Citrus Sinensis ID: 040468

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
Protein Sequence
TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccccccHHHHHHccccccEEEccccccEEcccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccEEEEEccHHHHccccccEEEccccccEEccccccccccccEEEEEccEEEEEccccccccccccEEEccccEEEEEccccccccccccccccccccccccccHHccccccccEEEccccEEEEccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHcccEEEcccccccccccHHHHccccccEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHHcccccEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHHHccccccccccccccccEEEcccccccccccHHHHHcccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHccccHHcc
Coil and Loop (DISEMBL)
tfdgeicaeteshynsltpkfqltsislsgyidggtfpkflyhqhdlknanlshlnlsgefpnwlvenNTNLETLLLANnslfgsfrmpihshqklatldvsnnffqghipveigtylpglmefnlsrnafngsipssfADMQMLARLDISYnqltgeipermatgcFSLEILALSNnslqghifskkfSLTNLMTlqldgnnfsgeipeSLSKCRrlgglylsdnhlsgeiprwlGNLSFLVDIimpnnnleglipieFCQLRFLRILdlsnntifgtlpscfspayieQVHLSKNKIEgrlesvipdspnlvtldlsynclhgsipnridrlpqLSYLLLANNYIEGEIPVQLCQLKEVQLIDlshnnlsghippclvntslseghdepvaptssscgrasgyassytktalnattpfssscgrgypyaldyvgsrtppmgkeetIQFTTKNMSYYYQGRILTSMFGIDLscnkltgeiptqiGYLTKIHALNLshnnltgtipttfsnlkQIESLDLSYNllhgkipsqltVLTTLAVFR
Flexible Loop (DISEMBL)
TFDGEICAETeshynsltpkFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALnattpfssscgrGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLhgkipsqltvlttlavfr
Low Complexity Region (SEG)
TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPnwlvenntnletlllannslFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR
Disordered region (IsUnstruct)
*************YNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN*******************************ALNATTPFSSSCGRGYPYALDYVGSR*******ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF*
Disordered Region (DISOPRED)
TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR
Disordered Region (DISEMBL)
TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS********************ASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR
Disordered Region (DISPRO)
*****ICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	543	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.924	0.401	0.324	4e-53
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.865	0.430	0.322	1e-50
P93194	1109	Receptor-like protein kin	N/A	no	0.918	0.449	0.305	1e-49
Q9LJF3	1164	Receptor-like protein kin	no	no	0.896	0.418	0.321	5e-49
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.930	0.403	0.314	1e-48
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.878	0.417	0.303	7e-48
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.863	0.388	0.312	9e-48
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.920	0.414	0.313	1e-47
Q9LHP4	1141	Receptor-like protein kin	no	no	0.904	0.430	0.302	2e-47
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.880	0.401	0.325	3e-47

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 182/561 (32%), Positives = 270/561 (48%), Gaps = 59/561 (10%)

Query: 16  SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETL 75
           SL     L ++ LS     G  P+  ++   L +  L++ +LSG  P  +  NNTNLE L
Sbjct: 282 SLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query: 76  LLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIP------VEI-----------GTYL 118
           +L+   L G   + +   Q L  LD+SNN   G IP      VE+           GT  
Sbjct: 342 VLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS 401

Query: 119 PG------LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI 172
           P       L    L  N   G +P   + ++ L  L +  N+ +GEIP+ +   C SL++
Sbjct: 402 PSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN-CTSLKM 460

Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
           + +  N  +G I      L  L  L L  N   G +P SL  C +L  L L+DN LSG I
Sbjct: 461 IDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL-PSCFSPAYIEQ 291
           P   G L  L  +++ NN+L+G +P     LR L  ++LS+N + GT+ P C S +Y+  
Sbjct: 521 PSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL-S 579

Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
             ++ N  E  +   + +S NL  L L  N L G IP  + ++ +LS L +++N + G I
Sbjct: 580 FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTI 639

Query: 352 PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTS------LSEGHDEPVAPTSS-SCGRASG 404
           P+QL   K++  IDL++N LSG IPP L   S      LS        PT   +C +   
Sbjct: 640 PLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL-- 697

Query: 405 YASSYTKTALNATTPFS-SSCGRGYPYALD---YVGSRTPPMGKEETIQFTTKNMSYYYQ 460
              S    +LN + P    + G      LD   + GS    MGK                
Sbjct: 698 LVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK---------------- 741

Query: 461 GRILTSMFGIDLSCNKLTGEIPTQIGYLTKIH-ALNLSHNNLTGTIPTTFSNLKQIESLD 519
              L+ ++ + LS N LTGEIP +IG L  +  AL+LS+NN TG IP+T   L ++E+LD
Sbjct: 742 ---LSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLD 798

Query: 520 LSYNLLHGKIPSQLTVLTTLA 540
           LS+N L G++P  +  + +L 
Sbjct: 799 LSHNQLTGEVPGSVGDMKSLG 819

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score =  201 bits (512), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 241/487 (49%), Gaps = 17/487 (3%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
           T LE L L++NSL G   + I   +KL TL ++ N  +GHIP+EIG  L GL+E  L  N
Sbjct: 117 TELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGN-LSGLVELMLFDN 175

Query: 130 AFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSNNSLQGHIFSKK 188
             +G IP S  +++ L  L    N+ L GE+P  +   C +L +L L+  SL G + +  
Sbjct: 176 KLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGN-CENLVMLGLAETSLSGKLPASI 234

Query: 189 FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMP 248
            +L  + T+ +  +  SG IP+ +  C  L  LYL  N +SG IP  +G L  L  +++ 
Sbjct: 235 GNLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLW 294

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVI 307
            NNL G IP E      L ++D S N + GT+P  F     ++++ LS N+I G +   +
Sbjct: 295 QNNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKLENLQELQLSVNQISGTIPEEL 354

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
            +   L  L++  N + G IP+ +  L  L+      N + G IP  L Q +E+Q IDLS
Sbjct: 355 TNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLS 414

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR- 426
           +N+LSG IP  +                S       G  ++  +  LN      S     
Sbjct: 415 YNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEI 474

Query: 427 GYPYALDY--------VGSRTPPMGKEETIQFT---TKNMSYYYQGRIL-TSMFGIDLSC 474
           G    L++        VGS  P +   E+++F    T ++S    G  L  S+  ID S 
Sbjct: 475 GNLKNLNFVDISENRLVGSIPPAISGCESLEFLDLHTNSLSGSLLGTTLPKSLKFIDFSD 534

Query: 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 534
           N L+  +P  IG LT++  LNL+ N L+G IP   S  + ++ L+L  N   G+IP +L 
Sbjct: 535 NALSSTLPPGIGLLTELTKLNLAKNRLSGEIPREISTCRSLQLLNLGENDFSGEIPDELG 594

Query: 535 VLTTLAV 541
            + +LA+
Sbjct: 595 QIPSLAI 601

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 177/579 (30%), Positives = 267/579 (46%), Gaps = 80/579 (13%)

Query: 33  DGGTFPKFLYHQHDLKNANLSHLNLSGEFP-NWL---VENNTNLETLLLANNSLFGSFRM 88
           DG        H   + +      N S   P +WL    +    ++TL L++  + G F  
Sbjct: 27  DGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGP 86

Query: 89  PIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME-FNLSRNAFNGSIPSSFADMQMLAR 147
            I   + L  + +S N F G IP ++G     L+E  +LS N+F G+IP +   +Q L  
Sbjct: 87  EISHLKHLKKVVLSGNGFFGSIPSQLGNC--SLLEHIDLSSNSFTGNIPDTLGALQNLRN 144

Query: 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE 207
           L + +N L G  PE + +    LE +  + N L G I S   +++ L TL LD N FSG 
Sbjct: 145 LSLFFNSLIGPFPESLLS-IPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGP 203

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
           +P SL     L  LYL+DN+L G +P  L NL  LV + + NN+L G IP++F   + + 
Sbjct: 204 VPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQID 263

Query: 268 ILDLSNN------------------------TIFGTLPSCFSP-AYIEQVHLSKNKIEGR 302
            + LSNN                         + G +PSCF     ++ ++L+ N   GR
Sbjct: 264 TISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGR 323

Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
           +   +    +++ L L  N L G IP  +  L QL YL L  N + GE+P+ + +++ +Q
Sbjct: 324 IPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQ 383

Query: 363 LIDLSHNNLSGHIP------PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNA 416
            + L  NNLSG +P        LV+ +L E H   V P       +S      T+     
Sbjct: 384 SLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLG-ANSSLEVLDLTRNMFTG 442

Query: 417 TTPFSSSCGR--------GYPYALDYVGSRTPPMGKEETIQ---------------FTTK 453
             P  + C +        GY Y     GS    +G   T++               F  K
Sbjct: 443 HIP-PNLCSQKKLKRLLLGYNY---LEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEK 498

Query: 454 -NMSYY------YQGRI------LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNN 500
            N+ ++      + G I      L ++  I LS N+L+G IP ++G L K+  LNLSHN 
Sbjct: 499 QNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNI 558

Query: 501 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
           L G +P+  SN  ++  LD S+NLL+G IPS L  LT L
Sbjct: 559 LKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTEL 597

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 261/523 (49%), Gaps = 36/523 (6%)

Query: 45  HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSHQKLATLDVSN 103
           + LK+ +LS  N++G+F         NL    L+ NS+ G  F + + + + L TL++S 
Sbjct: 201 NSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSR 260

Query: 104 NFFQGHIPVE--IGTYLPGLMEFNLSRNAFNGSIPSSFADM-QMLARLDISYNQLTGEIP 160
           N   G IP +   G +   L + +L+ N ++G IP   + + + L  LD+S N LTG++P
Sbjct: 261 NSLIGKIPGDDYWGNF-QNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLP 319

Query: 161 ERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLG 219
           +   T C SL+ L L NN L G   S   S L+ +  L L  NN SG +P SL+ C  L 
Sbjct: 320 QSF-TSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLR 378

Query: 220 GLYLSDNHLSGEIPRWLGNL---SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
            L LS N  +GE+P    +L   S L  +++ NN L G +P+E  + + L+ +DLS N +
Sbjct: 379 VLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNAL 438

Query: 277 FGTLPSCFS--PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL 334
            G +P      P   + V  + N   G  ES+  D  NL TL L+ N L GS+P  I + 
Sbjct: 439 TGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPESISKC 498

Query: 335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN-----------TS 383
             + ++ L++N + GEIPV + +L+++ ++ L +N+L+G+IP  L N            +
Sbjct: 499 TNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNN 558

Query: 384 LSEGHDEPVAPTSSSC--GRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPP 441
           L+      +A  +     G  SG   ++ +          + C RG    +++ G R   
Sbjct: 559 LTGNLPGELASQAGLVMPGSVSGKQFAFVRNE------GGTDC-RGAGGLVEFEGIRAER 611

Query: 442 MGKEETIQFTTKNMSY----YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLS 497
           +     +    K   Y     Y      SM  +DLS N ++G IP   G +  +  LNL 
Sbjct: 612 LEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLG 671

Query: 498 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA 540
           HN LTGTIP +F  LK I  LDLS+N L G +P  L  L+ L+
Sbjct: 672 HNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLS 714

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 175/556 (31%), Positives = 261/556 (46%), Gaps = 51/556 (9%)

Query: 17  LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLL 76
           LT    L ++ LS     G   +  +  + L+   L+   LSG  P  +  NNT+L+ L 
Sbjct: 284 LTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLF 343

Query: 77  LANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIP------VEI-----------GTY-- 117
           L+   L G     I + Q L  LD+SNN   G IP      VE+           GT   
Sbjct: 344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query: 118 ----LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY---NQLTGEIPERMATGCFSL 170
               L  L EF L  N   G +P    ++  L +L+I Y   N+ +GE+P  +   C  L
Sbjct: 404 SISNLTNLQEFTLYHNNLEGKVPK---EIGFLGKLEIMYLYENRFSGEMPVEIGN-CTRL 459

Query: 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG 230
           + +    N L G I S    L +L  L L  N   G IP SL  C ++  + L+DN LSG
Sbjct: 460 QEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSG 519

Query: 231 EIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL-PSCFSPAYI 289
            IP   G L+ L   ++ NN+L+G +P     L+ L  ++ S+N   G++ P C S +Y+
Sbjct: 520 SIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL 579

Query: 290 EQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG 349
               +++N  EG +   +  S NL  L L  N   G IP    ++ +LS L ++ N + G
Sbjct: 580 -SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSG 638

Query: 350 EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY 409
            IPV+L   K++  IDL++N LSG IP  L    L       +     S  +  G   + 
Sbjct: 639 IIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL-------LGELKLSSNKFVGSLPTE 691

Query: 410 TKTALNATTPF--SSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI--LT 465
             +  N  T F   +S     P  +  + +          +      +S      I  L+
Sbjct: 692 IFSLTNILTLFLDGNSLNGSIPQEIGNLQALN-------ALNLEENQLSGPLPSTIGKLS 744

Query: 466 SMFGIDLSCNKLTGEIPTQIGYLTKIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 524
            +F + LS N LTGEIP +IG L  +  AL+LS+NN TG IP+T S L ++ESLDLS+N 
Sbjct: 745 KLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQ 804

Query: 525 LHGKIPSQLTVLTTLA 540
           L G++P Q+  + +L 
Sbjct: 805 LVGEVPGQIGDMKSLG 820

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 179/589 (30%), Positives = 261/589 (44%), Gaps = 112/589 (19%)

Query: 27  SLSGYIDGGTFPKFLYHQH-DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFG- 84
           S SG I  GT P+  + ++ +L +  LS+ N +G+ PN L  ++  L+TL L+ N++ G 
Sbjct: 135 SSSGLI--GTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGP 192

Query: 85  --SFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADM 142
                +P+ S   +  LD S N   G+I   +      L   NLS N F+G IP SF ++
Sbjct: 193 ISGLTIPLSSCVSMTYLDFSGNSISGYISDSL-INCTNLKSLNLSYNNFDGQIPKSFGEL 251

Query: 143 QMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN 202
           ++L  LD+S+N+LTG IP  +   C SL+                         L+L  N
Sbjct: 252 KLLQSLDLSHNRLTGWIPPEIGDTCRSLQ------------------------NLRLSYN 287

Query: 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIP----RWLGNLSFLVDIIMPNNNLEGLIPI 258
           NF+G IPESLS C  L  L LS+N++SG  P    R  G+L  L   ++ NN + G  P 
Sbjct: 288 NFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQIL---LLSNNLISGDFPT 344

Query: 259 EFCQLRFLRILDLSNNTIFGTLPS--CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
                + LRI D S+N   G +P   C   A +E++ L  N + G +   I     L T+
Sbjct: 345 SISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTI 404

Query: 317 DLS------------------------YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
           DLS                        YN + G IP  I +L  L  L+L NN + GEIP
Sbjct: 405 DLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIP 464

Query: 353 VQL--CQ----------------------LKEVQLIDLSHNNLSGHIPPCL--------- 379
            +   C                       L  + ++ L +NN +G IPP L         
Sbjct: 465 PEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWL 524

Query: 380 -VNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR 438
            +NT+   G   P           SG  S  T   +       +SC +G    +++ G R
Sbjct: 525 DLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNV---GNSC-KGVGGLVEFSGIR 580

Query: 439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFG-------IDLSCNKLTGEIPTQIGYLTKI 491
             P    +     + + +  Y G IL S+F        +DLS N+L G+IP +IG +  +
Sbjct: 581 --PERLLQIPSLKSCDFTRMYSGPIL-SLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIAL 637

Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA 540
             L LSHN L+G IP T   LK +   D S N L G+IP   + L+ L 
Sbjct: 638 QVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLV 686

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 180/576 (31%), Positives = 260/576 (45%), Gaps = 107/576 (18%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           +L   SL G    G+ P+  +   +L   +LS  N S  FP++  ++ +NL+ L L++N 
Sbjct: 213 ELEFFSLKGNKLAGSIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNK 268

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFF----------------------QGHIPVEIGTYLP 119
            +G     + S  KL+ L+++NN F                      QG  P ++     
Sbjct: 269 FYGDIGSSLSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLYLRGNDFQGVYPNQLADLCK 328

Query: 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP-----------------ER 162
            ++E +LS N F+G +P S  +   L  +DISYN  +G++P                  +
Sbjct: 329 TVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNK 388

Query: 163 MATGC-------FSLEILALSNNSLQGHIFSK--KFSLTNLMTLQLDGNNFSGEIPESLS 213
              G          LE L +S+N+L G I S   K  + NL  L L  N F G IP+SLS
Sbjct: 389 FVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLS 448

Query: 214 KCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN 273
            C +L  L LS N+L+G IP  LG+LS L D+I+  N L G IP E   L+ L  L L  
Sbjct: 449 NCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDF 508

Query: 274 NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR 333
           N + G +P+  S                       +   L  + LS N L G IP  + R
Sbjct: 509 NDLTGPIPASLS-----------------------NCTKLNWISLSNNQLSGEIPASLGR 545

Query: 334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVA 393
           L  L+ L L NN I G IP +L   + +  +DL+ N L+G IPP L   S          
Sbjct: 546 LSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQS---------- 595

Query: 394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTK 453
             + +    +G    Y K         S  C  G    L++ G R     +E+  + +T+
Sbjct: 596 -GNIAVALLTGKRYVYIKN------DGSKEC-HGAGNLLEFGGIR-----QEQLDRISTR 642

Query: 454 ---NMSYYYQGRIL------TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT 504
              N +  Y+G          SM  +DLS NKL G IP ++G +  +  LNL HN+L+G 
Sbjct: 643 HPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGM 702

Query: 505 IPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA 540
           IP     LK +  LDLSYN  +G IP+ LT LT L 
Sbjct: 703 IPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLG 738

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 171/545 (31%), Positives = 271/545 (49%), Gaps = 45/545 (8%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           +L   S+ G    G+ P+  +   +L   +LS  N S  FP++  ++ +NL+ L L++N 
Sbjct: 213 ELEFFSIKGNKLAGSIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNK 268

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG--LMEFNLSRNAFNGSIPSSF 139
            +G     + S  KL+ L+++NN F G +P      LP   L    L  N F G  P+  
Sbjct: 269 FYGDIGSSLSSCGKLSFLNLTNNQFVGLVP-----KLPSESLQYLYLRGNDFQGVYPNQL 323

Query: 140 ADM-QMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI-FSKKFSLTNLMTL 197
           AD+ + +  LD+SYN  +G +PE +   C SLE++ +SNN+  G +       L+N+ T+
Sbjct: 324 ADLCKTVVELDLSYNNFSGMVPESLGE-CSSLELVDISNNNFSGKLPVDTLLKLSNIKTM 382

Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGN--LSFLVDIIMPNNNLEGL 255
            L  N F G +P+S S   +L  L +S N+L+G IP  +    ++ L  + + NN  +G 
Sbjct: 383 VLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGP 442

Query: 256 IPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLV 314
           IP        L  LDLS N + G++PS   S + ++ + L  N++ G +   +     L 
Sbjct: 443 IPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALE 502

Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374
            L L +N L G IP  +    +L+++ L+NN + GEIP  L +L  + ++ L +N++SG+
Sbjct: 503 NLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGN 562

Query: 375 IPPCL----------VNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSC 424
           IP  L          +NT+   G   P  P     G  +  A    K  +      S  C
Sbjct: 563 IPAELGNCQSLIWLDLNTNFLNGSIPP--PLFKQSGNIA-VALLTGKRYVYIKNDGSKEC 619

Query: 425 GRGYPYALDYVGSRTPPMGKEETIQFTTK---NMSYYYQGRIL------TSMFGIDLSCN 475
             G    L++ G R     +E+  + +T+   N +  Y+G          SM  +DLS N
Sbjct: 620 -HGAGNLLEFGGIR-----QEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYN 673

Query: 476 KLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTV 535
           KL G IP ++G +  +  LNL HN+L+G IP     LK +  LDLSYN  +G IP+ LT 
Sbjct: 674 KLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTS 733

Query: 536 LTTLA 540
           LT L 
Sbjct: 734 LTLLG 738

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 255/545 (46%), Gaps = 54/545 (9%)

Query: 19  PKFQ-LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
           P F+ L  +++SG    GT P+ L     LK  +LS   L G+ P W +    NLETL+L
Sbjct: 102 PAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIP-WSLSKLRNLETLIL 160

Query: 78  ANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-FNGSIP 136
            +N L G     I    KL +L + +N   G IP E+G  L GL    +  N   +G IP
Sbjct: 161 NSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGK-LSGLEVIRIGGNKEISGQIP 219

Query: 137 SSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT 196
           S   D                         C +L +L L+  S+ G++ S    L  L T
Sbjct: 220 SEIGD-------------------------CSNLTVLGLAETSVSGNLPSSLGKLKKLET 254

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256
           L +     SGEIP  L  C  L  L+L +N LSG IPR +G L+ L  + +  N+L G I
Sbjct: 255 LSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGI 314

Query: 257 PIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVT 315
           P E      L+++DLS N + G++PS     +++E+  +S NK  G + + I +  +LV 
Sbjct: 315 PEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQ 374

Query: 316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375
           L L  N + G IP+ +  L +L+     +N +EG IP  L    ++Q +DLS N+L+G I
Sbjct: 375 LQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTI 434

Query: 376 PP-----------CLVNTSLSEGHDEPVAPTSS------SCGRASGYASSYTKTALNATT 418
           P             L++ SLS    + +   SS         R +G   S   + L    
Sbjct: 435 PSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGS-LKKIN 493

Query: 419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI--LTSMFGIDLSCNK 476
               S  R +    D +GS      + + I  +  ++       +  L+ +  +D+S N+
Sbjct: 494 FLDFSSNRLHGKVPDEIGS----CSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQ 549

Query: 477 LTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
            +G+IP  +G L  ++ L LS N  +G+IPT+      ++ LDL  N L G+IPS+L  +
Sbjct: 550 FSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDI 609

Query: 537 TTLAV 541
             L +
Sbjct: 610 ENLEI 614

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  190 bits (482), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 176/540 (32%), Positives = 252/540 (46%), Gaps = 62/540 (11%)

Query: 35  GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQ 94
           G  P  L +   LK+  LS  +LSG  P  L E    L T     N L GS    +   +
Sbjct: 272 GLIPPELGNCKSLKSLMLSFNSLSGPLPLELSE--IPLLTFSAERNQLSGSLPSWMGKWK 329

Query: 95  KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154
            L +L ++NN F G IP EI    P L   +L+ N  +GSIP        L  +D+S N 
Sbjct: 330 VLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNL 388

Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
           L+G I E +  GC SL  L L+NN + G I    + L  LM L LD NNF+GEIP+SL K
Sbjct: 389 LSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWK 446

Query: 215 C----------RRLGG--------------LYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
                       RL G              L LSDN L+GEIPR +G L+ L  + +  N
Sbjct: 447 STNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNAN 506

Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESV--- 306
             +G IP+E      L  LDL +N + G +P   +  A ++ + LS N + G + S    
Sbjct: 507 MFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSA 566

Query: 307 ------IPDSPNLV---TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ 357
                 +PD   L      DLSYN L G IP  +     L  + L+NN++ GEIP  L +
Sbjct: 567 YFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSR 626

Query: 358 LKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNAT 417
           L  + ++DLS N L+G IP  + N+   +G +      +     + G   S  K  L   
Sbjct: 627 LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKN 686

Query: 418 T---PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILT--SMFGIDL 472
               P  +S G                + +   +  +  N+S      + T   + G+ +
Sbjct: 687 KLDGPVPASLGN---------------LKELTHMDLSFNNLSGELSSELSTMEKLVGLYI 731

Query: 473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ 532
             NK TGEIP+++G LT++  L++S N L+G IPT    L  +E L+L+ N L G++PS 
Sbjct: 732 EQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSD 791

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
255581263	912	serine-threonine protein kinase, plant-t	0.913	0.543	0.505	1e-131
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.946	0.351	0.471	1e-120
224142481	781	predicted protein [Populus trichocarpa]	0.900	0.626	0.472	1e-113
359483099	1231	PREDICTED: probable LRR receptor-like se	0.942	0.415	0.427	1e-104
359482735	1097	PREDICTED: receptor-like protein 12-like	0.946	0.468	0.422	1e-102
359484714	862	PREDICTED: probable LRR receptor-like se	0.955	0.602	0.437	1e-101
296084515	798	unnamed protein product [Vitis vinifera]	0.955	0.650	0.430	1e-101
224073452	710	predicted protein [Populus trichocarpa]	0.948	0.725	0.426	2e-99
224073436	1014	predicted protein [Populus trichocarpa]	0.948	0.507	0.428	4e-99
224104257	675	predicted protein [Populus trichocarpa]	0.948	0.762	0.428	5e-99

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/540 (50%), Positives = 341/540 (63%), Gaps = 44/540 (8%)

Query: 3   DGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFP 62
           +  I  E E H     P+FQL SI  SGY   GTFP FLYHQ++L+  +LSHL+L GEFP
Sbjct: 310 NNAIYLEAELHS---APRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFP 366

Query: 63  NWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM 122
           NWL+ NNT LE L L NNSL G  ++P+H H  L  LD+SNN    HIP+EIGT+LP L 
Sbjct: 367 NWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLE 426

Query: 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182
             N+S N F+GSIPSSF +M  L  LD+S NQL+G IPE +ATGCFSL  L LSNNSLQG
Sbjct: 427 LLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQG 486

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242
            +FSK+F+LTNL  L+LD N+FSG IP+SLSK   L  + LSDNHLSG IP W+GNLS+L
Sbjct: 487 QMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYL 545

Query: 243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR 302
            ++I+ NN L+G IP+EFCQL +L +LDL+NN++ G LPSC SP+ I  VHLS+N IEG 
Sbjct: 546 QNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGP 605

Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
             +    S  LVTLDLS N + G IP  I  +  L  L L +N  +GEIP Q+C L ++ 
Sbjct: 606 WTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLS 665

Query: 363 LIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS 422
           LI L+ NNLSG IP C     L     + +AP            +      L     + +
Sbjct: 666 LIVLADNNLSGSIPSC-----LQLDQSDSLAPDVPP------VPNPLNPYYLPVRPMYFT 714

Query: 423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP 482
           +  R Y Y                             QG+IL+ + GID SCNKLTGEIP
Sbjct: 715 TKRRSYSY-----------------------------QGKILSYISGIDFSCNKLTGEIP 745

Query: 483 TQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            ++G  + I++LNLS+N  TG IP+TFSNLKQIESLDLSYN L+G IPSQL  L  L+ F
Sbjct: 746 PEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYF 805

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/534 (47%), Positives = 330/534 (61%), Gaps = 20/534 (3%)

Query: 11   ESHYNSLTPKFQLTSISLSGYI-DGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENN 69
            ES   +  P FQL    LS  I   G+ P FL++QHDL+  +LS+ +L  +FP WL++NN
Sbjct: 833  ESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNN 892

Query: 70   TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            T LE L L NNSL G F +P   +   + +D+SNN  QG +P  I   LP LM  N+SRN
Sbjct: 893  TRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRN 952

Query: 130  AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
            +F GSIPS F  M+ L  LD+S N  TG IPE +A GC SLE L LS N L G +F +  
Sbjct: 953  SFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVS 1011

Query: 190  SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
            +L +L  L+LD N+FSG+IP+ LS    L  LY+S N +SG++P W+GN+S L  ++MPN
Sbjct: 1012 NLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPN 1070

Query: 250  NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
            N+LEG IP+EFC L  L +LDLSNN + G+LPSCFSP+ +  VHL +N + G L      
Sbjct: 1071 NSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTR 1130

Query: 310  SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
            S +L TLD+  N L G IP+ I     LS LLL  N+ +G+IP QLCQL ++ ++DLS+N
Sbjct: 1131 SMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYN 1190

Query: 370  NLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYP 429
            +LSGHIP CL       G                  +  ++  +   +  FSS       
Sbjct: 1191 SLSGHIPSCLNKIQFRTGF----------------RSGKFSIISYFPSPGFSSYLYHSQH 1234

Query: 430  YALDYVGSRTPPMGKEETI-QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYL 488
              L  V   + P+  ++ + +FTTKN + +Y+G  L SM GIDLS NKLTG IP +IG L
Sbjct: 1235 IELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNL 1294

Query: 489  TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            +++HALNLSHN LTG IP  FS LK IESLDLSYN L G IP +LT LT LAVF
Sbjct: 1295 SQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVF 1348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/540 (47%), Positives = 332/540 (61%), Gaps = 51/540 (9%)

Query: 5   EICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNW 64
           EI   TE  +N L P+FQL  +SL+ +  GGTFPKFLY+QHDL+  +LSH+ + GEFP+W
Sbjct: 161 EIYESTELVHN-LIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSW 219

Query: 65  LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124
           L++NNT LE L L N+SL GS ++P  SH  L+ LD+S N  Q  IP +IG Y P L   
Sbjct: 220 LLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFL 279

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
           NLSRN F+GSIPSS ++M  L  LD+S N L+G IPE++  GC SL  L LSNN L+G  
Sbjct: 280 NLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQF 339

Query: 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVD 244
           F + F+L  L  L L GN  +G +P SLS   RL  L +S N+LSG+IPRW+G +S L  
Sbjct: 340 FWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSL-- 397

Query: 245 IIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRL 303
                                 + LDLS N ++G+LPS F S   + +V+LSKNK+EG L
Sbjct: 398 ----------------------QYLDLSENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSL 435

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
              +    +L  LDLS+N   G IP  I  L +LS+LLL  N +EG+IP QLC+L+++ L
Sbjct: 436 IGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSL 495

Query: 364 IDLSHNNLSGHIPPCLVNTSLSEGHDE-PVAPTSSSCGRASGYASSYTKTALNATTPFSS 422
           IDLSHN+L GHI PCL  TS  +   E  + P+ +S GR +                   
Sbjct: 496 IDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGREN------------------- 536

Query: 423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP 482
              RG            P M K  +++FTTK++SY ++G IL  + GIDLSCN LTGEIP
Sbjct: 537 ---RGPQIVFPVPAVEDPSMNK--SVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIP 591

Query: 483 TQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            ++G L+ I  LNLSHN+LTG IP TFSNLK+IESLDLSYN L+G+IP QL  L  L+ F
Sbjct: 592 VELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAF 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/536 (42%), Positives = 310/536 (57%), Gaps = 24/536 (4%)

Query: 9   ETESHY-NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE 67
           E E+ Y     P FQL  + LS Y   G FP FL +Q  L   +LSH NL+G FPNWL+E
Sbjct: 406 EIETEYPVGWVPLFQLKVLVLSNYKLIGDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLE 465

Query: 68  NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127
           NNT LE L+L NNSL G   +P+  + ++ +LD+S+N   G +   +   +P +   NLS
Sbjct: 466 NNTRLEYLVLRNNSLMGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLS 524

Query: 128 RNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
            N F G +PSS A+M  L  LD+S N  +GE+P+++      LE L LSNN   G IFS+
Sbjct: 525 NNGFEGILPSSIAEMSSLWSLDLSANSFSGEVPKQLLVAK-DLEFLKLSNNKFHGEIFSR 583

Query: 188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
            F+LT+L  L LD N F G +   +S+   L  L +S+N++SGEIP W+GN++ L  +++
Sbjct: 584 DFNLTSLEFLHLDNNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVL 643

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307
            NN+ +G +P E  QL+ L  LD+S NT+ G+LPS  S  Y++ +HL  N   G +    
Sbjct: 644 GNNSFKGKLPPEISQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDF 703

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
            +S NL+TLD+  N L GSIPN I RL +L   LL  N + G IP QLC L ++ L+DLS
Sbjct: 704 LNSSNLLTLDIRDNRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLS 763

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427
           +NN SG IP C  +    +   E                 +  K   N  + FS   G  
Sbjct: 764 NNNFSGSIPKCFGHIQFGDFKTE----------------HNVYKPMFNPYSFFSIYTG-- 805

