------------------------------CCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeCCC------
Confidence 4568899999987 4445566666678999987643
Q ss_pred CCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC--------CCCCCCcCCCCccCcc
Q 040462 506 PEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK--------VNDAEVAFGSGHVNPV 577 (726)
Q Consensus 506 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~--------~~~~~~~~G~G~vn~~ 577 (726)
..|..++|||||||||||++|||+|++|+|++++||++|++||+++.... +...+..||+|+||+.
T Consensus 252 ------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~vda~ 325 (471)
T 1p8j_A 252 ------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAG 325 (471)
T ss_dssp ------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHH
T ss_pred ------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCCEEEcHh
Confidence 36999999999999999999999999999999999999999999876431 1113578999999999
Q ss_pred ccCCCcc
Q 040462 578 KAVNPGL 584 (726)
Q Consensus 578 ~A~~~gl 584 (726)
+|++...
T Consensus 326 ~Av~~a~ 332 (471)
T 1p8j_A 326 AMVALAQ 332 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-46 Score=419.58 Aligned_cols=279 Identities=17% Similarity=0.182 Sum_probs=216.6
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
+++. .+|+.+.+|+||+|||||||||++||+|.++- +. ..+++|..++. ......|..|||
T Consensus 41 i~~~-~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~~---~~~~d~~~~~~--------~~~p~~d~~gHG 101 (503)
T 2id4_A 41 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------CA---EGSWDFNDNTN--------LPKPRLSDDYHG 101 (503)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------CG---GGCEETTTTBS--------CCCCCSTTTTHH
T ss_pred cChH-HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------cc---cCcccCCCCCC--------CCCCCCCCCChH
Confidence 4555 89999999999999999999999999998751 10 11233322210 012235789999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCC---c
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVD---F 275 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~---~ 275 (726)
|||||||+|...++. | +.||||+|+|+.+|+++.. ++..++++||+|+++++ +|||||||...... .
T Consensus 102 T~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~~ 171 (503)
T 2id4_A 102 TRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQG 171 (503)
T ss_dssp HHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBC
T ss_pred HHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccccC
Confidence 999999999753221 1 2899999999999999743 67889999999999998 99999999763211 1
Q ss_pred cccHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--ccc--cCCCceEEEeeeccCcceeeEEEeCCCceEeeeeecc
Q 040462 276 IKDAIAIGAFHAM-----EKGILTLNSAGNSGSNLG--FVY--SVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346 (726)
Q Consensus 276 ~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~ 346 (726)
....+..++..+. .+|++||+||||+|.... .++ ..++++|+|||++.+
T Consensus 172 ~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~---------------------- 229 (503)
T 2id4_A 172 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK---------------------- 229 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----------------------
T ss_pred chHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC----------------------
Confidence 2244566666665 479999999999997532 222 367889999997644
Q ss_pred CCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeE
Q 040462 347 FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426 (726)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 426 (726)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEe----CCccEEeecCCCCCC
Q 040462 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISA----PGVDILAAVSPLAPI 502 (726)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~A----PG~~I~sa~~~~~~~ 502 (726)
+.++.||++||.. |++| ||.+|+++....
T Consensus 230 ------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~~~--- 262 (503)
T 2id4_A 230 ------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDING--- 262 (503)
T ss_dssp ------------------------------------SCCCTTCCCCTTE--------EEEEECSBTTBCEEEECSTT---
T ss_pred ------------------------------------CCcCCcCCCCCcc--------eEeecCCCCCCceEeecCCC---
Confidence 4568899999987 8887 899999995433
Q ss_pred CCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-C--------CCCCCCcCCCCc
Q 040462 503 STDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSS-K--------VNDAEVAFGSGH 573 (726)
Q Consensus 503 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~-~--------~~~~~~~~G~G~ 573 (726)
..|..++|||||||||||++|||+|++|+|++++||++|+.||+++... . +...+..||+|+
T Consensus 263 ---------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~ 333 (503)
T 2id4_A 263 ---------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGK 333 (503)
T ss_dssp ---------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCB
T ss_pred ---------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcccCCcE
Confidence 3799999999999999999999999999999999999999999987653 1 112356899999
Q ss_pred cCccccCCCcc
Q 040462 574 VNPVKAVNPGL 584 (726)
Q Consensus 574 vn~~~A~~~gl 584 (726)
||+.+|++...
T Consensus 334 vda~~Av~~a~ 344 (503)
T 2id4_A 334 IDAHKLIEMSK 344 (503)
T ss_dssp CCHHHHHHHHT
T ss_pred ecHHHHHHHHh
Confidence 99999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=390.46 Aligned_cols=228 Identities=29% Similarity=0.364 Sum_probs=196.0
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
.+|... +|+||+|+|||||||++||+|.++ +...+.|. ....|..||||||||
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~--~~~~d~~gHGT~vAg 76 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR------------------------AKQIKSYA--STARDGHGHGTHCAG 76 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEECS--SSSSCSSSHHHHHHH
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc------------------------cccccCCC--CCCCCCCCcHHHHHH
Confidence 456654 999999999999999999999764 22222332 223388999999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCC-------CeEEEeccCCCCCCCc
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADG-------VDIITVSLGGNIPVDF 275 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~g-------vdVIn~S~G~~~~~~~ 275 (726)
||+|+. .||||+|+|+.+|+++..+ ++.++++++++|+++++ ++|||||||..
T Consensus 77 ii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~----- 137 (279)
T 3f7m_A 77 TIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG----- 137 (279)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----
T ss_pred HHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC-----
Confidence 999862 7999999999999998876 88999999999999986 99999999975
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCCCcc-ccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCcee
Q 040462 276 IKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFV-YSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKF 354 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~ 354 (726)
....+..++..+.++|++||+||||+|...... +...|++|+|||++.+
T Consensus 138 ~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 187 (279)
T 3f7m_A 138 YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN------------------------------ 187 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------------------------
T ss_pred ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC------------------------------
Confidence 456778888899999999999999999875443 6788999999997644
Q ss_pred eEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhH
Q 040462 355 PLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENF 434 (726)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~ 434 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccce
Q 040462 435 NSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKY 514 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 514 (726)
+.++.||++||.. ||+|||++|+++++.+ .|
T Consensus 188 ----------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~~~~-------------~~ 218 (279)
T 3f7m_A 188 ----------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTWIGG-------------RT 218 (279)
T ss_dssp ----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECGGG-------------CE
T ss_pred ----------------------------CCCCCCCCCCCCC--------eEEECCCCeEeecCCC-------------CE
Confidence 4568899999965 9999999999998754 68
Q ss_pred eecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 040462 515 SIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPM 557 (726)
Q Consensus 515 ~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i 557 (726)
..++|||||||||||++|||+|++|. ++++||++|++||++.
T Consensus 219 ~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~ 260 (279)
T 3f7m_A 219 NTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKN 260 (279)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEES
T ss_pred EEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccc
Confidence 99999999999999999999999999 9999999999999874
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=409.48 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=189.5
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTAS 203 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAg 203 (726)
..|..+.+|+||+|+|||||||++||+|.++-. +. +.++..+. ....| ...+.|..||||||||
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~------~~-----~~~~v~~~---dg~~f--~~~~~D~~GHGThVAG 80 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-----DFENVPEE---DGTRF--HRQASKCDSHGTHLAG 80 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTEE------EE-----EEECCCCC---C---------CTTTTHHHHHHHH
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHccccc------cc-----CcccccCC---CCccc--cCCCCCCCChHHHHHH
Confidence 378888999999999999999999999986510 00 00000000 00000 1345788999999999
Q ss_pred ccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC------CCeEEEeccCCCCCCCcc
Q 040462 204 TAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD------GVDIITVSLGGNIPVDFI 276 (726)
Q Consensus 204 iaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~------gvdVIn~S~G~~~~~~~~ 276 (726)
||+|+. .||||+|+|+.+|+++..| ++.+++++||+|++++ +++|||||||+. .
T Consensus 81 IIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~-----~ 141 (546)
T 2qtw_B 81 VVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG-----Y 141 (546)
T ss_dssp HHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE-----C
T ss_pred HHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC-----C
Confidence 999873 7899999999999998877 7889999999999984 999999999975 2
Q ss_pred ccHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 277 KDAIAIGAFHAMEKGILTLNSAGNSGSNLG-FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 277 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
...+..++.++.++|++||+||||+|.+.. .+++..|++|+|||++.+....
T Consensus 142 s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a--------------------------- 194 (546)
T 2qtw_B 142 SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV--------------------------- 194 (546)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBC---------------------------
T ss_pred cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCcc---------------------------
Confidence 467777888999999999999999998653 3477899999999986552100
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 195 -------------------------------------------------------------------------------- 194 (546)
T 2qtw_B 195 -------------------------------------------------------------------------------- 194 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
..-..||++||. |||+|||++|+++++... ..|.
T Consensus 195 ---------------------------~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~-----------~~y~ 228 (546)
T 2qtw_B 195 ---------------------------TLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS-----------TCFV 228 (546)
T ss_dssp ---------------------------EETTEECCBSTT--------CCEEEECSSEEEECTTST-----------TCEE
T ss_pred ---------------------------cccCCcCCCCCc--------ceEEecCccEEeeccCCC-----------CcEe
Confidence 001238999984 599999999999987541 3699
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWP 556 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~ 556 (726)
.++|||||||||||++|||+|++|+|+|+|||++|++||.+
T Consensus 229 ~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~ 269 (546)
T 2qtw_B 229 SQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 269 (546)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEE
T ss_pred eeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999964
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=408.94 Aligned_cols=286 Identities=19% Similarity=0.236 Sum_probs=197.9
Q ss_pred hhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCC-CcccCCceeeeeeecCCCCCCCCCCCCcchhh
Q 040462 124 SITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGG-KNFTCNNKLIGARYYTTDGTARDKDGHGTHTA 202 (726)
Q Consensus 124 ~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g-~~f~~n~klig~~~~~~~~~~~D~~gHGThVA 202 (726)
.+|+.+++|+||+|||||||||++||||.++ ...+ ++|..+. .+.....|++|||||||
T Consensus 61 ~aw~~g~tG~GV~VaViDtGid~~HpDL~~n------------~~~~~~~~~~~~--------~dp~p~~~~~gHGThVA 120 (600)
T 3hjr_A 61 WAHRTGVLGQGVNVAVVDDGLAIAHPDLADN------------VRPGSKNVVTGS--------DDPTPTDPDTAHGTSVS 120 (600)
T ss_dssp HHHHHTCSCTTCEEEEESSCCCTTCTTTGGG------------BCSCCBCTTTSS--------SCCCCCSTTCCHHHHHH
T ss_pred HHHHcCCCCCCeEEEEEcCCCCCCChhHhhc------------cccCcceeecCC--------CCCCCCCCCCChHHHHH
Confidence 7999999999999999999999999999865 1111 1221111 01123346789999999
Q ss_pred hccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHH-HHHHhCCCeEEEeccCCCCCCCccc---
Q 040462 203 STAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAF-DDAIADGVDIITVSLGGNIPVDFIK--- 277 (726)
Q Consensus 203 giaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~A~~~gvdVIn~S~G~~~~~~~~~--- 277 (726)
|||||.. +- .| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||+|||.........
T Consensus 121 GiIAa~~----n~----~g-~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~~~~~~~ 191 (600)
T 3hjr_A 121 GIIAAVD----NA----IG-TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDPRSANSL 191 (600)
T ss_dssp HHHHCCS----SS----SS-CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSCCCSCSH
T ss_pred HHHhEeC----CC----CC-cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCCccCCcc
Confidence 9999862 11 22 28999999999999998876 6777777766 6788889999999999763222221
Q ss_pred --cHHHHHHHHH--HhCCcEEEEecCCCCCCCC----------------------ccccCCCceEEEeeeccCcceeeEE
Q 040462 278 --DAIAIGAFHA--MEKGILTLNSAGNSGSNLG----------------------FVYSVAPWLMSVAASTTDRLFVDKV 331 (726)
Q Consensus 278 --~~~~~a~~~a--~~~Gi~vV~AAGN~g~~~~----------------------~~~~~~p~vitVgA~~~~~~~~~~~ 331 (726)
..+..++..+ ..+|+++|+||||.+.... ..+...+++|+|||++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~~IsVgA~~~~------- 264 (600)
T 3hjr_A 192 DQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSALNAD------- 264 (600)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSSEEEEEEECTT-------
T ss_pred hhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCcceEEeeecCC-------
Confidence 2222222222 2689999999999764210 011233444555544322
Q ss_pred EeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEE
Q 040462 332 LLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILF 411 (726)
Q Consensus 332 ~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~ 411 (726)
T Consensus 265 -------------------------------------------------------------------------------- 264 (600)
T 3hjr_A 265 -------------------------------------------------------------------------------- 264 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCcc
Q 040462 412 NDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVD 491 (726)
Q Consensus 412 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~ 491 (726)
+.++.||++|+.. +++|||.+
T Consensus 265 ---------------------------------------------------g~~a~yS~~G~~v--------~~~apg~~ 285 (600)
T 3hjr_A 265 ---------------------------------------------------GVRSSYSSVGSNI--------FLSATGGE 285 (600)
T ss_dssp ---------------------------------------------------SSBCTTCCBCTTC--------CEEEECCS
T ss_pred ---------------------------------------------------CCEeecccCCcce--------eeccCCCC
Confidence 5678899999987 89999876
Q ss_pred E-------Eee-cCCCCCC-------------CCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 040462 492 I-------LAA-VSPLAPI-------------STDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAI 550 (726)
Q Consensus 492 I-------~sa-~~~~~~~-------------~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L 550 (726)
+ ... .+..... ...........|..++|||||||||||++|||+|+||+||++|||++|
T Consensus 286 ~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L 365 (600)
T 3hjr_A 286 YGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLL 365 (600)
T ss_dssp CSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred CCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 2 222 1111000 000111223568899999999999999999999999999999999999
Q ss_pred HhccccCCCCCCC-------------------------C---CCCcCCCCccCccccCCCcc
Q 040462 551 MTTAWPMNSSKVN-------------------------D---AEVAFGSGHVNPVKAVNPGL 584 (726)
Q Consensus 551 ~~TA~~i~~~~~~-------------------------~---~~~~~G~G~vn~~~A~~~gl 584 (726)
++||+++.....| + ....||+|+||+.+|++...
T Consensus 366 ~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 366 ARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAA 427 (600)
T ss_dssp HHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHT
T ss_pred HhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhh
Confidence 9999987653211 0 24579999999999987433
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=255.68 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=79.3
Q ss_pred eeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh---CCCeEEEeccCCCCCC--CccccHHHHHHHHHHhCCcEEEEe
Q 040462 223 ARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA---DGVDIITVSLGGNIPV--DFIKDAIAIGAFHAMEKGILTLNS 297 (726)
Q Consensus 223 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~---~gvdVIn~S~G~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~A 297 (726)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||+|||..... ......+..++..|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4899999999999984 256789999999998 7999999999986211 112346677777888999999999
Q ss_pred cCCCCCCC--------CccccCCCceEEEeeeccC
Q 040462 298 AGNSGSNL--------GFVYSVAPWLMSVAASTTD 324 (726)
Q Consensus 298 AGN~g~~~--------~~~~~~~p~vitVgA~~~~ 324 (726)
|||+|... ..+++.+||+++||+++..
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 99999653 3466789999999998754
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=216.31 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=82.3
Q ss_pred eecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEEeccCCCCC---CCccccHHHHHHHHHHhCCcEEEEecC
Q 040462 224 RGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIITVSLGGNIP---VDFIKDAIAIGAFHAMEKGILTLNSAG 299 (726)
Q Consensus 224 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~---~~~~~~~~~~a~~~a~~~Gi~vV~AAG 299 (726)
..+||+++++.|++.+..+++.++++++|+||++ ++++|||+|||.... ...+.+.+..++..|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4478999999999987655778899999999998 899999999998621 112335677778888899999999999
Q ss_pred CCCCCCC-------------ccccCCCceEEEeeeccC
Q 040462 300 NSGSNLG-------------FVYSVAPWLMSVAASTTD 324 (726)
Q Consensus 300 N~g~~~~-------------~~~~~~p~vitVgA~~~~ 324 (726)
|+|...+ .+++.+||+++||+++..
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 9997542 456789999999998754
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.97 E-value=6.3e-10 Score=99.35 Aligned_cols=79 Identities=8% Similarity=0.059 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceec
Q 040462 30 DDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQ 109 (726)
Q Consensus 30 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 109 (726)
..++.|||+|++... ......|++|+.+.+.+ ...+.+++|+|++.|+||+++|+++++++|+++|+|.+|+||+.++
T Consensus 35 ~ip~~YIV~lk~~~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~ 112 (114)
T 2w2n_P 35 RLPGTYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 112 (114)
T ss_dssp EEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCCCcEEEEECCCCC-HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEe
Confidence 357899999998765 34455778888776654 3356799999999999999999999999999999999999999876
Q ss_pred c
Q 040462 110 F 110 (726)
Q Consensus 110 ~ 110 (726)
.
T Consensus 113 ~ 113 (114)
T 2w2n_P 113 A 113 (114)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=122.83 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=63.2
Q ss_pred ecccCceEEEEEeeCCCCCCHHHHHHHHHHHH--hCCCeEEEeccCCCCC--CCccccHHHHHHHHHHhCCcEEEEecCC
Q 040462 225 GGVPSARIAAYKVCNPSGCASTDILAAFDDAI--ADGVDIITVSLGGNIP--VDFIKDAIAIGAFHAMEKGILTLNSAGN 300 (726)
Q Consensus 225 GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~--~~gvdVIn~S~G~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 300 (726)
++++...++.|...+. ....+.++..+++.. .+-++|||+|||.... ...+.+.+...+..+..+||.|++|+||
T Consensus 263 a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD 341 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 341 (544)
T ss_dssp HHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 3445555555533211 112233444444433 2468999999998721 1122345566666888999999999999
Q ss_pred CCCCC----------CccccCCCceEEEeeeccC
Q 040462 301 SGSNL----------GFVYSVAPWLMSVAASTTD 324 (726)
Q Consensus 301 ~g~~~----------~~~~~~~p~vitVgA~~~~ 324 (726)
+|... ..+++..|||++||+++..
T Consensus 342 ~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l~ 375 (544)
T 3edy_A 342 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQ 375 (544)
T ss_dssp STTBCEEETTEEECCCEETTTCTTSEEEEEEEES
T ss_pred CCccccCCCCCccccCCCcCCCCcEEEEeeeecc
Confidence 99743 2456789999999998753
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-09 Score=87.46 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceec
Q 040462 30 DDRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQ 109 (726)
Q Consensus 30 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 109 (726)
..++.|||.|++.... ...+..+++. .+.++.++|++ |+||+++|+++++++|+++|+|.+|||+..++
T Consensus 6 ~i~~~YIV~~k~~~~~----~~~~~~~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~ 74 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS----CAKKEDVISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYR 74 (80)
T ss_dssp --CCEEEEEECTTCCS----HHHHHHHHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEE
T ss_pred cCCCCEEEEECCCCCh----HHHHHHHHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEE
Confidence 4578999999987652 2223333322 24689999998 99999999999999999999999999999999
Q ss_pred cccCC
Q 040462 110 FHTTR 114 (726)
Q Consensus 110 ~~~~~ 114 (726)
++++.
T Consensus 75 ~~tt~ 79 (80)
T 3cnq_P 75 ALSAT 79 (80)
T ss_dssp ECCC-
T ss_pred Eeeec
Confidence 88764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-08 Score=89.79 Aligned_cols=78 Identities=8% Similarity=0.061 Sum_probs=59.9
Q ss_pred CCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceecc
Q 040462 31 DRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQF 110 (726)
Q Consensus 31 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~ 110 (726)
.++.|||.|++... ......|.+++.+.+.. ...+.++.|+|++.|+||+++|++++++.|+++|+|.+|+++..++.
T Consensus 46 Ip~~YIV~~K~~~~-~~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 46 LPGTYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp EEEEEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCC-HHHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 47899999998765 23333444444332221 22356899999999999999999999999999999999999988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-07 Score=74.86 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=54.3
Q ss_pred cEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEee-cceeeEEEEEeCHHHHHHHHcC--CCeEEEEeCceec
Q 040462 33 KVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSY-RRSFNGFAAKLTDLERQKLASM--EEVVSVFPSRTLQ 109 (726)
Q Consensus 33 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y-~~~~~g~s~~l~~~~~~~L~~~--p~V~~v~~~~~~~ 109 (726)
+.|||.|++... ......+..++ +.. +.++.+.| ...|+||++++++++++.|+++ |.|.+||+|..++
T Consensus 3 ~sYIV~lk~~~~-~~~~~~~~~~~-~~~------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~ 74 (76)
T 1v5i_B 3 GKFIVIFKNDVS-EDKIRETKDEV-IAE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAH 74 (76)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHH-HHH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEE
T ss_pred ceEEEEECCCCC-HHHHHHHHHHH-Hhh------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEe
Confidence 689999998754 23333344333 322 24789999 4899999999999999999999 8999999999876
Q ss_pred c
Q 040462 110 F 110 (726)
Q Consensus 110 ~ 110 (726)
.