Query: 428 YPYALDYVGSRTPPMGKE-ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIG 486
             Y + Y+   T     E + ++F TKN S  Y G IL  M G+DLSCN LTGEIP ++G
Sbjct: 806 --YLVKYLFFSTEAHRDEVDEVEFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELG 863

Query: 487 YLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            L+ I ALNLSHN L G++P +FS L QIESLDLSYN L G+IP +   L  L VF
Sbjct: 864 MLSSILALNLSHNQLKGSVPKSFSKLSQIESLDLSYNKLSGEIPPEFIGLNFLEVF 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/535 (42%), Positives = 313/535 (58%), Gaps = 21/535 (3%)

Query: 9   ETESHY-NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE 67
           E E+ Y     P FQL  +SLS     G  P FL +Q  L   +LSH NL+G FPNWL+E
Sbjct: 457 EVETEYPVGWVPLFQLKVLSLSSCKLTGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLE 516

Query: 68  NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127
           NNT LE LLL NNSL G   +P+  + ++ +LD+S+N   G +   +   +P +   NLS
Sbjct: 517 NNTRLEILLLRNNSLMGQL-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNITSLNLS 575

Query: 128 RNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
            N F G IPSS A+++ L  LD+S N  +GE+P+++      LEIL LSNN   G IFS+
Sbjct: 576 NNGFEGIIPSSIAELRALQILDLSTNNFSGEVPKQLLAAK-DLEILKLSNNKFHGEIFSR 634

Query: 188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
            F+LT L+ L L  N F+G +   +S+   L  L +S+N++SGEIP W+GN++ L  ++M
Sbjct: 635 DFNLTGLLCLYLGNNQFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVM 694

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307
            NNN +G +P E  QL+ +  LD+S N + G+LPS  S  Y+E +HL  N   G +    
Sbjct: 695 GNNNFKGKLPPEISQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDF 754

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
            +S NL+TLD+  N L GSIPN I  L +L  LLL  N + G IP  LC L E+ L+DLS
Sbjct: 755 LNSSNLLTLDIRENRLFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLS 814

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427
           +N+ SG IP C  +    E   E            + +        LN+   ++    + 
Sbjct: 815 NNSFSGPIPRCFGHIRFGETKKED-----------NVFGQFMYWYELNSDLVYAGYLVKH 863

Query: 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY 487
           + +        +P   +++ ++F TKN   +Y+G IL  M G+DLSCN LTGEIP ++G 
Sbjct: 864 WEFL-------SPTYNEKDEVEFVTKNRHDFYRGGILEFMSGLDLSCNNLTGEIPHELGM 916

Query: 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
           L+ I ALNLSHN L G+IP +FSNL QIESLDLSYN L G+IP +L  L  L VF
Sbjct: 917 LSWIRALNLSHNQLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVF 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/540 (43%), Positives = 317/540 (58%), Gaps = 21/540 (3%)

Query: 8   AETESHYNSLTPKFQLTSISLSGYI---DGGTFPKFLYHQHDLKNANLSHLNLSGEFPNW 64
            ETE+   S  P FQL  + LS           P FL  Q+DL+  +LSH N++G+ P W
Sbjct: 232 VETENPIWSF-PLFQLKILRLSNCTLNWPSWVLPSFLPSQYDLRMVDLSHNNITGDIPTW 290

Query: 65  LVENNTNLETLLLANNSLFGSFRMPIHS-HQKLATLDVSNNFFQGHIPVEIGTYLPGLME 123
           L++NNT LE L   +NSL G   +P +S H  +  LD S+N   G +P  IG+  PGL  
Sbjct: 291 LLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEV 350

Query: 124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
            NLSRNA  G+IPSS  DM+ L  LD+S N L+G++PE M  GC SL +L LSNNSL G 
Sbjct: 351 LNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGT 410

Query: 184 IFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV 243
           + +K  +LT+L  L LD NNFSGEI         L  L +S N L G+IP W+G+ S L 
Sbjct: 411 LPTKS-NLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLWGQIPNWIGDFSVLS 469

Query: 244 DIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL 303
            + +  N+L+G++P   C+L  LR LDLS+N I  TLP C +   ++ +HL  N++ G +
Sbjct: 470 TLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCANLKKMKFLHLENNELSGPI 529

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
             V+ ++ +LVTL+L  N L G IP+ I  L +L  LLL  N +E  IP+QLCQLK V +
Sbjct: 530 PHVLSEATSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKGNELEDSIPLQLCQLKSVSI 589

Query: 364 IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSS 423
           +DLSHN+LSG IP CL N +   G   P+               ++  +A   T  F   
Sbjct: 590 LDLSHNHLSGTIPSCLDNITF--GRKAPLM------------DGTFFTSAFGGTHVFPDP 635

Query: 424 CGRGYPYA-LDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP 482
                 +A + ++        + E I+F TK+ S  Y G IL  M G+DLS NKLTG IP
Sbjct: 636 SSYKNQFAKVQFIHISFGISAESEEIEFITKSWSESYMGNILYLMSGLDLSGNKLTGPIP 695

Query: 483 TQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            +IG L+ IH+LNLS+N L GTIP TFSNL++IESLDLS+N L  +IP Q+  L  L VF
Sbjct: 696 PEIGNLSGIHSLNLSYNQLIGTIPETFSNLQEIESLDLSHNRLTSQIPPQMVELNFLTVF 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084515|emb|CBI25536.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/543 (43%), Positives = 318/543 (58%), Gaps = 24/543 (4%)

Query: 2   FDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEF 61
           F+G I      H+ SL    +L    L+   +    P FL  Q+DL+  +LSH N++G+ 
Sbjct: 171 FEGSI------HFGSLFNHSRLVVFDLASN-NNWVLPSFLPSQYDLRMVDLSHNNITGDI 223

Query: 62  PNWLVENNTNLETLLLANNSLFGSFRMPIHS-HQKLATLDVSNNFFQGHIPVEIGTYLPG 120
           P WL++NNT LE L   +NSL G   +P +S H  +  LD S+N   G +P  IG+  PG
Sbjct: 224 PTWLLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPG 283

Query: 121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180
           L   NLSRNA  G+IPSS  DM+ L  LD+S N L+G++PE M  GC SL +L LSNNSL
Sbjct: 284 LEVLNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSL 343

Query: 181 QGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLS 240
            G + +K  +LT+L  L LD NNFSGEI         L  L +S N L G+IP W+G+ S
Sbjct: 344 HGTLPTKS-NLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLWGQIPNWIGDFS 402

Query: 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIE 300
            L  + +  N+L+G++P   C+L  LR LDLS+N I  TLP C +   ++ +HL  N++ 
Sbjct: 403 VLSTLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCANLKKMKFLHLENNELS 462

Query: 301 GRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360
           G +  V+ ++ +LVTL+L  N L G IP+ I  L +L  LLL  N +E  IP+QLCQLK 
Sbjct: 463 GPIPHVLSEATSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKGNELEDSIPLQLCQLKS 522

Query: 361 VQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPF 420
           V ++DLSHN+LSG IP CL N +   G   P+               ++  +A   T  F
Sbjct: 523 VSILDLSHNHLSGTIPSCLDNITF--GRKAPLM------------DGTFFTSAFGGTHVF 568

Query: 421 SSSCGRGYPYA-LDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG 479
                    +A + ++        + E I+F TK+ S  Y G IL  M G+DLS NKLTG
Sbjct: 569 PDPSSYKNQFAKVQFIHISFGISAESEEIEFITKSWSESYMGNILYLMSGLDLSGNKLTG 628

Query: 480 EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
            IP +IG L+ IH+LNLS+N L GTIP TFSNL++IESLDLS+N L  +IP Q+  L  L
Sbjct: 629 PIPPEIGNLSGIHSLNLSYNQLIGTIPETFSNLQEIESLDLSHNRLTSQIPPQMVELNFL 688

Query: 540 AVF 542
            VF
Sbjct: 689 TVF 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 228/535 (42%), Positives = 314/535 (58%), Gaps = 20/535 (3%)

Query: 12  SHYNSLTPKFQLTSISLSGYIDG---GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVEN 68
           + +++L PKFQL    LS           P FLY+Q DL+  +LSH N++G FP+WL++N
Sbjct: 69  AAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKN 128

Query: 69  NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR 128
           NT LE L L++NS  G+ ++  H H  +  LD+SNN   G IP +I    P L    +++
Sbjct: 129 NTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNLHTLRMAK 188

Query: 129 NAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKK 188
           N F G IPS   ++  L+ LD+S NQL+    E++ T    + +L LSNN+L G I +  
Sbjct: 189 NGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTT----IWVLKLSNNNLGGKIPTSV 244

Query: 189 FSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
           F+ + L  L L+GNNF G+I +  L +      L LS+N  SG +PR   N S L  I +
Sbjct: 245 FNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNFSILGVIDL 304

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307
             N+ +G IP +FC+   L  LDLS N + G +PSCFSP  I  VHLSKN++ G L    
Sbjct: 305 SGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLSGPLTYAF 364

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
            +S  LVT+DL  N   GSIPN I  L  LS LLL  N+ +GE+P+QLC L+++ ++D+S
Sbjct: 365 FNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLLEQLSILDVS 424

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427
           HN LSG +P CL N +  +   + +         A G+ S   + A      +    G  
Sbjct: 425 HNQLSGPLPSCLGNLTFKKSDKKAILEV------AYGFISESIEKA------YYEIMGPP 472

Query: 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY 487
              ++D + +       EE  +FTTKNM Y Y+G++L  MFGIDLS N   G IP + G 
Sbjct: 473 LVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGN 532

Query: 488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
           L+KI ++NLSHNNLTG+IP TFSNL  IESLDLSYN L+G IP Q T +TTL VF
Sbjct: 533 LSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVF 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 229/534 (42%), Positives = 317/534 (59%), Gaps = 19/534 (3%)

Query: 12  SHYNSLTPKFQLTSISLSGYIDG--GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENN 69
           + +++L PKFQL    LS   +      P FLY+Q+D++  +LSH N++  FP+WL++NN
Sbjct: 364 AAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNN 423

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
           T LE L L+NNS  G+ ++  H +  +  LD+SNN   G IP +I    P +    ++ N
Sbjct: 424 TRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANN 483

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
            F G IPS   ++  L  LD+S NQL+    E++ T  F    L LSNN+L G + +  F
Sbjct: 484 GFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTTIWF----LKLSNNNLGGQLPTSVF 539

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGG-LYLSDNHLSGEIPRWLGNLSFLVDIIMP 248
           + + L  L L GNNF G+I + L    ++   L LSDN  SG +PRWL N + L+ I + 
Sbjct: 540 NSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLS 599

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
            N  +G I  +FC+L  L  LDLS N + G +PSCFSP  I  VHLS+N++ G L     
Sbjct: 600 KNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFY 659

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
           ++ +LVT+DL  N   GS PN I  L  LS LLL  N+ +GE+PVQLC L+++ ++D+S 
Sbjct: 660 NNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQ 719

Query: 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGY 428
           N LSG +P CL N +  E   + +A   +     S    +Y +T          +  +G 
Sbjct: 720 NQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRS-IEKAYYETMGPPLVESMYNLRKG- 777

Query: 429 PYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYL 488
            + L++          EE I+FTTKNM Y Y+G+ L+ M GIDLS N   G IP + G L
Sbjct: 778 -FLLNFT---------EEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDL 827

Query: 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
           +KI +LNLSHNNLTG+IP TFSNLKQIESLDLSYN L+G IP QLT +TTL VF
Sbjct: 828 SKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVF 881

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104257|ref|XP_002333966.1| predicted protein [Populus trichocarpa] gi|222839284|gb|EEE77621.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 229/534 (42%), Positives = 317/534 (59%), Gaps = 19/534 (3%)

Query: 12  SHYNSLTPKFQLTSISLSGYIDG--GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENN 69
           + +++L PKFQL    LS   +      P FLY+Q+D++  +LSH N++  FP+WL++NN
Sbjct: 25  AAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNN 84

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
           T LE L L+NNS  G+ ++  H +  +  LD+SNN   G IP +I    P +    ++ N
Sbjct: 85  TRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANN 144

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
            F G IPS   ++  L  LD+S NQL+    E++ T  F    L LSNN+L G + +  F
Sbjct: 145 GFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTTIWF----LKLSNNNLGGQLPTSVF 200

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGG-LYLSDNHLSGEIPRWLGNLSFLVDIIMP 248
           + + L  L L GNNF G+I + L    ++   L LSDN  SG +PRWL N + L+ I + 
Sbjct: 201 NSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLS 260

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
            N  +G I  +FC+L  L  LDLS N + G +PSCFSP  I  VHLS+N++ G L     
Sbjct: 261 KNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFY 320

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
           ++ +LVT+DL  N   GS PN I  L  LS LLL  N+ +GE+PVQLC L+++ ++D+S 
Sbjct: 321 NNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQ 380

Query: 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGY 428
           N LSG +P CL N +  E   + +A   +     S    +Y +T          +  +G 
Sbjct: 381 NQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRS-IEKAYYETMGPPLVESMYNLRKG- 438

Query: 429 PYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYL 488
            + L++          EE I+FTTKNM Y Y+G+ L+ M GIDLS N   G IP + G L
Sbjct: 439 -FLLNFT---------EEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDL 488

Query: 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
           +KI +LNLSHNNLTG+IP TFSNLKQIESLDLSYN L+G IP QLT +TTL VF
Sbjct: 489 SKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVF 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.948	0.475	0.391	2.5e-81
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.966	0.544	0.373	1.4e-80
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.681	0.379	0.378	2.9e-77
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.806	0.468	0.375	3.1e-67
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.918	0.560	0.349	2.2e-66
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.674	0.366	0.377	2.7e-63
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.524	0.289	0.363	2e-53
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.821	0.356	0.302	1.6e-40
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.784	0.469	0.361	1.5e-52
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.952	0.473	0.304	1.9e-52

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 210/537 (39%), Positives = 280/537 (52%)

Query:     4 GEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPX 63
             G I  +TES   S  P FQL  + LS    G T   FL HQ DL   +LSH  L+G FP 
Sbjct:   443 GVIQVQTES---SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPT 499

Query:    64 XXXXXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME 123
                                    ++PI  H  L  LD+S+N     I  +IG   P L  
Sbjct:   500 WLVKNNTRLQTILLSGNS-LTKLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRF 557

Query:   124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
              N S N F G+IPSS  +M+ L  LD+S N L G++P    +GC+SL +L LSNN LQG 
Sbjct:   558 MNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGK 617

Query:   184 IFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV 243
             IFSK  +LT L+ L LDGNNF+G + E L K + L  L +SDN  SG +P W+G +S L 
Sbjct:   618 IFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLS 677

Query:   244 DIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL 303
              + M  N L+G  P    Q  ++ ++D+S+N+  G++P   +   + ++ L  N+  G +
Sbjct:   678 YLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLV 736

Query:   304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
                +  +  L  LDL  N   G I N ID+  +L  LLL NN  +  IP ++CQL EV L
Sbjct:   737 PGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGL 796

Query:   364 IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSS 423
             +DLSHN   G IP C   + +S G ++       +    + +  SY          F   
Sbjct:   797 LDLSHNQFRGPIPSCF--SKMSFGAEQ----NDRTMSLVADFDFSYIT--------FLPH 842

Query:   424 CGRGYPYALDYVGSRTPPMGKEETI-QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP 482
             C  G    LD  G R     K  T+  F TK+    YQG IL  M G+DLS N+L+GEIP
Sbjct:   843 CQYGSHLNLDD-GVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIP 901

Query:   483 TQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
              +IG L  I +LNLS N LTG+IP + S LK +ESLDLS N L G IP  L  L +L
Sbjct:   902 IEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSL 958

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 205/549 (37%), Positives = 297/549 (54%)

Query:     5 EICAETES----HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGE 60
             ++C+++ S      +S  PKFQL+ I+L    +    P FL HQ DL++ +LS  N+SG+
Sbjct:   323 KLCSKSSSLQVLSESSWKPKFQLSVIALRS-CNMEKVPHFLLHQKDLRHVDLSDNNISGK 381

Query:    61 FPXXXXXXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG 120
              P                    F SF++P  +H  L  LDVS N F    P  IG   P 
Sbjct:   382 LPSWLLANNTKLKVLLLQNNL-FTSFQIPKSAHN-LLFLDVSANDFNHLFPENIGWIFPH 439

Query:   121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180
             L   N S+N F  ++PSS  +M  +  +D+S N   G +P     GC+S+ IL LS+N L
Sbjct:   440 LRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKL 499

Query:   181 QGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLS 240
              G IF +  + TN++ L +D N F+G+I + L     L  L +S+N+L+G IP W+G L 
Sbjct:   500 SGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELP 559

Query:   241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIE 300
              L  +++ +N L+G IP+       L++LDLS N++ G +P          + L  NK+ 
Sbjct:   560 SLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLS 619

Query:   301 GRLESVIPDS--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358
             G     IPD+   N+  LDL  N   G IP  I+ +  +S LLL  N   G+IP QLC L
Sbjct:   620 G----TIPDTLLANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGL 674

Query:   359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT 418
               +QL+DLS+N L+G IP CL NTS   G +     TS        + S       +   
Sbjct:   675 SNIQLLDLSNNRLNGTIPSCLSNTSFGFGKE----CTSYDYDFGISFPSDVFN-GFSLHQ 729

Query:   419 PFSSSCGRGYPY----ALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC 474
              FSS+   G  +     LD + S       +  I+F TK+    Y G  L  +FG+DLS 
Sbjct:   730 DFSSNKNGGIYFKSLLTLDPL-SMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 534
             N+L+GEIP + G L ++ ALNLSHNNL+G IP + S+++++ES DLS+N L G+IPSQLT
Sbjct:   789 NELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLT 848

Query:   535 VLTTLAVFR 543
              LT+L+VF+
Sbjct:   849 ELTSLSVFK 857

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 2.9e-77, Sum P(2) = 2.9e-77
 Identities = 145/383 (37%), Positives = 202/383 (52%)

Query:     9 ETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPXXXXXX 68
             ETES++    PKFQLT  +L  +   G  P FL +Q +L+  +LS   LSG+ P      
Sbjct:   350 ETESNW---LPKFQLTVAALP-FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLEN 405

Query:    69 XXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR 128
                           F  F++P   H KL  LD S N   G +P  IG  LP L+  N S 
Sbjct:   406 NPELKVLQLKNNS-FTIFQIPTIVH-KLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSH 463

Query:   129 NAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKK 188
             N F G++PSS  +M  ++ LD+SYN  +GE+P  + TGCFSL  L LS+NS  G I   +
Sbjct:   464 NGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQ 523

Query:   189 FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG-NLSFLVDIIM 247
               LT+L+ L++  N F+GEI   L     L     S+N L+G I   +  + S L+ +++
Sbjct:   524 TRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLL 583

Query:   248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESV 306
              NN LEG +P     +  L  LDLS N + G LPS   +  Y  ++ L  N   G L   
Sbjct:   584 SNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVT 643

Query:   307 IPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDL 366
             + +  N   LDL  N L GSIP  ++    ++ LL  NN + G IP +LC L  ++L+DL
Sbjct:   644 LLE--NAYILDLRNNKLSGSIPQFVNTGKMITLLLRGNN-LTGSIPRKLCDLTSIRLLDL 700

Query:   367 SHNNLSGHIPPCL--VNTSLSEG 387
             S N L+G IPPCL  ++T L EG
Sbjct:   701 SDNKLNGVIPPCLNHLSTELGEG 723

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 175/466 (37%), Positives = 245/466 (52%)

Query:    83 FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADM 142
             F  F +P   H  L   D S N   G  P ++   LP L+  N S N F G  P+S  +M
Sbjct:   380 FTIFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEM 437

Query:   143 QMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN 202
             + ++ LD+SYN  +G++P    TGC S+  L LS+N   G    ++ +  +L  L++D N
Sbjct:   438 KNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNN 497

Query:   203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ 262
              F+G I   LS    L  L +S+N LSG IPRWL    +L  +++ NN LEG IP     
Sbjct:   498 LFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLG 557

Query:   263 LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
             + FL  LDLS N   G LPS         + L  N   G +   +  S  +  LDL  N 
Sbjct:   558 MPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQI--LDLRNNK 615

Query:   323 LHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNT 382
             L GSIP + D    ++ LLL  N + G IP +LC L  V+L+DLS N L+G IP CL N 
Sbjct:   616 LSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNL 674

Query:   383 SLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPM 442
             S     ++ +A              S+ +T+L     + S+      + +D +       
Sbjct:   675 SFGRLQEDAMA---------LNIPPSFLQTSLEMEL-YKST------FLVDKIEVDRSTY 718

Query:   443 GKEETIQFTTKNMSYYYQGR------ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNL 496
              +E  I+F  K     Y GR      IL  M+G+DLS N+L+G IPT++G L K+  LNL
Sbjct:   719 -QETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNL 777

Query:   497 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
             SHN+L G+IP++FS L  +ESLDLS+N+L G IP  L+ LT+LAVF
Sbjct:   778 SHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVF 823

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 183/523 (34%), Positives = 268/523 (51%)

Query:    22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPXXXXXXXXXXXXXXXXXXX 81
             QL+SI LS + + G  P FL++Q +L+  +LS+  LSG FP                   
Sbjct:   279 QLSSIMLS-HCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNS 337

Query:    82 XFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
              F +  +P  + ++L  LD+S N F   +P ++G  L  L   NLS N F G++PSS A 
Sbjct:   338 -FKTLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMAR 395

Query:   142 MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201
             M+ +  +D+SYN  +G++P  + TGC+SL  L LS+N   G I  K    T+L+TL +D 
Sbjct:   396 MENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDN 455

Query:   202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261
             N F+G+IP +L   R L  + LS+N L+G IPRWLGN  FL  + + NN L+G IP    
Sbjct:   456 NMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLF 514

Query:   262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP--NLVTLDLS 319
              + +L +LDLS N + G+LP   S  Y   + L  N + G     IPD+    L  LDL 
Sbjct:   515 NIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGS----IPDTLWYGLRLLDLR 570

Query:   320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
              N L G+IP      P +S +LL  N + G+IPV+LC L  V+++D +HN L+  IP C+
Sbjct:   571 NNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCV 629

Query:   380 VNTSL-SEGH---DEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYV 435
              N S  S GH   D    P S        Y   Y ++ +  +  FS      +   +++ 
Sbjct:   630 TNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLI-VSDRFSLDYSVDFNVQVEFA 688

Query:   436 GSRTPPMGKEETIQ--FTTKNMSYYYQGRI------LTSMFGIDLSCNKLTGEIPTQIGY 487
               +   +    T+   F     S    G I      L  +  ++LS N L+G IP     
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:   488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
             L  I +L+LS N L GTIP+  + L+ +   ++SYN L G IP
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIP 791

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.7e-63, Sum P(2) = 2.7e-63
 Identities = 143/379 (37%), Positives = 204/379 (53%)

Query:    16 SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPXXXXXXXXXXXXX 75
             S  PKFQL  I+L    +    P FL HQ DL + +LS   + G FP             
Sbjct:   352 SWKPKFQLVVIALRS-CNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVL 410

Query:    76 XXXXXXXFGSFRMPIHSHQKLATLDVSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFNGS 134
                    F SF++P  +H  L  L+VS N F  H+ ++  G  LP L+  NL+ N F G+
Sbjct:   411 LLQNNS-FTSFQLPKSAHN-LLFLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGN 467

Query:   135 IPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNL 194
             +PSS  +M+ +  LD+S+N+  G++P R   GC++L IL LS+N L G +F +  + T L
Sbjct:   468 LPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL 527

Query:   195 MTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254
               + +D N F+G I +       L  L +S+N L+G IP W+G    L  + + NN LEG
Sbjct:   528 WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEG 587

Query:   255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP--N 312
              IP     + +L++LDLS+N + G +P   S  Y   V L +N     L  VIPD+   N
Sbjct:   588 EIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNN---NLSGVIPDTLLLN 644

Query:   313 LVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
             ++ LDL  N L G++P  I+    +S LLL  N   G+IP Q C L  +QL+DLS+N  +
Sbjct:   645 VIVLDLRNNRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFN 703

Query:   373 GHIPPCLVNTS--LSEGHD 389
             G IP CL NTS  L +G D
Sbjct:   704 GSIPSCLSNTSFGLRKGDD 722

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 106/292 (36%), Positives = 150/292 (51%)

Query:    86 FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQML 145
             FR+P    + L TLD+SNN F G IP  + T L  L   +LSRN F+G IPSS  ++  L
Sbjct:   106 FRLP--QLRFLTTLDLSNNDFIGQIPSSLET-LSNLTTLDLSRNHFSGRIPSSIGNLSHL 162

Query:   146 ARLDISYNQLTGEIPERMATGCFS-LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNF 204
               +D S+N  +G+IP  +  G  S L    LS N+  G + S   +L+ L TL+L  N+F
Sbjct:   163 IFVDFSHNNFSGQIPSSL--GYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSF 220

Query:   205 SGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLR 264
              GE+P SL     L  L L  NH  G+IP  LGNLS L  I +  NN  G IP     L 
Sbjct:   221 FGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLS 280

Query:   265 FLRILDLSNNTIFGTLPSCFSPA-YIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323
              L    LS+N I G +PS F     ++ +++  NK+ G     + +   L TL L  N L
Sbjct:   281 CLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRL 340

Query:   324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375
              G++P+ +  L  L       N+  G +P  L  +  ++ I L +N L+G +
Sbjct:   341 TGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSL 392

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 140/463 (30%), Positives = 208/463 (44%)

Query:    84 GSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ 143
             GS    I     L  +D+S+N   G IP  +      L   +L  N  +G IPS    + 
Sbjct:    85 GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLV 144

Query:   144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN 203
              L  L +  N+L G IPE       +L++LAL++  L G I S+   L  L TL L  N 
Sbjct:   145 NLKSLKLGDNELNGTIPETFGN-LVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNE 203

Query:   204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQL 263
               G IP  +  C  L     + N L+G +P  L  L  L  + + +N+  G IP +   L
Sbjct:   204 LEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDL 263

Query:   264 RFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
               ++ L+L  N + G +P   +  A ++ + LS N + G +         L  L L+ N 
Sbjct:   264 VSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNR 323

Query:   323 LHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
             L GS+P  I      L  L L+   + GEIP ++   + ++L+DLS+N L+G IP  L  
Sbjct:   324 LSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQ 383

Query:   382 TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPP 441
               L E  +  +   S   G  S   S+ T   L   T + ++     P  + +       
Sbjct:   384 --LVELTNLYLNNNSLE-GTLSSSISNLTN--LQEFTLYHNNLEGKVPKEIGF------- 431

Query:   442 MGKEETIQFTTKNMSYYYQGRI--LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHN 499
             +GK E +       S      I   T +  ID   N+L+GEIP+ IG L  +  L+L  N
Sbjct:   432 LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLREN 491

Query:   500 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
              L G IP +  N  Q+  +DL+ N L G IPS    LT L +F
Sbjct:   492 ELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELF 534

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 1.5e-52, P = 1.5e-52
 Identities = 174/481 (36%), Positives = 238/481 (49%)

Query:    93 HQK-LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN-GSIPSSFADMQMLARLDI 150
             +QK L  +D+S N   G IP  +    P L    L  N+F    +P+S  ++Q+L   D 
Sbjct:   340 YQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQMPTSVHNLQVL---DF 396

Query:   151 SYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
             S N + G  P+       +L  +  SNN  QG+  S    + N+  L L  NN SGE+P+
Sbjct:   397 SENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQ 456

Query:   211 S-LSKCRRLGGLYLSDNHLSGE-IPRWLGNLSFLVDIIMPNNNL-EGLIPIEFCQLRFLR 267
             S +S C  L  L LS N  SG  +PR   N + L+ ++  NNNL  G I +    L  L 
Sbjct:   457 SFVSSCFSLSILQLSHNKFSGHFLPRQT-NFTSLI-VLRINNNLFTGKIGVGLLTLVDLC 514

Query:   268 ILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLES-----------------VIPD 309
             ILD+SNN + G LP       Y+  + LS N + G L S                  IPD
Sbjct:   515 ILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLHNNNFTGPIPD 574

Query:   310 S--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
             +   ++  LDL  N L G+IP  +D    +S+LLL  N + G IP  LC+  +++L+DLS
Sbjct:   575 TFLGSIQILDLRNNKLSGNIPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLS 633

Query:   368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427
              N L+G IP C  N S      E +     +    S Y   Y  T +             
Sbjct:   634 DNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVEN---------- 683

Query:   428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI------LTSMFGIDLSCNKLTGEI 481
               + LDY          E  ++F TK     Y G        L SM+G+DLS N+L+G I
Sbjct:   684 --FRLDYSNYF------EIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVI 735

Query:   482 PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAV 541
             P ++G L K+ ALNLSHN L+  IP +FS L+ IESLDLSYN+L G IP QLT LT+LA+
Sbjct:   736 PAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAI 795

Query:   542 F 542
             F
Sbjct:   796 F 796

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-52, P = 1.9e-52
 Identities = 163/536 (30%), Positives = 255/536 (47%)

Query:    22 QLTSISLSGYIDGGTFP-KFLYHQHDLKNANLSHLNLSGEFPXXXXXXXXXXXXXXXXXX 80
             +++ I L G    G+ P   L     L +  LS LNL+G  P                  
Sbjct:    69 EVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNS 128

Query:    81 XXFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA 140
                G   + I   +KL TL ++ N  +GHIP+EIG  L GL+E  L  N  +G IP S  
Sbjct:   129 LS-GDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGN-LSGLVELMLFDNKLSGEIPRSIG 186

Query:   141 DMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL 199
             +++ L  L    N+ L GE+P  +   C +L +L L+  SL G + +   +L  + T+ +
Sbjct:   187 ELKNLQVLRAGGNKNLRGELPWEIGN-CENLVMLGLAETSLSGKLPASIGNLKRVQTIAI 245

Query:   200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE 259
               +  SG IP+ +  C  L  LYL  N +SG IP  +G L  L  +++  NNL G IP E
Sbjct:   246 YTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQNNLVGKIPTE 305

Query:   260 FCQLRFLRILDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318
                   L ++D S N + GT+P  F     ++++ LS N+I G +   + +   L  L++
Sbjct:   306 LGNCPELWLIDFSENLLTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEI 365

Query:   319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP- 377
               N + G IP+ +  L  L+      N + G IP  L Q +E+Q IDLS+N+LSG IP  
Sbjct:   366 DNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKE 425

Query:   378 --CLVNTS----LSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYA 431
                L N +    LS      + P   +C        +  + A +  +   +     +   
Sbjct:   426 IFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDI 485

Query:   432 LD--YVGSRTPPMGKEETIQFT---TKNMSYYYQGRILT-SMFGIDLSCNKLTGEIPTQI 485
              +   VGS  P +   E+++F    T ++S    G  L  S+  ID S N L+  +P  I
Sbjct:   486 SENRLVGSIPPAISGCESLEFLDLHTNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGI 545

Query:   486 GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAV 541
             G LT++  LNL+ N L+G IP   S  + ++ L+L  N   G+IP +L  + +LA+
Sbjct:   546 GLLTELTKLNLAKNRLSGEIPREISTCRSLQLLNLGENDFSGEIPDELGQIPSLAI 601

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032745001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (749 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	543
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  202 bits (515), Expect = 5e-56
 Identities = 167/522 (31%), Positives = 247/522 (47%), Gaps = 51/522 (9%)

Query: 52  LSHLNLSGEFPNW---LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
           LS+ N S +   W      N++ + ++ L+  ++ G     I     + T+++SNN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
            IP +I T    L   NLS N F GSIP        L  LD+S N L+GEIP  +  G F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDI--GSF 163