T Consensus 75 ~ 75 (76)
T 1v5i_B 75 A 75 (76)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00045 Score=66.78 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCC-------ccceEEEEEe------cchhHHHHhcCceEEEEEecCCC-Cc------eeeeeeeEEEe
Q 040462 370 SSQACNPGCINSSL-------VKGKIVMCSK------FDGYTEVHKVGAAGSILFNDQYE-KV------SFVVSLPAVAV 429 (726)
Q Consensus 370 ~~~~c~~~~~~~~~-------~~gkiv~~~~------~~~~~~~~~~Ga~g~i~~~~~~~-~~------~~~~~~p~~~i 429 (726)
....|.+....... .+|||+|++| .+|..+++++||.++|++|+... .. .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 45789876543222 4789999998 36889999999999999997521 11 11246999999
Q ss_pred ehhhHHHHHHHHhcCCCCeEEE
Q 040462 430 SMENFNSLISYKNSTKKPEAEI 451 (726)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~~i 451 (726)
+..+|+.|++.+..+...+++|
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti 183 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVI 183 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999998888888
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0006 Score=53.89 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=49.5
Q ss_pred cEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceec
Q 040462 33 KVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQ 109 (726)
Q Consensus 33 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 109 (726)
.+|||.+++.... . + .....+.++.+.| ..+++++++||++.++.|+++|+|++|++|...+
T Consensus 2 ~~~IV~f~~~~~~-~----------~---~i~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKFN-P----------H---EVLGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGCC-G----------G---GGGGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcchh-H----------H---HHHHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 4799999874220 0 0 1233467999999 7899999999999999999999999999998765
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.3 Score=53.64 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCCccceEEEEEecc--------------h----hHHHHhcCceEEEEEecCCCCc--------e---eeeeeeEEEeeh
Q 040462 381 SSLVKGKIVMCSKFD--------------G----YTEVHKVGAAGSILFNDQYEKV--------S---FVVSLPAVAVSM 431 (726)
Q Consensus 381 ~~~~~gkiv~~~~~~--------------~----~~~~~~~Ga~g~i~~~~~~~~~--------~---~~~~~p~~~i~~ 431 (726)
+.+++|||||+++.. | ..++.++||+|+|++++..... . ....+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 468999999998721 1 2468899999999998643210 0 124689999999
Q ss_pred hhHHHHHHHHhcCCCCeEEE
Q 040462 432 ENFNSLISYKNSTKKPEAEI 451 (726)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~i 451 (726)
++++.|+..+..+...++++
T Consensus 204 ~da~~L~~~l~~g~~~~v~l 223 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISL 223 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 99999999998876666666
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.4 Score=52.16 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=50.0
Q ss_pred CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce------eeeeeeEEEeehhhHHHHHHHHh
Q 040462 382 SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS------FVVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 382 ~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
.+++||||++.+ ..|..++.++||.|+|++++...... ....+|.+.|+.++++.|+..+.
T Consensus 111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 479999999986 56889999999999999998642211 12468999999999999999984
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.30 E-value=0.32 Score=59.59 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=23.0
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCC
Q 040462 129 HSVESNIIIGVIDSGIWPESESFSD 153 (726)
Q Consensus 129 ~~~G~gV~VgVIDtGid~~Hp~f~~ 153 (726)
.+.|+||+|||+|||||+.+|-|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5899999999999999999999963
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=82.70 E-value=0.98 Score=51.72 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=48.3
Q ss_pred CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCC-c-----------------ee------------------
Q 040462 382 SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEK-V-----------------SF------------------ 420 (726)
Q Consensus 382 ~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~-~-----------------~~------------------ 420 (726)
.+++|||||+.+ ..|..++.++||+|+|++++.... . +.
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 479999999987 568899999999999999875321 0 00
Q ss_pred -eeeeeEEEeehhhHHHHHHHHh
Q 040462 421 -VVSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 421 -~~~~p~~~i~~~~~~~l~~~~~ 442 (726)
.-.||++.|+.++++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 1258999999999999998765
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=82.17 E-value=1.1 Score=51.89 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=49.7
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCC-------------------------------Cce-----
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYE-------------------------------KVS----- 419 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~-------------------------------~~~----- 419 (726)
..+++|||||+.+ .+|..+++++||+|+|++++... +.+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 3479999999997 67899999999999999986320 000
Q ss_pred ---------------eeeeeeEEEeehhhHHHHHHHHhc
Q 040462 420 ---------------FVVSLPAVAVSMENFNSLISYKNS 443 (726)
Q Consensus 420 ---------------~~~~~p~~~i~~~~~~~l~~~~~~ 443 (726)
..-.||++-|+..+++.|+..++.
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 013689999999999999998764
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=80.88 E-value=1 Score=49.19 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=26.4
Q ss_pred CCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCC
Q 040462 461 DAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPL 499 (726)
Q Consensus 461 ~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 499 (726)
....++.||++||.. ||+|||++|+++++.+
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 346789999999866 9999999999998743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 726 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 4e-17 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-14 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 4e-13 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 8e-13 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-09 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-05 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-10 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 6e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 5e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 6e-05 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 4e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 7e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 151 bits (382), Expect = 2e-40
Identities = 93/457 (20%), Positives = 156/457 (34%), Gaps = 62/457 (13%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
N I +IDSG G N +
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGTG---------NWYQPG 60
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
+ + HGTH A T A + GV +A I KV N +G + L A
Sbjct: 61 NNNAHGTHVAGTIAAI-ANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLVAA 113
Query: 253 DDAIADG--VDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYS 310
D + +++T+SLGG+ ++A+ + + L + +AGN+G + +
Sbjct: 114 IDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGV----LLIAAAGNAGDSSYSYPA 169
Query: 311 VAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFS 370
+MSVAA ++ + +SG +
Sbjct: 170 SYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEA-----------ILSTVTVGEGRLAD 218
Query: 371 SQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430
++ +V + S A G++ V +
Sbjct: 219 ITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALA-------ECTVNGTSFSCGN 271
Query: 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDA-PVVAPFSSRGPNAILPDIL--KPDISA 487
M N L+ + EI T+A K A ++ +S P P ++ DI+
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 488 PGVDILA----AVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSP 543
P V + A+ ST ++ Y +GTSMA PH + VA V S+HP+ S
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 544 SAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
S +R+A+ TA ++ + ++ G G +N V A
Sbjct: 392 SQVRAALNATADDLSVAGRDN---QTGYGMINAVAAK 425
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 83.2 bits (204), Expect = 4e-17
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 483 PDISAPGVDILAAVSPLAPISTDPEDKRRV-----KYSIESGTSMACPHAAAVAAYVKSF 537
+ APGV IL+ V I + ++ Y GTSMA PH V A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 538 HPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGL 584
P+ P IR + TA+ N + + G G V A+ L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNGWDH---DTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 53.1 bits (126), Expect = 1e-07
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 39/200 (19%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+NII+ V+D+G+ +G G + +L +
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDEELPA------GTDSS 195
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTD----- 247
GTH A T A + G P A+I + + +
Sbjct: 196 YGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGD 246
Query: 248 --ILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305
+ A A G ++ S GG +K+A +AME G++ + SAGN+ S+
Sbjct: 247 DYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAF----DYAMEHGVVMVVSAGNNTSDS 302
Query: 306 GFVY-SVAPWLMSVAASTTD 324
Y + P ++ VAA
Sbjct: 303 HHQYPAGYPGVIQVAALDYY 322
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 71.5 bits (174), Expect = 3e-14
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 488 PGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIR 547
G+DI+A P Y+ +GTSMA PH A AA VK +P WS IR
Sbjct: 188 AGLDIVA------PGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 548 SAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
+ + TA + S+ + +GSG VN A
Sbjct: 242 NHLKNTATSLGSTNL------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 40/218 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S + + V+D+GI + + G GA + + + +
Sbjct: 24 SGVKVAVLDTGISTHPD-LNIRG-------------------------GASFVPGEPSTQ 57
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D +GHGTH A T A G PSA + A KV SG S I
Sbjct: 58 DGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQG 108
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
+ A +G+ + +SLG P ++ A+ A +G+L + ++GNSG+ +
Sbjct: 109 LEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSISYPAR 164
Query: 312 APWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAM 349
M+V A+ + G G + +N +
Sbjct: 165 YANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQST 202
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 68.1 bits (165), Expect = 4e-13
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FSS G + ++ APG Y+ +GTSMA
Sbjct: 185 RASFSSVGA--------ELEVMAPGAG-------------VYSTYPTNTYATLNGTSMAS 223
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
PH A AA + S HP+ S S +R+ + +TA + SS +G G +N A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFY------YGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 35/193 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+N+ + V+D+GI + GG +F G A
Sbjct: 24 ANVKVAVLDTGIQASHPDLNV--------------VGGASF-------------VAGEAY 56
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
+ DG+G T G PS + A KV N SG S I++
Sbjct: 57 NTDGNGHGTHVA-------GTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
+ A +G+D+I +SLGG +K A+ + NS + +N +
Sbjct: 110 IEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAK 169
Query: 312 APWLMSVAASTTD 324
+++V A ++
Sbjct: 170 YDSVIAVGAVDSN 182
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 67.2 bits (163), Expect = 8e-13
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMAC 524
A FSS GP + D+ APGV ST P +K Y +GTSMA
Sbjct: 186 RASFSSVGP--------ELDVMAPGVS---------IQSTLPGNK----YGAYNGTSMAS 224
Query: 525 PHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAV 580
PH A AA + S HP+W+ + +RS++ T + S +G G +N A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFY------YGKGLINVQAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 57.6 bits (138), Expect = 1e-09
Identities = 42/191 (21%), Positives = 63/191 (32%), Gaps = 34/191 (17%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
SN+ + VIDSGI GG + + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV--------------AGGASMVPSE----------TNPFQ 59
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D + HGTH A T G PSA + A KV G I+
Sbjct: 60 DNNSHGTHVAGT---------VAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIING 110
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
+ AIA+ +D+I +SLGG +K A+ + N + S+
Sbjct: 111 IEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGK 170
Query: 312 APWLMSVAAST 322
P +++V A
Sbjct: 171 YPSVIAVGAVD 181
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 496 VSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555
+ AP S+ Y+ SGTSMA PH + +AA + + +P S + +RS + A
Sbjct: 225 IEISAPGSSVYSTWYNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK 284
Query: 556 PMNSSKVNDAEV----AFGSGHVN 575
++ A + A G G
Sbjct: 285 SVDIKGGYGAAIGDDYASGFGFAR 308
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 481 LKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPD 540
+KPD+ APG IL+A + KY+ GTSMA P A A ++
Sbjct: 216 IKPDVMAPGTFILSAR-SSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 541 -----WSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581
PS +++A++ A + N G G V K++N
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYPNG---NQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 26/156 (16%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I+ V D+G+ S + K+ A
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM------------------HEAFRGKITALYALGRTNNAN 63
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
D +GHGTH A + G + G +++ F
Sbjct: 64 DTNGHGTHVAGS--------VLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLF 115
Query: 253 DDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM 288
A + G I T S G + + D+ + +
Sbjct: 116 SQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRK 151
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 59.6 bits (143), Expect = 3e-10
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 36/191 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I VID+G+ + G + D
Sbjct: 31 SGQEIAVIDTGVDYTHPDLD-----------------------GKVIKGYDFVDNDYDPM 67
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
D + HGTH A AA G+ RI A + + +G + DI A
Sbjct: 68 DLNNHGTHVAGIAAAETNNATGIAGMAPN--------TRILAVRALDRNGSGTLSDIADA 119
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
A G ++I +SLG + +++A+ +A KG + + +AGN+GS+ F +
Sbjct: 120 IIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNKGSVVVAAAGNNGSSTTFEPAS 175
Query: 312 APWLMSVAAST 322
+++V A
Sbjct: 176 YENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 52.3 bits (124), Expect = 6e-08
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 496 VSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAW 555
V +AP +Y+ SGTSMA PH A +AA + S + IR AI TA
Sbjct: 201 VDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTA- 257
Query: 556 PMNSSKVNDAEVAFGSGHVNPVKAVN 581
K++ F G +N AV
Sbjct: 258 ----DKISGTGTYFKYGRINSYNAVT 279
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 5e-10
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 518 SGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVA--------F 569
+GTS + P AA + A + + + ++ ++ T+ P + + + A +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 570 GSGHVNPVKAVN 581
G G ++ V
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 514 YSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVA----- 568
+ GTS A P AA V + +P+ + ++ + +A + + D +
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 569 ----FGSGHVNPVKAVN 581
+G G ++ K +
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 518 SGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVN 575
SGTSMA PH A +AAY+ + + SA R I TA N +++ G VN
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA---NKGDLSN----IPFGTVN 270
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 500 APISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNS 559
AP S+ Y+ SGTSMA PH A VA + S S S IR+AI TA
Sbjct: 204 APGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTA----- 256
Query: 560 SKVNDAEVAFGSGHVNPVKAV 580
K++ + G VN KAV
Sbjct: 257 DKISGTGTYWAKGRVNAYKAV 277
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 36/193 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
S I ++D+G+ + + G + D T +
Sbjct: 30 SGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFVDNDSTPQ 66
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAST-DILAA 251
+ +GHGTH A AA G P A I A +V + SG + +
Sbjct: 67 NGNGHGTHCAGIAA--------AVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANG 118
Query: 252 FDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSV 311
A G +I++SLGG + ++ A+ +A KG + + +AGN+G+ +
Sbjct: 119 ITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAY 174
Query: 312 APWLMSVAASTTD 324
++VA++ +
Sbjct: 175 YSNAIAVASTDQN 187
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 29/172 (16%), Positives = 42/172 (24%), Gaps = 31/172 (18%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
I +I G + S +
Sbjct: 24 QGQCIAIIALGGGYDETSL------------------------AQYFASLGVSAPQVVSV 59
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAF 252
DG G + + V A P A+IA Y N I A
Sbjct: 60 SVDGATNQPTGDPNGPDGEVELDIEVAGALA----PGAKIAVYFAPNTDAGFLNAITTAV 115
Query: 253 DDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAM--EKGILTLNSAGNSG 302
D I+++S GG A+ G+ L +AG+SG
Sbjct: 116 HDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSG 166
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 43.4 bits (101), Expect = 7e-05
Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 33/221 (14%)
Query: 133 SNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTAR 192
+N +G+I G ++ + + NG + G+
Sbjct: 25 ANTTVGIITIGGVSQTLQDLQQFT---------SANGLASVNTQTIQTGS---------- 65
Query: 193 DKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCAS-TDILAA 251
+ + + + G A + T + A
Sbjct: 66 SNGDYSDDQQGQGEWD---------LDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQA 116
Query: 252 FDDAIAD-GVDIITVSLGG---NIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF 307
F+ A++D +I VSLG + D A A +G S+G+ G
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
Query: 308 VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFA 348
+ V V T S + ++
Sbjct: 177 NRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNET 217
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.69 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.46 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 93.39 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 91.64 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 82.92 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=8.1e-53 Score=489.50 Aligned_cols=362 Identities=25% Similarity=0.298 Sum_probs=269.1
Q ss_pred CCcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHH----HH--HcCCCeEEEEe
Q 040462 31 DRKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQ----KL--ASMEEVVSVFP 104 (726)
Q Consensus 31 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~----~L--~~~p~V~~v~~ 104 (726)
.+++|||++++... .+.+++.+. .++++.+ ..++.+.++++...++ .+ ..+|+|++|+|
T Consensus 30 ~~~~~iV~~k~~~~--------~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep 94 (671)
T d1r6va_ 30 TEGKILVGYNDRSE--------VDKIVKAVN------GKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEP 94 (671)
T ss_dssp CTTEEEEEESSHHH--------HHHHHHHHT------CEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEEC
T ss_pred CCCeEEEEECCccC--------HHHHHHhcC------CEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECc
Confidence 47899999986432 334444442 4566666 4567777787653322 22 35799999999
Q ss_pred Cceecccc------------------------------CCCccc--cccchhhccCCCCCCCcEEEEEcccCCCCCCCCC
Q 040462 105 SRTLQFHT------------------------------TRSWDF--MGLNQSITRKHSVESNIIIGVIDSGIWPESESFS 152 (726)
Q Consensus 105 ~~~~~~~~------------------------------~~s~~~--~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~ 152 (726)
+...++.. ..+|.+ +++++.+|+ ..+|+||+|||||||||++||+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~-~~tG~gV~VaViDtGvd~~Hpdl~ 173 (671)
T d1r6va_ 95 SYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWE-EASGTNIIVAVVDTGVDGTHPDLE 173 (671)
T ss_dssp CBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHH-HCSCTTCEEEEEESCCBTTSGGGT
T ss_pred ceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHh-cCCCCCCEEEEEcCCcCCCChhhc
Confidence 86544311 012333 333423455 579999999999999999999998
Q ss_pred CCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceE
Q 040462 153 DEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARI 232 (726)
Q Consensus 153 ~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l 232 (726)
++ ...++++..++.. ....++.|..||||||||||+|+.. ..| +.||||+|+|
T Consensus 174 ~~------------~~~~~~~~~~~~~------~~~~~~~d~~gHGT~VAGiiaa~~~--------~~g-~~GvAp~a~l 226 (671)
T d1r6va_ 174 GQ------------VIAGYRPAFDEEL------PAGTDSSYGGSAGTHVAGTIAAKKD--------GKG-IVGVAPGAKI 226 (671)
T ss_dssp TT------------BCCEEEGGGTEEE------CTTCBCCTTCSHHHHHHHHHHCCCS--------SSS-CCCSCTTSEE
T ss_pred CC------------cccCccccccCCC------CCCCcCcccCCCCccccceeeeecc--------ccc-eeeecCcceE
Confidence 65 2223333222211 1234566788999999999999742 112 3899999999
Q ss_pred EEEEeeCC------CC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 040462 233 AAYKVCNP------SG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNL 305 (726)
Q Consensus 233 ~~~kv~~~------~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 305 (726)
+++|++++ .+ ...+++++||+||+++|++|||||||+.. ....+..++..|.++|+++|+||||++.+.
T Consensus 227 ~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~ 302 (671)
T d1r6va_ 227 MPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDS 302 (671)
T ss_dssp EEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSC
T ss_pred EEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc----CChHHHHHHHHHHhccCcEEEEEecCCCCc
Confidence 99999975 23 67788999999999999999999999862 335666777799999999999999998764
Q ss_pred -CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCc
Q 040462 306 -GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLV 384 (726)
Q Consensus 306 -~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 384 (726)
..+++..|++|+|||++.+..
T Consensus 303 ~~~~Pa~~~~vi~Vga~~~~~~---------------------------------------------------------- 324 (671)
T d1r6va_ 303 HHQYPAGYPGVIQVAALDYYGG---------------------------------------------------------- 324 (671)
T ss_dssp CCCBTTTSTTCEEEEEEEEETT----------------------------------------------------------
T ss_pred cccCCccCCceEEEEEecCCCC----------------------------------------------------------
Confidence 456788999999999864410
Q ss_pred cceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCc
Q 040462 385 KGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPV 464 (726)
Q Consensus 385 ~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 464 (726)
...
T Consensus 325 -----------------------------------------------------------------------------~~~ 327 (671)
T d1r6va_ 325 -----------------------------------------------------------------------------TFR 327 (671)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------cce
Confidence 035
Q ss_pred ccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCC-----CCCccccceeecccccchhHHHHHHHHHHHhhCC
Q 040462 465 VAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTD-----PEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHP 539 (726)
Q Consensus 465 ~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P 539 (726)
++.||+|||.. ||+|||++|+++++........ ........|..++|||||||||||++|||+|++|
T Consensus 328 ~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p 399 (671)
T d1r6va_ 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP 399 (671)
T ss_dssp ECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCT
T ss_pred eeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCC
Confidence 68999999986 9999999999998754322111 1112346799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCCCccc
Q 040462 540 DWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLI 585 (726)
Q Consensus 540 ~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~glv 585 (726)
+|+++|||++|++||+++... ..+..||||+||+.+|++..+.
T Consensus 400 ~lt~~~v~~~L~~tA~~~~~~---g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 400 NAKPWQIRKLLENTAFDFNGN---GWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp TCCHHHHHHHHHHHCBCSSSS---SCBTTTBTCBCCHHHHHHCCCC
T ss_pred CCCHHHHHHHHHhhCccCCCC---CCCCCcccChhCHHHHhhCcCC
Confidence 999999999999999987653 3678899999999999985443
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.1e-49 Score=414.39 Aligned_cols=261 Identities=30% Similarity=0.357 Sum_probs=213.6
Q ss_pred ccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeec-CCCCCCCCCCC
Q 040462 118 FMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY-TTDGTARDKDG 196 (726)
Q Consensus 118 ~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~-~~~~~~~D~~g 196 (726)
.++++ .+|+++.+|+||+|||||||||++||+|.++ ++..++| .....+.|..+
T Consensus 17 ~i~~~-~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~------------------------~~~~~~~~~~~~~~~d~~~ 71 (280)
T d1dbia_ 17 NTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDNDYDPMDLNN 71 (280)
T ss_dssp GGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTTBSCCCCSSS
T ss_pred hCCHH-HHHhccCCCCCeEEEEEccCcCCCChhhcCC------------------------eeecccccCCCCccccccc
Confidence 35555 8999999999999999999999999999864 1222222 22456778999
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCc
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDF 275 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~ 275 (726)
|||||||+|++.... .+.+.||||+|+|+.+|+++..+ +...++++||+|++++|++|||+|||....
T Consensus 72 HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~~--- 140 (280)
T d1dbia_ 72 HGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH--- 140 (280)
T ss_dssp HHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCC---
T ss_pred cccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeecccccccc---
Confidence 999999999987432 23348999999999999998776 889999999999999999999999998732
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 276 IKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
.+....+...+.++|+++|+||||+|......+...|++|+|||.+.+
T Consensus 141 -~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 188 (280)
T d1dbia_ 141 -TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------------------------- 188 (280)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------------------------
T ss_pred -chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC-------------------------------
Confidence 234455666888999999999999998877888899999999997544
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
+.++.||++||.. |++|||++|++..... .|.
T Consensus 189 ---------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~~~-------------~~~ 220 (280)
T d1dbia_ 189 ---------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITGN-------------RYA 220 (280)
T ss_dssp ---------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETTT-------------EEE
T ss_pred ---------------------------CCcCCcCCCCCcc--------cccCCccceeccccCc-------------cee
Confidence 4678999999976 9999999999988754 799
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.++|||||||+|||++|||+|. .+++.+||++|++||+++.. .+..||+|+||+++||+
T Consensus 221 ~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 221 YMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp EECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-----BTTTBSSEECCHHHHHT
T ss_pred ccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-----CCCcCCCCeEcHHHHcC
Confidence 9999999999999999999995 55899999999999998765 45779999999999985
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.2e-49 Score=442.47 Aligned_cols=375 Identities=26% Similarity=0.321 Sum_probs=240.8
Q ss_pred ccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCC
Q 040462 118 FMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGH 197 (726)
Q Consensus 118 ~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gH 197 (726)
+++.+ .+|. .+|+||+|||||||||++||+|.++ ...++++..+ .+...+.|++||
T Consensus 10 ~i~a~-~~~~--~~G~gv~VaviDtGid~~Hp~~~~~------------~~~~~~~~~~---------~~~~~~~d~~gH 65 (435)
T d1v6ca_ 10 FVGAT-VLSD--SQAGNRTICIIDSGYDRSHNDLNAN------------NVTGTNNSGT---------GNWYQPGNNNAH 65 (435)
T ss_dssp HTTGG-GSCC--TTGGGCEEEEEESCCCTTSTTTTTS------------EEEECCCTTS---------CCTTCCCSSCCH
T ss_pred hcCcc-hhhh--cCCCCcEEEEEcCCCCCCChhhccC------------eeeeeccCCC---------CCCCCCCCCCCc
Confidence 34554 5665 5899999999999999999999865 1112222111 123467789999
Q ss_pred cchhhhccccCcCCCCccccccCcceeeccc--CceEEEEEeeCCCC-CCHHHHHHHHHHHHh-CCCeEEEeccCCCCCC
Q 040462 198 GTHTASTAAGNEVKDASFYGVGQGTARGGVP--SARIAAYKVCNPSG-CASTDILAAFDDAIA-DGVDIITVSLGGNIPV 273 (726)
Q Consensus 198 GThVAgiaag~~~~~~~~~G~~~G~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~~ 273 (726)
||||||||||+... .| +.|||| +++|+.+|+++... +...++++||+++++ +|++|||+|||....