Query: 169 S-LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
           S L++L L  N L G I +   +LT+L  L L  N   G+IP  L + + L  +YL  N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-SCFSP 286
           LSGEIP  +G L+ L  + +  NNL G IP     L+ L+ L L  N + G +P S FS 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346
             +  + LS N + G +  ++    NL  L L  N   G IP  +  LP+L  L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTS-------LSEGHDEPVAPTSSSC 399
             GEIP  L +   + ++DLS NNL+G IP  L ++         S   +  +  +  +C
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 400 GRASGYASSYTKTALNATTPFSSSCGRGYP-----YALDY--------VGSRTPPMGKEE 446
                   S  +  L   + FS      +      Y LD         + SR   M   +
Sbjct: 404 -------RSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 447 TIQFTTKNMSYYYQGRILTSMFG------IDLSCNKLTGEIPTQIGYLTKIHALNLSHNN 500
            +               L   FG      +DLS N+ +G +P ++G L+++  L LS N 
Sbjct: 456 MLSLARNKFFGG-----LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 501 LTGTIPTTFSNLKQIESLDLSYNLLHGKIP---SQLTVLTTL 539
           L+G IP   S+ K++ SLDLS+N L G+IP   S++ VL+ L
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  196 bits (500), Expect = 5e-54
 Identities = 164/520 (31%), Positives = 231/520 (44%), Gaps = 41/520 (7%)

Query: 23  LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL 82
           L++  LSG I    F         L+  NLS+ N +G  P   +    NLETL L+NN L
Sbjct: 100 LSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNML 152

Query: 83  FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADM 142
            G     I S   L  LD+  N   G IP  +   L  L    L+ N   G IP     M
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQM 211

Query: 143 QMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN 202
           + L  + + YN L+GEIP  +  G  SL  L L  N+L G I S   +L NL  L L  N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ 262
             SG IP S+   ++L  L LSDN LSGEIP  +  L  L  + + +NN  G IP+    
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 263 LRFLRILDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYN 321
           L  L++L L +N   G +P        +  + LS N + G +   +  S NL  L L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 322 CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP----- 376
            L G IP  +     L  + L +N   GE+P +  +L  V  +D+S+NNL G I      
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 377 -PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYV 435
            P L   SL+        P S    R      S  +        FS +  R         
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ--------FSGAVPRKL------- 495

Query: 436 GSRTPPMGKEETIQFT-TKNMSYYYQGRILTS---MFGIDLSCNKLTGEIPTQIGYLTKI 491
                     E +Q   ++N         L+S   +  +DLS N+L+G+IP     +  +
Sbjct: 496 ------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 531
             L+LS N L+G IP    N++ +  +++S+N LHG +PS
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  171 bits (434), Expect = 2e-45
 Identities = 159/499 (31%), Positives = 223/499 (44%), Gaps = 59/499 (11%)

Query: 21  FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
             L ++ LS  +  G  P  +     LK  +L    L G+ PN L  N T+LE L LA+N
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASN 198

Query: 81  SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA 140
            L G     +   + L  + +  N   G IP EIG  L  L   +L  N   G IPSS  
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLG 257

Query: 141 DMQMLARLDISYNQLTGEIPERMATGCFSLE---ILALSNNSLQGHIFSKKFSLTNLMTL 197
           +++ L  L +  N+L+G IP  +    FSL+    L LS+NSL G I      L NL  L
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSI----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257
            L  NNF+G+IP +L+   RL  L L  N  SGEIP+ LG  + L  + +  NNL G IP
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSPA-YIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
              C    L  L L +N++ G +P        + +V L  N   G L S     P +  L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 317 DLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           D+S N L G I +R   +P L  L LA N   G +P      K ++ +DLS N  SG +P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVP 492

Query: 377 ------PCLVNTSLSEGHDEPVAPTS-SSCGRASGYASSYTKTALNATTPFSSSCGRGYP 429
                   L+   LSE       P   SSC +      S+ +  L+   P S S      
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ--LSGQIPASFS------ 544

Query: 430 YALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT 489
                     P + +                         +DLS N+L+GEIP  +G + 
Sbjct: 545 --------EMPVLSQ-------------------------LDLSQNQLSGEIPKNLGNVE 571

Query: 490 KIHALNLSHNNLTGTIPTT 508
            +  +N+SHN+L G++P+T
Sbjct: 572 SLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  169 bits (429), Expect = 9e-45
 Identities = 125/356 (35%), Positives = 183/356 (51%), Gaps = 5/356 (1%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           ++ SI LSG    G     ++    ++  NLS+  LSG  P+ +   +++L  L L+NN+
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
             GS  +P  S   L TLD+SNN   G IP +IG++   L   +L  N   G IP+S  +
Sbjct: 130 FTGS--IPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTN 186

Query: 142 MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201
           +  L  L ++ NQL G+IP  +     SL+ + L  N+L G I  +   LT+L  L L  
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261
           NN +G IP SL   + L  L+L  N LSG IP  + +L  L+ + + +N+L G IP    
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQV-HLSKNKIEGRLESVIPDSPNLVTLDLSY 320
           QL+ L IL L +N   G +P   +     QV  L  NK  G +   +    NL  LDLS 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           N L G IP  +     L  L+L +N +EGEIP  L   + ++ + L  N+ SG +P
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  105 bits (264), Expect = 8e-24
 Identities = 93/326 (28%), Positives = 139/326 (42%), Gaps = 66/326 (20%)

Query: 222 YLSDNHLSGEIPRWLG----NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
           YLS+ + S ++  W G    N S +V I +   N+ G I     +L +++ ++LSNN + 
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQL 337
           G +P                      + +   S +L  L+LS N   GSIP     +P L
Sbjct: 107 GPIP----------------------DDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142

Query: 338 SYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSS 397
             L L+NN + GEIP  +     ++++DL  N L G IP  L N                
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--------------- 187

Query: 398 SCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMS- 456
                         T+L   T  S+      P  L         M   + I     N+S 
Sbjct: 188 --------------TSLEFLTLASNQLVGQIPRELG-------QMKSLKWIYLGYNNLSG 226

Query: 457 -YYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQI 515
              Y+   LTS+  +DL  N LTG IP+ +G L  +  L L  N L+G IP +  +L+++
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 516 ESLDLSYNLLHGKIPSQLTVLTTLAV 541
            SLDLS N L G+IP  +  L  L +
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEI 312

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 32/70 (45%), Positives = 46/70 (65%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+ +  + LS NKL+GEIP ++    K+ +L+LSHN L+G IP +FS +  +  LDLS N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 524 LLHGKIPSQL 533
            L G+IP  L
Sbjct: 558 QLSGEIPKNL 567

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 29/71 (40%), Positives = 41/71 (57%)

Query: 469 GIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528
           G+ L    L G IP  I  L  + ++NLS N++ G IP +  ++  +E LDLSYN  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 529 IPSQLTVLTTL 539
           IP  L  LT+L
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 75  LLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGS 134
           L L N  L G     I   + L ++++S N  +G+IP  +G+ +  L   +LS N+FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 135 IPSSFADMQMLARLDISYNQLTGEIP 160
           IP S   +  L  L+++ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256
           L LD     G IP  +SK R L  + LS N + G IP  LG+++ L  + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 257 PIEFCQLRFLRILDLSNNTIFGTLPS 282
           P    QL  LRIL+L+ N++ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 265 FLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323
           F+  L L N  + G +P+  S   +++ ++LS N I G +   +    +L  LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQL 355
           +GSIP  + +L  L  L L  N + G +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 99  LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE 158
           L + N   +G IP +I + L  L   NLS N+  G+IP S   +  L  LD+SYN   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 159 IPERMATGCFSLEILALSNNSLQGHI 184
           IPE +     SL IL L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 11/103 (10%)

Query: 446 ETIQFTTKNMSYYYQGRILT---SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502
           +TI  +   +S      I T   S+  ++LS N  TG IP   G +  +  L+LS+N L+
Sbjct: 96  QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS 153

Query: 503 GTIPT---TFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF 542
           G IP    +FS+LK    LDL  N+L GKIP+ LT LT+L   
Sbjct: 154 GEIPNDIGSFSSLK---VLDLGGNVLVGKIPNSLTNLTSLEFL 193

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           I+LS N + G IP  +G +T +  L+LS+N+  G+IP +   L  +  L+L+ N L G++
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 530 PSQL 533
           P+ L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 153 NQ-LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES 211
           NQ L G IP  ++     L+ + LS NS++G+I     S+T+L  L L  N+F+G IPES
Sbjct: 427 NQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 212 LSKCRRLGGLYLSDNHLSGEIPRWLG 237
           L +   L  L L+ N LSG +P  LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI 375
           L L    L G IPN I +L  L  + L+ N I G IP  L  +  ++++DLS+N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 376 PPCL 379
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 51/92 (55%)

Query: 288 YIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI 347
           +I+ + L    + G + + I    +L +++LS N + G+IP  +  +  L  L L+ N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 348 EGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
            G IP  L QL  +++++L+ N+LSG +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 32/85 (37%), Positives = 44/85 (51%)

Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
           L L N  L+G I +    L +L ++ L GN+  G IP SL     L  L LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIP 257
           P  LG L+ L  + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 4/203 (1%)

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
           ++  LAL+ +S    +     S    + L       S +  E+L     L  L L+ N L
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAY 288
              I   L  L+ L  + + NNN+  + P+       L+ LDLS+N I        +   
Sbjct: 106 RSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN 164

Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348
           ++ + LS N +   L  ++ +  NL  LDLS N +   +P  I+ L  L  L L+NN I 
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222

Query: 349 GEIPVQLCQLKEVQLIDLSHNNL 371
            E+   L  LK +  ++LS+N L
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
           +DLS N+LT         L  +  L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 28/74 (37%), Positives = 37/74 (50%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L  NK +GEIP  +G    +  L+LS NNLTG IP    +   +  L L  N L G+I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 530 PSQLTVLTTLAVFR 543
           P  L    +L   R
Sbjct: 397 PKSLGACRSLRRVR 410

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 68/249 (27%), Positives = 98/249 (39%), Gaps = 32/249 (12%)

Query: 68  NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127
            N      L  N +   S    +     L +LD+ NN     IP  IG     L E +LS
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 128 RNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
            N    S+PS   ++  L  LD+S+N L+                           +   
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS--------------------------DLPKL 181

Query: 188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
             +L+NL  L L GN  S ++P  +     L  L LS+N +  E+   L NL  L  + +
Sbjct: 182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307
            NN LE  +P     L  L  LDLSNN I  ++ S  S   + ++ LS N +   L  + 
Sbjct: 240 SNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 308 PDSPNLVTL 316
                L  L
Sbjct: 298 LLLLLLELL 306

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 59/266 (22%), Positives = 88/266 (33%), Gaps = 54/266 (20%)

Query: 90  IHSHQKLATLDVSNNFFQG-----HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQM 144
           +     L  L +S N            ++  T   GL E +LS NA             +
Sbjct: 47  LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL------GPDGCGV 100

Query: 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLT----NLMTLQL 199
           L  L                    SL+ L L+NN L           L      L  L L
Sbjct: 101 LESL----------------LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 200 DGNNFSGEIPESLSK----CRRLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNN 251
             N   G   E+L+K     R L  L L++N +       +   L     L  + + NN 
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

Query: 252 L--EGLIPIEFC--QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVH------LSKNKIE- 300
           L  EG   +      L+ L +L+L +N +     +  + A +          LS N I  
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

Query: 301 ---GRLESVIPDSPNLVTLDLSYNCL 323
                L  V+ +  +L+ LDL  N  
Sbjct: 265 DGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 491 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAV 541
           I  L L +  L G IP   S L+ ++S++LS N + G IP  L  +T+L V
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
            L +  L G  PN  +    +L+++ L+ NS+ G+    + S   L  LD+S N F G I
Sbjct: 424 GLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSS 138
           P  +G  L  L   NL+ N+ +G +P++
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 95  KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154
            L +LD+SNN     IP      LP L   +LS N      P +F+ +  L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 155 L 155
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 169 SLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
           +L+ L LSNN L   I    F  L NL  L L GNN +   PE+ S    L  L LS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 228 L 228
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP 506
           +TS+  +DLS N   G IP  +G LT +  LNL+ N+L+G +P
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI 347
           + LS N++    +      PNL  LDLS N L    P     LP L  L L+ N +
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 22  QLTSISLSGYIDG---------GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNL 72
           Q  S     +IDG         G  P  +     L++ NLS  ++ G  P  L  + T+L
Sbjct: 410 QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSL 468

Query: 73  ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132
           E L L+ NS  GS    +     L  L+++ N   G +P  +G  L     FN + NA  
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528

Query: 133 GSIP 136
             IP
Sbjct: 529 CGIP 532

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 37/218 (16%)

Query: 189 FSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLSGEIPR-------WLG 237
             L  L  L+L+GN    E    +  +L     L  L LS N   G IPR        L 
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLT 78

Query: 238 NLSFLVDIIMPNNNLEGLIP---IEFCQLRFLRILDLSNN--------TIFGTLPSCFSP 286
               L ++ + +N L            +   L+ L L+NN         +   L      
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 287 AYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGSIPNRIDR----LPQLS 338
              E++ L +N++EG     L   +  + +L  L+L+ N +  +    +         L 
Sbjct: 139 L--EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 339 YLLLANNYIEGEIPVQLC----QLKEVQLIDLSHNNLS 372
            L L NN +  E    L      LK +++++L  NNL+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           NL +L L  N  +     +      L  L LS N+L+   P     L  L  + +  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	543
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PLN03150	623	hypothetical protein; Provisional	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
PLN03150	623	hypothetical protein; Provisional	98.89
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG4341	483	consensus F-box protein containing LRR [General fu	98.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG4341	483	consensus F-box protein containing LRR [General fu	98.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.86
KOG4308	478	consensus LRR-containing protein [Function unknown	93.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.49
KOG4308	478	consensus LRR-containing protein [Function unknown	93.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.83
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.71
smart00370	26	LRR Leucine-rich repeats, outliers.	89.71
smart00370	26	LRR Leucine-rich repeats, outliers.	89.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.28

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-48  Score=431.60  Aligned_cols=498  Identities=32%  Similarity=0.452  Sum_probs=367.2

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      +++.|+|+++.+.+..+..+..+++|++|++++|.+.+.+|..++..+.+|++|++++|++.+..|.  ..+++|++|++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L  147 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL  147 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence            7999999999999888888889999999999999998888988877889999999999988776663  46788899999


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ  181 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  181 (543)
                      ++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus       148 s~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        148 SNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLS  225 (968)
T ss_pred             cCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccC
Confidence            888887777777766 88889999988888777888888888888888888888766776554 4888888888888888


Q ss_pred             CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccccc
Q 040468          182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC  261 (543)
Q Consensus       182 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  261 (543)
                      +..+..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..|..+.
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            77777888888888888888888777788888888888888888888777777788888888888888888877787788


Q ss_pred             CCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEE
Q 040468          262 QLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYL  340 (543)
Q Consensus       262 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L  340 (543)
                      .+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|.++..+++|+.|
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            88888888888888776655443 37788888888888877777777778888888888888877777777777888888


Q ss_pred             EccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCC----CCC---CCCCCCCCCCCCCccccccccc
Q 040468          341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGH----DEP---VAPTSSSCGRASGYASSYTKTA  413 (543)
Q Consensus       341 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~c~~~~~~~~~~~~~~  413 (543)
                      ++.+|++.+..|..+..+++|+.|++++|++.+..|..+..++.....    +..   .......++.+.......+...
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence            888888877777777788888888888888877777666554432210    000   0001112222222222222110


Q ss_pred             cCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCceeEEEcccCccccccChhhhccccc
Q 040468          414 LNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSMFGIDLSCNKLTGEIPTQIGYLTKI  491 (543)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L  491 (543)
                      .....                    ......++.+.+....+.....  ...+++|++|++++|.+++..|..+..+++|
T Consensus       466 ~~~p~--------------------~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        466 GGLPD--------------------SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             eecCc--------------------ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence            00000                    0001122223322222221111  1125677788888888777777777778888


Q ss_pred             CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468          492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR  543 (543)
Q Consensus       492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~  543 (543)
                      ++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|+
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            8888888888877787788888888888888888777777777777777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.1e-47  Score=423.28  Aligned_cols=491  Identities=31%  Similarity=0.434  Sum_probs=398.6

Q ss_pred             CCCCceeEEEeeCCCCCCCcchhcc-CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC
Q 040468           18 TPKFQLTSISLSGYIDGGTFPKFLY-HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL   96 (543)
Q Consensus        18 ~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L   96 (543)
                      ....+|+.|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|.   ..+++|++|++++|.+.+..|..+..+++|
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            3455899999999999988887765 899999999999999888885   458899999999999988889999999999


Q ss_pred             CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468           97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS  176 (543)
Q Consensus        97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  176 (543)
                      ++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|+++
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~  244 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLV  244 (968)
T ss_pred             CEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECc
Confidence            99999999988788888877 89999999999999888999999999999999999999877887665 49999999999


Q ss_pred             CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468          177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI  256 (543)
Q Consensus       177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  256 (543)
                      +|.+.+..+..+..+++|+.|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence            99998888888999999999999999998888888999999999999999998888888999999999999999998888


Q ss_pred             cccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCC
Q 040468          257 PIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLP  335 (543)
Q Consensus       257 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~  335 (543)
                      |..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++
T Consensus       325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  404 (968)
T PLN00113        325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR  404 (968)
T ss_pred             ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence            8889999999999999999887666544 378899999999999887777777888999999999999888888888999


Q ss_pred             CCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCC------CCCCCCCCCCCCCCCCCccccc
Q 040468          336 QLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEG------HDEPVAPTSSSCGRASGYASSY  409 (543)
Q Consensus       336 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~c~~~~~~~~~~  409 (543)
                      +|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..++.++....      ......+.......+.......
T Consensus       405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~  484 (968)
T PLN00113        405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR  484 (968)
T ss_pred             CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence            9999999999998888888889999999999999988877765554442221      1111111111111111111111


Q ss_pred             cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc--cccCceeEEEcccCccccccChhhhc
Q 040468          410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG--RILTSMFGIDLSCNKLTGEIPTQIGY  487 (543)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~~l~~  487 (543)
                      +.-            .+       ..+........+..+.+..+.+....+.  ..+++|++|+|++|.+++..|..+..
T Consensus       485 n~l------------~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  545 (968)
T PLN00113        485 NQF------------SG-------AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE  545 (968)
T ss_pred             Ccc------------CC-------ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence            110            00       0001111122233333333333222211  22789999999999999999999999


Q ss_pred             ccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc
Q 040468          488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ  532 (543)
Q Consensus       488 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  532 (543)
                      +++|++|+|++|++.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            999999999999999999999999999999999999999988864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-37  Score=290.81  Aligned_cols=395  Identities=23%  Similarity=0.223  Sum_probs=276.2

Q ss_pred             CEEeccCCcccccCChhhhh-cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEc
Q 040468           48 KNANLSHLNLSGEFPNWLVE-NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNL  126 (543)
Q Consensus        48 ~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L  126 (543)
                      +.|+.++..+....-..+.+ -...-+.|++++|++....+..|.++++|+.+.+.+|.++ .+|..... ..+|+.|+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEee
Confidence            44666666553211111101 1234566888888887777777788888888888888877 77766655 567888888


Q ss_pred             CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCc
Q 040468          127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG  206 (543)
Q Consensus       127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~  206 (543)
                      .+|.|++.-.+.+..++.|+.|||+.|.+. .++..-+..-.++++|+|++|+|+......|..+.+|..|.++.|.++.
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence            888887766777777888888888888877 7776666555678888888888877777777777788888888888775


Q ss_pred             cCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC-CCC
Q 040468          207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS-CFS  285 (543)
Q Consensus       207 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~  285 (543)
                      .-+..|..+++|+.|++..|.+...---.|+++++|+.+.+..|.+...-...|..+.+++.|++..|.+...-.. .+.
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence            5556677778888888887777643344567777777777777777766556677777777888877777655443 344


Q ss_pred             cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEe
Q 040468          286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID  365 (543)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  365 (543)
                      +.+|+.|+++.|.|.......++.+++|++|+++.|+++...+..|..+..|+.|+|+.|.+...-...|..+++|++||
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            77777777777777777666677777777788877777766667777777777777777777755556677777777777


Q ss_pred             CCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCc
Q 040468          366 LSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE  445 (543)
Q Consensus       366 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (543)
                      ++.|.++..+.+.-..+                                                               
T Consensus       372 Lr~N~ls~~IEDaa~~f---------------------------------------------------------------  388 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAF---------------------------------------------------------------  388 (873)
T ss_pred             CcCCeEEEEEecchhhh---------------------------------------------------------------
Confidence            77777764333211000                                                               


Q ss_pred             cceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468          446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  525 (543)
                                    .+  +++|+.|+|.+|++....-..|..+++|++|||.+|.|..+.|++|..+ +|+.|.+..-.+
T Consensus       389 --------------~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  389 --------------NG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             --------------cc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence                          00  5677777777777773333567777777777777777777777777776 777777665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9e-37  Score=291.06  Aligned_cols=385  Identities=24%  Similarity=0.264  Sum_probs=302.5

Q ss_pred             CcEEEccCCcccccCCCCCcCC--CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEe
Q 040468           72 LETLLLANNSLFGSFRMPIHSH--QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLD  149 (543)
Q Consensus        72 L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~  149 (543)
                      -+.|+.++..+.......+.++  +.-+.|++++|.+. .+....+..+++|+.+++.+|.++ .+|....-..+|+.|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            4556677766643322333332  34556899999888 555555555889999999999888 6676555566789999


Q ss_pred             cccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468          150 ISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       150 L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  229 (543)
                      |.+|.+. .+..+....++.|+.|||+.|.+.......+..-.++++|++++|.++......|..+.+|..+.++.|+++
T Consensus       132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            9999888 666666666888999999999888776667766778999999999988777788888889999999999988


Q ss_pred             CcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCC
Q 040468          230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIP  308 (543)
Q Consensus       230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~  308 (543)
                      ...+..|.+++.|+.|++..|.+....--.|..+++|+.+.+..|.+.+..+..|. +.+++.|++..|++...-..++.
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            66667788899999999988888755445678888999999999988877666554 88899999999988877677778


Q ss_pred             CCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCC
Q 040468          309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGH  388 (543)
Q Consensus       309 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  388 (543)
                      ++..|+.|++++|.|....++.+..+++|+.|+|+.|+|+...+..|..+.+|++|.+++|++.......|..       
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-------  363 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-------  363 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-------
Confidence            8889999999999988888888888899999999999998767778888899999999999885322222221       


Q ss_pred             CCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCcee
Q 040468          389 DEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMF  468 (543)
Q Consensus       389 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  468 (543)
                                                                                                 +.+|+
T Consensus       364 ---------------------------------------------------------------------------lssL~  368 (873)
T KOG4194|consen  364 ---------------------------------------------------------------------------LSSLH  368 (873)
T ss_pred             ---------------------------------------------------------------------------hhhhh
Confidence                                                                                       56888


Q ss_pred             EEEcccCcccccc---ChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          469 GIDLSCNKLTGEI---PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       469 ~L~ls~n~l~~~~---~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      +|||++|.++..+   ...|..+++|+.|++.+|++..+.-.+|..+.+|++||+-+|.|.+.=|..|..| .||+|
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence            9999999876444   3457779999999999999986666788999999999999999987778888887 77765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=1.8e-36  Score=276.90  Aligned_cols=392  Identities=25%  Similarity=0.391  Sum_probs=259.7

Q ss_pred             cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhc
Q 040468           37 FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGT  116 (543)
Q Consensus        37 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~  116 (543)
                      +|+++....+++.++.+.+.+. ++++.+ ..+..++.++-.+|++ ...|.++.++.+|..+++.+|.++ ..|.....
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~  181 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA  181 (565)
T ss_pred             ccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence            4444455555555555555554 444443 4555566666666665 345556666677777777777776 55555544


Q ss_pred             CCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCE
Q 040468          117 YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT  196 (543)
Q Consensus       117 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  196 (543)
                       ++.|++||...|-++ .+|..++.+.+|..|++..|++. .+|.  |.+|..|+++.++.|.+.-.......+++++..
T Consensus       182 -m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 -MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             -HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence             667777777776665 67777777777777888888777 6662  445777888888887776544455557788888


Q ss_pred             EeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccc-----------------
Q 040468          197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE-----------------  259 (543)
Q Consensus       197 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------  259 (543)
                      ||+.+|++. ..|+.++.+.+|.+|++++|.++ .+|..++++ +|+.|-+.+|.+.++-.+.                 
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~  333 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK  333 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence            888888877 66777777888888888888887 667777777 7888888887654220000                 


Q ss_pred             ------------------------ccCCCCCcEEEccCCcCccCCCCCCCcc---cccEEEcCCCccccccCCCCCCCCC
Q 040468          260 ------------------------FCQLRFLRILDLSNNTIFGTLPSCFSPA---YIEQVHLSKNKIEGRLESVIPDSPN  312 (543)
Q Consensus       260 ------------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~  312 (543)
                                              ...+...+.|++++-+++..+...|...   -+..+++++|++... +..+..++.
T Consensus       334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lke  412 (565)
T KOG0472|consen  334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKE  412 (565)
T ss_pred             cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHH
Confidence                                    0112234444444444444433333321   245556666665433 222333333


Q ss_pred             c-cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468          313 L-VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP  391 (543)
Q Consensus       313 L-~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  391 (543)
                      + +.+.+++|.+. .+|..+..+++|..|++++|.+. .+|..+..+..|+.|+++.|++. ..|.++..          
T Consensus       413 lvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~----------  479 (565)
T KOG0472|consen  413 LVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE----------  479 (565)
T ss_pred             HHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh----------
Confidence            3 23445555554 66777788888888888888877 67777888888888888888875 45544332          


Q ss_pred             CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468          392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID  471 (543)
Q Consensus       392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  471 (543)
                                                                                              +..++.+.
T Consensus       480 ------------------------------------------------------------------------lq~lEtll  487 (565)
T KOG0472|consen  480 ------------------------------------------------------------------------LQTLETLL  487 (565)
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    34566677


Q ss_pred             cccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468          472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      .++|++...-|.++.++.+|++||+.+|.+. .+|..++++.+|++|+++||++.+
T Consensus       488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            7778888434455999999999999999998 788899999999999999999983

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=3.4e-35  Score=268.52  Aligned_cols=429  Identities=25%  Similarity=0.337  Sum_probs=295.9

Q ss_pred             ccCCCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcC
Q 040468           13 HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHS   92 (543)
Q Consensus        13 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~   92 (543)
                      +...||....++.+.++++.+. .+.+.+.++..+.++++.++..+ ..|.++ ..+..++.++.+++++ ..+|..+..
T Consensus        37 e~e~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~l-s~lp~~i~s  112 (565)
T KOG0472|consen   37 EGENWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKL-SELPEQIGS  112 (565)
T ss_pred             chhhhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchH-hhccHHHhh
Confidence            3455665567888899988887 44556788899999999999887 667665 6778888889998887 567788888


Q ss_pred             CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCE
Q 040468           93 HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI  172 (543)
Q Consensus        93 ~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~  172 (543)
                      ...|+.+++++|.+. +++.++++ +-.++.++..+|++. ..|.++.++.+|..+++.+|.+. ..|..... ++.|++
T Consensus       113 ~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~  187 (565)
T KOG0472|consen  113 LISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKH  187 (565)
T ss_pred             hhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHh
Confidence            888999999988888 88888887 678888888888887 56777777778888888888877 66666555 777777


Q ss_pred             EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccc-cCCCCCcEEEccCCc
Q 040468          173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPNNN  251 (543)
Q Consensus       173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~  251 (543)
                      ++...|.+. ..|..++.+.+|+.|++..|++. ..| .|.++..|+.+.++.|.+. .+|+.. ..++++..|++.+|+
T Consensus       188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk  263 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK  263 (565)
T ss_pred             cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence            777777665 45666777777777777777766 455 4666666777766666665 344433 356666677777766


Q ss_pred             ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-----------------------------
Q 040468          252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-----------------------------  302 (543)
Q Consensus       252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------------------  302 (543)
                      +.. .|..+..+.+|++||+++|.+++.......+ +|+.|-+.||.+...                             
T Consensus       264 lke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se  341 (565)
T KOG0472|consen  264 LKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE  341 (565)
T ss_pred             ccc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence            663 3555566666677777777666555444444 566666665543100                             


Q ss_pred             ---------cCC---CCCCCCCccEEEccccccccccCccCCCCCC---CCEEEccCcccc-------------------
Q 040468          303 ---------LES---VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ---LSYLLLANNYIE-------------------  348 (543)
Q Consensus       303 ---------~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~---L~~L~l~~n~i~-------------------  348 (543)
                               ...   ......+.+.|++++-+++ .+|..+....+   ...+++++|++.                   
T Consensus       342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS  420 (565)
T ss_pred             ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence                     000   0111234455555555555 23322211111   444455554443                   


Q ss_pred             ----cccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCC
Q 040468          349 ----GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSC  424 (543)
Q Consensus       349 ----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  424 (543)
                          +.+|..++.+++|..|++++|.+. .+|.++..                                           
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~-------------------------------------------  456 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS-------------------------------------------  456 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccchhh-hcchhhhh-------------------------------------------
Confidence                134455556666666666666554 34433322                                           


Q ss_pred             CCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccc
Q 040468          425 GRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT  504 (543)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~  504 (543)
                                                             +..|++||+++|++. ..|..+-.+..|+.+-.++|++..+
T Consensus       457 ---------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  457 ---------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             ---------------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence                                                   456889999999888 7888887778888888888999877


Q ss_pred             cChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          505 IPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       505 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      .|..+.++.+|.+||+.+|.+. ++|..+++|++|++|
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL  533 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL  533 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE
Confidence            8888999999999999999999 778889999999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.8e-34  Score=273.97  Aligned_cols=317  Identities=26%  Similarity=0.339  Sum_probs=214.1

Q ss_pred             ceeEEEeeCCCCCCC-cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           22 QLTSISLSGYIDGGT-FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      -++-.|+++|.+.|. +|..+..+.+++.|.|.+.++. .+|+.+ +.+.+|+.|.+++|++... -..+..++.||.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence            378889999999854 8988999999999999998886 788886 8899999999999987433 34577889999999


Q ss_pred             cCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468          101 VSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS  179 (543)
Q Consensus       101 ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  179 (543)
                      +++|.+.. -+|..+++ +..|..|||++|++. ..|..+.+-+++-.|+|++|++. .+|..++..+..|-.|++++|+
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            99988764 47888888 888999999999988 67888888888889999999888 8888888777777777777776


Q ss_pred             CCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc-ccCcc
Q 040468          180 LQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE-GLIPI  258 (543)
Q Consensus       180 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~  258 (543)
                      +. ..|+.+..+..|++|.+++|.+...                        ....+..+++|+.|.+++.+-+ .-+|.
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhhcCCC
Confidence            65 3344445555555555555554422                        2222333444444444444322 22344


Q ss_pred             cccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCC
Q 040468          259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLS  338 (543)
Q Consensus       259 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~  338 (543)
                      .+..+.+|..++++.|.+...+...+..++|+.|++++|+++.. ........+|+.|+++.|+++ ..|.++..+++|+
T Consensus       217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            55555566666666665554444444455555555555555432 122233456777777777776 6666677777777


Q ss_pred             EEEccCccccc-ccchhhhCCCCCCEEeCCCCcc
Q 040468          339 YLLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       339 ~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      .|.+.+|+++- -+|..+..+.+|+.+...+|.+
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            77777666652 2455555555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.7e-33  Score=266.65  Aligned_cols=340  Identities=24%  Similarity=0.299  Sum_probs=222.2