T Consensus 66 GThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~~- 135 (435)
T d1v6ca_ 66 GTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS- 135 (435)
T ss_dssp HHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC-
T ss_pred HHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCCC-
Confidence 99999999997421 12 389999 89999999998765 677789999999996 599999999998732
Q ss_pred CccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceE--eeeeeccCCCCC
Q 040462 274 DFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATL--SGYSINSFAMKG 351 (726)
Q Consensus 274 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~--~g~~~~~~~~~~ 351 (726)
...+..++..+.++|+++|+||||+|....++++..+++|+||+++.++....+...+....+ +|..+.+....+
T Consensus 136 ---~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g 212 (435)
T d1v6ca_ 136 ---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVG 212 (435)
T ss_dssp ---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTT
T ss_pred ---CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecC
Confidence 345556677889999999999999999988999999999999999876543322222221111 111111100000
Q ss_pred c-eee-EEecCCCCCC--C---CcCCCCCCC--------------------CCCCCCCCccceEEEEEe----------c
Q 040462 352 K-KFP-LVHGKEVSES--C---PEFSSQACN--------------------PGCINSSLVKGKIVMCSK----------F 394 (726)
Q Consensus 352 ~-~~~-l~~~~~~~~~--~---~~~~~~~c~--------------------~~~~~~~~~~gkiv~~~~----------~ 394 (726)
. .+. .......... . .......|. ...+...++.+++.++.+ .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (435)
T d1v6ca_ 213 EGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEI 292 (435)
T ss_dssp CEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHH
T ss_pred CCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCccccceee
Confidence 0 000 0000000000 0 000000000 011122334445554443 1
Q ss_pred chhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCC
Q 040462 395 DGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPN 474 (726)
Q Consensus 395 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~ 474 (726)
.........++.+++. .+++.+|.
T Consensus 293 ~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~~~~~ 316 (435)
T d1v6ca_ 293 NSTKACKTAGAKGIIV--------------------------------------------------------YSNSALPG 316 (435)
T ss_dssp HHHHHHHHTTCSEEEE--------------------------------------------------------ECCSSSCS
T ss_pred eeceeecccCCcceEE--------------------------------------------------------eccCCCCC
Confidence 1122333333333333 23333443
Q ss_pred CCC--CCCcCCceEeCCccEEeecCCCCC----CCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 040462 475 AIL--PDILKPDISAPGVDILAAVSPLAP----ISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRS 548 (726)
Q Consensus 475 ~~~--~~~lKPDI~APG~~I~sa~~~~~~----~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~ 548 (726)
... ....||||.+||..|.++...... ............|..+||||||||||||++|||+|+||+|+++|||+
T Consensus 317 ~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~ 396 (435)
T d1v6ca_ 317 LQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRA 396 (435)
T ss_dssp CCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred cCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 321 245799999999998765421100 00000111235799999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCCCCCCcCCCCccCccccCCCcccccCChhhHHHhhhc
Q 040462 549 AIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVNPGLIYETSKQDYIKILCS 599 (726)
Q Consensus 549 ~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~~glv~d~~~~dy~~~lc~ 599 (726)
+||+||+++.. +..++.||+|+||+.+|+ +||...|.
T Consensus 397 ~L~~TA~~~~~---~~~~~~~G~G~vn~~~A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 397 ALNATADDLSV---AGRDNQTGYGMINAVAAK-----------AYLDESCT 433 (435)
T ss_dssp HHHHHSBCCSS---SSCBTTTBTCBCCHHHHH-----------HHHHHCTT
T ss_pred HHHhhCcccCC---CCCCCCcccceecHHHHH-----------HHHHhcCC
Confidence 99999998854 346789999999999995 48887775
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.1e-48 Score=407.89 Aligned_cols=264 Identities=30% Similarity=0.442 Sum_probs=220.3
Q ss_pred CCc--cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSW--DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~--~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
-+| ++++++ .+|+++++|+||+|||||||||++||+|+.. .+.+| ..+...+
T Consensus 4 ~~wgl~~i~~~-~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~~--------------~~~~~-----------~~~~~~~ 57 (274)
T d1r0re_ 4 VPYGIPLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLNVV--------------GGASF-----------VAGEAYN 57 (274)
T ss_dssp CCTHHHHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--------------EEEEC-----------STTCCTT
T ss_pred CCcchhhcChH-HHHHcCCCCCCeEEEEECCCCCCCChhhccc--------------CCccc-----------cCCCCCC
Confidence 356 557777 8999999999999999999999999999521 11122 1224566
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..+|||||||||++.... .+ ..|+||+|+|+.+|+++..+ +..++++++++++.+++++|+|+|||..
T Consensus 58 ~d~~gHGT~vAgii~~~~~~--------~~-~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~ 128 (274)
T d1r0re_ 58 TDGNGHGTHVAGTVAALDNT--------TG-VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGA 128 (274)
T ss_dssp CCSSSHHHHHHHHHHCCSSS--------SB-CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS
T ss_pred CCcccccccccccccccccc--------cc-ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccccc
Confidence 78899999999999987421 12 38999999999999998877 7889999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCC----ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeecc
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLG----FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~ 346 (726)
.. .........++.++++++|+||||+|.... ..+...+++|+|||.+.+
T Consensus 129 ~~----~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------- 182 (274)
T d1r0re_ 129 SG----STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---------------------- 182 (274)
T ss_dssp SC----CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT----------------------
T ss_pred cc----hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC----------------------
Confidence 22 234455566888999999999999986532 345678899999997644
Q ss_pred CCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeE
Q 040462 347 FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426 (726)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 426 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
+.++.||++||. |||+|||++|+++...+
T Consensus 183 ------------------------------------~~~~~~s~~g~~--------~di~APG~~i~~~~~~~------- 211 (274)
T d1r0re_ 183 ------------------------------------SNRASFSSVGAE--------LEVMAPGAGVYSTYPTN------- 211 (274)
T ss_dssp ------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETTT-------
T ss_pred ------------------------------------CCcccccCCCCC--------EEEEecCCCcccccCCC-------
Confidence 456889999985 49999999999998764
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+.+|++
T Consensus 212 ------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 212 ------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCHHHHTC
T ss_pred ------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCceEcCeecHHHhcC
Confidence 78999999999999999999999999999999999999999998643 5789999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=3.3e-48 Score=405.22 Aligned_cols=260 Identities=29% Similarity=0.387 Sum_probs=222.0
Q ss_pred ccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeec-CCCCCCCCCCC
Q 040462 118 FMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY-TTDGTARDKDG 196 (726)
Q Consensus 118 ~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~-~~~~~~~D~~g 196 (726)
.++++ .+|+.+ +|+||+|+|||||||++||+|.++ ++..++| .++..+.|..+
T Consensus 17 ~i~a~-~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~------------------------~~~~~~~~~~~~~~~d~~~ 70 (279)
T d1thma_ 17 KIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDNDSTPQNGNG 70 (279)
T ss_dssp HTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTTBSCCCCSSS
T ss_pred hCCHH-HHHhcc-CCCCcEEEEEcCCCCCCChhhcCC------------------------eeccccccccCcccccccc
Confidence 45556 899987 999999999999999999999764 2223333 23466788999
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCc
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDF 275 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~ 275 (726)
||||||++|++.... .+.+.||||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|||...
T Consensus 71 HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~---- 138 (279)
T d1thma_ 71 HGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---- 138 (279)
T ss_dssp HHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS----
T ss_pred cccccceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc----
Confidence 999999999997532 22348999999999999998876 88899999999999999999999999872
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceee
Q 040462 276 IKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFP 355 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~ 355 (726)
.......+...+.++|+++|+|+||+|......+...|++++|||++.+
T Consensus 139 ~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------------------------------- 187 (279)
T d1thma_ 139 GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------------- 187 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-------------------------------
Confidence 3344556667888999999999999999888888899999999997644
Q ss_pred EEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHH
Q 040462 356 LVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFN 435 (726)
Q Consensus 356 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 435 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcccccee
Q 040462 436 SLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYS 515 (726)
Q Consensus 436 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 515 (726)
+.++.||++||+. ||.|||.+|+++.+.+ .|.
T Consensus 188 ---------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~-------------~~~ 219 (279)
T d1thma_ 188 ---------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYA 219 (279)
T ss_dssp ---------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETTT-------------EEE
T ss_pred ---------------------------CCCccccCCCceE--------EEeeeeeccccccCcc-------------ccc
Confidence 4578899999987 9999999999998765 799
Q ss_pred ecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 516 IESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 516 ~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.++|||||||||||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||+.+|++
T Consensus 220 ~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 220 SLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp EECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT-----BTTTBSSEECCHHHHHH
T ss_pred ccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC-----CCCcceeeeEcHHHhhC
Confidence 999999999999999999999765 789999999999998754 46789999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.6e-48 Score=407.96 Aligned_cols=262 Identities=31% Similarity=0.428 Sum_probs=218.7
Q ss_pred cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCC
Q 040462 117 DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDG 196 (726)
Q Consensus 117 ~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~g 196 (726)
+.++++ .+|+++++|+||+|+|||||||++||+|+.. .+.+|..+ +.....+..+
T Consensus 9 ~~i~a~-~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~--------------~~~~~~~~----------~~~~~~~~~~ 63 (281)
T d1to2e_ 9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA--------------GGASMVPS----------ETNPFQDNNS 63 (281)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--------------EEEECCTT----------CCCTTCCSSS
T ss_pred HHhCcH-HHHHCCCCCCCeEEEEECCCCCCCChhhhhc--------------CCccccCC----------CCCCCcCcCC
Confidence 345666 8999999999999999999999999999632 11122111 1223334679
Q ss_pred CcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCc
Q 040462 197 HGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGNIPVDF 275 (726)
Q Consensus 197 HGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~ 275 (726)
|||||||||+|.... ....||||+|+|+.+|+++..+ ...+++++||+|+++.+++|+|+|||.. .
T Consensus 64 HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~----~ 130 (281)
T d1to2e_ 64 HGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGP----S 130 (281)
T ss_dssp HHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBS----C
T ss_pred CCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCC----c
Confidence 999999999987421 1138999999999999998876 7888999999999999999999999976 2
Q ss_pred cccHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCC
Q 040462 276 IKDAIAIGAFHAMEKGILTLNSAGNSGSNL----GFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKG 351 (726)
Q Consensus 276 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~ 351 (726)
....+..++..+.++|+++|+||||+|... ...++..+++|+||+.+.+
T Consensus 131 ~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 183 (281)
T d1to2e_ 131 GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------------------------- 183 (281)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------------------------
T ss_pred chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC---------------------------
Confidence 345667777789999999999999998753 2346678999999997644
Q ss_pred ceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeeh
Q 040462 352 KKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSM 431 (726)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 431 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccc
Q 040462 432 ENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRR 511 (726)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 511 (726)
+.++.||++||.. |+.|||++|+++.+.+
T Consensus 184 -------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~~------------ 212 (281)
T d1to2e_ 184 -------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPGN------------ 212 (281)
T ss_dssp -------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETTT------------
T ss_pred -------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCCC------------
Confidence 4568899999977 9999999999998764
Q ss_pred cceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 512 VKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 512 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.+ +..||+|+||+.+|++
T Consensus 213 -~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 213 -KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp -EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTS
T ss_pred -eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCcccHHHHHh
Confidence 78999999999999999999999999999999999999999998754 4679999999999998
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=4.8e-48 Score=401.82 Aligned_cols=263 Identities=31% Similarity=0.432 Sum_probs=222.0
Q ss_pred CCc--cccccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCC
Q 040462 114 RSW--DFMGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTA 191 (726)
Q Consensus 114 ~s~--~~~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~ 191 (726)
.+| +.++++ .+|+.+++|+||+||||||||+ +||+|... .+.+| ..+...+
T Consensus 4 ~~w~l~~i~~~-~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~--------------~~~~~-----------~~~~~~~ 56 (269)
T d1gcia_ 4 VPWGISRVQAP-AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR--------------GGASF-----------VPGEPST 56 (269)
T ss_dssp CCHHHHHTTHH-HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE--------------EEEEC-----------STTCCSC
T ss_pred CCcchhHhCcH-HHHhCCCCCCCeEEEEECCCCC-CCcccCcc--------------ccccc-----------cCCCCCc
Confidence 345 346666 8999999999999999999998 89999532 11111 1224566
Q ss_pred CCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhCCCeEEEeccCCC
Q 040462 192 RDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIADGVDIITVSLGGN 270 (726)
Q Consensus 192 ~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~S~G~~ 270 (726)
.|..+|||||||+|++... .+...|+||+|+|+.+|++...+ .....+.++++++..+++++||+|||..
T Consensus 57 ~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~ 127 (269)
T d1gcia_ 57 QDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSP 127 (269)
T ss_dssp SCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred cccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccccccccccccc
Confidence 7889999999999998742 12237999999999999998876 7788999999999999999999999987
Q ss_pred CCCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 271 IPVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 271 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
.. ......+...+.++|+++|+||||+|.+...+++..|++|+||+++.+
T Consensus 128 ~~----~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 177 (269)
T d1gcia_ 128 SP----SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------------------- 177 (269)
T ss_dssp SC----CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------------
T ss_pred cc----cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC--------------------------
Confidence 22 234455666889999999999999998888888999999999997644
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
+.++.||++||.. ||+|||.++.++....
T Consensus 178 --------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~----------- 206 (269)
T d1gcia_ 178 --------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPGS----------- 206 (269)
T ss_dssp --------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT-----------
T ss_pred --------------------------------CCcccccCCCCCc--------eEEEeeecceeccCCC-----------
Confidence 4568899999976 9999999999988754
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+++|++
T Consensus 207 --~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 207 --TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp --EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred --ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCeEcHHHhcC
Confidence 79999999999999999999999999999999999999999998754 4679999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.9e-43 Score=372.59 Aligned_cols=285 Identities=29% Similarity=0.324 Sum_probs=215.7
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
++++ .+|..+++|+||+|+|||||||++||+|.++ ...+.+|..... .......|..+||
T Consensus 13 i~~~-~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~------------~~~~~~~~~~~~-------~~~~~~~d~~gHG 72 (309)
T d2ixta1 13 IYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------VEQCKDFTGATT-------PINNSCTDRNGHG 72 (309)
T ss_dssp HHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------EEEEEESSSSSS-------CEETCCCCSSSHH
T ss_pred cCCh-hhhccCCCCCCeEEEEEccCCCCCChhHhcc------------ccccccccCCCC-------CCCCCcccccccc
Confidence 4455 8999999999999999999999999999864 111222211110 0124566789999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC-----CCeEEEeccCCCCC
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD-----GVDIITVSLGGNIP 272 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-----gvdVIn~S~G~~~~ 272 (726)
|||||||+|....+ ...+.||||+|+|+.++++...+ +..++++.+++++++. ...|+|+|++...
T Consensus 73 T~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~- 144 (309)
T d2ixta1 73 THVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA- 144 (309)
T ss_dssp HHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS-
T ss_pred cccccccccccccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccccccccc-
Confidence 99999999874321 22248999999999999998876 7888999999998875 3479999998762
Q ss_pred CCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCC
Q 040462 273 VDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGF--VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMK 350 (726)
Q Consensus 273 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~ 350 (726)
.......++..+.++|+++|+||||++..... .+...+++++|++.+..........
T Consensus 145 ---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~~------------------ 203 (309)
T d2ixta1 145 ---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV------------------ 203 (309)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEEE------------------
T ss_pred ---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccccc------------------
Confidence 23445556668889999999999999876543 4556789999988754321100000
Q ss_pred CceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEee
Q 040462 351 GKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVS 430 (726)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 430 (726)
T Consensus 204 -------------------------------------------------------------------------------- 203 (309)
T d2ixta1 204 -------------------------------------------------------------------------------- 203 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCcc
Q 040462 431 MENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKR 510 (726)
Q Consensus 431 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 510 (726)
........++++|+.. ....||||+|||++|+++....
T Consensus 204 -----------------------------~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~~----------- 241 (309)
T d2ixta1 204 -----------------------------ADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYNG----------- 241 (309)
T ss_dssp -----------------------------CTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTTS-----------
T ss_pred -----------------------------cccccccccccccccc--cCCCcceeecCCCceeeecCCC-----------
Confidence 0012334567777765 5667899999999999997754
Q ss_pred ccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC----CCCCCCcCCCCccCc
Q 040462 511 RVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK----VNDAEVAFGSGHVNP 576 (726)
Q Consensus 511 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~----~~~~~~~~G~G~vn~ 576 (726)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.... ....++.+|+|++|+
T Consensus 242 --~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 242 --GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFARV 309 (309)
T ss_dssp --SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred --cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcCCccCCCcccCCCEecC
Confidence 7999999999999999999999999999999999999999999876542 234678889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=7.5e-43 Score=364.39 Aligned_cols=237 Identities=29% Similarity=0.338 Sum_probs=196.7
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 128 KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 128 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
...+|+||+|+|||||||++||+|.++. ...+.+ +..+.|.+||||||||||+|
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~~------------------------~~~~~~--~~~~~d~~gHGT~VAgiia~ 79 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGRA------------------------QMVKTY--YYSSRDGNGHGTHCAGTVGS 79 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTCE------------------------EEEEES--SSCSSCSSSHHHHHHHHHHC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCCc------------------------eeccCC--CCCcccccCccccccccccc
Confidence 3569999999999999999999998640 111111 23567889999999999998
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHhC-------CCeEEEeccCCCCCCCccccH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIAD-------GVDIITVSLGGNIPVDFIKDA 279 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-------gvdVIn~S~G~~~~~~~~~~~ 279 (726)
+. .|+||+|+|+.+|++.... ...+.+..+++++... +++|+|+|||.. ..+.
T Consensus 80 ~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~-----~~~~ 140 (279)
T d2pwaa1 80 RT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-----YSSS 140 (279)
T ss_dssp TT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----CCHH
T ss_pred cc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-----cccc
Confidence 63 7899999999999998765 7788899999998874 456999999975 3456
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCceeeEEe
Q 040462 280 IAIGAFHAMEKGILTLNSAGNSGSNLGF-VYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKFPLVH 358 (726)
Q Consensus 280 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~~l~~ 358 (726)
+..++..+.++|+++|+||||++.+... .+...|++|+|||++.+
T Consensus 141 ~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~---------------------------------- 186 (279)
T d2pwaa1 141 VNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY---------------------------------- 186 (279)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------------
T ss_pred cchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec----------------------------------
Confidence 6777778899999999999999976544 56788999999997644
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhHHHHH
Q 040462 359 GKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENFNSLI 438 (726)
Q Consensus 359 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~ 438 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCccccceeecc
Q 040462 439 SYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDKRRVKYSIES 518 (726)
Q Consensus 439 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 518 (726)
+.++.||++||.. ||+|||.+|+++++.+ .|..++
T Consensus 187 ------------------------g~~~~~S~~G~~~--------dv~APG~~i~s~~~~~-------------~~~~~s 221 (279)
T d2pwaa1 187 ------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSIS 221 (279)
T ss_dssp ------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETTT-------------EEEEEC
T ss_pred ------------------------CCCccccCCCCcc--------ccccccccccccccCC-------------cccCCC
Confidence 4678999999976 9999999999998765 799999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCc
Q 040462 519 GTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNP 576 (726)
Q Consensus 519 GTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~ 576 (726)
|||||||+|||++|||+|++|.++++++|. |++||++. ....+|+|++|.
T Consensus 222 GTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~-------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 222 GTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG-------DLSNIPFGTVNL 271 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES-------CCBSCCTTSCCE
T ss_pred cchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC-------CCCCCCCCChhh
Confidence 999999999999999999999999888775 77888763 235689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=3.5e-42 Score=365.51 Aligned_cols=302 Identities=26% Similarity=0.304 Sum_probs=230.1
Q ss_pred ccccccchhhccC-CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCC
Q 040462 116 WDFMGLNQSITRK-HSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDK 194 (726)
Q Consensus 116 ~~~~g~~~~~w~~-~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~ 194 (726)
.++++++ .+|.. |++|+||+|||||||||++||+|.... .| +.++...+.+....++.|.
T Consensus 5 ~~~~~~~-~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~------------~~~~~~~~~~~~~~~~~d~ 65 (318)
T d1wmda2 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF------------RGKITALYALGRTNNANDT 65 (318)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT------------TTCEEEEEETTTTTCCCCS
T ss_pred hcccCch-hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc------------CCcEEeecCCCCCCCCCCC
Confidence 3567888 88885 999999999999999999999997541 11 2244444555555677889
Q ss_pred CCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCC---CCHHHHHHHHHHHHhCCCeEEEeccCCCC
Q 040462 195 DGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG---CASTDILAAFDDAIADGVDIITVSLGGNI 271 (726)
Q Consensus 195 ~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~gvdVIn~S~G~~~ 271 (726)
.||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++|+|+|||...
T Consensus 66 ~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~ 134 (318)
T d1wmda2 66 NGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV 134 (318)
T ss_dssp SSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCC
T ss_pred CCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccccccc
Confidence 99999999999997321 28999999999999998765 34556788999999999999999999873
Q ss_pred CCCccccHHHHHHHHHHhCCcEEEEecCCCCCCCCccc--cCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCC
Q 040462 272 PVDFIKDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY--SVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAM 349 (726)
Q Consensus 272 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~ 349 (726)
..........+...+.++++++|+|+||.|.+..... ...++++++.+..........
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------- 194 (318)
T d1wmda2 135 -NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS------------------- 194 (318)
T ss_dssp -TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG-------------------
T ss_pred -ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccccc-------------------
Confidence 3334455566666778999999999999998765543 456788888776533210000
Q ss_pred CCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEe
Q 040462 350 KGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAV 429 (726)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 429 (726)
T Consensus 195 -------------------------------------------------------------------------------- 194 (318)
T d1wmda2 195 -------------------------------------------------------------------------------- 194 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCCCCc
Q 040462 430 SMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDPEDK 509 (726)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 509 (726)
.......+..||++||.. ....|||+.|||.+|+++......... ....