Q ss_pred             CCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccc-ccCCCCCcCCCCCCE
Q 040468           20 KFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLF-GSFRMPIHSHQKLAT   98 (543)
Q Consensus        20 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~   98 (543)
                      ..+++.|.|...++. .+|+.+..+.+|++|.++.|++.....+  ...++.|+.+.+++|++. ..+|..+-.+..|+.
T Consensus        31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE--Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE--LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh--hccchhhHHHhhhccccccCCCCchhccccccee
Confidence            348999999999988 7899999999999999999998744443  478899999999999873 446667788999999


Q ss_pred             EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468           99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN  178 (543)
Q Consensus        99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n  178 (543)
                      ||||+|.++ +.|..+-. -+++-.|+|++|+|..+...-+.++..|-+|||++|.+. .+|..+.. +..|+.|.+++|
T Consensus       108 lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNN  183 (1255)
T ss_pred             eecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCC
Confidence            999999999 99988866 689999999999998544456778999999999999998 88887765 889999999999


Q ss_pred             cCCCcCcccccCCCCcCEEeCCCCccC-ccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCc
Q 040468          179 SLQGHIFSKKFSLTNLMTLQLDGNNFS-GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP  257 (543)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  257 (543)
                      .+.......+-.+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|..+.++++|+.|++++|.++.. .
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~  261 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-N  261 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-e
Confidence            987655555556667777777776543 234555555555555555555554 4445555555555555555555422 2


Q ss_pred             ccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-cCCCCCCCCCccEEEccccccccccCccCCCCCC
Q 040468          258 IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ  336 (543)
Q Consensus       258 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~  336 (543)
                      .......+|+.|+++.|+++..+.....+++|+.|.+.+|+++-. ++..++++.+|+.+..++|.+. .+|..+..|++
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence            222333445555555555443333333344444444444443311 2223344444444444444443 44444444444


Q ss_pred             CCEEEccCcccccccchhhhCCCCCCEEeCCCCc
Q 040468          337 LSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN  370 (543)
Q Consensus       337 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  370 (543)
                      |+.|.|+.|++. .+|+++.-++.|+.||+..|+
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            444444444443 344444444444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-31  Score=268.09  Aligned_cols=453  Identities=26%  Similarity=0.314  Sum_probs=336.5

Q ss_pred             EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468           25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN  104 (543)
Q Consensus        25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~  104 (543)
                      ++|++.++++ .+|..+..-..+..|++..|.+. ..|-.+..+.-+|+.|+++++.+ +..|..+..+.+|+.|+++.|
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchh
Confidence            4677777777 56766666566999999999776 44455556777799999999987 677888999999999999999


Q ss_pred             ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468          105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI  184 (543)
Q Consensus       105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  184 (543)
                      .+. ..|..... +.+|++|.|.+|... ..|..+..+++|++|+++.|.+. .+|.-+.. +..+.++..++|....  
T Consensus        79 ~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~--  151 (1081)
T KOG0618|consen   79 YIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQ--  151 (1081)
T ss_pred             hHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHh-hhHHHHHhhhcchhhh--
Confidence            998 88877777 889999999999988 78999999999999999999998 88876664 7788888899883221  


Q ss_pred             cccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCC
Q 040468          185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLR  264 (543)
Q Consensus       185 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  264 (543)
                        .++... ++.+++..+.+...++.....++.  .+++.+|.+.   ...+..+++|+.+....|.+....-    .-+
T Consensus       152 --~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~  219 (1081)
T KOG0618|consen  152 --RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGP  219 (1081)
T ss_pred             --hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCc
Confidence              222222 778888888877666666666555  6999999886   3346788899999999888775422    346


Q ss_pred             CCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccC
Q 040468          265 FLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLAN  344 (543)
Q Consensus       265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~  344 (543)
                      +++.|+.++|.+. .....+.+..++.++++.+++++.+ .++..+.+|+.++...|.++ ..|..+....+|+.|.+..
T Consensus       220 ~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  220 SLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             chheeeeccCcce-eeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence            7999999999988 5555666889999999999998766 88999999999999999997 8888888999999999999


Q ss_pred             cccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCC-CCCCCCCCCCCCCCCCCCccccccccccCCccCCCCC
Q 040468          345 NYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE-GHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSS  423 (543)
Q Consensus       345 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  423 (543)
                      |.+. .+|......+.|++|++..|.+. ..|+-+....... ...+      .+|..++.+                 .
T Consensus       297 nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln------~s~n~l~~l-----------------p  351 (1081)
T KOG0618|consen  297 NELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN------VSSNKLSTL-----------------P  351 (1081)
T ss_pred             hhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh------hhhcccccc-----------------c
Confidence            9998 67777788999999999999986 5665333322110 0000      000000000                 0


Q ss_pred             CCCCCcccccccCCCCCCCCCccceeeeccCCcc--cccccccCceeEEEcccCccccccC-hhhhcccccCeeeCcCCc
Q 040468          424 CGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY--YYQGRILTSMFGIDLSCNKLTGEIP-TQIGYLTKIHALNLSHNN  500 (543)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~  500 (543)
                      +.++...            ..+..+..+.+.+.+  .-......+|+.|+|++|++. .+| ..+.+++.|++|+||+|.
T Consensus       352 ~~~e~~~------------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  352 SYEENNH------------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             cccchhh------------HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccch
Confidence            0000000            000000000000000  000011678999999999999 666 457889999999999999


Q ss_pred             cccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468          501 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR  543 (543)
Q Consensus       501 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~  543 (543)
                      ++ .+|+.+..++.|++|...+|.+. ..| .+..+++|+.++
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            99 88899999999999999999998 666 578888887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-29  Score=254.33  Aligned_cols=398  Identities=26%  Similarity=0.334  Sum_probs=231.5

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      +|++|+++++.+. .+|..+..+.+|+.|++++|-+. .+|... .++++|+++.|.++.. ...|.++..+++|++|++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l-~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRL-QSLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchh-hcCchhHHhhhccccccc
Confidence            5777777777666 55666777777777777777665 555443 6677777777777765 566667777777777777


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCC-------------------cCccCCchhhcCCCCCCEEecccccccccCchH
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRN-------------------AFNGSIPSSFADMQMLARLDISYNQLTGEIPER  162 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~-------------------~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~  162 (543)
                      +.|.+. .+|.-+.. +..++.+..++|                   .+.+.++.++..++.  .|+|.+|.+. ...  
T Consensus       122 S~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--  194 (1081)
T KOG0618|consen  122 SFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--  194 (1081)
T ss_pred             chhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh--
Confidence            777665 55544433 444444444444                   222222222222222  2444444333 111  


Q ss_pred             hhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCC
Q 040468          163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL  242 (543)
Q Consensus       163 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  242 (543)
                       ...+++|+.+....|++...    --..++++.|+...|.++...+  -.-..+|++++++.+.+. ..|.|+..+.+|
T Consensus       195 -ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nl  266 (1081)
T KOG0618|consen  195 -LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANL  266 (1081)
T ss_pred             -hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccc
Confidence             11123333333333322211    0113344455555554442211  122346777777777766 445777777777


Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCC-----------------
Q 040468          243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLES-----------------  305 (543)
Q Consensus       243 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------  305 (543)
                      +.+....|.+. ..|..+....+|+.+.+..|.+...++.....++|++|++..|.+...+..                 
T Consensus       267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n  345 (1081)
T KOG0618|consen  267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN  345 (1081)
T ss_pred             eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence            77777777664 334445555556666666666554333333355666666666555322211                 


Q ss_pred             --------CCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCC
Q 040468          306 --------VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP  377 (543)
Q Consensus       306 --------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  377 (543)
                              .-...+.|+.|.+.+|.+++.....+.+++.|+.|+|++|++.......+.+++.|+.|++|||++. .+|.
T Consensus       346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~  424 (1081)
T KOG0618|consen  346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD  424 (1081)
T ss_pred             cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence                    1112356777888888888766667788888888888888887444456778888888888888885 4554


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc
Q 040468          378 CLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY  457 (543)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (543)
                      +...                                                                            
T Consensus       425 tva~----------------------------------------------------------------------------  428 (1081)
T KOG0618|consen  425 TVAN----------------------------------------------------------------------------  428 (1081)
T ss_pred             HHHh----------------------------------------------------------------------------
Confidence            4433                                                                            


Q ss_pred             cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcC
Q 040468          458 YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       458 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i  525 (543)
                            ++.|++|...+|++. .+| .+..++.|+.+|+|.|.++... |+.... ++|+.||++||.-
T Consensus       429 ------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  429 ------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             ------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence                  446677777777777 566 5777777777777777776432 222211 6777777777764

>PLN03210 Resistant to P

Probab=99.93  E-value=4.6e-24  Score=238.56  Aligned_cols=342  Identities=22%  Similarity=0.233  Sum_probs=224.4

Q ss_pred             CCCCcCCCCCCEEEcCCCcc------ccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCc
Q 040468           87 RMPIHSHQKLATLDVSNNFF------QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP  160 (543)
Q Consensus        87 ~~~~~~~~~L~~L~ls~~~i------~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~  160 (543)
                      +.+|.+|++|+.|.+..+..      ...+|..+.....+|+.|++.++++. .+|..+ ...+|++|++.++.+. .++
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            34466677777777654321      12344444443345777777776665 455555 3467777777777666 555


Q ss_pred             hHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCC
Q 040468          161 ERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLS  240 (543)
Q Consensus       161 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~  240 (543)
                      .++. .+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+++|+.|++++|.....+|..+ +++
T Consensus       628 ~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            5443 36677777777654332332 35566777777777766555666667777777777777765444555433 567


Q ss_pred             CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-------cCCCCCCCCCc
Q 040468          241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-------LESVIPDSPNL  313 (543)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L  313 (543)
                      +|+.|++++|......|..   ..+|+.|+++++.+.. .+....+++|+.|++.++.....       .+......++|
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            7777777777554443432   3467777777777653 33333466677776665432111       11122234678


Q ss_pred             cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCC
Q 040468          314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVA  393 (543)
Q Consensus       314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  393 (543)
                      +.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.                
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------  843 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------  843 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----------------
Confidence            888888887666777788888888888888875444666654 678888888888765422221                


Q ss_pred             CCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcc
Q 040468          394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLS  473 (543)
Q Consensus       394 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls  473 (543)
                                                                                           ..++|++|+|+
T Consensus       844 ---------------------------------------------------------------------~~~nL~~L~Ls  854 (1153)
T PLN03210        844 ---------------------------------------------------------------------ISTNISDLNLS  854 (1153)
T ss_pred             ---------------------------------------------------------------------cccccCEeECC
Confidence                                                                                 03589999999


Q ss_pred             cCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468          474 CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       474 ~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  525 (543)
                      +|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.+++++|.-
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            99999 8999999999999999999775547888889999999999999974

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-26  Score=212.60  Aligned_cols=410  Identities=21%  Similarity=0.203  Sum_probs=239.8

Q ss_pred             CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc-ccccccCchHhhhCCCCCCE
Q 040468           94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY-NQLTGEIPERMATGCFSLEI  172 (543)
Q Consensus        94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~  172 (543)
                      +.-..++|..|.|+ .+|...|+.+++|+.|||++|.|+.+.|++|.++++|..|.+-+ |+|+ .+|++.|.++.+++.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            46778999999999 99999999999999999999999988999999999988877766 8888 999999999999999


Q ss_pred             EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468          173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL  252 (543)
Q Consensus       173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  252 (543)
                      |.+.-|++.......+..++++..|.+.+|.+...-...+..+..++.+.+..|.+-.     ..+++.+.... ..+  
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~--  216 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMN--  216 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhc--
Confidence            9999999998888889999999999999998874444467788888888877766321     11112111100 000  


Q ss_pred             cccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEE---EcCCCccccc-cCCCCCCCCCccEEEccccccccccC
Q 040468          253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV---HLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIP  328 (543)
Q Consensus       253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~  328 (543)
                          |..++.........+.+..+..+...-+.+. ++.+   -...+...+. +...|..+++|++|++++|+++.+.+
T Consensus       217 ----~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  217 ----PIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             ----hhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence                1111111111222222222222222211111 1111   0111111111 22235555666666666666665555


Q ss_pred             ccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 040468          329 NRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASS  408 (543)
Q Consensus       329 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  408 (543)
                      .+|.+...++.|.|..|++...-...|.++..|+.|++++|+++...|..|..........-...|..+.|...|-..|.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl  371 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL  371 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence            55666666666666666555433444555666666666666665555555555555555555555555666555444444


Q ss_pred             ccccccCCccCCCCCCCCCCc---------------ccccc--cCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468          409 YTKTALNATTPFSSSCGRGYP---------------YALDY--VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID  471 (543)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  471 (543)
                      .... .....++..+.+-+..               -+..+  .+.=.++.+..+++...+.+....+...++...++|+
T Consensus       372 r~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~tely  450 (498)
T KOG4237|consen  372 RKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELY  450 (498)
T ss_pred             hhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHh
Confidence            3333 1111111111111100               00000  0111112233445555555555566666666777777


Q ss_pred             cccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCC
Q 040468          472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  523 (543)
Q Consensus       472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n  523 (543)
                      +.+|.++ .+|..  .+.+| .+++++|+|...---.|.++.+|.+|=|++|
T Consensus       451 l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  451 LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            7777777 66665  55666 7777777776433444666677777666654

>PLN03210 Resistant to P

Probab=99.90  E-value=2.6e-22  Score=224.62  Aligned_cols=341  Identities=21%  Similarity=0.212  Sum_probs=260.7

Q ss_pred             CCCCCCCceeEEEeeCCCCC------CCcchhccCC-CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCC
Q 040468           15 NSLTPKFQLTSISLSGYIDG------GTFPKFLYHQ-HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFR   87 (543)
Q Consensus        15 ~~~~~~~~L~~L~L~~~~~~------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~   87 (543)
                      ..+..+.+|+.|.+..+...      ..+|..+..+ ++|+.|.+.++.+. .+|..+  .+.+|++|++.++++ ..++
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l-~~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKL-EKLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccc-cccc
Confidence            34555668888888655432      2356666665 46999999998876 677654  578999999999987 4567


Q ss_pred             CCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCC
Q 040468           88 MPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC  167 (543)
Q Consensus        88 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  167 (543)
                      .++..+++|++|+++++.....+|. +.. +++|++|++++|.....+|..+.++++|+.|++++|.....+|...  .+
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l  703 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NL  703 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CC
Confidence            7888999999999998764436664 443 7899999999987666788899999999999999876555777655  48


Q ss_pred             CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC-------CcccccccCCC
Q 040468          168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS-------GEIPRWLGNLS  240 (543)
Q Consensus       168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~~~~~~l~~~~  240 (543)
                      ++|+.|++++|......+.   ...+|+.|++.++.+. .+|..+ .+++|+.|.+.++...       ...+.....++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            8999999999865433332   2468899999999876 555544 5678888888764321       11122233457


Q ss_pred             CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccc
Q 040468          241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY  320 (543)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (543)
                      +|+.|++++|.....+|..+..+++|+.|++++|...+.++....+++|+.|++++|......+..   .++|++|++++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            899999999987777888999999999999999865555666557899999999998654433332   36899999999


Q ss_pred             cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       321 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      |.++ .+|.++..+++|+.|++.+|+-...+|..+..+++|+.+++++|.-.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            9998 78889999999999999997554467777889999999999999654

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.2e-25  Score=203.16  Aligned_cols=277  Identities=23%  Similarity=0.212  Sum_probs=158.1

Q ss_pred             CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCC-CcCccCCchhhcCCCCCCEE
Q 040468           70 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR-NAFNGSIPSSFADMQMLARL  148 (543)
Q Consensus        70 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~-~~i~~~~~~~l~~l~~L~~L  148 (543)
                      ..-..++|..|+|+...+.+|+.+++||.|||++|.|. .+..+.++.++++.+|.+.+ |+|+......|+++..|+.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            34455555555555555555555666666666655555 44444444455555555444 55553333445555555555


Q ss_pred             ecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCc------------cCchhhhcCC
Q 040468          149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG------------EIPESLSKCR  216 (543)
Q Consensus       149 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------~~~~~l~~~~  216 (543)
                      .+.-|++. .+....+..++++..|.+.+|.+.......+..+..++.+.+..|.+..            ..+-.++...
T Consensus       146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            55555555 4555555555555555555555543333345555555555554443210            0111112222


Q ss_pred             CCCEEEccCCcCCCcccccccCC-CCCcEEEccCCccccc-CcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEE
Q 040468          217 RLGGLYLSDNHLSGEIPRWLGNL-SFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVH  293 (543)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~  293 (543)
                      ...-..+.+.++....+..|... ..+.+-..+.+..... +...|..+++|+.+++++|.++.+-+.+|. ...+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            22222233333332223323221 1111111122222222 223577888888888888888877777665 77888888


Q ss_pred             cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468          294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE  348 (543)
Q Consensus       294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~  348 (543)
                      +.+|++...-..+|.++..|+.|++.+|+|+...|.+|.....|..|++-.|++.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            8888887666777888888888888888888878888888888888888888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=4.5e-20  Score=192.12  Aligned_cols=63  Identities=24%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             ceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccc
Q 040468          466 SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL  533 (543)
Q Consensus       466 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  533 (543)
                      +|+.|++++|+++ .+|...   .+|+.|++++|.++ .+|..|..+++|+.|++++|++++.++..+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4555666666655 344322   24555666666665 455556666666666666666655444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=2.7e-19  Score=186.32  Aligned_cols=267  Identities=22%  Similarity=0.300  Sum_probs=190.7

Q ss_pred             CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468          119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ  198 (543)
Q Consensus       119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  198 (543)
                      .+-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.    .+++|++|++++|.++.. +.   ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceee
Confidence            34667788887777 5666554  46788888888777 5553    256788888888877743 22   246778888


Q ss_pred             CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                      +.+|.+. .+|..   ...|+.|++++|.+. .+|.   ..++|+.|++++|.+.+. |..   ..+|+.|++++|.+..
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc
Confidence            8888776 33332   256778888888776 3343   246788888888888754 322   2457788888888775


Q ss_pred             CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468          279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL  358 (543)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l  358 (543)
                      .+ ..  +.+|+.|++++|++++.+. .   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..   .
T Consensus       337 LP-~l--p~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~  401 (788)
T PRK15387        337 LP-TL--PSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---P  401 (788)
T ss_pred             cc-cc--ccccceEecCCCccCCCCC-C---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---c
Confidence            33 22  3578899999988875432 2   257888899999888 45543   356889999999988 45542   3


Q ss_pred             CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468          359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR  438 (543)
Q Consensus       359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (543)
                      ++|+.|++++|.+. .+|..                                                            
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l------------------------------------------------------------  420 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPML------------------------------------------------------------  420 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcc------------------------------------------------------------
Confidence            67889999999875 23321                                                            


Q ss_pred             CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468          439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN  511 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~  511 (543)
                                               +.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus       421 -------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        421 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence                                     246788999999999 89999999999999999999999888777643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=9e-18  Score=176.18  Aligned_cols=201  Identities=27%  Similarity=0.388  Sum_probs=90.5

Q ss_pred             CCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEcc
Q 040468          145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS  224 (543)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  224 (543)
                      ...|++++++++ .+|..+   .++++.|++++|.+... +..+  .++|+.|++++|.++ .+|..+.  .+|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            344444444444 334322   22344444444444422 1111  124445555444444 2232221  245555555


Q ss_pred             CCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccC
Q 040468          225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLE  304 (543)
Q Consensus       225 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  304 (543)
                      +|.+. .+|..+.  .+|+.|++++|.+.. +|..+.  ++|+.|++++|.+.......  +++|+.|++++|.++..+.
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCc
Confidence            55544 2333222  245555555555543 233222  34555555555554322111  2345555555555553221


Q ss_pred             CCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          305 SVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       305 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      . +  .++|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+  .++|++|++++|.+.
T Consensus       322 ~-l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        322 T-L--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             c-c--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            1 1  145666666666655 3443332  45666666666655 344433  245666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=6e-17  Score=170.04  Aligned_cols=247  Identities=25%  Similarity=0.377  Sum_probs=182.7

Q ss_pred             CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEc
Q 040468          168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM  247 (543)
Q Consensus       168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  247 (543)
                      .+...|+++++.++.. +..+  .+.++.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  +.|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTI-PACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            3567889988887743 3333  357999999999988 5555443  58999999999887 4555442  47899999


Q ss_pred             cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccccc
Q 040468          248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI  327 (543)
Q Consensus       248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  327 (543)
                      ++|.+.. +|..+.  .+|+.|++++|.+...+...  +++|+.|++++|.++..+. .+.  ++|+.|++++|.++ .+
T Consensus       249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~lp--~sL~~L~Ls~N~Lt-~L  319 (754)
T PRK15370        249 SINRITE-LPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPA-HLP--SGITHLNVQSNSLT-AL  319 (754)
T ss_pred             cCCccCc-CChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcc-cch--hhHHHHHhcCCccc-cC
Confidence            9998884 455553  57999999999888543322  4689999999998875432 222  47899999999988 45


Q ss_pred             CccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 040468          328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYAS  407 (543)
Q Consensus       328 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  407 (543)
                      |..+  .++|+.|++++|.++ .+|..+  .++|+.|++++|++. .+|..+                            
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l----------------------------  365 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETL----------------------------  365 (754)
T ss_pred             Cccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhh----------------------------
Confidence            5443  367999999999988 466655  378999999999875 333221                            


Q ss_pred             cccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhc
Q 040468          408 SYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY  487 (543)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  487 (543)
                                                                              +++|++|++++|.++ .+|..+. 
T Consensus       366 --------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~-  387 (754)
T PRK15370        366 --------------------------------------------------------PPTITTLDVSRNALT-NLPENLP-  387 (754)
T ss_pred             --------------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence                                                                    357889999999998 6787665 


Q ss_pred             ccccCeeeCcCCccccccChhhhc----cCCCCeeeCCCCcCc
Q 040468          488 LTKIHALNLSHNNLTGTIPTTFSN----LKQIESLDLSYNLLH  526 (543)
Q Consensus       488 l~~L~~L~ls~n~i~~~~~~~~~~----l~~L~~L~l~~n~i~  526 (543)
                       ..|+.|++++|.+. .+|+.+.+    ++++..|++.+|+++
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             36999999999998 56655544    478899999999985

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=5.6e-18  Score=165.26  Aligned_cols=162  Identities=22%  Similarity=0.359  Sum_probs=97.2

Q ss_pred             ccccEEEcCCCccccc----cCCCCCCCCCccEEEccccccccc----cCccCCCCCCCCEEEccCcccccc----cchh
Q 040468          287 AYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGS----IPNRIDRLPQLSYLLLANNYIEGE----IPVQ  354 (543)
Q Consensus       287 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~i~~~----~~~~  354 (543)
                      ++|++|++++|.+++.    ....+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.    +...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            3445555555544421    122344556777777777777632    223345556788888888877643    2344


Q ss_pred             hhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccc
Q 040468          355 LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY  434 (543)
Q Consensus       355 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (543)
                      +..+++|++|++++|++.+.....+...-                                                   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---------------------------------------------------  245 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASAL---------------------------------------------------  245 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHH---------------------------------------------------
Confidence            55678888888888877532111110000                                                   


Q ss_pred             cCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccc----cChhhhcccccCeeeCcCCccccc----cC
Q 040468          435 VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNLSHNNLTGT----IP  506 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~i~~~----~~  506 (543)
                                               . ...+.|++|++++|.+++.    ++..+..+++|+++++++|.+...    ..
T Consensus       246 -------------------------~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         246 -------------------------L-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             -------------------------h-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence                                     0 0035788888888887622    334566678888888888888854    34


Q ss_pred             hhhhcc-CCCCeeeCCCCcC
Q 040468          507 TTFSNL-KQIESLDLSYNLL  525 (543)
Q Consensus       507 ~~~~~l-~~L~~L~l~~n~i  525 (543)
                      +.+... +.|+.|++.+|++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         300 ESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhhcCCchhhcccCCCCC
Confidence            444444 6888888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1e-17  Score=163.50  Aligned_cols=272  Identities=22%  Similarity=0.226  Sum_probs=138.1

Q ss_pred             EEccCCccc-ccCCCCCcCCCCCCEEEcCCCccccC----CchhhhcCCCCCcEEEcCCCcCcc------CCchhhcCCC
Q 040468           75 LLLANNSLF-GSFRMPIHSHQKLATLDVSNNFFQGH----IPVEIGTYLPGLMEFNLSRNAFNG------SIPSSFADMQ  143 (543)
Q Consensus        75 L~L~~~~~~-~~~~~~~~~~~~L~~L~ls~~~i~~~----~~~~~~~~l~~L~~L~L~~~~i~~------~~~~~l~~l~  143 (543)
                      |+|.++.+. ......+..+.+|++|+++++.+++.    ++..+.. .+.+++++++++.+..      .++..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            555555554 22233345566678888887776432    2222222 5567777777766541      1234455566


Q ss_pred             CCCEEecccccccccCchHhhhCCC---CCCEEEccCCcCCCc----CcccccCC-CCcCEEeCCCCccCcc----Cchh
Q 040468          144 MLARLDISYNQLTGEIPERMATGCF---SLEILALSNNSLQGH----IFSKKFSL-TNLMTLQLDGNNFSGE----IPES  211 (543)
Q Consensus       144 ~L~~L~L~~~~~~~~~~~~~~~~~~---~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~  211 (543)
                      +|++|++++|.+....+..+. .+.   +|++|++++|++.+.    ....+..+ ++|+.|++.+|.++..    .+..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            777777777766533332222 122   366666666665521    11223334 5566666666655421    1223


Q ss_pred             hhcCCCCCEEEccCCcCCCc----ccccccCCCCCcEEEccCCcccccC----cccccCCCCCcEEEccCCcCccCCCCC
Q 040468          212 LSKCRRLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNNLEGLI----PIEFCQLRFLRILDLSNNTIFGTLPSC  283 (543)
Q Consensus       212 l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~  283 (543)
                      +..+++|++|++++|.+...    .+..+...++|+.|++++|.+.+..    ...+..+                    
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~--------------------  220 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL--------------------  220 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc--------------------
Confidence            33444555555555544421    1112233344555555544443211    1122233                    


Q ss_pred             CCcccccEEEcCCCccccccCC-----CCCCCCCccEEEcccccccc----ccCccCCCCCCCCEEEccCcccccc----
Q 040468          284 FSPAYIEQVHLSKNKIEGRLES-----VIPDSPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYIEGE----  350 (543)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~n~i~~~----  350 (543)
                         ++|+.|++++|.+++....     .....+.|++|++++|.+++    .+...+..+++|+.+++++|.+++.    
T Consensus       221 ---~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         221 ---KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             ---CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence               4445555555444321110     11124677778887777752    2234455567788888888887744    


Q ss_pred             cchhhhCC-CCCCEEeCCCCcc
Q 040468          351 IPVQLCQL-KEVQLIDLSHNNL  371 (543)
Q Consensus       351 ~~~~l~~l-~~L~~L~l~~n~~  371 (543)
                      ....+... +.|+.+++.+|++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         298 LAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHhhcCCchhhcccCCCCC
Confidence            22333334 6778888877763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=2.2e-17  Score=134.78  Aligned_cols=169  Identities=28%  Similarity=0.487  Sum_probs=115.1

Q ss_pred             CCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC
Q 040468          280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK  359 (543)
Q Consensus       280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~  359 (543)
                      ++..+..+.++.|.+++|+++.. +..+..+.+|+.|++++|++. ..|..+.++++|+.|++.-|++. ..|..|..++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            33444456666677777777633 334556677777777777777 66777777777777777777776 6677777777


Q ss_pred             CCCEEeCCCCcccc-cCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468          360 EVQLIDLSHNNLSG-HIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR  438 (543)
Q Consensus       360 ~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (543)
                      -|+.||+.+|++.. ..|.-|..                                                         
T Consensus       103 ~levldltynnl~e~~lpgnff~---------------------------------------------------------  125 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFY---------------------------------------------------------  125 (264)
T ss_pred             hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence            77777777777652 12211111                                                         


Q ss_pred             CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCee
Q 040468          439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESL  518 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  518 (543)
                                               ++.|+-|+|+.|.++ .+|..++.+++|+.|.+.+|.+. ..|..++.+..|+.|
T Consensus       126 -------------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  126 -------------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             -------------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence                                     456677777777777 67777777777777777777777 677777777777777


Q ss_pred             eCCCCcCcccCCcccccc
Q 040468          519 DLSYNLLHGKIPSQLTVL  536 (543)
Q Consensus       519 ~l~~n~i~~~~~~~~~~l  536 (543)
                      .|.+|+++ ++|..++.+
T Consensus       179 hiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hcccceee-ecChhhhhh
Confidence            77777777 555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.51  E-value=5e-16  Score=126.91  Aligned_cols=180  Identities=26%  Similarity=0.419  Sum_probs=143.4

Q ss_pred             ccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCE
Q 040468          260 FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSY  339 (543)
Q Consensus       260 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~  339 (543)
                      +..+..++.|.+++|.++...+....+.+|+.|++.+|+++. .+..++.++.|+.|++.-|++. ..|..|+.+|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            335667778888888888777766668888888888888874 4556788899999999999888 78899999999999


Q ss_pred             EEccCccccc-ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 040468          340 LLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT  418 (543)
Q Consensus       340 L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  418 (543)
                      |++.+|++.+ .+|..|..+..|+-|.+++|.+. .+|+++.+                                     
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-------------------------------------  148 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-------------------------------------  148 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-------------------------------------
Confidence            9999998864 57888888899999999999885 56666544                                     


Q ss_pred             CCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC
Q 040468          419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH  498 (543)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  498 (543)
                                                                   +++|+.|.+..|.+- .+|..++.++.|++|.|.+
T Consensus       149 ---------------------------------------------lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  149 ---------------------------------------------LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             ---------------------------------------------hcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence                                                         568999999999988 7999999999999999999


Q ss_pred             CccccccChhhhccC---CCCeeeCCCCcCc
Q 040468          499 NNLTGTIPTTFSNLK---QIESLDLSYNLLH  526 (543)
Q Consensus       499 n~i~~~~~~~~~~l~---~L~~L~l~~n~i~  526 (543)
                      |+++ ++|..++.+.   +=+.+...+|+.-
T Consensus       183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  183 NRLT-VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            9999 7776666553   3344555666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=3.5e-12  Score=113.99  Aligned_cols=227  Identities=24%  Similarity=0.260  Sum_probs=148.1

Q ss_pred             hhcCCCCCEEEccCCcC--------CCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCC
Q 040468          212 LSKCRRLGGLYLSDNHL--------SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSC  283 (543)
Q Consensus       212 l~~~~~L~~L~l~~~~~--------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  283 (543)
                      +.-+..|..|..++..-        ...+|-.+.-+.+|..+.++.|.-..+. .....-|.|..+.+.+..+.. .+..
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~~l  255 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VPSL  255 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc-cccc
Confidence            34456777777765421        1122222333556666666666443221 111223556666666554332 1221


Q ss_pred             CCcccccEEEcCC-CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468          284 FSPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ  362 (543)
Q Consensus       284 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  362 (543)
                      .....+....... .-.+|.....+..+..|+.+|+++|.|+ .+...+.-.|.++.|+++.|.+...  ..++.+++|.
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~  332 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ  332 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence            1111121111111 1122333334556688999999999999 6778888899999999999999843  3378899999


Q ss_pred             EEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCC
Q 040468          363 LIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPM  442 (543)
Q Consensus       363 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (543)
                      .||+++|.+++.     ..|.                                                           
T Consensus       333 ~LDLS~N~Ls~~-----~Gwh-----------------------------------------------------------  348 (490)
T KOG1259|consen  333 LLDLSGNLLAEC-----VGWH-----------------------------------------------------------  348 (490)
T ss_pred             EeecccchhHhh-----hhhH-----------------------------------------------------------
Confidence            999999998631     1111                                                           


Q ss_pred             CCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccc-ccChhhhccCCCCeeeCC
Q 040468          443 GKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS  521 (543)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~l~  521 (543)
                                         ..+-|++.|.|+.|.+.  ...++..+-+|..||+++|+|.. .-...|+++|.|+++.+.
T Consensus       349 -------------------~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  349 -------------------LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             -------------------hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence                               01568999999999998  45678999999999999999974 234679999999999999


Q ss_pred             CCcCccc
Q 040468          522 YNLLHGK  528 (543)
Q Consensus       522 ~n~i~~~  528 (543)
                      +|++.+.
T Consensus       408 ~NPl~~~  414 (490)
T KOG1259|consen  408 GNPLAGS  414 (490)
T ss_pred             CCCcccc
Confidence            9999843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=1.7e-12  Score=118.55  Aligned_cols=250  Identities=19%  Similarity=0.196  Sum_probs=144.7

Q ss_pred             ccCCCCcCEEeCCCCccCcc----CchhhhcCCCCCEEEccCCcCC---Cc-------ccccccCCCCCcEEEccCCccc
Q 040468          188 KFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLS---GE-------IPRWLGNLSFLVDIIMPNNNLE  253 (543)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~---~~-------~~~~l~~~~~L~~L~l~~~~~~  253 (543)
                      +..+..++++++++|.+...    +...+...+.|+..++++-...   ..       +...+..+|.|+.+++++|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34566788888888876532    2344556667777777653211   11       1233455667777777777665


Q ss_pred             ccCccc----ccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc---
Q 040468          254 GLIPIE----FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS---  326 (543)
Q Consensus       254 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~---  326 (543)
                      ...++.    +.++..|+.|.+.+|.+........ -..|..|.         .....+.-+.|+.+....|++.+.   
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence            333332    3455666777776665542211110 01111111         011123346677777777766532   


Q ss_pred             -cCccCCCCCCCCEEEccCccccc----ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 040468          327 -IPNRIDRLPQLSYLLLANNYIEG----EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGR  401 (543)
Q Consensus       327 -~~~~l~~~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  401 (543)
                       +...|...+.|+.+.+..|.|..    .+...+..+++|+.|||.+|-++......+...-                  
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL------------------  237 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL------------------  237 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh------------------
Confidence             23455666777777777777642    2345567788888888888877633222211100                  


Q ss_pred             CCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccccc
Q 040468          402 ASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI  481 (543)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  481 (543)
                                                                                  ..+++|++|++++|-++...
T Consensus       238 ------------------------------------------------------------~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  238 ------------------------------------------------------------SSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             ------------------------------------------------------------cccchheeeccccccccccc
Confidence                                                                        11567888888888777555


Q ss_pred             Chhh-----hcccccCeeeCcCCcccc----ccChhhhccCCCCeeeCCCCcC
Q 040468          482 PTQI-----GYLTKIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       482 ~~~l-----~~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i  525 (543)
                      ...|     ...++|++|.+.+|.|+.    .+..++..-|.|+.|+|++|.+
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4433     337788888888888764    2345566678888888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.15  E-value=7.9e-11  Score=126.31  Aligned_cols=129  Identities=22%  Similarity=0.203  Sum_probs=83.1

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcc-cccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNL-SGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .+++.++.++.+.-. +. -..+++|++|-+.++.. ...++..+|..++.|++|+|++|.-.+.+|..++.+.+||+|+
T Consensus       524 ~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            567777766666522 21 13445677777777651 2356666667777777777777655566777777777777777


Q ss_pred             cCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc
Q 040468          101 VSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ  154 (543)
Q Consensus       101 ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~  154 (543)
                      ++++.+. .+|.++.+ +..|.+|++..+......+.....+++|++|.+....
T Consensus       602 L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            7777777 77777766 6777777777655433344555556777777665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.6e-11  Score=115.44  Aligned_cols=160  Identities=22%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             ceeEEEeeCCCCCCCcc-hhccCCCCCCEEeccCCcccccCC-hhhhhcCCCCcEEEccCCcccccCC-CCCcCCCCCCE
Q 040468           22 QLTSISLSGYIDGGTFP-KFLYHQHDLKNANLSHLNLSGEFP-NWLVENNTNLETLLLANNSLFGSFR-MPIHSHQKLAT   98 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~   98 (543)
                      +|+++.|.++.+....- .....|++++.|+|++|=+....+ ..+...+++|+.|+++.|++..... ..-..+++|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            45566666555542211 233455666666666654442111 1233455666666666655421110 01113455555


Q ss_pred             EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468           99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN  178 (543)
Q Consensus        99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n  178 (543)
                      |.++.|.++..-...+...+|+|+.|++..|............++.|+.|||++|.+...-.......++.|+.|+++.+
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            55555555433333333335555555555553211222223334455555555555441111111122444555555554


Q ss_pred             cCC
Q 040468          179 SLQ  181 (543)
Q Consensus       179 ~~~  181 (543)
                      ++.
T Consensus       282 gi~  284 (505)
T KOG3207|consen  282 GIA  284 (505)
T ss_pred             Ccc
Confidence            444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=7.5e-12  Score=114.44  Aligned_cols=133  Identities=23%  Similarity=0.208  Sum_probs=77.3

Q ss_pred             CCCCcEEEccCCccccc----CcccccCCCCCcEEEccCCcCccCCC-----CCCCcccccEEEcCCCccccc----cCC
Q 040468          239 LSFLVDIIMPNNNLEGL----IPIEFCQLRFLRILDLSNNTIFGTLP-----SCFSPAYIEQVHLSKNKIEGR----LES  305 (543)
Q Consensus       239 ~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~~~  305 (543)
                      -+.|+.+...+|.+...    ....|+.++.|+.+.++.|.|.....     .+..+++|+.|++.+|-++..    ...
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            34555555555554332    12234455556666666555542222     122356666666666655432    234


Q ss_pred             CCCCCCCccEEEccccccccccCccC-----CCCCCCCEEEccCcccccc----cchhhhCCCCCCEEeCCCCcc
Q 040468          306 VIPDSPNLVTLDLSYNCLHGSIPNRI-----DRLPQLSYLLLANNYIEGE----IPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       306 ~~~~~~~L~~L~l~~~~i~~~~~~~l-----~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      .++.+++|+.|++++|.+......++     ...|+|+.|.+.+|.|+..    +...+...+.|+.|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            45666778888888887765333222     3367888888888888632    334445577888888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.2e-11  Score=113.43  Aligned_cols=211  Identities=22%  Similarity=0.173  Sum_probs=127.0

Q ss_pred             hcCCCCcEEEccCCcccccCC-CCCcCCCCCCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCch-hhcCCC
Q 040468           67 ENNTNLETLLLANNSLFGSFR-MPIHSHQKLATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQ  143 (543)
Q Consensus        67 ~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~-~l~~l~  143 (543)
                      .++.+|+++.|.++.+..... .-.+.|++++.|||++|-+.. .....+.+.+|+|+.|+++.|++...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456778888888887632221 346678899999998886652 12335566688999999988877522211 122457


Q ss_pred             CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccC-chhhhcCCCCCEEE
Q 040468          144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI-PESLSKCRRLGGLY  222 (543)
Q Consensus       144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~  222 (543)
                      +|+.|.++.|+++..-...+...+|+|+.|.+.+|...........-++.|+.|++++|.+.... ......++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88888888888874444444556888888888888532223333334677888888888766321 13346677777777


Q ss_pred             ccCCcCCCcc-ccc-----ccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCc
Q 040468          223 LSDNHLSGEI-PRW-----LGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       223 l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      ++.+.+.+.- |+.     ....++|+.|++..|++.++. ...+..+++|+.+.+..+.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777765321 111     234555666666666554321 112223344444454444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=4.3e-10  Score=96.62  Aligned_cols=127  Identities=27%  Similarity=0.291  Sum_probs=38.4

Q ss_pred             CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468           92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE  171 (543)
Q Consensus        92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~  171 (543)
                      +..++++|+|++|.|. .+. .+...+.+|+.|++++|.++..  +.+..+++|+.|++++|.++ .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4445566666666655 332 3332355666666666666522  34555666666666666666 45444433466667


Q ss_pred             EEEccCCcCCCc-CcccccCCCCcCEEeCCCCccCccC---chhhhcCCCCCEEEc
Q 040468          172 ILALSNNSLQGH-IFSKKFSLTNLMTLQLDGNNFSGEI---PESLSKCRRLGGLYL  223 (543)
Q Consensus       172 ~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l  223 (543)
                      +|++++|++... ....+..+++|+.|++.+|.+....   ...+..+|+|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777766666532 1234455666667776666655321   123345666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=3.8e-10  Score=96.97  Aligned_cols=128  Identities=25%  Similarity=0.235  Sum_probs=39.5

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~  122 (543)
                      +..+++.|+|.++.++ .+. .+...+.+|+.|++++|.+...  ..+..+++|++|++++|.++ .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4445677777777665 332 2222456677777777776443  24666777777777777776 55444433367777


Q ss_pred             EEEcCCCcCccC-CchhhcCCCCCCEEeccccccccc--CchHhhhCCCCCCEEEc
Q 040468          123 EFNLSRNAFNGS-IPSSFADMQMLARLDISYNQLTGE--IPERMATGCFSLEILAL  175 (543)
Q Consensus       123 ~L~L~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l  175 (543)
                      +|++++|++... ....+..+++|+.|++.+|.+...  ....+...+|+|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777777776531 124455667777777777766521  11223334555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=2.9e-10  Score=80.18  Aligned_cols=61  Identities=44%  Similarity=0.579  Sum_probs=56.3

Q ss_pred             CceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468          465 TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       465 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  525 (543)
                      |+|++|++++|+++...+..|..+++|++|+|++|.++...|.+|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5899999999999955557899999999999999999988889999999999999999986

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=2.9e-11  Score=117.35  Aligned_cols=180  Identities=29%  Similarity=0.392  Sum_probs=131.8

Q ss_pred             CCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE
Q 040468           44 QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~  123 (543)
                      +..-...+++.|++. ++|..+ ..+..|+.+.+..|.+ ..+|.+++++..|++++++.|.+. .+|..++. | -|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-ccee
Confidence            344456778888876 777764 5667778888887776 567778888888888888888887 77877775 3 5888


Q ss_pred             EEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc
Q 040468          124 FNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN  203 (543)
Q Consensus       124 L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~  203 (543)
                      |.+++|+++ .+|+.++..+.|..||.+.|.+. .+|..+.. +.+|+.|++..|++.. .+..+..+ .|..||++.|+
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCc
Confidence            888888887 67777777778888888888877 67766654 7778888888887763 34445544 37778888888


Q ss_pred             cCccCchhhhcCCCCCEEEccCCcCCCcccccc
Q 040468          204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL  236 (543)
Q Consensus       204 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  236 (543)
                      +. .+|-.|..+..|++|-+..|.+. ..|..+
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            77 66777888888888888888776 334333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=5.9e-10  Score=111.94  Aligned_cols=104  Identities=36%  Similarity=0.476  Sum_probs=62.6

Q ss_pred             CCCcEEEccCCcCccCCCCCCCc-ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468          264 RFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL  342 (543)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l  342 (543)
                      ..++.+++.++.+....+..... ++|+.|++++|.+.... ..+..+++|+.|++++|++. .++......+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            45566666666655433333333 26666666666665332 34556677777777777776 44444446667777777


Q ss_pred             cCcccccccchhhhCCCCCCEEeCCCCc
Q 040468          343 ANNYIEGEIPVQLCQLKEVQLIDLSHNN  370 (543)
Q Consensus       343 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~  370 (543)
                      ++|++. .+|........|+++.+++|+
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            777776 555544455567777777775

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=1.9e-09  Score=113.41  Aligned_cols=114  Identities=35%  Similarity=0.542  Sum_probs=99.8

Q ss_pred             CCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 040468          336 QLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALN  415 (543)
Q Consensus       336 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  415 (543)
                      .++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..                                  
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~----------------------------------  464 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS----------------------------------  464 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC----------------------------------
Confidence            3778999999999889999999999999999999998877766544                                  


Q ss_pred             CccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeee
Q 040468          416 ATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALN  495 (543)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~  495 (543)
                                                                      +++|+.|+|++|++++.+|+.+.++++|+.|+
T Consensus       465 ------------------------------------------------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        465 ------------------------------------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             ------------------------------------------------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence                                                            56899999999999999999999999999999


Q ss_pred             CcCCccccccChhhhcc-CCCCeeeCCCCcCcccCCc
Q 040468          496 LSHNNLTGTIPTTFSNL-KQIESLDLSYNLLHGKIPS  531 (543)
Q Consensus       496 ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~  531 (543)
                      |++|.+.+.+|..+... .++..+++.+|+..+..|+
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99999999999998764 5788999999987765554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=6.6e-10  Score=119.31  Aligned_cols=132  Identities=24%  Similarity=0.304  Sum_probs=97.5

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCc--ccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS--LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP  119 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~  119 (543)
                      ......+...+-++.+. .++..  ..+++|++|-+.++.  +.......|..++.|+.||+++|.-.+.+|..++. +-
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li  595 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LV  595 (889)
T ss_pred             cchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hh
Confidence            34466677777777664 44443  356678888888885  44445556788889999999887655588888888 78


Q ss_pred             CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468          120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS  179 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  179 (543)
                      +|++|+++++.+. .+|..+.+++.|.+|++..+.....+ .++...+++|++|.+....
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            8999999888887 78888888888999988887765333 4555558888888876654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=2.4e-09  Score=107.53  Aligned_cols=174  Identities=32%  Similarity=0.399  Sum_probs=69.4

Q ss_pred             CCCcEEEcCCCcCccCCchhhcCCC-CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEE
Q 040468          119 PGLMEFNLSRNAFNGSIPSSFADMQ-MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL  197 (543)
Q Consensus       119 ~~L~~L~L~~~~i~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  197 (543)
                      +.++.|++.++.++ .++.....+. +|+.|++++|.+. .++..+. .+++|+.|+++.|.+... +...+..++|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence            33444444444444 2232333332 4444444444444 3322222 144444444444444321 1111134444444


Q ss_pred             eCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468          198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       198 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      ++++|++. .+|........|+++.+++|... ..+..+.....+..+.+.++.+... +..+..++.++.|++++|.+.
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence            44444444 22322222333444444444322 2222334444444444444443321 233444444555555555544


Q ss_pred             cCCCCCCCcccccEEEcCCCccc
Q 040468          278 GTLPSCFSPAYIEQVHLSKNKIE  300 (543)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~~~~~  300 (543)
                      .... ......++.|+++++.+.
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccc-ccccCccCEEeccCcccc
Confidence            3222 333445555555555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3e-10  Score=101.81  Aligned_cols=129  Identities=22%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             CCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEc
Q 040468          239 LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL  318 (543)
Q Consensus       239 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  318 (543)
                      ...|+++++++|.++.+ .+++.-.|.++.|++++|.+... .....+++|+.|++++|.++.. ..+-.++-+++.|.+
T Consensus       283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence            34455555555555522 34445555566666666655532 2233355566666666655432 223334456666666


Q ss_pred             cccccccccCccCCCCCCCCEEEccCcccccc-cchhhhCCCCCCEEeCCCCccc
Q 040468          319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE-IPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       319 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|.+.+  ...++.+-+|..|++++|+|... -...+.+++-|+.+.+.+|++.
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6665542  23345555566666666666421 1234555666666666666664

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=8.3e-09  Score=108.56  Aligned_cols=107  Identities=28%  Similarity=0.383  Sum_probs=63.5

Q ss_pred             eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      ++.|+|+++.+.|.+|..+.++++|++|+|++|.+.+.+|..+ ..+++|+.|+|++|++.+.+|..+..+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            5566666666666666666666666666666666665555543 556666666666666655666666666666666666


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCc
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNA  130 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~  130 (543)
                      +|.+.+.+|..+.....++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            6666555555554433344555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=1.4e-10  Score=112.75  Aligned_cols=170  Identities=28%  Similarity=0.474  Sum_probs=81.5

Q ss_pred             CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468           97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS  176 (543)
Q Consensus        97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  176 (543)
                      ...|++.|++. ++|..+.. +..|+.+.++.|.+. .+|..+.++..|.++|++.|++. ..|..++. + -|+.|-++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeEEEe
Confidence            34455555554 55554444 444555555555544 44555555555555555555555 44444432 2 24555555


Q ss_pred             CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468          177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI  256 (543)
Q Consensus       177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  256 (543)
                      +|+++ ..+..++..+.|..|+.+.|.+. ..|..++.+.+|+.+.+..|.+. .+|..+.. -.|..||++.|++. .+
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence            55544 23344444455555555555544 33444455555555555555444 23333332 22445555555544 23


Q ss_pred             cccccCCCCCcEEEccCCcCc
Q 040468          257 PIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       257 ~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      |..|..|..|++|-+.+|.+.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            444555555555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.7e-10  Score=103.33  Aligned_cols=180  Identities=22%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             ceeEEEeeCCCCCCC-cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc--CCCCCcCCCCCCE
Q 040468           22 QLTSISLSGYIDGGT-FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS--FRMPIHSHQKLAT   98 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~   98 (543)
                      +|+++||++..++.. +-..+..|.+|+.|.++|+++++.+...+ +.-.+|+.|+++.+.-...  ...-+.+|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            366666666666533 33334566666666666666665555554 4556666666666642111  1112456666666


Q ss_pred             EEcCCCccccCCchh-hhcCCCCCcEEEcCCCcCc---cCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           99 LDVSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFN---GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        99 L~ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      |++++|....+.... +...-++|..|+++++.-.   ..+..-...+++|..|||+.+.-........+..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            666666544322111 1111235666666654311   112222334556666666554322111111222355555555


Q ss_pred             ccCCc-CCCcCcccccCCCCcCEEeCCCC
Q 040468          175 LSNNS-LQGHIFSKKFSLTNLMTLQLDGN  202 (543)
Q Consensus       175 l~~n~-~~~~~~~~l~~l~~L~~L~l~~~  202 (543)
                      ++.|- +.-...-.+...|.|.+|++.++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            55552 11111223334455555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=8.2e-09  Score=72.76  Aligned_cols=61  Identities=41%  Similarity=0.572  Sum_probs=37.5

Q ss_pred             CCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468          311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      |+|++|++++|+++...+.+|..+++|+.|++++|++....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666666644445666666666666666666655555666666666666666653

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6e-10  Score=99.82  Aligned_cols=182  Identities=21%  Similarity=0.145  Sum_probs=96.4

Q ss_pred             CCcEEEccCCccccc-CCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc-CccC-CchhhcCCCCCCE
Q 040468           71 NLETLLLANNSLFGS-FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-FNGS-IPSSFADMQMLAR  147 (543)
Q Consensus        71 ~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~-i~~~-~~~~l~~l~~L~~  147 (543)
                      .|++|+|++..++.. .-..++.|.+|+.|.+.++.+.+.+...+++ -.+|+.|+++.+. +++. ....+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            366666666555322 1222445666666666666665555555555 3556666666542 2211 1123445566666


Q ss_pred             EecccccccccCch-HhhhCCCCCCEEEccCCcCC---CcCcccccCCCCcCEEeCCCCcc-CccCchhhhcCCCCCEEE
Q 040468          148 LDISYNQLTGEIPE-RMATGCFSLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNF-SGEIPESLSKCRRLGGLY  222 (543)
Q Consensus       148 L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~  222 (543)
                      |+++.|........ .+.+--++|..|++++++-.   .....-...+|+|..||++++.. +......+.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            66666654422211 12222345666666665321   11111223467777777777653 222334566778888888


Q ss_pred             ccCCcCC-CcccccccCCCCCcEEEccCCccc
Q 040468          223 LSDNHLS-GEIPRWLGNLSFLVDIIMPNNNLE  253 (543)
Q Consensus       223 l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~  253 (543)
                      ++.|..- ....-.+...|.|.+|++.++.-.
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence            8877542 111223567888888888776443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.59  E-value=1.8e-09  Score=101.41  Aligned_cols=278  Identities=18%  Similarity=0.111  Sum_probs=126.9

Q ss_pred             ceeEEEeeCCCCCCC--cchhccCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCCc-ccccCCC-CCcCCCCC
Q 040468           22 QLTSISLSGYIDGGT--FPKFLYHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANNS-LFGSFRM-PIHSHQKL   96 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~-~~~~~~~L   96 (543)
                      .|+.|++.|+.-.+.  +-.....|+++++|++.+|. +++..-..+...|++|+.|++..|. +++.... -...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            466777776655543  22334566777777776663 4444444445667777777776643 2322222 12356677


Q ss_pred             CEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCCcCcc--CCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCE
Q 040468           97 ATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRNAFNG--SIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEI  172 (543)
Q Consensus        97 ~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~  172 (543)
                      ++|++++|. +++.....+.+.++.++.+.+.+|.-.+  .+-..-..+..+.++++.++. +++.-...+...+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            777777664 3433444455555556666555542110  000111223344455544443 221112223334555566


Q ss_pred             EEccCCc-CCCcCcccc-cCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccc-cCCCCCcEEEccC
Q 040468          173 LALSNNS-LQGHIFSKK-FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPN  249 (543)
Q Consensus       173 L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~  249 (543)
                      +..+++. +++.....+ ...++|+.+.+.+++.                       ++......+ .+++.|+.+++..
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----------------------fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----------------------FSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccch-----------------------hhhhhhhhhhcCChhhhhhcccc
Confidence            6555543 221111111 2234455555544431                       111111111 2344555555554


Q ss_pred             Cccccc--CcccccCCCCCcEEEccCCcCc-cCCCCC-----CCcccccEEEcCCCcccc-ccCCCCCCCCCccEEEccc
Q 040468          250 NNLEGL--IPIEFCQLRFLRILDLSNNTIF-GTLPSC-----FSPAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSY  320 (543)
Q Consensus       250 ~~~~~~--~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~  320 (543)
                      +.....  +...-..++.|+.+.+++|... +.....     -....++.+.++++.... ..-..+..+++|+.+++.+
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            432211  1111124555555555555422 110000     113456666666665432 2333455667777777777


Q ss_pred             cc
Q 040468          321 NC  322 (543)
Q Consensus       321 ~~  322 (543)
                      ++
T Consensus       436 ~q  437 (483)
T KOG4341|consen  436 CQ  437 (483)
T ss_pred             hh
Confidence            64

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=8e-09  Score=103.90  Aligned_cols=197  Identities=26%  Similarity=0.251  Sum_probs=88.0

Q ss_pred             CCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCccc-ccccCCCCCcEE
Q 040468          167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP-RWLGNLSFLVDI  245 (543)
Q Consensus       167 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L  245 (543)
                      +++|++|++++|.|+..  ..+..++.|+.|++.+|.+...  ..+..++.|+.+++++|.+...-+ . ...+..++.+
T Consensus       117 ~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l  191 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL  191 (414)
T ss_pred             hhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence            44444444444444321  1223333344444444444422  122234455555555554442211 1 2444555555


Q ss_pred             EccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcc--cccEEEcCCCccccccCCCCCCCCCccEEEcccccc
Q 040468          246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPA--YIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL  323 (543)
Q Consensus       246 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i  323 (543)
                      .+.+|.+...  ..+..+..+..+++..+.+.. ........  +|+.+++.++.+.... ..+..+..+..+++.++.+
T Consensus       192 ~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  192 DLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             hccCCchhcc--cchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhccc
Confidence            5555554432  122222333333444444442 11211122  2566666666654321 3344556666666666665


Q ss_pred             ccccCccCCCCCCCCEEEccCcccccc---cchh-hhCCCCCCEEeCCCCccccc
Q 040468          324 HGSIPNRIDRLPQLSYLLLANNYIEGE---IPVQ-LCQLKEVQLIDLSHNNLSGH  374 (543)
Q Consensus       324 ~~~~~~~l~~~~~L~~L~l~~n~i~~~---~~~~-l~~l~~L~~L~l~~n~~~~~  374 (543)
                      ...  ..+...+.+..+....+++...   .... ....+.+..+.+..|+..+.
T Consensus       268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            522  2233444555555555554421   1111 33456666666766666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=8e-09  Score=103.90  Aligned_cols=65  Identities=23%  Similarity=0.238  Sum_probs=41.9

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccc---cChh-hhccCCCCeeeCCCCcCcccCC
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT---IPTT-FSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~---~~~~-~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                      ++++..|++++|++.  .-..+.....+..+....|.+...   .... ....+.++.+.+.+|++....+
T Consensus       254 ~~~l~~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  254 LKNLPVLDLSSNRIS--NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccchhhcccc--ccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            557777777777777  233456666677777777776521   1111 4556788888888888876554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=3.4e-09  Score=106.02  Aligned_cols=129  Identities=29%  Similarity=0.313  Sum_probs=101.8

Q ss_pred             CCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCC
Q 040468          311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDE  390 (543)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  390 (543)
                      -.|...+.+.|.+. .+...+.-++.++.|+|+.|++++.  +.+..|++|+.|||+.|.+. .+|-    +..      
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~----l~~------  229 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ----LSM------  229 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc----cch------
Confidence            46778888999988 6778888899999999999999843  36789999999999999986 2221    000      


Q ss_pred             CCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEE
Q 040468          391 PVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGI  470 (543)
Q Consensus       391 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  470 (543)
                                                                               .+              + .|..|
T Consensus       230 ---------------------------------------------------------~g--------------c-~L~~L  237 (1096)
T KOG1859|consen  230 ---------------------------------------------------------VG--------------C-KLQLL  237 (1096)
T ss_pred             ---------------------------------------------------------hh--------------h-hheee
Confidence                                                                     00              2 48899


Q ss_pred             EcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcCcc
Q 040468          471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      .|++|.++  ...++.++.+|+.||+++|-|.+.. .+-+..|.+|..|+|.||++-+
T Consensus       238 ~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  238 NLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            99999998  4566899999999999999987532 3446778899999999999863

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=5.6e-08  Score=86.30  Aligned_cols=86  Identities=23%  Similarity=0.259  Sum_probs=38.6

Q ss_pred             CCCCEEecccccccccCchHh----hhCCCCCCEEEccCCcCCCcC-----cccccCCCCcCEEeCCCCccCcc----Cc
Q 040468          143 QMLARLDISYNQLTGEIPERM----ATGCFSLEILALSNNSLQGHI-----FSKKFSLTNLMTLQLDGNNFSGE----IP  209 (543)
Q Consensus       143 ~~L~~L~L~~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~----~~  209 (543)
                      |.|+..+...|++. ..+...    +..-..|+.+.+..|.|....     ...++.+.+|+.|++.+|.++..    ..
T Consensus       157 p~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         157 PKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            45555555555554 333221    121234555555555443211     11223345555666655554421    22


Q ss_pred             hhhhcCCCCCEEEccCCcCC
Q 040468          210 ESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       210 ~~l~~~~~L~~L~l~~~~~~  229 (543)
                      ..++.++.|+.|.+.+|-+.
T Consensus       236 ~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHhcccchhhhccccchhhc
Confidence            33444455555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=1.7e-08  Score=101.25  Aligned_cols=128  Identities=27%  Similarity=0.248  Sum_probs=88.3

Q ss_pred             CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEE
Q 040468           46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN  125 (543)
Q Consensus        46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~  125 (543)
                      .|.+.+++.|.+. .+..+ ..-++.|+.|+|++|++++..  .+..+++|++|||++|.+. .+|..--..| +|+.|+
T Consensus       165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            3444555555543 22222 244678899999999886553  5788899999999999887 6665443334 489999


Q ss_pred             cCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468          126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ  181 (543)
Q Consensus       126 L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  181 (543)
                      +++|.++.  ...+.++++|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+.
T Consensus       239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99988873  3577888889999999887764433333333667888888888765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.30  E-value=3e-08  Score=93.35  Aligned_cols=133  Identities=17%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             CCCCcEEEccCCccccc-C-cccccCCCCCcEEEccCCcC-ccCCCCCC--CcccccEEEcCCCccccc--cCCCCCCCC
Q 040468          239 LSFLVDIIMPNNNLEGL-I-PIEFCQLRFLRILDLSNNTI-FGTLPSCF--SPAYIEQVHLSKNKIEGR--LESVIPDSP  311 (543)
Q Consensus       239 ~~~L~~L~l~~~~~~~~-~-~~~l~~l~~L~~L~l~~~~~-~~~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~~  311 (543)
                      +..|+.++.+++...+. . ..--.++++|+.+.+..|.- ++......  .++.|+.+++.++.....  ....-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            44555555555433211 0 11123455666666666542 11111111  156666666666543211  223344567


Q ss_pred             CccEEEcccccc-cccc----CccCCCCCCCCEEEccCcccc-cccchhhhCCCCCCEEeCCCCcc
Q 040468          312 NLVTLDLSYNCL-HGSI----PNRIDRLPQLSYLLLANNYIE-GEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       312 ~L~~L~l~~~~i-~~~~----~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      .|+.+.++.|.. ++..    ...-..+..|+.+.+++++.+ +...+.+..+++|+.+++.++.-
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            777777776632 2221    122244556777777777543 33444556677777777777643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.27  E-value=2.8e-07  Score=96.87  Aligned_cols=84  Identities=18%  Similarity=0.194  Sum_probs=38.5

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCcccc-CCchhhhcCCCCC
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG-HIPVEIGTYLPGL  121 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~~~~~~~l~~L  121 (543)
                      .+|.|++|.+++-.+...--..+..++++|..||+++++++..  .+++++++|+.|.+.+-.+.. ..-..++. +++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKL  222 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCC
Confidence            3455555555554443222223344455555555555554332  344555555555555443331 11223444 5555


Q ss_pred             cEEEcCCC
Q 040468          122 MEFNLSRN  129 (543)
Q Consensus       122 ~~L~L~~~  129 (543)
                      +.||++..
T Consensus       223 ~vLDIS~~  230 (699)
T KOG3665|consen  223 RVLDISRD  230 (699)
T ss_pred             Ceeecccc
Confidence            55555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2.1e-07  Score=83.76  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             cccccEEEcCCCccccc-cCCCCCCCCCccEEEccccccccc-cCccCCCCCCCCEEEccCcccccccch------hhhC
Q 040468          286 PAYIEQVHLSKNKIEGR-LESVIPDSPNLVTLDLSYNCLHGS-IPNRIDRLPQLSYLLLANNYIEGEIPV------QLCQ  357 (543)
Q Consensus       286 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~~------~l~~  357 (543)
                      ++++..+.+..|.+... ....+..+|.+.-|++..++|.+. ..+.+.+++.|+.|.+.++++.+.+..      .+++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            45566666666655332 233445556666777777777642 235677788888888888877643321      2456


Q ss_pred             CCCCCEEeCC
Q 040468          358 LKEVQLIDLS  367 (543)
Q Consensus       358 l~~L~~L~l~  367 (543)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            7777776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=1.2e-06  Score=56.39  Aligned_cols=36  Identities=33%  Similarity=0.642  Sum_probs=18.8

Q ss_pred             ceeEEEcccCccccccChhhhcccccCeeeCcCCccc
Q 040468          466 SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT  502 (543)
Q Consensus       466 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~  502 (543)
                      +|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44444555555555555555555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=2.7e-06  Score=54.72  Aligned_cols=38  Identities=37%  Similarity=0.642  Sum_probs=32.6

Q ss_pred             cccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468          489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       489 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      ++|++|++++|+|+ .+|..|.++++|+.|++++|+|+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 566679999999999999999983

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=4.2e-06  Score=88.15  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=33.5