T Consensus 195 ----------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~-~~~~ 243 (318)
T d1wmda2 195 ----------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSS-FWAN 243 (318)
T ss_dssp ----------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGG-SSEE
T ss_pred ----------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCc-cccC
Confidence 001124567899999987 678999999999999998776432211 1112
Q ss_pred cccceeecccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCCCCCCCcCCCCccCccccCC
Q 040462 510 RRVKYSIESGTSMACPHAAAVAAYVKSFH-----PDWSPSAIRSAIMTTAWPMNSSKVNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 510 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~~sp~~Ik~~L~~TA~~i~~~~~~~~~~~~G~G~vn~~~A~~ 581 (726)
....|..++|||||||||||++|||+|++ +.|+|.+||++|++||+++... .++..||||+||+.+||+
T Consensus 244 ~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~---~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 244 HDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG---YPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp EETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC---SSCTTTTTCBCCHHHHHT
T ss_pred CCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCC---CCCCCeeeceecHHHHhC
Confidence 23568889999999999999999999974 4689999999999999987553 356789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-39 Score=347.12 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=194.3
Q ss_pred CCCccc-------cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeec
Q 040462 113 TRSWDF-------MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYY 185 (726)
Q Consensus 113 ~~s~~~-------~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~ 185 (726)
+++|.+ ++++ .+|..+.+|+||+|||||||||++||+|.++ ...+.+|.+++.-. ..
T Consensus 11 ~~qw~l~~~~~~~in~~-~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~------------~~~~~~~~~~~~~~---~~ 74 (334)
T d1p8ja2 11 PQQWYLSGVTQRDLNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGN------------YDPGASFDVNDQDP---DP 74 (334)
T ss_dssp GGCTTTSCTTSCSCCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG------------BCGGGCEETTTTBS---CC
T ss_pred hhcCCCCCCcccCCCHH-HHHhcCCCCCCeEEEEEccCCCCCChhHhhc------------cccCCCccccCCCC---cc
Confidence 356665 3455 8999999999999999999999999999864 12222222111100 00
Q ss_pred CCCCCCCCCCCCcchhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh-CCCeEEE
Q 040462 186 TTDGTARDKDGHGTHTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA-DGVDIIT 264 (726)
Q Consensus 186 ~~~~~~~D~~gHGThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn 264 (726)
.......|..+|||||||||++....+. + ..|+||+++++.+|+... ...+.+.++.++++ ++++++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~---~-----~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n 143 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYS 143 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEE
T ss_pred ccccccccCccchhhhhhhhhhcccccc---c-----cccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEe
Confidence 1123455789999999999999753221 1 289999999999999764 33455567777665 6899999
Q ss_pred eccCCCCCCCcc--------ccHHHHHHHHHHhCCcEEEEecCCCCCCCCccc----cCCCceEEEeeeccCcceeeEEE
Q 040462 265 VSLGGNIPVDFI--------KDAIAIGAFHAMEKGILTLNSAGNSGSNLGFVY----SVAPWLMSVAASTTDRLFVDKVL 332 (726)
Q Consensus 265 ~S~G~~~~~~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVgA~~~~~~~~~~~~ 332 (726)
+|||........ ...+......+..+|+++|+||||++....... ...+.+++|++.+.+
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------- 215 (334)
T d1p8ja2 144 ASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF-------- 215 (334)
T ss_dssp ECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT--------
T ss_pred CCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC--------
Confidence 999976322111 112233344556799999999999876543322 244567777765433
Q ss_pred eCCCceEeeeeeccCCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEe
Q 040462 333 LGNGATLSGYSINSFAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFN 412 (726)
Q Consensus 333 ~g~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~ 412 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceeeeeeeEEEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCc--
Q 040462 413 DQYEKVSFVVSLPAVAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGV-- 490 (726)
Q Consensus 413 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~-- 490 (726)
+..+.||++|+.. ..+..+||.
T Consensus 216 --------------------------------------------------g~~~~~s~~~~~~------~~~~~~~~~~~ 239 (334)
T d1p8ja2 216 --------------------------------------------------GNVPWYSEACSST------LATTYSSGNQN 239 (334)
T ss_dssp --------------------------------------------------SCCCTTCCBCTTC------CEEEECCCSTT
T ss_pred --------------------------------------------------CceeeecccCCcc------ccccccccccc
Confidence 2334555555543 113333332
Q ss_pred ---cEEeecCCCCCCCCCCCCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC------
Q 040462 491 ---DILAAVSPLAPISTDPEDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK------ 561 (726)
Q Consensus 491 ---~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~------ 561 (726)
.+.+... ...|..++|||||||||||++|||+|++|+|+++|||++|++||+++....
T Consensus 240 ~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~ 306 (334)
T d1p8ja2 240 EKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN 306 (334)
T ss_dssp SCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC
T ss_pred cccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccccc
Confidence 2222221 247889999999999999999999999999999999999999998764421
Q ss_pred --CCCCCCcCCCCccCccccCC
Q 040462 562 --VNDAEVAFGSGHVNPVKAVN 581 (726)
Q Consensus 562 --~~~~~~~~G~G~vn~~~A~~ 581 (726)
....+..||+|+||+.+||+
T Consensus 307 ~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 307 GVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp TTSCEEBTTTBTCBCCHHHHHH
T ss_pred CCCcccCCCCcceEeCHHHHHH
Confidence 11245679999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-39 Score=344.90 Aligned_cols=281 Identities=17% Similarity=0.180 Sum_probs=202.6
Q ss_pred cccchhhccCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCc
Q 040462 119 MGLNQSITRKHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHG 198 (726)
Q Consensus 119 ~g~~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHG 198 (726)
+++. .+|..+++|+||+|+|||||||++||+|.++-. . ..+++|..+. .......+..+||
T Consensus 33 in~~-~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~---~~~~~~~~~~--------~~~~~~~~~~~HG 93 (339)
T d2id4a2 33 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------A---EGSWDFNDNT--------NLPKPRLSDDYHG 93 (339)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------G---GGCEETTTTB--------SCCCCCSTTTTHH
T ss_pred cCHH-HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------c---ccccccccCC--------CccCCCccccccc
Confidence 4555 899999999999999999999999999987511 0 1112222111 0123455678999
Q ss_pred chhhhccccCcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHhCCCeEEEeccCCCCCCCcc--
Q 040462 199 THTASTAAGNEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIADGVDIITVSLGGNIPVDFI-- 276 (726)
Q Consensus 199 ThVAgiaag~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~S~G~~~~~~~~-- 276 (726)
||||++|++....+. .+.||||+|+|+.+++... .....++..++.++++. .+|+|+|+|........
T Consensus 94 T~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~~ 163 (339)
T d2id4a2 94 TRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQG 163 (339)
T ss_dssp HHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCBC
T ss_pred ceeeecccccccccc--------cccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCCcccccC
Confidence 999999998743221 2389999999999999753 26677888888887665 49999999875211111
Q ss_pred -----ccH-HHHHHHHHHhCCcEEEEecCCCCCCCCcc--c--cCCCceEEEeeeccCcceeeEEEeCCCceEeeeeecc
Q 040462 277 -----KDA-IAIGAFHAMEKGILTLNSAGNSGSNLGFV--Y--SVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINS 346 (726)
Q Consensus 277 -----~~~-~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~--~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~ 346 (726)
... ...+...+..+|+++|+||||++...... + ...+.+++|++++..
T Consensus 164 ~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 221 (339)
T d2id4a2 164 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK---------------------- 221 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----------------------
T ss_pred ccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccccc----------------------
Confidence 112 23334456679999999999987654322 2 234556666654332
Q ss_pred CCCCCceeeEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeE
Q 040462 347 FAMKGKKFPLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPA 426 (726)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 426 (726)
T Consensus 222 -------------------------------------------------------------------------------- 221 (339)
T d2id4a2 222 -------------------------------------------------------------------------------- 221 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEEeecCCCCCCCCCC
Q 040462 427 VAVSMENFNSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDILAAVSPLAPISTDP 506 (726)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 506 (726)
+..+.||++|+.. ...++..+||..+.+....+
T Consensus 222 ------------------------------------g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~------- 254 (339)
T d2id4a2 222 ------------------------------------DLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING------- 254 (339)
T ss_dssp ------------------------------------SCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT-------
T ss_pred ------------------------------------ccccccccccCcc----ceeeeeeccccccceeccCC-------
Confidence 3445667777643 33457778999998876554
Q ss_pred CCccccceeecccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCC---------CCCCCCcCCCCccCcc
Q 040462 507 EDKRRVKYSIESGTSMACPHAAAVAAYVKSFHPDWSPSAIRSAIMTTAWPMNSSK---------VNDAEVAFGSGHVNPV 577 (726)
Q Consensus 507 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~sp~~Ik~~L~~TA~~i~~~~---------~~~~~~~~G~G~vn~~ 577 (726)
..|..++|||||||||||++|||+|++|+|++.|||++|++||+++.... ++..+..||||+||+.
T Consensus 255 -----~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~ 329 (339)
T d2id4a2 255 -----RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAH 329 (339)
T ss_dssp -----CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHH
T ss_pred -----CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhCHH
Confidence 36889999999999999999999999999999999999999999775431 1224667999999999
Q ss_pred ccCCC
Q 040462 578 KAVNP 582 (726)
Q Consensus 578 ~A~~~ 582 (726)
+||+.
T Consensus 330 ~Av~~ 334 (339)
T d2id4a2 330 KLIEM 334 (339)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99973
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=4.1e-31 Score=283.77 Aligned_cols=305 Identities=16% Similarity=0.114 Sum_probs=188.3
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 128 KHSVESNIIIGVIDSGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 128 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
.+++|+||+|||||||||++||+|.+. |+. .+..+ ....+.|.++|+||+++++++
T Consensus 19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---~~~~~-------------~~~~~~~~~g~~~~~~g~~~~ 74 (357)
T d1t1ga_ 19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---LGVSA-------------PQVVSVSVDGATNQPTGDPNG 74 (357)
T ss_dssp TTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---TTCCC-------------CCEEEEESTTCCCCCCSCTTS
T ss_pred CCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh---cCCCC-------------CCCceeCCCCCCCCCCCcccc
Confidence 589999999999999999999999742 110 01000 012334677899999998876
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCCCCHHHHHHHHHHHHh---CCCeEEEeccCCCCCC--CccccHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSGCASTDILAAFDDAIA---DGVDIITVSLGGNIPV--DFIKDAIAI 282 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~---~gvdVIn~S~G~~~~~--~~~~~~~~~ 282 (726)
...... .....+.||||+|+|+.+|+... ...++.++++++. ++++|||+|||..... ......+..
T Consensus 75 ~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 146 (357)
T d1t1ga_ 75 PDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNR 146 (357)
T ss_dssp THHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHH
T ss_pred cccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHHHHH
Confidence 532110 01112489999999999999853 3455566666654 5899999999975211 122345666
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC--------ccccCCCceEEEeeeccCcceeeEEEeCCCceEeeeeeccCCCCCcee
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLG--------FVYSVAPWLMSVAASTTDRLFVDKVLLGNGATLSGYSINSFAMKGKKF 354 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~p~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~ 354 (726)
....+..+|+++|+|+||+|.... ..+...+++++|++.......... ...+.+....