Q ss_pred             CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccc-cCchHhhhCCCCCC
Q 040468           93 HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG-EIPERMATGCFSLE  171 (543)
Q Consensus        93 ~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~L~  171 (543)
                      +|.|+.|.+++-.+...--..+...+++|..||++++.++..  .+++++++|+.|.+.+-.+.. .....+|. +++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCC
Confidence            444555555443332111112223344455555555444421  344444444444444433331 11123333 44555


Q ss_pred             EEEccCC
Q 040468          172 ILALSNN  178 (543)
Q Consensus       172 ~L~l~~n  178 (543)
                      .||+|..
T Consensus       224 vLDIS~~  230 (699)
T KOG3665|consen  224 VLDISRD  230 (699)
T ss_pred             eeecccc
Confidence            5555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.1e-06  Score=77.48  Aligned_cols=212  Identities=21%  Similarity=0.173  Sum_probs=126.1

Q ss_pred             CCCCEEecccccccccCc-hHhhhCCCCCCEEEccCCcCCC--cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCC
Q 040468          143 QMLARLDISYNQLTGEIP-ERMATGCFSLEILALSNNSLQG--HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG  219 (543)
Q Consensus       143 ~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  219 (543)
                      ..++.+.+.++.+..... ..+.+.++.++++++.+|.+++  ....-+.++|.|+.|+++.|.+...+...-....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            344555666665542222 2334456678888888887763  2233345678888888888776643322112455777


Q ss_pred             EEEccCCcCCCccccc-ccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCc
Q 040468          220 GLYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNK  298 (543)
Q Consensus       220 ~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  298 (543)
                      .+.+.+..+....... +..+|.+++++++.|.+.              .+++..+.+..      ..+.++++++.+|.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~------~s~~v~tlh~~~c~  184 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIED------WSTEVLTLHQLPCL  184 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccc------cchhhhhhhcCCcH
Confidence            7777776665333322 344566666666555332              22222221111      12355666666654


Q ss_pred             cccc--cCCCCCCCCCccEEEccccccccc-cCccCCCCCCCCEEEccCccccc-ccchhhhCCCCCCEEeCCCCccccc
Q 040468          299 IEGR--LESVIPDSPNLVTLDLSYNCLHGS-IPNRIDRLPQLSYLLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNLSGH  374 (543)
Q Consensus       299 ~~~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~  374 (543)
                      ..-.  ....-.-+|++..+.+..|++... .......+|.+..|+|+.++|.+ ..-+++.++++|.-|.++++++...
T Consensus       185 ~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  185 EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            3211  111223458999999999988753 23456677888899999999974 2235688999999999999998743

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=1.2e-06  Score=69.77  Aligned_cols=83  Identities=25%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             CCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEec
Q 040468           71 NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDI  150 (543)
Q Consensus        71 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L  150 (543)
                      +|...+|++|.+.+..+.....++.++.+++++|.+. .+|..++. ++.|+.|+++.|++. ..|..+..+.++-.|+.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3444444444442222222223334445555555444 44444333 445555555555444 33444444444444444


Q ss_pred             cccccc
Q 040468          151 SYNQLT  156 (543)
Q Consensus       151 ~~~~~~  156 (543)
                      .+|.+.
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=5e-06  Score=74.19  Aligned_cols=39  Identities=28%  Similarity=0.402  Sum_probs=16.9

Q ss_pred             CCCCCEEEccCCcCCCcCcc----cccCCCCcCEEeCCCCccC
Q 040468          167 CFSLEILALSNNSLQGHIFS----KKFSLTNLMTLQLDGNNFS  205 (543)
Q Consensus       167 ~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~~~~~  205 (543)
                      ||+|+..+++.|-+....+.    .++....|+.|.+.+|.+.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            44555555554443322221    2233344555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=5e-05  Score=73.81  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCc
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNN  500 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~  500 (543)
                      +++|++|++++|... ..|..+.  .+|+.|+++.+.
T Consensus       155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            578888998888876 5565555  578888887764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=1.2e-06  Score=69.75  Aligned_cols=107  Identities=22%  Similarity=0.181  Sum_probs=87.3

Q ss_pred             ceeEEEeeCCCCCCC--cchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEE
Q 040468           22 QLTSISLSGYIDGGT--FPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATL   99 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L   99 (543)
                      .+-.++|+.|++.-.  .+..+.+..+|+..+|++|.+. .+|..+...++.++.|++.+|.+ ..+|..++.++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhc
Confidence            355678888877622  3444566778888999999997 78888877888999999999998 4556669999999999


Q ss_pred             EcCCCccccCCchhhhcCCCCCcEEEcCCCcCc
Q 040468          100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN  132 (543)
Q Consensus       100 ~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~  132 (543)
                      +++.|.+. ..|.-++. +.++.+|+..+|...
T Consensus       106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence            99999998 78888888 889999999888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.72  E-value=6.6e-05  Score=64.34  Aligned_cols=83  Identities=25%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCc-CcccccCCCCcCEE
Q 040468          119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH-IFSKKFSLTNLMTL  197 (543)
Q Consensus       119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L  197 (543)
                      .+...+||++|.+.  ....|..+++|++|.+++|.++ .+...+...+++|+.|.+.+|.+... ....+..+|+|++|
T Consensus        42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34445555555443  1234444455555555555555 44444444445555555555543321 11222334444444


Q ss_pred             eCCCCcc
Q 040468          198 QLDGNNF  204 (543)
Q Consensus       198 ~l~~~~~  204 (543)
                      .+-+|.+
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.65  E-value=0.00012  Score=60.46  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             hhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCC
Q 040468           65 LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQM  144 (543)
Q Consensus        65 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~  144 (543)
                      .|.++.+|+.+.+.. .+......+|.++.+|+.+.+.++ +. .++...+..++.++.+.+.. .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            344455555555543 233334444555555555555443 33 44444444444555555543 222122233444455


Q ss_pred             CCEEeccc
Q 040468          145 LARLDISY  152 (543)
Q Consensus       145 L~~L~L~~  152 (543)
                      |+.+++..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=6.4e-05  Score=64.42  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=72.9

Q ss_pred             CCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeC
Q 040468          442 MGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDL  520 (543)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l  520 (543)
                      ...++.+.++..++.+......+++|.+|.+++|+|+...|.--..+++|+.|.+++|+|.... .+.+..+|+|+.|.+
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4467788888888999888888999999999999999666666677889999999999987532 345788999999999


Q ss_pred             CCCcCcc
Q 040468          521 SYNLLHG  527 (543)
Q Consensus       521 ~~n~i~~  527 (543)
                      -+|+++.
T Consensus       121 l~Npv~~  127 (233)
T KOG1644|consen  121 LGNPVEH  127 (233)
T ss_pred             cCCchhc
Confidence            9999974

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00056  Score=56.44  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             cccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCc
Q 040468          235 WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNL  313 (543)
Q Consensus       235 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L  313 (543)
                      .|..+.+|+.+.+.. .+.......|..+.+|+.+.+.++ +.......+. +++++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555555555543 233344445555555666665543 3333333333 34566666644 3333444455566666


Q ss_pred             cEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468          314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ  362 (543)
Q Consensus       314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  362 (543)
                      +.+++..+ +.......+.++ .|+.+.+.+ .+.......|.++++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            66666554 443444556665 666666655 33323445566665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00083  Score=65.51  Aligned_cols=135  Identities=17%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC-ccccCCchhhhcCCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN-FFQGHIPVEIGTYLPG  120 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~~~~~~~~~l~~  120 (543)
                      ..++++++|++++|.++ .+|. +   ..+|++|.+.+|.-...+|..+  .++|++|++++| .+. .+|       ++
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s  113 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES  113 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence            34566677777766554 4442 1   3456667776654333444333  246677777666 332 222       34


Q ss_pred             CcEEEcCCCcCccCCchhhcCC-CCCCEEeccccccc--ccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEE
Q 040468          121 LMEFNLSRNAFNGSIPSSFADM-QMLARLDISYNQLT--GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL  197 (543)
Q Consensus       121 L~~L~L~~~~i~~~~~~~l~~l-~~L~~L~L~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  197 (543)
                      |+.|++..+...     .+..+ +.|+.|.+.++...  ..++.   .-.++|++|.+++|.... .+..+  ..+|+.|
T Consensus       114 Le~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L  182 (426)
T PRK15386        114 VRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKL--PESLQSI  182 (426)
T ss_pred             cceEEeCCCCCc-----ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc-Ccccc--cccCcEE
Confidence            556666544322     11122 23455555332211  01111   012457777776665432 22222  2456666


Q ss_pred             eCCCC
Q 040468          198 QLDGN  202 (543)
Q Consensus       198 ~l~~~  202 (543)
                      .+..+
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            66544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.40  E-value=1.8e-05  Score=82.00  Aligned_cols=191  Identities=23%  Similarity=0.121  Sum_probs=116.3

Q ss_pred             cCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCC-ccccc----CCCCCcCCCCCCEEEcCCCc-cccCCchhh
Q 040468           42 YHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANN-SLFGS----FRMPIHSHQKLATLDVSNNF-FQGHIPVEI  114 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~-~~~~~----~~~~~~~~~~L~~L~ls~~~-i~~~~~~~~  114 (543)
                      ..++.|+.+.+.++. +.......+...+++|+.|+++++ .....    .......+++|+.|+++++. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            457899999998884 433223455678899999999873 21111    11234567899999999988 776666677


Q ss_pred             hcCCCCCcEEEcCCCc-CccCC-chhhcCCCCCCEEeccccccc-ccCchHhhhCCCCCCEEEccCCcCCCcCcccccCC
Q 040468          115 GTYLPGLMEFNLSRNA-FNGSI-PSSFADMQMLARLDISYNQLT-GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL  191 (543)
Q Consensus       115 ~~~l~~L~~L~L~~~~-i~~~~-~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l  191 (543)
                      +..|++|++|.+.+|. ++... .....+++.|++|+++++... +.....+...+++++.+.+.....          +
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence            7778999999988887 55332 234456788999999988654 122223344477777765443321          3


Q ss_pred             CCcCEEeCCCCccC---ccCchhhhcCCCCCEEEccCCcCCCcc-cccccCCCCC
Q 040468          192 TNLMTLQLDGNNFS---GEIPESLSKCRRLGGLYLSDNHLSGEI-PRWLGNLSFL  242 (543)
Q Consensus       192 ~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L  242 (543)
                      +.++.+.+.+....   .........+++++.+.+..+...... ...+..|+.+
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33444333332211   122233466777888877777644322 2445566666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.36  E-value=1.9e-05  Score=81.80  Aligned_cols=236  Identities=22%  Similarity=0.096  Sum_probs=109.6

Q ss_pred             CCCCCEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCC-cCccCC----chhhcCCCCCCEEeccccc-ccccCchHhhh
Q 040468           93 HQKLATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRN-AFNGSI----PSSFADMQMLARLDISYNQ-LTGEIPERMAT  165 (543)
Q Consensus        93 ~~~L~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~-~i~~~~----~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~  165 (543)
                      ++.|+.+.+.++. +.+..-..+...+++|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5666666666553 221112233344666777766652 111011    1223344666777776666 44344444444


Q ss_pred             CCCCCCEEEccCCc-CCCcCcccc-cCCCCcCEEeCCCCccCcc--CchhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 040468          166 GCFSLEILALSNNS-LQGHIFSKK-FSLTNLMTLQLDGNNFSGE--IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF  241 (543)
Q Consensus       166 ~~~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  241 (543)
                      .+++|+.|.+.+|. +++.....+ ..++.|++|+++++.....  .......+++++.+.+.....          ++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence            56777777766665 443332222 3456677777776654211  112233455555544332211          333


Q ss_pred             CcEEEccCCccc---ccCcccccCCCCCcEEEccCCcCccCCC--CCCCcccccEEEcCCCccccccCCCCCCCCCccEE
Q 040468          242 LVDIIMPNNNLE---GLIPIEFCQLRFLRILDLSNNTIFGTLP--SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL  316 (543)
Q Consensus       242 L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  316 (543)
                      ++.+.+..+...   .........+++++.+.+..+.......  ..-.++.|+ ..+.         .....+..++.|
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l~~L  406 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSLRVL  406 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCccceE
Confidence            343433332221   1222334566777777777665332221  111133331 1111         111122237778


Q ss_pred             Eccccccc-cccCccCCC-CCCCCEEEccCcccc
Q 040468          317 DLSYNCLH-GSIPNRIDR-LPQLSYLLLANNYIE  348 (543)
Q Consensus       317 ~l~~~~i~-~~~~~~l~~-~~~L~~L~l~~n~i~  348 (543)
                      +++.+... ......... +..++.+++.++...
T Consensus       407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            88777543 222222222 566777777777543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00022  Score=63.92  Aligned_cols=103  Identities=25%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC--ccccCCchhhhcCCCCCcEEEcCCCcCccC-CchhhcCCCCCC
Q 040468           70 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN--FFQGHIPVEIGTYLPGLMEFNLSRNAFNGS-IPSSFADMQMLA  146 (543)
Q Consensus        70 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~--~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~-~~~~l~~l~~L~  146 (543)
                      ..|+.|++.+..++..  ..+-.+++|++|.++.|  ++.+.++..+-. +++|++|++++|++... -...+..+++|.
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchh
Confidence            3444444444444222  12334455555555555  333333322222 45666666666655410 011233444555


Q ss_pred             EEecccccccc--cCchHhhhCCCCCCEEEc
Q 040468          147 RLDISYNQLTG--EIPERMATGCFSLEILAL  175 (543)
Q Consensus       147 ~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l  175 (543)
                      .|++.+|..+.  ..-..+|.-+++|++|+-
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            56665554441  122334444566666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00036  Score=62.52  Aligned_cols=127  Identities=18%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             ceeEEEeeCCCCC-CCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCC--cccccCCCCCcCCCCCCE
Q 040468           22 QLTSISLSGYIDG-GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN--SLFGSFRMPIHSHQKLAT   98 (543)
Q Consensus        22 ~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~L~~   98 (543)
                      +++.+.+..|.-. +.+......+..|..+++.+..++. +..  +-.+++|++|.++.|  ++...+......+++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence            4555555544322 2233444556666666666665542 111  234667777777777  554444444455677777


Q ss_pred             EEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCC---chhhcCCCCCCEEeccc
Q 040468           99 LDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSI---PSSFADMQMLARLDISY  152 (543)
Q Consensus        99 L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~---~~~l~~l~~L~~L~L~~  152 (543)
                      +++++|++.. .....+.+ +++|..|++.+|..+...   -..|.-+++|++||-..
T Consensus        96 l~ls~Nki~~lstl~pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   96 LNLSGNKIKDLSTLRPLKE-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             EeecCCccccccccchhhh-hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7777777662 11111222 566777777777665311   12344456666665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=8.3e-05  Score=66.87  Aligned_cols=100  Identities=22%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L  124 (543)
                      .+.+.|+++||.+++ |  .+...++.|++|.|+-|+|+...|  +..|++|++|.|..|.|.+.-.....+.+++|+.|
T Consensus        19 ~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            345556666665542 2  224556666666666666544333  55666666666666655521122223335666666


Q ss_pred             EcCCCcCccCCc-----hhhcCCCCCCEEe
Q 040468          125 NLSRNAFNGSIP-----SSFADMQMLARLD  149 (543)
Q Consensus       125 ~L~~~~i~~~~~-----~~l~~l~~L~~L~  149 (543)
                      -|..|+-.+..+     ..+.-+++|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            665555433222     2244456666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00021  Score=64.29  Aligned_cols=100  Identities=20%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEE
Q 040468           94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEIL  173 (543)
Q Consensus        94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  173 (543)
                      .+.+.|++-+|.+.   ..++.+.++.|+.|.|+-|.|+..  ..+..+++|++|+|..|.+.+.-......++|+|+.|
T Consensus        19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34555666666655   334455567777777777776632  3466667777777777777633333455567777777


Q ss_pred             EccCCcCCCcC-----cccccCCCCcCEEe
Q 040468          174 ALSNNSLQGHI-----FSKKFSLTNLMTLQ  198 (543)
Q Consensus       174 ~l~~n~~~~~~-----~~~l~~l~~L~~L~  198 (543)
                      .|..|...+..     ...+..+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77776543322     22345577888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.91  E-value=0.0042  Score=33.03  Aligned_cols=19  Identities=42%  Similarity=0.573  Sum_probs=9.3

Q ss_pred             eeEEEcccCccccccChhhh
Q 040468          467 MFGIDLSCNKLTGEIPTQIG  486 (543)
Q Consensus       467 L~~L~ls~n~l~~~~~~~l~  486 (543)
                      |++|||++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.74  E-value=0.0043  Score=32.99  Aligned_cols=20  Identities=55%  Similarity=0.869  Sum_probs=11.0

Q ss_pred             ccCeeeCcCCccccccChhhh
Q 040468          490 KIHALNLSHNNLTGTIPTTFS  510 (543)
Q Consensus       490 ~L~~L~ls~n~i~~~~~~~~~  510 (543)
                      +|++|+|++|+++ .+|.+|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3556666666666 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.37  E-value=0.023  Score=27.93  Aligned_cols=13  Identities=46%  Similarity=0.623  Sum_probs=5.1

Q ss_pred             ceeEEEcccCccc
Q 040468          466 SMFGIDLSCNKLT  478 (543)
Q Consensus       466 ~L~~L~ls~n~l~  478 (543)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.95  E-value=0.0038  Score=54.96  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=62.5

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      ....+.||++.|++. .....|+-++.|..|+++.|.+. ..|+.+..+..++.++..+|..+ ..|.++...++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            567888999999888 66777888888889999988888 88888888888888888888887 667778888777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.86  E-value=0.032  Score=27.43  Aligned_cols=13  Identities=46%  Similarity=0.744  Sum_probs=5.1

Q ss_pred             ccCeeeCcCCccc
Q 040468          490 KIHALNLSHNNLT  502 (543)
Q Consensus       490 ~L~~L~ls~n~i~  502 (543)
                      +|++|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.77  E-value=0.00022  Score=72.06  Aligned_cols=61  Identities=30%  Similarity=0.397  Sum_probs=33.4

Q ss_pred             eeEEEcccCcccccc----Chhhhcc-cccCeeeCcCCccccc----cChhhhccCCCCeeeCCCCcCcc
Q 040468          467 MFGIDLSCNKLTGEI----PTQIGYL-TKIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       467 L~~L~ls~n~l~~~~----~~~l~~l-~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      +.+|++.+|++.+..    ...+... ..+++++++.|.|++.    ..+.+..+++++.+.+++|++..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            444666666555331    2333444 5556666666666542    33445555666666666666643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=0.0078  Score=52.01  Aligned_cols=83  Identities=12%  Similarity=0.013  Sum_probs=44.6

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCCc-ccccCCCCCcCCCCCCEE
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANNS-LFGSFRMPIHSHQKLATL   99 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L   99 (543)
                      .++.++-+++.|..+--+.+..++.++.|.+.+|. +.+...+.+..-.++|+.|++++|. |++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            56777777776665544555666666666666663 3333333333334566666666553 333333334455555555


Q ss_pred             EcCCC
Q 040468          100 DVSNN  104 (543)
Q Consensus       100 ~ls~~  104 (543)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            55543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.26  E-value=0.00087  Score=67.83  Aligned_cols=89  Identities=28%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             CCCCCEEecccccccccCc---hHhhhCCCC-CCEEEccCCcCCCcC----cccccCC-CCcCEEeCCCCccCccCc---
Q 040468          142 MQMLARLDISYNQLTGEIP---ERMATGCFS-LEILALSNNSLQGHI----FSKKFSL-TNLMTLQLDGNNFSGEIP---  209 (543)
Q Consensus       142 l~~L~~L~L~~~~~~~~~~---~~~~~~~~~-L~~L~l~~n~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~~~~---  209 (543)
                      ..++++|.+.++.++...-   ..+....++ +..+++..|.+.+..    ...+..+ +.++.+++..|.++....   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            3455556666555442111   111112222 444566666554321    2222333 456677777776664332   


Q ss_pred             -hhhhcCCCCCEEEccCCcCCC
Q 040468          210 -ESLSKCRRLGGLYLSDNHLSG  230 (543)
Q Consensus       210 -~~l~~~~~L~~L~l~~~~~~~  230 (543)
                       ..+..++.++.+.+..|.+..
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence             334455677777777776653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.83  E-value=0.016  Score=50.17  Aligned_cols=84  Identities=21%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             ccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc-ccCccC-CCCCCCCEEEccCc-ccccccchhhhCCCCCCE
Q 040468          287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG-SIPNRI-DRLPQLSYLLLANN-YIEGEIPVQLCQLKEVQL  363 (543)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l-~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~  363 (543)
                      -.++.++-+++.+..+....+..++.++.|.+.+|.--+ .-.+.+ +-.++|+.|++++| +|++.....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            346666666666666655666667777777777764221 111111 13467888888877 577666667777777777


Q ss_pred             EeCCCCc
Q 040468          364 IDLSHNN  370 (543)
Q Consensus       364 L~l~~n~  370 (543)
                      |.+.+=+
T Consensus       181 L~l~~l~  187 (221)
T KOG3864|consen  181 LHLYDLP  187 (221)
T ss_pred             HHhcCch
Confidence            7776544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.08  E-value=0.044  Score=29.77  Aligned_cols=13  Identities=38%  Similarity=0.718  Sum_probs=4.4

Q ss_pred             ccCeeeCcCCccc
Q 040468          490 KIHALNLSHNNLT  502 (543)
Q Consensus       490 ~L~~L~ls~n~i~  502 (543)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3344444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.05  E-value=0.066  Score=29.04  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=15.2

Q ss_pred             cCceeEEEcccCccccccChhh
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQI  485 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l  485 (543)
                      +++|++|+|++|++++..+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3689999999999996655544

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.71  E-value=0.23  Score=27.43  Aligned_cols=13  Identities=38%  Similarity=0.713  Sum_probs=5.6

Q ss_pred             ccCeeeCcCCccc
Q 040468          490 KIHALNLSHNNLT  502 (543)
Q Consensus       490 ~L~~L~ls~n~i~  502 (543)
                      +|+.|+|++|.|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.71  E-value=0.23  Score=27.43  Aligned_cols=13  Identities=38%  Similarity=0.713  Sum_probs=5.6

Q ss_pred             ccCeeeCcCCccc
Q 040468          490 KIHALNLSHNNLT  502 (543)
Q Consensus       490 ~L~~L~ls~n~i~  502 (543)
                      +|+.|+|++|.|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.28  E-value=0.28  Score=27.13  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=17.2

Q ss_pred             cCCCCeeeCCCCcCcccCCccc
Q 040468          512 LKQIESLDLSYNLLHGKIPSQL  533 (543)
Q Consensus       512 l~~L~~L~l~~n~i~~~~~~~~  533 (543)
                      +++|+.|++++|.|....++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4789999999999995544444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.28  E-value=0.28  Score=27.13  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=17.2

Q ss_pred             cCCCCeeeCCCCcCcccCCccc
Q 040468          512 LKQIESLDLSYNLLHGKIPSQL  533 (543)
Q Consensus       512 l~~L~~L~l~~n~i~~~~~~~~  533 (543)
                      +++|+.|++++|.|....++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4789999999999995544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	543
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-42
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-05
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  171 bits (433), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 212/457 (46%), Gaps = 59/457 (12%)
Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQ 154
           L  LD+S N F G +P   G+          S N F+G +P  +   M+ L  LD+S+N+
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSK--KFSLTNLMTLQLDGNNFSGEIPESL 212
            +GE+PE +     SL  L LS+N+  G I     +     L  L L  N F+G+IP +L
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
           S C  L  L+LS N+LSG IP  LG+LS L D+ +  N LEG IP E   ++ L  L L 
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
            N + G +PS  S                       +  NL  + LS N L G IP  I 
Sbjct: 472 FNDLTGEIPSGLS-----------------------NCTNLNWISLSNNRLTGEIPKWIG 508
Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
           RL  L+ L L+NN   G IP +L   + +  +DL+ N  +G IP  +   S         
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------- 559
Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
                  G+ +    +  +            C  G    L++ G R+     E+  + +T
Sbjct: 560 -------GKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRS-----EQLNRLST 606
Query: 453 KN----MSYYYQGRIL------TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502
           +N     S  Y G          SM  +D+S N L+G IP +IG +  +  LNL HN+++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 503 GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
           G+IP    +L+ +  LDLS N L G+IP  ++ LT L
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 86/387 (22%)
Query: 222 YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG----LIPIEFC---------------- 261
           +LS++H++G +  +  + S L  + +  N+L G    L  +  C                
Sbjct: 80  FLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 262 -------QLRFLRILDLSNNTIFGT--LPSCFSPAYIEQVHL--SKNKIEGRLESVIPDS 310
                  +L  L +LDLS N+I G   +    S    E  HL  S NKI G ++  +   
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 196
Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
            NL  LD+S N     IP  +     L +L ++ N + G+    +    E++L+++S N 
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 371 LSGHIPPCLVNT----SLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR 426
             G IPP  + +    SL+E              + +G    +   A +  T    S   
Sbjct: 256 FVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG---IDLSCNKLTGEIPT 483
            Y     + GS +      E++  ++ N S       L  M G   +DLS N+ +GE+P 
Sbjct: 303 FYGAVPPFFGSCS----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 484 QIGYLTK---------------------------IHALNLSHNNLTGTIPTTFSNLKQIE 516
            +  L+                            +  L L +N  TG IP T SN  ++ 
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
           SL LS+N L G IPS L  L+ L   +
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLK 445

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/457 (31%), Positives = 212/457 (46%), Gaps = 59/457 (12%)
Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQ 154
           L  LD+S N F G +P   G+          S N F+G +P  +   M+ L  LD+S+N+
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHIFSK--KFSLTNLMTLQLDGNNFSGEIPESL 212
            +GE+PE +     SL  L LS+N+  G I     +     L  L L  N F+G+IP +L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
           S C  L  L+LS N+LSG IP  LG+LS L D+ +  N LEG IP E   ++ L  L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
            N + G +PS  S                       +  NL  + LS N L G IP  I 
Sbjct: 475 FNDLTGEIPSGLS-----------------------NCTNLNWISLSNNRLTGEIPKWIG 511
Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
           RL  L+ L L+NN   G IP +L   + +  +DL+ N  +G IP  +   S         
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------- 562
Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
                  G+ +    +  +            C  G    L++ G R+     E+  + +T
Sbjct: 563 -------GKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRS-----EQLNRLST 609
Query: 453 KN----MSYYYQGRIL------TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT 502
           +N     S  Y G          SM  +D+S N L+G IP +IG +  +  LNL HN+++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 503 GTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
           G+IP    +L+ +  LDLS N L G+IP  ++ LT L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 86/387 (22%)
Query: 222 YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG----LIPIEFC---------------- 261
           +LS++H++G +  +  + S L  + +  N+L G    L  +  C                
Sbjct: 83  FLSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 262 -------QLRFLRILDLSNNTIFG--TLPSCFSPAYIEQVHL--SKNKIEGRLESVIPDS 310
                  +L  L +LDLS N+I G   +    S    E  HL  S NKI G ++  +   
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199
Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
            NL  LD+S N     IP  +     L +L ++ N + G+    +    E++L+++S N 
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 371 LSGHIPPCLVNT----SLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR 426
             G IPP  + +    SL+E              + +G    +   A +  T    S   
Sbjct: 259 FVGPIPPLPLKSLQYLSLAE-------------NKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG---IDLSCNKLTGEIPT 483
            Y     + GS +      E++  ++ N S       L  M G   +DLS N+ +GE+P 
Sbjct: 306 FYGAVPPFFGSCS----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 484 QIGYLTK---------------------------IHALNLSHNNLTGTIPTTFSNLKQIE 516
            +  L+                            +  L L +N  TG IP T SN  ++ 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 517 SLDLSYNLLHGKIPSQLTVLTTLAVFR 543
           SL LS+N L G IPS L  L+ L   +
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLK 448

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 28/244 (11%)
Query: 135 IPSSFADMQMLARLDIS-YNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTN 193
           IPSS A++  L  L I   N L G IP  +A                          LT 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
           L  L +   N SG IP+ LS+ + L  L  S N LSG +P  + +L  LV I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 254 GLIPIEFCQL-RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPN 312
           G IP  +    +    + +S N + G +P  F+   +  V LS+N +EG    +     N
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 313 LVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
              + L+ N L   +  ++     L+ L L NN I G +P  L QLK +  +++S NNL 
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 373 GHIP 376
           G IP
Sbjct: 282 GEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 51/260 (19%)
Query: 256 IPIEFCQLRFLRILDLSN-NTIFGTLPSCFSPAYIEQVH---LSKNKIEGRLESVIPDSP 311
           IP     L +L  L +   N + G +P     A + Q+H   ++   + G +   +    
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV-QLIDLSHNN 370
            LVTLD SYN L G++P  I  LP L  +    N I G IP       ++   + +S N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 371 LSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPY 430
           L+G IPP   N +L                               A    S +   G   
Sbjct: 186 LTGKIPPTFANLNL-------------------------------AFVDLSRNMLEGDAS 214
Query: 431 ALDYVGSRTPPMGKEETIQ--FTTKNMSYYYQGRILTS--MFGIDLSCNKLTGEIPTQIG 486
            L          G ++  Q     KN   +  G++  S  + G+DL  N++ G +P  + 
Sbjct: 215 VL---------FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 487 YLTKIHALNLSHNNLTGTIP 506
            L  +H+LN+S NNL G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLV 380
           N L G IP  I +L QL YL + +  + G IP  L Q+K +  +D S+N LSG +PP + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 381 NTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTP 440
            +SL       +   +    R SG       +     T  + S  R        +  + P
Sbjct: 146 -SSLPN-----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--------LTGKIP 191
Query: 441 PMGKEETIQFT--TKNMSYYYQGRILTSMFGID-------LSCNKLTGEIPTQIGYLTKI 491
           P      + F   ++NM    +G   + +FG D       L+ N L  ++  ++G    +
Sbjct: 192 PTFANLNLAFVDLSRNM---LEGDA-SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           + L+L +N + GT+P   + LK + SL++S+N L G+IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLT 534
           N L G IP  I  LT++H L ++H N++G IP   S +K + +LD SYN L G +P  ++
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 535 VLTTLA 540
            L  L 
Sbjct: 147 SLPNLV 152

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 94  QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
           + L TL V++N  Q  +P+ +   L  L E  L RN      P  F  +  L  L + YN
Sbjct: 85  KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 154 QLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-SL 212
           +L   +P+ +     SL+ L L NN L+         LT L TL+LD N     +PE + 
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Query: 213 SKCRRLGGLYLSDN 226
               +L  L L +N
Sbjct: 202 DSLEKLKMLQLQEN 215

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 39/251 (15%)
Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
           D+   ++  ++P   A       +L L NN +         +L NL TL L  N  S   
Sbjct: 40  DLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 209 PESLSKCRRLGGLYLSDNHLSG---EIPRWLGNLSFLVDIIMPN-----NNLEGLIPIEF 260
           P + +   +L  LYLS N L     ++P+ L  L    + I        N L  +I +E 
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 261 C------------------QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR 302
                              +L ++RI D    T   T+P    P+  E +HL  NKI   
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTE-LHLDGNKITKV 207
Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
             + +    NL  L LS+N +       +   P L  L L NN +  ++P  L   K +Q
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 363 LIDLSHNNLSG 373
           ++ L +NN+S 
Sbjct: 267 VVYLHNNNISA 277

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 39/251 (15%)
Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
           D+   ++  ++P   A       +L L NN +         +L NL TL L  N  S   
Sbjct: 40  DLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 209 PESLSKCRRLGGLYLSDNHLSG---EIPRWLGNLSFLVDIIMPN-----NNLEGLIPIEF 260
           P + +   +L  LYLS N L     ++P+ L  L    + I        N L  +I +E 
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 261 C------------------QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR 302
                              +L ++RI D    T   T+P    P+  E +HL  NKI   
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTE-LHLDGNKITKV 207
Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
             + +    NL  L LS+N +       +   P L  L L NN +  ++P  L   K +Q
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266
Query: 363 LIDLSHNNLSG 373
           ++ L +NN+S 
Sbjct: 267 VVYLHNNNISA 277

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE 231
           +L L NN +          L +L  L L  N  S    ++ S  R+L  LY+S NHL  E
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 232 IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--FGTLPSCFS---- 285
           IP  L   S LV++ + +N +  +    F  LR +  +++  N +   G  P  F     
Sbjct: 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 286 -----------------PAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCLHGSI 327
                            P  + ++HL  NKI+   LE ++  S  L  L L +N +    
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIE 233
Query: 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
              +  LP L  L L NN +   +P  L  LK +Q++ L  NN++
Sbjct: 234 NGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
           L  L    L  NA       +F D+  L  L +  N+++  +PER   G  SL+ L L  
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 178 NSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
           N +  H+    F  L  LMTL L  NN S    E+L+  R L  L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
           L  L    L  NA       +F D+  L  L +  N+++  +PER   G  SL+ L L  
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 178 NSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
           N +  H+    F  L  LMTL L  NN S    E+L+  R L  L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 179/446 (40%), Gaps = 61/446 (13%)
Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
           HIP ++ + +  L   NL+ N      P++F     LA LD  +N ++   PE +     
Sbjct: 18  HIPDDLPSNITVL---NLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 169 SLEILALSNNSLQGHIFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
            L++L L +N L   I  + F   TNL  L L  N+            + L  L LS N 
Sbjct: 74  LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL-----RILDLSNNTIFGTLPS 282
           LS      LG    L ++         ++ +   +L FL     R LDLS+N +    P 
Sbjct: 133 LSSTK---LGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG 189
Query: 283 CFSPAYIEQVHLSKNKIEGRLESVIPDSPNL---VTLDLSYNCLHGSIPNRIDRLPQLSY 339
           CF                G+L +++ ++  L   +T  L +   + SI N          
Sbjct: 190 CFQTI-------------GKLFALLLNNAQLNPHLTEKLCWELSNTSIQN---------- 226
Query: 340 LLLANNYIEGEIPVQLCQLKEVQL--IDLSHNNL------SGHIPPCLVNTSLSEGHDEP 391
           L LANN +          LK   L  +DLS+NNL      S    P L   SL   + + 
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 392 VAPTSS---SCGRASGYASSYTKTALN-ATTPFSSSCGRGYPYALDYVGSRTPPMGKEET 447
           ++P S    S  R      ++TK +++ A+ P        +   L+Y+      +   ++
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKS 346
Query: 448 IQFT-TKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP 506
             FT   ++ Y    +  TS+         LT E    + + + +  LNL+ N+++    
Sbjct: 347 NTFTGLVSLKYLSLSKTFTSL-------QTLTNETFVSLAH-SPLLTLNLTKNHISKIAN 398
Query: 507 TTFSNLKQIESLDLSYNLLHGKIPSQ 532
            TFS L Q+  LDL  N +  K+  Q
Sbjct: 399 GTFSWLGQLRILDLGLNEIEQKLSGQ 424

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	543
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-125
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-70
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  383 bits (987), Expect = e-125
 Identities = 154/544 (28%), Positives = 233/544 (42%), Gaps = 36/544 (6%)

Query: 14  YNSLTPKF------QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE 67
            N ++          L  + +S        P FL     L++ ++S   LSG+F   +  
Sbjct: 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS- 244

Query: 68  NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS 127
             T L+ L +++N   G    P    + L  L ++ N F G IP  +      L   +LS
Sbjct: 245 TCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 128 RNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSK 187
            N F G++P  F    +L  L +S N  +GE+P         L++L LS N   G +   
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 188 KFSLT-NLMTLQLDGNNFSGEIPESLSKCRR--LGGLYLSDNHLSGEIPRWLGNLSFLVD 244
             +L+ +L+TL L  NNFSG I  +L +  +  L  LYL +N  +G+IP  L N S LV 
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 245 IIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRL 303
           + +  N L G IP     L  LR L L  N + G +P        +E + L  N + G +
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
            S + +  NL  + LS N L G IP  I RL  L+ L L+NN   G IP +L   + +  
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 364 IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSS 423
           +DL+ N  +G IP  +   S     +                   +    L         
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ----- 597

Query: 424 CGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYY-----YQGRILTSMFGIDLSCNKLT 478
                       G R+  + +  T          Y            SM  +D+S N L+
Sbjct: 598 ------------GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 479 GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTT 538
           G IP +IG +  +  LNL HN+++G+IP    +L+ +  LDLS N L G+IP  ++ LT 
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 539 LAVF 542
           L   
Sbjct: 706 LTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  258 bits (662), Expect = 2e-77
 Identities = 116/370 (31%), Positives = 170/370 (45%), Gaps = 18/370 (4%)

Query: 23  LTSISLSGYIDGGTFPKF--LYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
           LTS+ LS     G       L     LK  N+S   L             +LE L L+ N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 81  SLFGSF---RMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS 137
           S+ G+     +      +L  L +S N   G + V   +    L   ++S N F+  IP 
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIP- 217

Query: 138 SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTL 197
              D   L  LDIS N+L+G+    ++  C  L++L +S+N   G I      L +L  L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274

Query: 198 QLDGNNFSGEIPESLS-KCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256
            L  N F+GEIP+ LS  C  L GL LS NH  G +P + G+ S L  + + +NN  G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 257 PIE-FCQLRFLRILDLSNNTIFGTLPSCFS--PAYIEQVHLSKNKIEGRLESVIPDSP-- 311
           P++   ++R L++LDLS N   G LP   +   A +  + LS N   G +   +  +P  
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
            L  L L  N   G IP  +    +L  L L+ NY+ G IP  L  L +++ + L  N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 372 SGHIPPCLVN 381
            G IP  L+ 
Sbjct: 455 EGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  239 bits (613), Expect = 1e-70
 Identities = 103/360 (28%), Positives = 171/360 (47%), Gaps = 12/360 (3%)

Query: 22  QLTSISLSGYIDGGTFPKFL--YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLAN 79
            L ++ LS     G     L    ++ L+   L +   +G+ P  L  N + L +L L+ 
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSF 427

Query: 80  NSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSF 139
           N L G+    + S  KL  L +  N  +G IP E+  Y+  L    L  N   G IPS  
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGL 486

Query: 140 ADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL 199
           ++   L  + +S N+LTGEIP+ +     +L IL LSNNS  G+I ++     +L+ L L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN--NLEGLIP 257
           + N F+G IP ++ K        ++ N ++G+   ++ N     +     N    +G+  
Sbjct: 546 NTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
            +  +L      ++++    G     F     +  + +S N + G +   I   P L  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 317 DLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           +L +N + GSIP+ +  L  L+ L L++N ++G IP  +  L  +  IDLS+NNLSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  231 bits (592), Expect = 1e-67
 Identities = 89/328 (27%), Positives = 152/328 (46%), Gaps = 16/328 (4%)

Query: 68  NNTNLETLLLANNSL---FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124
            +  + ++ L++  L   F +    + S   L +L +SN+   G +          L   
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 125 NLSRNAFNGSIPS--SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182
           +LSRN+ +G + +  S      L  L++S N L             SLE+L LS NS+ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 183 HI---FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNL 239
                +        L  L + GN  SG++   +S+C  L  L +S N+ S  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 240 SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKI 299
           S L  + +  N L G           L++L++S+N   G +P     + ++ + L++NK 
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKF 281

Query: 300 EGRL-ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQ 357
            G + + +      L  LDLS N  +G++P        L  L L++N   GE+P+  L +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 358 LKEVQLIDLSHNNLSGHIPPCLVNTSLS 385
           ++ ++++DLS N  SG +P  L N S S
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSAS 369

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (492), Expect = 1e-53
 Identities = 84/297 (28%), Positives = 129/297 (43%), Gaps = 32/297 (10%)

Query: 35  GTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQ 94
           G  P+ L +   L+   L   +L+GE P+ L  N TNL  + L+NN L G     I   +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 95  KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ 154
            LA L +SNN F G+IP E+G     L+  +L+ N FNG+IP++           I+ N 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANF 569

Query: 155 LTGEIPERMATGCFSLEILALSNN--SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
           + G+    +       +    + N    QG    +   L+      +    + G    + 
Sbjct: 570 IAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
                +  L +S N LSG IP+ +G++ +L  + + +N++ G IP E   LR L ILDLS
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
           +N + G +P   S                           L  +DLS N L G IP 
Sbjct: 689 SNKLDGRIPQAMS-----------------------ALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (286), Expect = 9e-27
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMP--IHSHQKLATLDVSNNFFQG 108
            ++   ++G+   ++ +N+   +    A N L         ++        ++++  + G
Sbjct: 564 KIAANFIAGKRYVYI-KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
           H           +M  ++S N  +G IP     M  L  L++ +N ++G IP+ +     
Sbjct: 623 HTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLR 680

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES 211
            L IL LS+N L G I     +LT L  + L  NN SG IPE 
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 4e-17
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            + +  + LS N L+G IP+ +G L+K+  L L  N L G IP     +K +E+L L +N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 524 LLHGKIPSQLTVLTTLAVFR 543
            L G+IPS L+  T L    
Sbjct: 477 DLTGEIPSGLSNCTNLNWIS 496

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 5e-16
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+ +  + L  N L GEIP ++ Y+  +  L L  N+LTG IP+  SN   +  + LS N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 524 LLHGKIPSQLTVLTTLAVFR 543
            L G+IP  +  L  LA+ +
Sbjct: 501 RLTGEIPKWIGRLENLAILK 520

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-15
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           + ++  + L  N LTGEIP+ +   T ++ ++LS+N LTG IP     L+ +  L LS N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 524 LLHGKIPSQLTVLTTLAVFR 543
              G IP++L    +L    
Sbjct: 525 SFSGNIPAELGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPT--QIGYLTKIHALNLSHNNLTGTIPTT-FSNLKQIESLDL 520
             S+  +DLS N L+G + T   +G  + +  LN+S N L      +    L  +E LDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 521 SYNLLHGKIPSQLTVLTTL 539
           S N + G       +    
Sbjct: 159 SANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 7e-11
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT--TFSNLKQIESLDLS 521
           LT +  + LS + + G +         + +L+LS N+L+G + T  +  +   ++ L++S
Sbjct: 76  LTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 522 YNLLHGKIP----SQLTVLTTL 539
            N L          +L  L  L
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGY-LTKIHALNLSHNNLTGTIPTTF---SNLKQIESLD 519
            + +  +++S N L        G  L  +  L+LS N+++G     +       +++ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 520 LSYNLLHGKIP-SQLTVLTTL 539
           +S N + G +  S+   L  L
Sbjct: 185 ISGNKISGDVDVSRCVNLEFL 205

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 469 GIDLSCNKLT---GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
            IDLS   L      + + +  LT + +L LS++++ G++   F     + SLDLS N L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 526 HGKIP-----SQLTVLTTL 539
            G +         + L  L
Sbjct: 113 SGPVTTLTSLGSCSGLKFL 131

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTT--FSNL 512
           DLS NKL G IP  +  LT +  ++LS+NNL+G IP    F   
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 491 IHALNLSHNNLT---GTIPTTFSNLKQIESLDLSYNLLHGKIPS--QLTVLTTL 539
           + +++LS   L      + ++  +L  +ESL LS + ++G +        LT+L
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (506), Expect = 2e-59
 Identities = 76/265 (28%), Positives = 113/265 (42%), Gaps = 6/265 (2%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE--IPERMATGCFSLEILALSN-NSLQ 181
           +     + G +  +      +  LD+S   L     IP  +A     L  L +   N+L 
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLV 90

Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
           G I      LT L  L +   N SG IP+ LS+ + L  L  S N LSG +P  + +L  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 242 LVDIIMPNNNLEGLIPIEFCQLRFL-RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIE 300
           LV I    N + G IP  +     L   + +S N + G +P  F+   +  V LS+N +E
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 301 GRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360
           G    +     N   + L+ N L   +   +     L+ L L NN I G +P  L QLK 
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 361 VQLIDLSHNNLSGHIPPCLVNTSLS 385
           +  +++S NNL G IP         
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (487), Expect = 1e-56
 Identities = 74/271 (27%), Positives = 119/271 (43%), Gaps = 8/271 (2%)

Query: 79  NNSLFGSFRMPIHSHQKLATLDVSNNFFQG--HIPVEIGTYLPGLMEFNLS-RNAFNGSI 135
           N +  G          ++  LD+S         IP  +   LP L    +   N   G I
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93

Query: 136 PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLM 195
           P + A +  L  L I++  ++G IP+ ++    +L  L  S N+L G +     SL NL+
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 196 TLQLDGNNFSGEIPESLSKCRRLG-GLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG 254
            +  DGN  SG IP+S     +L   + +S N L+G+IP    NL+ L  + +  N LEG
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211

Query: 255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLV 314
              + F   +  + + L+ N++   L        +  + L  N+I G L   +     L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345
           +L++S+N L G IP     L +      ANN
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (475), Expect = 7e-55
 Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 18/260 (6%)

Query: 134 SIPSSFADMQMLA----RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG--HIFSK 187
            I     +   L+      D       G + +   T  + +  L LS  +L     I S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 188 KFSLTNLMTLQL-DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
             +L  L  L +   NN  G IP +++K  +L  LY++  ++SG IP +L  +  LV + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS--PAYIEQVHLSKNKIEGRLE 304
              N L G +P     L  L  +    N I G +P  +         + +S+N++ G+  
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-- 189

Query: 305 SVIPDS---PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV 361
             IP +    NL  +DLS N L G              + LA N +  ++  ++   K +
Sbjct: 190 --IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246

Query: 362 QLIDLSHNNLSGHIPPCLVN 381
             +DL +N + G +P  L  
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  162 bits (413), Expect = 5e-46
 Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 34/265 (12%)

Query: 23  LTSISLSGYID-GGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           L  + + G  +  G  P  +     L    ++H N+SG  P++L    + +         
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQI--------- 124

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
                       + L TLD S N   G +P  I   LP L+      N  +G+IP S+  
Sbjct: 125 ------------KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGS 171

Query: 142 MQMLAR-LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD 200
              L   + IS N+LTG+IP        +L  + LS N L+G       S  N   + L 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEF 260
            N+ + ++   +   + L GL L +N + G +P+ L  L FL  + +  NNL G IP   
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 261 CQLRFLRILDLSNNTIF--GTLPSC 283
             L+   +   +NN       LP+C
Sbjct: 289 -NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (331), Expect = 2e-34
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGE--IPRWLGNLSFLVDIIMPN-NNLEGLIPI 258
             + G + ++ ++  R+  L LS  +L     IP  L NL +L  + +   NNL G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318
              +L  L  L +++  + G +P                    ++         LVTLD 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFL----------------SQI-------KTLVTLDF 132

Query: 319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE-VQLIDLSHNNLSGHIPP 377
           SYN L G++P  I  LP L  +    N I G IP       +    + +S N L+G IPP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 378 CLVNTSLSE 386
              N +L+ 
Sbjct: 193 TFANLNLAF 201

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  110 bits (277), Expect = 5e-27
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 31/188 (16%)

Query: 207 EIPESLSKCRRL----GGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG--LIPIEF 260
           +I + L     L          +    G +         + ++ +   NL     IP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 261 CQLRFLRILDLSN-NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319
             L +L  L +   N + G +P                    +L         L  L ++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKL-------TQLHYLYIT 109

Query: 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
           +  + G+IP+ + ++  L  L  + N + G +P  +  L  +  I    N +SG IP   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 380 VN-TSLSE 386
            + + L  
Sbjct: 170 GSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (270), Expect = 4e-26
 Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 53/240 (22%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
            L ++  S     GT P  +    +L         +SG  P+     +    ++ ++ N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
           L G                         IP         L   +LSRN   G     F  
Sbjct: 186 LTGK------------------------IPPTFANL--NLAFVDLSRNMLEGDASVLFGS 219

Query: 142 MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201
            +   ++ ++ N L  ++ +             +                 NL  L L  
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK-------------VGL-------------SKNLNGLDLRN 253

Query: 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261
           N   G +P+ L++ + L  L +S N+L GEIP+  GNL         NN      P+  C
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 464 LTSMFGIDLS-CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  + +   N L G IP  I  LT++H L ++H N++G IP   S +K + +LD SY
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L G +P  ++ L  L
Sbjct: 135 NALSGTLPPSISSLPNL 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 19/79 (24%), Positives = 38/79 (48%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT +  + ++   ++G IP  +  +  +  L+ S+N L+GT+P + S+L  +  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 524 LLHGKIPSQLTVLTTLAVF 542
            + G IP      + L   
Sbjct: 160 RISGAIPDSYGSFSKLFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             +   I L+ N L  ++  ++G    ++ L+L +N + GT+P   + LK + SL++S+N
Sbjct: 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 524 LLHGKIPS 531
            L G+IP 
Sbjct: 279 NLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 7e-17
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ-IESLDLSY 522
           + ++  +D S N L+G +P  I  L  +  +    N ++G IP ++ +  +   S+ +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 523 NLLHGKIPSQL 533
           N L GKIP   
Sbjct: 184 NRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + +S N+LTG+IP     L  +  ++LS N L G     F + K  + + L+ N L   +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 530 PS--QLTVLTTL 539
                   L  L
Sbjct: 238 GKVGLSKNLNGL 249

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 469 GIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT--IPTTFSNLKQIESLDLS-YNLL 525
             D       G +        +++ L+LS  NL     IP++ +NL  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 526 HGKIPSQLTVLTTLAVFR 543
            G IP  +  LT L    
Sbjct: 90  VGPIPPAIAKLTQLHYLY 107

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (452), Expect = 8e-49
 Identities = 64/405 (15%), Positives = 126/405 (31%), Gaps = 45/405 (11%)

Query: 13  HYNSLT---PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENN 69
             +            + +        T      +  DL +  + +     + P +L    
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-AL 272

Query: 70  TNLETLLLANNSLFGSFRMP--------IHSHQKLATLDVS-NNFFQGHIPVEIGTYLPG 120
             ++ + +A N      ++             +K+  + +  NN     +   +   +  
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKK 331

Query: 121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180
           L       N   G +P+ F     LA L+++YNQ+T  IP         +E L+ ++N L
Sbjct: 332 LGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL 389

Query: 181 QGHIFSKKF-SLTNLMTLQLDGNNFSG-------EIPESLSKCRRLGGLYLSDNHLSGEI 232
           +         S++ +  +    N            +  +  K   +  + LS+N +S   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 233 PRWLGNLSFLVDIIMPNNNLEGL-------IPIEFCQLRFLRILDLSNNTIFGTLPSCFS 285
                  S L  I +  N L  +           F     L  +DL  N +   L   F 
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFR 508

Query: 286 PA---YIEQVHLSKNKIEGRLESVIPDSPNLVTL------DLSYNCLHGSIPNRIDRLPQ 336
                Y+  + LS N       +   +S  L         D   N      P  I   P 
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 337 LSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
           L+ L + +N I   +  ++     + ++D+  N         +  
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (445), Expect = 7e-48
 Identities = 62/410 (15%), Positives = 130/410 (31%), Gaps = 33/410 (8%)

Query: 1   TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGE 60
            F+ E+         SL    ++T +SL G+   G  P  +    +L+   L        
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 61  FPNWLVE---NNTNLETLLLANNSLFGSF--RMPIHSHQKLATLDVSNNFFQGHIPVEIG 115
              +  +    N + E           +F    P      L    ++++  Q  I     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 116 TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
             L    +     N     +  +   +  L +  +  +    E        C + E    
Sbjct: 181 ITLK-DTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENS 232

Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL------- 228
                      K  +L +L  +++       ++P  L     +  + ++ N         
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 229 -SGEIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
              +          +  I +  NNL+   +     +++ L +L+   N + G LP+  S 
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR--IDRLPQLSYLLLAN 344
             +  ++L+ N+I     +    +  +  L  ++N L   IPN      +  +S +  + 
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 345 NYIEG-------EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN-TSLSE 386
           N I          +     +   V  I+LS+N +S          + LS 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (432), Expect = 5e-46
 Identities = 65/387 (16%), Positives = 119/387 (30%), Gaps = 35/387 (9%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWL-------VENNTNLET 74
            LT + +    +    P FL    +++  N++                         ++ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 75  LLLANNSLF-GSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
           + +  N+L        +   +KL  L+   N  +G +P   G+    L   NL+ N    
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITE 367

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG-------HIFS 186
              +     + +  L  ++N+L        A     +  +  S N +          +  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 187 KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG-------EIPRWLGNL 239
             F   N+ ++ L  N  S    E  S    L  + L  N L+        +      N 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 240 SFLVDIIMPNNNLEGLIP-IEFCQLRFLRILDLSNNTI------FGTLPSCFSPAYIEQV 292
             L  I +  N L  L        L +L  +DLS N+            +        Q 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
               N+        I   P+L  L +  N +   +  +I   P +S L + +N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 353 VQLCQLKEVQLIDLSHNNLSGHIPPCL 379
             +C   E  +  L ++     I  C 
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (417), Expect = 5e-44
 Identities = 61/368 (16%), Positives = 116/368 (31%), Gaps = 47/368 (12%)

Query: 51  NLSHLNLSGEFPNWLVENN--TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
            L    +     +  V  N     E         + +  +   + + L  ++V N     
Sbjct: 207 KLRQFYMGN---SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 109 HIPVEIGTYLPGLMEFNLSRNAF--------NGSIPSSFADMQMLARLDISYNQL-TGEI 159
            +P  +   LP +   N++ N          +    +     + +  + I YN L T  +
Sbjct: 264 KLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 160 PERMATGCFSLEILALSNNSLQGHI--FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRR 217
              +      L +L    N L+G +  F        L +L L  N  +           +
Sbjct: 323 ETSLQ-KMKKLGMLECLYNQLEGKLPAFGS---EIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 218 LGGLYLSDNHLSGEIPRWL--GNLSFLVDIIMPNNNLEGL-------IPIEFCQLRFLRI 268
           +  L  + N L   IP      ++S +  I    N +  +       +     +   +  
Sbjct: 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 269 LDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSP-------NLVTLDLSY 320
           ++LSNN I       FS    +  ++L  N +    ++ + D          L ++DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 321 NCLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLI------DLSHNNLSG 373
           N L     + R   LP L  + L+ N      P Q      ++        D   N    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 374 HIPPCLVN 381
             P  +  
Sbjct: 557 EWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 29/249 (11%), Positives = 68/249 (27%), Gaps = 71/249 (28%)

Query: 322 CLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG----HIP 376
            + G+ P   ++   +++ L L      G +P  + QL E++++ L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 377 PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVG 436
             +      E   +                                         + Y  
Sbjct: 127 KGISANMSDEQKQK---------------------------------------MRMHYQK 147

Query: 437 SRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG-------IDLSCNKLTGEIPTQIGYLT 489
           +      +E+        ++   Q + +            I    N +T  +   +  LT
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT 206

Query: 490 KIHALNLSHNNLTG-------------------TIPTTFSNLKQIESLDLSYNLLHGKIP 530
           K+    + ++                       T    + NLK +  +++       K+P
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 531 SQLTVLTTL 539
           + L  L  +
Sbjct: 267 TFLKALPEM 275

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 464 LTSMFGIDLSCNKLT--------GEIPTQIGYLTKIHALNLSHNNL-TGTIPTTFSNLKQ 514
           L  M  I+++CN+           +         KI  + + +NNL T  + T+   +K+
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 515 IESLDLSYNLLHGKIPS--QLTVLTTL 539
           +  L+  YN L GK+P+      L +L
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-------TIPTTFSNLKQIE 516
             ++  I+LS N+++          + + ++NL  N LT             F N   + 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 517 SLDLSYNLLHGKIP-----SQLTVLTTL 539
           S+DL +N L   +      + L  L  +
Sbjct: 492 SIDLRFNKLTK-LSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 3/78 (3%)

Query: 462 RILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           +        D   N+   E P  I     +  L +  N++         N+     LD+ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIK 595

Query: 522 YNLLHGKIPSQLTVLTTL 539
            N       S +      
Sbjct: 596 DNPNISIDLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           +  +  ++   N+L G++P   G   K+ +LNL++N +T          +Q+E+L  ++N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 524 LLHGKIPS-----QLTVLTTL 539
            L   IP+      ++V++ +
Sbjct: 388 KLKY-IPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 14/90 (15%)

Query: 464 LTSMFGIDLSCNKLTG-------EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIE 516
           ++ M  ID S N++          +         + ++NLS+N ++      FS    + 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 517 SLDLSYNLLHG-------KIPSQLTVLTTL 539
           S++L  N+L                    L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLL 490

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT--------GTIPTTFSNLKQI 515
           L  +  +++       ++PT +  L ++  +N++ N                     ++I
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 516 ESLDLSYN-LLHGKIPSQLTVLTTL 539
           + + + YN L    + + L  +  L
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKL 332

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 464 LTSMFGIDLSCNKLTGEIP--TQIGYLTKIHALNLSHNNLTG-------TIPTTFSNLKQ 514
              +  +  + NKL   IP       ++ + A++ S+N +          +  T      
Sbjct: 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 515 IESLDLSYNLLHGKIPSQLTVLTTL 539
           + S++LS N +        +  + L
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPL 459

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 6/71 (8%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--K 528
           +    +       +   L  +  + + +      +PT    L +++ ++++ N      +
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 529 IPSQLTVLTTL 539
           +      L   
Sbjct: 291 LKDDWQALADA 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGY--LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
              +  IDL  NKLT  +        L  +  ++LS+N+ +   PT   N   ++   + 
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 522 YNL------LHGKIPSQLTVLTTL 539
                       + P  +T+  +L
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSL 568

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 6/80 (7%), Positives = 21/80 (26%), Gaps = 1/80 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            + +    ++ +     I        K   +    NN+T  +      L ++    +  +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216

Query: 524 LLHGKIPSQLTVLTTLAVFR 543
               +   +          +
Sbjct: 217 PFVAENICEAWENENSEYAQ 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 453 KNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL 512
           KN S    G    + +  +   +    +    +    ++  L+L     +G +P     L
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL 104

Query: 513 KQIESLDLSYNLLHG----KIPSQLTVLTTL 539
            ++E L L  +          P  ++   + 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSD 135

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             S+  + +  N +   +  +I     I  L++  N       +      +     L Y+
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (443), Expect = 2e-47
 Identities = 75/386 (19%), Positives = 123/386 (31%), Gaps = 38/386 (9%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSG----EFPNWLVENNTNLE 73
            + ++SLS          TF         LK  NL+ L+LS        N        LE
Sbjct: 223 SIRNLSLSNSQLSTTSNTTF-------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 74  TLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH--------IPVEIGTYLPGLMEFN 125
              L  N++   F   +H    +  L++  +F +          I      +L  L   N
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA---TGCFSLEILALSNNSLQG 182
           +  N   G   + F  +  L  L +S +  +                L IL L+ N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGEIP-ESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
                   L +L  L L  N    E+  +       +  +YLS N            +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 242 LVDIIMPNNNLEGL--IPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNK 298
           L  +++    L+ +   P  F  LR L ILDLSNN I             +E + L  N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 299 IE--------GRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE 350
           +         G     +    +L  L+L  N            L +L  + L  N +   
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 351 IPVQLCQLKEVQLIDLSHNNLSGHIP 376
                     ++ ++L  N ++    
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 4e-47
 Identities = 73/352 (20%), Positives = 116/352 (32%), Gaps = 27/352 (7%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  LNL      +  +      TNL  L L +NS+      P    + L TLD+S+N  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQM--LARLDISYNQLTGEIPERMA 164
                      L  L E  LS N                 L +L++S NQ+    P    
Sbjct: 134 SSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 165 TGCFSLEILALSNNSLQGHI---FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCR--RLG 219
                L  L L+N  L   +      + + T++  L L  +  S     +    +   L 
Sbjct: 193 -AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 220 GLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT 279
            L LS N+L+         L  L    +  NN++ L       L  +R L+L  +    +
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 280 L---------PSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
           +            F     +E +++  N I G   ++     NL  L LS +        
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 330 RID----RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
                      L  L L  N I          L  ++++DL  N +   +  
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 2e-46
 Identities = 72/348 (20%), Positives = 127/348 (36%), Gaps = 23/348 (6%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           N++ LNL+       P       + L +L +  N++             L  L++ +N  
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
                     +   L E +L  N+      + F   + L  LD+S+N L+          
Sbjct: 86  SQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQ 143

Query: 167 CFSLEILALSNNSLQGHIFS--KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS 224
             +L+ L LSNN +Q         F+ ++L  L+L  N      P       RL GL+L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 225 DNHLSGEIPRWLG---NLSFLVDIIMPNNNLEGLIPIEFCQLRF--LRILDLSNNTIFGT 279
           +  L   +   L      + + ++ + N+ L       F  L++  L +LDLS N +   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 280 LPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI---------PN 329
               F+    +E   L  N I+      +    N+  L+L  +    SI           
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
               L  L +L + +N I G        L  ++ + LS++  S     
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  167 bits (425), Expect = 6e-45
 Identities = 73/358 (20%), Positives = 132/358 (36%), Gaps = 28/358 (7%)

Query: 51  NLSHLNLSG----EFPNWLVE--NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN 104
           NL  L LS        +  ++   N++L+ L L++N +        H+  +L  L ++N 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 105 FFQGHIPVEIGTYLPG--LMEFNLSRNAFNGSIPSSFADMQM--LARLDISYNQLTGEIP 160
                +  ++   L    +   +LS +  + +  ++F  ++   L  LD+SYN L     
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 161 ERMATGCFSLEILALSNNSLQG---HIFSKKFSLT------NLMTLQLDGNNFSGEIPES 211
           +  A     LE   L  N++Q    H     F++       +     +   +       S
Sbjct: 266 DSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE----FCQLRFLR 267
               + L  L + DN + G        L  L  + + N+                   L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 268 ILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLE-SVIPDSPNLVTLDLSYNCLHG 325
           IL+L+ N I       FS   ++E + L  N+I   L         N+  + LSYN    
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 326 SIPNRIDRLPQLSYLLLANNYIEG--EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
              N    +P L  L+L    ++     P     L+ + ++DLS+NN++      L  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 5e-40
 Identities = 57/294 (19%), Positives = 97/294 (32%), Gaps = 37/294 (12%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
               D S+      +P ++      +   NL+ N       ++F     L  LD+ +N +
Sbjct: 6   HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 156 TGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC 215
           +   PE                             L  L  L L  N  S    ++ + C
Sbjct: 62  SKLEPE------------LCQK-------------LPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT 275
             L  L+L  N +             L+ + + +N L         QL  L+ L LSNN 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 276 IFGTLPSCFS---PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI- 331
           I             + ++++ LS N+I+            L  L L+   L  S+  ++ 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 332 --DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL--IDLSHNNLSGHIPPCLVN 381
                  +  L L+N+ +          LK   L  +DLS+NNL+         
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (337), Expect = 3e-33
 Identities = 66/296 (22%), Positives = 93/296 (31%), Gaps = 39/296 (13%)

Query: 51  NLSHLNLSG------EFPNWLVEN--NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102
           NL +L+LS          N    +  ++ L  L L  N +             L  LD+ 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPER 162
            N     +  +    L  + E  LS N +     +SFA +  L RL +    L       
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 163 MA-TGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFS--------GEIPESLS 213
                  +L IL LSNN++          L  L  L L  NN +        G     L 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 214 KCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN 273
               L  L L  N           +L  L  I +  NNL  L    F     L+ L+L  
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 274 NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
           N I       F PA+                       NL  LD+ +N    +  +
Sbjct: 594 NLITSVEKKVFGPAF----------------------RNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (325), Expect = 1e-31
 Identities = 48/225 (21%), Positives = 78/225 (34%), Gaps = 10/225 (4%)