T Consensus 147 ~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~----- 212 (357)
T d1t1ga_ 147 AFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRI---------ERETVWNDGP----- 212 (357)
T ss_dssp HHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCE---------EEEEECBCHH-----
T ss_pred hhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCCcc---------ccceeccccc-----
Confidence 667788999999999999985432 233467889999887543210000 0000000000
Q ss_pred eEEecCCCCCCCCcCCCCCCCCCCCCCCCccceEEEEEecchhHHHHhcCceEEEEEecCCCCceeeeeeeEEEeehhhH
Q 040462 355 PLVHGKEVSESCPEFSSQACNPGCINSSLVKGKIVMCSKFDGYTEVHKVGAAGSILFNDQYEKVSFVVSLPAVAVSMENF 434 (726)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~ 434 (726)
....... ......+.
T Consensus 213 -~~~~~~~-----g~s~~~~~----------------------------------------------------------- 227 (357)
T d1t1ga_ 213 -DGGSTGG-----GVSRIFPL----------------------------------------------------------- 227 (357)
T ss_dssp -HHCBCCC-----EECSSSCC-----------------------------------------------------------
T ss_pred -ccccccC-----Cccccccc-----------------------------------------------------------
Confidence 0000000 00000000
Q ss_pred HHHHHHHhcCCCCeEEEeeeeeecCCCCCcccccCCCCCCCCCCCCcCCceEeCCccEE--eecCCCCCCCCCCCCcccc
Q 040462 435 NSLISYKNSTKKPEAEILKTEAIKDFDAPVVAPFSSRGPNAILPDILKPDISAPGVDIL--AAVSPLAPISTDPEDKRRV 512 (726)
Q Consensus 435 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~GP~~~~~~~lKPDI~APG~~I~--sa~~~~~~~~~~~~~~~~~ 512 (726)
..........+++++++. .++.|||+.+++.... +.... .
T Consensus 228 -----------------------p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~-------------~ 269 (357)
T d1t1ga_ 228 -----------------------PSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID-------------G 269 (357)
T ss_dssp -----------------------CGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET-------------T
T ss_pred -----------------------CcccccccccccccCCCC--CCceecceecccCCCCceEEecC-------------C
Confidence 001113456677777776 8899999999875543 33332 3
Q ss_pred ceeecccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHhccccCCCC------------CCCCCCCcCCCCccCcc
Q 040462 513 KYSIESGTSMACPHAAAVAAYVKSFHPD---WSPSAIRSAIMTTAWPMNSS------------KVNDAEVAFGSGHVNPV 577 (726)
Q Consensus 513 ~y~~~sGTSmAaP~VAG~aALl~~~~P~---~sp~~Ik~~L~~TA~~i~~~------------~~~~~~~~~G~G~vn~~ 577 (726)
.|..++|||||||||||++|||+|+++. +...+++.+...+.+++... ..+.++..+|||++|+.
T Consensus 270 ~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~~n~~ 349 (357)
T d1t1ga_ 270 ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGI 349 (357)
T ss_dssp EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCEECHH
T ss_pred ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCchhhHH
Confidence 7999999999999999999999998643 33444544444444443221 12346778999999988
Q ss_pred ccCC
Q 040462 578 KAVN 581 (726)
Q Consensus 578 ~A~~ 581 (726)
++++
T Consensus 350 ~~~~ 353 (357)
T d1t1ga_ 350 RLLQ 353 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.2e-28 Score=266.38 Aligned_cols=167 Identities=17% Similarity=0.105 Sum_probs=117.9
Q ss_pred CCCCCCcEEEEEcccCCCC-CCCCCCCCCCCCCCCccccccCCCcccCCceeeeeeecCCCCCCCCCCCCcchhhhcccc
Q 040462 129 HSVESNIIIGVIDSGIWPE-SESFSDEGFGPAPKKWKGACNGGKNFTCNNKLIGARYYTTDGTARDKDGHGTHTASTAAG 207 (726)
Q Consensus 129 ~~~G~gV~VgVIDtGid~~-Hp~f~~~g~~~~~~~~~g~~~~g~~f~~n~klig~~~~~~~~~~~D~~gHGThVAgiaag 207 (726)
..+|+||+|||||+|.++. |+||..- |+ ..+... ++... .....+..+||||+++++.+
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f--------~~---~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~e~ 80 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQF--------TS---ANGLAS-VNTQT--------IQTGSSNGDYSDDQQGQGEW 80 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHH--------HH---HTTCCC-CCEEE--------EECSCTTSCCCBCHHHHHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHH--------HH---hcCCCC-CCCCe--------ecCCCCCCCCCCCCCcceee
Confidence 4689999999999998764 6666410 00 000000 00000 12234567899999999876
Q ss_pred CcCCCCccccccCcceeecccCceEEEEEeeCCCC-CCHHHHHHHHHHHHh-CCCeEEEeccCCCCC---CCccccHHHH
Q 040462 208 NEVKDASFYGVGQGTARGGVPSARIAAYKVCNPSG-CASTDILAAFDDAIA-DGVDIITVSLGGNIP---VDFIKDAIAI 282 (726)
Q Consensus 208 ~~~~~~~~~G~~~G~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~-~gvdVIn~S~G~~~~---~~~~~~~~~~ 282 (726)
... ...+.||||+|+|++++++.+.+ ....+++++|++|++ ++++|||+|||.... .....+.++.
T Consensus 81 ~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~ 151 (369)
T d1ga6a_ 81 DLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDR 151 (369)
T ss_dssp HHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHH
T ss_pred ccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHH
Confidence 521 11238999999999999998876 778899999999986 579999999997521 1234456777
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC-------------ccccCCCceEEEeeeccC
Q 040462 283 GAFHAMEKGILTLNSAGNSGSNLG-------------FVYSVAPWLMSVAASTTD 324 (726)
Q Consensus 283 a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVgA~~~~ 324 (726)
++.+|.++||+||+||||+|.... ..+...|++++|+++...
T Consensus 152 a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~ 206 (369)
T d1ga6a_ 152 IFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 206 (369)
T ss_dssp HHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeeccc
Confidence 788889999999999999986432 234567899999987543
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=3.1e-08 Score=78.32 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=54.5
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeecceeeEEEEEeCHHHHHHHHcCCCeEEEEeCceecc
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYRRSFNGFAAKLTDLERQKLASMEEVVSVFPSRTLQF 110 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~ 110 (726)
+++|||.|+++.. ......+.+ +.+ ..+.++.+.|+ .++||+++|++++++.|+++|+|.+||+|..++.
T Consensus 1 e~~YIV~fK~~~~-~~~~~~~~~-~v~------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 1 EKKYIVGFKQTMS-AMSSAKKKD-VIS------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp CEEEEEEECSSSS-CCSHHHHHH-HHH------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCcEEEEECCCCC-hHHHHHHHH-HHH------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 4689999999865 222222222 222 23578999996 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.46 E-value=1.6e-07 Score=74.29 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=49.7
Q ss_pred CcEEEEEeCCCCCCCCcchhHHHHHHHHhhcCCCCCCcEEEeec-ceeeEEEEEeCHHHHHHHHcCCC--eEEEEeCc
Q 040462 32 RKVYIVYIGSLPKGEYVTSSHHQSILQEVVEGSSVGDVLVRSYR-RSFNGFAAKLTDLERQKLASMEE--VVSVFPSR 106 (726)
Q Consensus 32 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~-~~~~g~s~~l~~~~~~~L~~~p~--V~~v~~~~ 106 (726)
.++|||.|++... ......+..++.+. ...+.+.|. +.|+||+++|++++++.|+++|+ |.+||+|.
T Consensus 2 aG~YIVvlK~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 2 AGKFIVIFKNDVS-EDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CEEEEEEECTTCC-HHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CccEEEEECCCCC-HHHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 3789999998765 22333344343221 245677776 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=93.39 E-value=0.39 Score=39.22 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCceEEEeecCCCCceEEEEEEEEeccCCCee-EEEEEEeecceeEEEEec------ceeeEEEEEEeccCCCCCCeEE
Q 040462 629 LNYPSMAAQVSRAKPFTVNFPRIVTNVGLANST-YRAKFFQKFTIISVKVVP------EKKPFVVTVTGKGLPESGTVVP 701 (726)
Q Consensus 629 ln~ps~~~~~~~~~~~~~~~~rtvtnvg~~~~t-y~~~v~~~p~g~~v~v~p------~~~~~~vt~~~~~~~~~~~~~~ 701 (726)
|..|++.+.-.. +.+++.+|+|.|....+ -++.++. |.|-+++..+ |+++++++|+.......+.|..
T Consensus 6 ~t~p~~~v~pG~----~~~~~vtVtN~g~~~~~~~~~~~~~-P~GW~v~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i 80 (103)
T d1w8oa1 6 FTIPDVALEPGQ----QVTVPVAVTNQSGIAVPKPSLQLDA-SPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRV 80 (103)
T ss_dssp EECCCEEECTTC----EEEEEEEEECCSSSCBSSCEEEEEC-CTTSEEEEEECCBCTTCEEEEEEEEECCTTCCCEEEEE
T ss_pred ccCcceeeCCCC----eEEEEEEEEeCCCCceeeeeEEEcC-CCCccccCcceeeCCCCcEEEEEEEECCCCCCCceEEE
Confidence 345777665432 89999999999986644 5677888 9997665444 8888888888754323445544
Q ss_pred EEEEEEcCCeEEEeeEEE
Q 040462 702 ATLVWSDGIHSVRSPIVV 719 (726)
Q Consensus 702 G~~~~~~~~~~vr~p~~~ 719 (726)
. ++.+++.......+-+
T Consensus 81 ~-~~a~~~~~~~s~t~tv 97 (103)
T d1w8oa1 81 G-ATLRTSAGNASTTFTV 97 (103)
T ss_dssp E-EEEEETTEEEEEEEEE
T ss_pred E-EEEEeCCcceEEEEEE
Confidence 3 4445444444444433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.057 Score=49.53 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=48.3
Q ss_pred CCccceEEEEEe-----cchhHHHHhcCceEEEEEecCCCCce-------e--e--------------------------
Q 040462 382 SLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQYEKVS-------F--V-------------------------- 421 (726)
Q Consensus 382 ~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~~~~~~-------~--~-------------------------- 421 (726)
.+++|||+|+.+ .+|..+|++.||+|+|++.+...... . .
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~ 138 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 138 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence 578999999986 68899999999999999986542100 0 0
Q ss_pred --eeeeEEEeehhhHHHHHHHHh
Q 040462 422 --VSLPAVAVSMENFNSLISYKN 442 (726)
Q Consensus 422 --~~~p~~~i~~~~~~~l~~~~~ 442 (726)
-.||+.-|+..+++.|+..++
T Consensus 139 ~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 139 GLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcCCeeeCCHHHHHHHHHHcC
Confidence 137899999999999998775
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.36 Score=45.35 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.3
Q ss_pred CCCccceEEEEEe-----cchhHHHHhcCceEEEEEecC
Q 040462 381 SSLVKGKIVMCSK-----FDGYTEVHKVGAAGSILFNDQ 414 (726)
Q Consensus 381 ~~~~~gkiv~~~~-----~~~~~~~~~~Ga~g~i~~~~~ 414 (726)
.-+++|||+|+.+ .+|..+|++.||+|+|++++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 3579999999986 788999999999999999975
|