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
           S E+   S+  L           TN+  L L  N        + ++  +L  L +  N +
Sbjct: 5   SHEVADCSHLKLTQVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-A 287
           S   P     L  L  + + +N L  L    F     L  L L +N+I     + F    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 288 YIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID--RLPQLSYLLLANN 345
            +  + LS N +            NL  L LS N +       +D      L  L L++N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP----CLVNTSLSE 386
            I+   P     +  +  + L++  L   +       L NTS+  
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI 505
             +          Y  + L+ +  ++L  N            L ++  ++L  NNL    
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 506 PTTFSNLKQIESLDLSYNLLHGKIPSQL-TVLTTLAVF 542
            + F+N   ++SL+L  NL+              L   
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 13/70 (18%), Positives = 29/70 (41%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           ++L+ N+L           +++ +L++  N ++   P     L  ++ L+L +N L    
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 530 PSQLTVLTTL 539
                  T L
Sbjct: 90  DKTFAFCTNL 99

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 16/70 (22%), Positives = 26/70 (37%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +D+  N ++   P     L  +  LNL HN L+     TF+    +  L L  N +    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 530 PSQLTVLTTL 539
            +       L
Sbjct: 114 NNPFVKQKNL 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQ-IGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  +DL  N++  E+  Q    L  I  + LS+N        +F+ +  ++ L L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 523 NLLHG--KIPSQLTVLTTL 539
             L      PS    L  L
Sbjct: 464 VALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           ++L  N+L+        + T +  L+L  N++       F   K + +LDLS+N L    
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 530 PSQLTVLTTL 539
                 L  L
Sbjct: 138 LGTQVQLENL 147

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            T++  + L  N +             +  L+LSHN L+ T   T   L+ ++ L LS N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 524 LLHGKIPSQLTVL 536
            +      +L + 
Sbjct: 156 KIQALKSEELDIF 168

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +DLS N L         +L ++    L +NN+      +   L  +  L+L  +     I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 530 P 530
            
Sbjct: 313 S 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGY---LTKIHALNLSHNNLTGTIPTTFSNLK--QIESL 518
           +  +FG+ L+  +L   +  ++      T I  L+LS++ L+ T  TTF  LK   +  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 519 DLSYNLLHGKIPSQLTVLTTL 539
           DLSYN L+         L  L
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQL 274

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYL--TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
            TS+  + LS ++L+    T    L  T +  L+LS+NNL      +F+ L Q+E   L 
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 522 YNLLHGKIPSQLTVLTTL 539
           YN +       L  L  +
Sbjct: 281 YNNIQHLFSHSLHGLFNV 298

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS-NLKQIESLDLSY 522
           L  +  IDL  N L     +       + +LNL  N +T      F    + +  LD+ +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 523 NLLHGKIPSQL 533
           N       S  
Sbjct: 619 NPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 464 LTSMFGIDLSCNKLTG--EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           + S+  + L    L      P+    L  +  L+LS+NN+          L+++E LDL 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 522 YNLLH--------GKIPSQLTVLTTL 539
           +N L         G     L  L+ L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
            D S  KLT ++P  +   T I  LNL+HN L       F+   Q+ SLD+ +N +    
Sbjct: 9   ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 530 PSQLTVLTTL 539
           P     L  L
Sbjct: 66  PELCQKLPML 75

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYL--TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           L ++  + LS NK+      ++     + +  L LS N +    P  F  + ++  L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 522 YNLLHGKIPSQLTVLTTL 539
              L   +  +L +    
Sbjct: 204 NVQLGPSLTEKLCLELAN 221

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIG----YLTKIHALNLSHNNLTGTIPTTFSNLKQIESLD 519
           L ++  + LS +  +    T         + +H LNL+ N ++      FS L  +E LD
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 520 LSYNLLHGKIPSQ----LTVLTTL 539
           L  N +  ++  Q    L  +  +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS---NLKQIESLDLSYNLLH 526
           ++LS N++    P     + ++  L L++  L  ++            I +L LS + L 
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 527 GKIPSQLTVL 536
               +    L
Sbjct: 236 TTSNTTFLGL 245

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 466 SMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
           S     +S   L         +L  +  LN+  N++ G     F+ L  ++ L LS +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT--TFSNLKQ--IESLD 519
           L  +  +++  N + G        L  +  L+LS++  +    T  TF +L    +  L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 520 LSYNLLHGKIPSQLTVLTTL 539
           L+ N +        + L  L
Sbjct: 388 LTKNKISKIESDAFSWLGHL 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (427), Expect = 2e-45
 Identities = 70/348 (20%), Positives = 124/348 (35%), Gaps = 16/348 (4%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
            ++   L++L+   +    L    TN+ +  L + ++          +     L++ N  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCK 315

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG-EIPERMA 164
           F     +++ +         L+  +  G    S  D+  L  LD+S N L+      +  
Sbjct: 316 FGQFPTLKLKSLK------RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 165 TGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES-LSKCRRLGGLYL 223
            G  SL+ L LS N +   + S    L  L  L    +N       S     R L  L +
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGTLPS 282
           S  H           LS L  + M  N+ +    P  F +LR L  LDLS   +    P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 283 CFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLP-QLSYL 340
            F+  + ++ +++S N              +L  LD S N +  S    +   P  L++L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 341 LLANNYIEGEIPVQ--LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
            L  N        Q  L  +K+ + + +    +    P       +  
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (411), Expect = 2e-43
 Identities = 74/429 (17%), Positives = 138/429 (32%), Gaps = 70/429 (16%)

Query: 22  QLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLE----TLL 76
            L  ++++   I     P++  +  +L++ +LS   +   +   L      +     +L 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLD 183

Query: 77  LANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG--- 133
           L+ N +    +       +L  L + NNF   ++       L GL    L    F     
Sbjct: 184 LSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 134 ------------------------------SIPSSFADMQMLARLDISYNQLTGEIPERM 163
                                          I   F  +  ++   +    +        
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-- 300

Query: 164 ATGCFSLEILALSNNSL-------------------QGHIFSKKFSLTNLMTLQLDGN-- 202
            +  F  + L L N                      +G     +  L +L  L L  N  
Sbjct: 301 -SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE-FC 261
           +F G   +S      L  L LS N +   +      L  L  +   ++NL+ +     F 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 262 QLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRL-ESVIPDSPNLVTLDLS 319
            LR L  LD+S+          F+  + +E + ++ N  +      +  +  NL  LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
              L    P   + L  L  L +++N            L  +Q++D S N++       L
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 380 VN--TSLSE 386
            +  +SL+ 
Sbjct: 539 QHFPSSLAF 547

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (391), Expect = 1e-40
 Identities = 72/372 (19%), Positives = 122/372 (32%), Gaps = 26/372 (6%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           +L  + LS                 L    L+   +            ++L+ L+    +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETN 111

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
           L      PI   + L  L+V++N  Q     E  + L  L   +LS N       +    
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 142 MQML----ARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMT 196
           +  +      LD+S N +    P   A     L  L L NN    ++       L  L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 197 LQLDGNNFSGEI---PESLSKCRRLGGLYLSDNHLS------GEIPRWLGNLSFLVDIIM 247
            +L    F  E        S    L  L + +  L+       +I      L+ +    +
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI 307
            +  +E +    +      + L+L N   FG  P+    +      L+    +G      
Sbjct: 290 VSVTIERVKDFSY--NFGWQHLELVNCK-FGQFPTLKLKSLK---RLTFTSNKGGNAFSE 343

Query: 308 PDSPNLVTLDLSYNCLH--GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID 365
            D P+L  LDLS N L   G           L YL L+ N +   +      L++++ +D
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 366 LSHNNLSGHIPP 377
             H+NL      
Sbjct: 403 FQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (380), Expect = 4e-39
 Identities = 78/453 (17%), Positives = 142/453 (31%), Gaps = 57/453 (12%)

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
             NF++  IP  +          +LS N        SF     L  LD+S  ++      
Sbjct: 16  ELNFYK--IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGL 221
                   L  L L+ N +Q         L++L  L     N +      +   + L  L
Sbjct: 71  AYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 222 YLSDNHL-SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRI----LDLSNNTI 276
            ++ N + S ++P +  NL+ L  + + +N ++ +   +   L  + +    LDLS N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 277 FGTLPSCFSPAYIEQVHLSKNKIEGRL-ESVIPDSPNLVTLDLSYNCLHGSI---PNRID 332
               P  F    + ++ L  N     + ++ I     L    L                 
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
            L  L  L +    +                +D   +++          +S S       
Sbjct: 250 ALEGLCNLTIEEFRL--------------AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
                S      +   + +        F +   +                     + FT+
Sbjct: 296 RVKDFS----YNFGWQHLELVNCKFGQFPTLKLKSLKR-----------------LTFTS 334

Query: 453 KNMSYYYQGRILTSMFGIDLSCNKLT--GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS 510
                 +    L S+  +DLS N L+  G         T +  L+LS N +  T+ + F 
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 511 NLKQIESLDLSYNLLHGKIP----SQLTVLTTL 539
            L+Q+E LD  ++ L           L  L  L
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (358), Expect = 3e-36
 Identities = 63/380 (16%), Positives = 116/380 (30%), Gaps = 52/380 (13%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           +  +L+LS        ++   +   L+ L L+   +         S   L+TL ++ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
           Q          L  L +                  ++ L  L++++N +         + 
Sbjct: 89  QSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNL----MTLQLDGNNFSGEIPESLSKCRRLGGLY 222
             +LE L LS+N +Q    +    L  +    ++L L  N  +   P +  +  RL  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 223 LSDNHLSGEIPRWL----------------------------GNLSFLVDIIMPNNNLEG 254
           L +N  S  + +                                L  L ++ +    L  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 255 L------IPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
           L      I   F  L  +    L + TI       ++    + + L   K         P
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQ-----FP 320

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI--EGEIPVQLCQLKEVQLIDL 366
                    L++    G        LP L +L L+ N +  +G           ++ +DL
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 367 SHNNLSGHIPPCLVNTSLSE 386
           S N +       L    L  
Sbjct: 381 SFNGVITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 3e-35
 Identities = 66/369 (17%), Positives = 109/369 (29%), Gaps = 42/369 (11%)

Query: 50  ANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH 109
                LN   + P+ L     + + L L+ N L         S  +L  LD+S    Q  
Sbjct: 12  YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169
                 + L  L    L+ N        +F+ +  L +L      L       +     +
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 170 LEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLG----GLYLS 224
           L+ L +++N +Q     + FS LTNL  L L  N         L    ++      L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ-LRFLRILDLSNNTIFGTLPSC 283
            N ++   P     +  L  + + NN     +     Q L  L +  L            
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 284 FSPA---------YIEQVHLSKNKI-EGRLESVIPDSPNLVTLDLSYNCLHGSIP----- 328
                         IE+  L+        +  +     N+ +  L    +          
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 329 ------------NRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS--GH 374
                        +   L   S   L     +G        L  ++ +DLS N LS  G 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 375 IPPCLVNTS 383
                  T+
Sbjct: 365 CSQSDFGTT 373

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (311), Expect = 5e-30
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 7/288 (2%)

Query: 13  HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSH--LNLSGEFPNWLVENNT 70
            +         +   L+   + G           L+  +LS   L+  G          T
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTT 373

Query: 71  NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA 130
           +L+ L L+ N +           ++L  LD  ++  +      +   L  L+  ++S   
Sbjct: 374 SLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 131 FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS 190
              +    F  +  L  L ++ N         + T   +L  L LS   L+    +   S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNL-SFLVDIIMPN 249
           L++L  L +  NNF             L  L  S NH+     + L +  S L  + +  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 250 NNLEGLIPIE--FCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS 295
           N+       +     ++  R L +    +    PS      +  ++++
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L ++  +DLS  +L    PT    L+ +  LN+SHNN        +  L  ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 524 LLHGKIPSQLTVLTT 538
            +      +L    +
Sbjct: 529 HIMTSKKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L+S+  + ++ N         I   L  +  L+LS   L    PT F++L  ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 523 NLLHGKIPSQLTVLTTLAV 541
           N            L +L V
Sbjct: 504 NNFFSLDTFPYKCLNSLQV 522

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  +D   + L       +   L  +  L++SH +        F+ L  +E L ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N           ++L  LT L
Sbjct: 455 NSFQENFLPDIFTELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
                    +IP  +        L+LS N L      +F +  +++ LDLS   +     
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 531 SQLTVLTTL 539
                L+ L
Sbjct: 70  GAYQSLSHL 78

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 471 DLSCNKLTGEIPTQIGYL-TKIHALNLSHNNLTGTIPTT--FSNLKQIESLDLSYNLLHG 527
           D S N +      ++ +  + +  LNL+ N+   T         +K    L +    +  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 528 KIPSQL 533
             PS  
Sbjct: 584 ATPSDK 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  163 bits (415), Expect = 6e-44
 Identities = 74/362 (20%), Positives = 131/362 (36%), Gaps = 13/362 (3%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQH--DLKNANLSHLNLSGEFPNWLVEN-NTNLETLLLA 78
              S++  G  +     K L +     L       ++     P         ++E++ L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 79  NNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS 138
            +  F       H    L  LD++       +P  +   L  L +  LS N F      S
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQIS 320

Query: 139 FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKK--FSLTNLMT 196
            ++   L  L I  N    E+         +L  L LS++ ++          +L++L +
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR-WLGNLSFLVDIIMPNNNLEGL 255
           L L  N       E+  +C +L  L L+   L  +  +    NL  L  + + ++ L+  
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 256 IPIEFCQLRFLRILDLSNNTIFGTLPSCFSP----AYIEQVHLSKNKIEGRLESVIPDSP 311
               F  L  L+ L+L  N          +       +E + LS   +    +       
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
            +  +DLS+N L  S    +  L  + YL LA+N+I   +P  L  L + + I+L  N L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 372 SG 373
             
Sbjct: 560 DC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  153 bits (389), Expect = 2e-40
 Identities = 57/342 (16%), Positives = 106/342 (30%), Gaps = 13/342 (3%)

Query: 42  YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101
             +   K  N  +L L+ E P  L     + E L  + N L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
           +       I  +       L    L+ N       ++ +  + L  L      ++  I  
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDF 122

Query: 162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGL 221
                  +LE L L +N +      K F    L  L    N       E +S  ++   L
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 222 YLSDNHLS-GEIPRWLGNLSFLVDIIMPNNNLEGLIP--IEFCQLRFLRILDLSNNTIFG 278
            L+ N      I     + +    +         +I   ++   ++ L +    +     
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 279 TLPSCFSPAY---IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLP 335
             P+ F       +E ++L K+       +       L  LDL+   L   +P+ +  L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 336 QLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
            L  L+L+ N  E    +       +  + +  N     +  
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (387), Expect = 4e-40
 Identities = 73/346 (21%), Positives = 128/346 (36%), Gaps = 17/346 (4%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSF--RMPIHSHQKLATLDVSNNFFQG 108
           NL+  +++G  P     ++   ++L              +   + Q L      +   + 
Sbjct: 185 NLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 109 HIPVEI-GTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167
             P    G     +   NL ++ F     ++F     L  LD++   L+ E+P  +  G 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGL 300

Query: 168 FSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEI-PESLSKCRRLGGLYLSD 225
            +L+ L LS N  +  +     S   +L  L + GN    E+    L     L  L LS 
Sbjct: 301 STLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 226 NHL--SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-S 282
           + +  S      L NLS L  + +  N    L    F +   L +LDL+   +      S
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 283 CFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI---PNRIDRLPQLS 338
            F     ++ ++LS + ++   E +    P L  L+L  N          N +  L +L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 339 YLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384
            L+L+   +          LK +  +DLSHN L+      L +   
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  140 bits (354), Expect = 9e-36
 Identities = 68/332 (20%), Positives = 118/332 (35%), Gaps = 16/332 (4%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  L+L+     E P+ L    + L+ L+L+ N      ++   +   L  L +  N  
Sbjct: 279 GLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGS--IPSSFADMQMLARLDISYNQLTGEIPERMA 164
           +  +       L  L E +LS +    S        ++  L  L++SYN+    +     
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAF 396

Query: 165 TGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223
             C  LE+L L+   L+       F  L  L  L L  +       +       L  L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 224 SDNHLSGEI---PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280
             NH           L  L  L  +++   +L  +    F  L+ +  +DLS+N +  + 
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 281 PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYL 340
               S      ++L+ N I   L S++P      T++L  N L  +  N       L + 
Sbjct: 517 IEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWY 572

Query: 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
                 +E            ++ + LS   LS
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 7e-30
 Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 14/267 (5%)

Query: 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182
            +N      N  IP +         L+ S+N L   I     +   +L  L L+   +  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY- 70

Query: 183 HIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
            I    F S   L TL L  N        +LS  + L  L+     +S      L N   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 242 LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAY---IEQVHLSKNK 298
           L  + + +N++  +   +      L++LD  NN I        S         ++L+ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 299 IEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID--RLPQLSYLLLANNYIEGEIPVQLC 356
           I G +E    DS    +L+         I   +    +  L      +   E   P    
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 357 QLKEVQL--IDLSHNNLSGHIPPCLVN 381
            L E+ +  I+L  +            
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHC 276

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 15/70 (21%), Positives = 29/70 (41%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           ++ S N L     T    L  +  L+L+   +      TF +  ++++L L+ N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 530 PSQLTVLTTL 539
            + L+    L
Sbjct: 98  ETALSGPKAL 107

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 13/69 (18%), Positives = 22/69 (31%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           DL+  ++            ++  L L+ N L     T  S  K ++ L      +     
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 531 SQLTVLTTL 539
             L    TL
Sbjct: 123 IPLHNQKTL 131

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 8/76 (10%), Positives = 26/76 (34%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             ++  +      ++      +     + +L L  N+++          ++++ LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 524 LLHGKIPSQLTVLTTL 539
            +H      ++ L   
Sbjct: 164 AIHYLSKEDMSSLQQA 179

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  + LS   L+         L  ++ ++LSHN LT +     S+LK I  L+L+ N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN 533

Query: 524 LLHGKIPSQLTVLTTLAVF 542
            +   +PS L +L+     
Sbjct: 534 HISIILPSLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 22/70 (31%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L+ N L     T +     +  L      ++        N K +ESL L  N +    
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 530 PSQLTVLTTL 539
             +      L
Sbjct: 146 LPKGFPTEKL 155

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 464 LTSMFGIDLSCNKLT--GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           L ++  +DLS + +        Q+  L+ + +LNLS+N         F    Q+E LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 522 YNLLHGKIP----SQLTVLTTL 539
           +  L  K        L +L  L
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVL 430

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            + +  +DL+   L+ E+P+ +  L+ +  L LS N        + SN   +  L +  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 524 LLHGKIPSQ----LTVLTTL 539
               ++ +     L  L  L
Sbjct: 336 TKRLELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 471 DLSCNKLTGEIPTQIG---YLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 527
           +L  N        +      L ++  L LS  +L+      F++LK +  +DLS+N L  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 528 KIPSQLTVLTTL 539
                L+ L  +
Sbjct: 515 SSIEALSHLKGI 526

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 464 LTSMFGIDLSCNKLTG-EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
              +  +DL+  +L   +  +    L  +  LNLSH+ L  +    F  L  ++ L+L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 523 NLLHGKIPSQLTVLTTL 539
           N        +   L TL
Sbjct: 459 NHFPKGNIQKTNSLQTL 475

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI---PTTFSNLKQIESLDL 520
           L  +  ++LS + L          L  +  LNL  N+          +   L ++E L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 521 SYNLLHGKIPSQLTVLTTL 539
           S+  L        T L  +
Sbjct: 484 SFCDLSSIDQHAFTSLKMM 502

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  M  +DLS N+LT      + +L  I+ LNL+ N+++  +P+    L Q  +++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 524 LLHG 527
            L  
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
            +     L  EIP  +        L  S N L     TTFS L  +  LDL+   ++   
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 530 P---SQLTVLTTL 539
                    L TL
Sbjct: 74  EDTFQSQHRLDTL 86

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKI 529
            LS NK              +  L++  N     + T    NL+ +  LDLS++ +    
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 530 PSQLT 534
              L 
Sbjct: 367 CCNLQ 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHG 527
           + L  N ++     +     K+  L+  +N +        S+L+     SL+L+ N +  
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-A 192

Query: 528 KIPSQLTVLTTL 539
            I          
Sbjct: 193 GIEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTK--IHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           + S++             P     L +  + ++NL  +        TF     ++ LDL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 522 YNLLHGKIPSQLTVLTTL 539
              L  ++PS L  L+TL
Sbjct: 287 ATHLS-ELPSGLVGLSTL 303

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 470 IDLSCNKLTGEIPTQIGY--LTKIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLL 525
           ++    +    I   +    +  +        +     P  F  L    +ES++L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 526 HGKIPSQLTVLTTLAVFR 543
                +     + L    
Sbjct: 267 FNISSNTFHCFSGLQELD 284

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (404), Expect = 9e-42
 Identities = 53/338 (15%), Positives = 101/338 (29%), Gaps = 37/338 (10%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
           T L+ +  AN+          +        +        +  +     L  L +  L   
Sbjct: 448 TKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNC 501

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA--------TGCFSLEILALSNNSLQ 181
                +P    D+  L  L+I+ N+       +               ++I  +  N+L+
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 182 GHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG-NL 239
               S     +  L  L    N       E+     +L  L L  N +  EIP       
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT 618

Query: 240 SFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYI------EQV 292
             +  +   +N L+ +        +  +  +D S N I     +               V
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCL-------HGSIPNRIDRLPQLSYLLLANN 345
            LS N+I+     +      + T+ LS N +                    L+ + L  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 346 YIEGEIP--VQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
            +   +    +   L  +  +D+S+N  S   P   +N
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (404), Expect = 9e-42
 Identities = 62/405 (15%), Positives = 127/405 (31%), Gaps = 32/405 (7%)

Query: 1   TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGE 60
            F+ E+    +     L    ++T +SL+G+   G  P  +    +LK  +    + +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 61  FPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH-----IPVEIG 115
              +  E  T   +    +       +M +   Q+L   D+  +    +     I  +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 116 TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
             L    +     N     I  +   +  L  +  + +  T +            E    
Sbjct: 423 ISLKDT-QIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANS 474

Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG----- 230
                  +      +L +L  ++L       ++P+ L     L  L ++ N         
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 231 ----EIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFS 285
                +         +    M  NNLE         ++  L +LD  +N +   L +  +
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGT 593

Query: 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR--IDRLPQLSYLLLA 343
              +  + L  N+IE   E     +  +  L  S+N L   IPN      +  +  +  +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652

Query: 344 NNYIEGEIPVQLCQLKEVQL-----IDLSHNNLSGHIPPCLVNTS 383
            N I  E     C + + +      + LS+N +           S
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  156 bits (395), Expect = 1e-40
 Identities = 67/381 (17%), Positives = 124/381 (32%), Gaps = 38/381 (9%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENN--------TNLE 73
            LT + L    +    P FLY   +L++ N++                          ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 74  TLLLANNSLFG-SFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132
              +  N+L        +    KL  LD  +N  + H+    GT    L +  L  N   
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIE 608

Query: 133 GSIPSSFADMQMLARLDISYNQLTGEIPERMA-TGCFSLEILALSNNSLQGH-----IFS 186
                  A    +  L  S+N+L   IP        + +  +  S N +           
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 187 KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS-------GEIPRWLGNL 239
             +   N  T+ L  N       E  +    +  + LS+N ++               N 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 240 SFLVDIIMPNNNLEGLIP-IEFCQLRFLRILDLSNNTIFGTLPSC-FSPAYIEQVHLSKN 297
             L  I +  N L  L        L +L  +D+S N  F + P+   + + ++   +   
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQ 786

Query: 298 KIEG--RLESVIPDS----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEI 351
           +     R+    P      P+L+ L +  N +   +  ++   PQL  L +A+N      
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISID 843

Query: 352 PVQLCQLKEVQLIDLSHNNLS 372
              +C   E  +  L ++   
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (343), Expect = 6e-34
 Identities = 61/348 (17%), Positives = 106/348 (30%), Gaps = 24/348 (6%)

Query: 53  SHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPV 112
             L++ G+ P   ++NN  +  L LA     G     I    +L  L    +       +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 113 EIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG--EIPERMATGCFSL 170
                L   M                    Q L   D+  + +    E+         SL
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 171 EILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229
           +   + N + +    SK    LT L  +    + F+ +      +               
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQY 480

Query: 230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYI 289
                   NL  L D+ + N      +P     L  L+ L+++ N              +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 290 ----------EQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLS 338
                     +  ++  N +E     + +     L  LD  +N +   +        +L+
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLT 598

Query: 339 YLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLSGHIPPCLVNTSLS 385
            L L  N IE EIP   C    +V+ +  SHN L   IP      S+ 
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVY 644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 9e-24
 Identities = 33/270 (12%), Positives = 77/270 (28%), Gaps = 36/270 (13%)

Query: 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG 182
            FN   + +         +   +  L ++     G +P+ +      L++L+   +S   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETV 361

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGGLYLSDNHLS-----GEIPRWL 236
                          +   +       +  L   +RL    L  + ++       I +  
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 237 GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK 296
                   I    N +   I     +L  L+I+  +N+                      
Sbjct: 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPF-------------------- 460

Query: 297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLC 356
                   +    + +    +  Y   + +       L  L+ + L N     ++P  L 
Sbjct: 461 --------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 357 QLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
            L E+Q ++++ N            T L++
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLAD 542

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 22/231 (9%)

Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374
             +   +         +D   +++ L LA    +G +P  + QL E++++    ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 375 IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY 434
                      +  +E          +           +       + +           
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--------- 413

Query: 435 VGSRTPPMGKEETIQFTTKNMSYYYQGRI------LTSMFGIDLSCNKLTGEIPTQIGYL 488
              +        +++ T           I      LT +  I  + +  T +        
Sbjct: 414 --MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
                 N  +         ++SNLK +  ++L       ++P  L  L  L
Sbjct: 472 -----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH------NNLTGTIPTTFSNLKQIES 517
           L  +  +D+S N  +   PTQ    +++ A  + H      N +    PT  +    +  
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 518 LDLSYNLLHG---KIPSQLTVL 536
           L +  N +     K+  QL +L
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT-------GTIPTTFSNLKQIE 516
             +   + LS N++           + I  + LS+N +T             + N   + 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 517 SLDLSYNLLHGKIP-----SQLTVLTTL 539
           ++DL +N L   +      + L  L+ +
Sbjct: 732 TIDLRFNKLTS-LSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG---------TIPTTFSNLKQ 514
           L  +  ++L       ++P  +  L ++ +LN++ N              +        +
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 515 IESLDLSYNLLHGKIP-----SQLTVLTTL 539
           I+   + YN L    P      ++  L  L
Sbjct: 550 IQIFYMGYNNLEE-FPASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG-- 527
            +    K           L  +  + L +      +P    +L +++SL+++ N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 528 -------KIPSQLTVLTTL 539
                  ++         +
Sbjct: 532 QLKADWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 464 LTSMFGIDLSCNKLT-------GEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQI 515
            + +  I LS N +T                   +  ++L  N LT        + L  +
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 516 ESLDLSYNLLHGKIPSQLTVLTTLAVF 542
            ++D+SYN      P+Q    + L  F
Sbjct: 756 SNMDVSYNCFSS-FPTQPLNSSQLKAF 781

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI--GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
              +  IDL  NKLT  +        L  +  +++S+N  + + PT   N  Q+++  + 
Sbjct: 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784

Query: 522 YNL------LHGKIPSQLTVLTTL 539
           +        +  + P+ +T   +L
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSL 808

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 464 LTSMFGIDLSCNKLTG---------EIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLK 513
           L  +  ++++CN+             +        KI    + +NNL       +   + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 514 QIESLDLSYNLLHGKIPS--QLTVLTTL 539
           ++  LD  +N +   + +      LT L
Sbjct: 574 KLGLLDCVHNKVR-HLEAFGTNVKLTDL 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           +  +  +D   NK+   +    G   K+  L L +N +        +   Q+E L  S+N
Sbjct: 572 MVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 524 LLHGKIP-----SQLTVLTTL 539
            L   IP       + V+ ++
Sbjct: 630 KLKY-IPNIFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPT-----QIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESL 518
           +  M  +D S NK+  E                  + LS+N +       F+    I ++
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 519 DLSYNLL 525
            LS NL+
Sbjct: 703 ILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 8/78 (10%), Positives = 24/78 (30%)

Query: 453 KNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL 512
           +  S      I +  +  +   +    +    +    ++  L+L+     G +P     L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 513 KQIESLDLSYNLLHGKIP 530
            +++ L    +       
Sbjct: 347 TELKVLSFGTHSETVSGR 364

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 461 GRILTSMFGIDLSCNKLTGEIP--TQIGYLTKIHALNLSHNNLTGTIPTTFS-----NLK 513
                 + G+  S NKL   IP       +  + +++ S+N +                 
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 514 QIESLDLSYNLLHGKIPSQLTVLTTL 539
              ++ LSYN +           + +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPI 699

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (371), Expect = 5e-38
 Identities = 61/365 (16%), Positives = 120/365 (32%), Gaps = 23/365 (6%)

Query: 21  FQLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNT-------NL 72
            +L  ++L G +         L +   L    L       E    + E +         +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 73  ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132
           +   L   + F    +  H    ++ + ++    +    +E           ++ R    
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLK 320

Query: 133 GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ--GHIFSKKFS 190
                   D+  L  L ++ N+ +    +       SL  L LS N+L   G        
Sbjct: 321 QF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW-LGNLSFLVDIIMPN 249
             +L  L L  N     +  +      L  L    + L          +L  L+ + +  
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF--SPAYIEQVHLSKNKIEGRLESVI 307
            N +      F  L  L  L ++ N+      S    +   +  + LSK ++E     V 
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
                L  L++S+N L     +  ++L  LS L  + N IE    +     K +   +L+
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 368 HNNLS 372
           +N+++
Sbjct: 554 NNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 5e-36
 Identities = 63/373 (16%), Positives = 122/373 (32%), Gaps = 29/373 (7%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L  + LS      I          +     + ++S   +              L  L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTL 211

Query: 78  ANNSLFGS-FRMPIHSHQKLATLDVSNNFFQGHIPVEI-------GTYLPGLMEFNLSRN 129
             N    +  +  + +   L    +    F+    +EI       G     + EF L+  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
                    F  +  ++ + ++   +   + +      F  + L++    L+        
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLED--VPKHFKWQSLSIIRCQLKQFPT---L 325

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS--GEIPRWLGNLSFLVDIIM 247
            L  L +L L  N  S  I         L  L LS N LS  G         + L  + +
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-SCFSP-AYIEQVHLSKNKIEGRLES 305
             N    ++   F  L  L+ LD  ++T+      S F     +  + +S    +   + 
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 306 VIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLI 364
           +     +L TL ++ N    +  + +      L++L L+   +E         L  +QL+
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 365 DLSHNNLSGHIPP 377
           ++SHNNL   +  
Sbjct: 503 NMSHNNLL-FLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 3e-31
 Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 31/357 (8%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  L+LS        +       +L  L+L  N +             L  L       
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPE---R 162
              +       L  L + N++ N  +   +P+ F+++  L  +D+SYN +          
Sbjct: 117 AS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-------SLSKC 215
           +         L +S N +   I  + F    L  L L GN  S  I +        L   
Sbjct: 176 LRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLV--DIIMPNNNLEGLIPIEFCQLRFLRILDLSN 273
           R + G +  + +L    P  +  L  +   +  +   N      ++F  L  +  + L+ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 274 NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS--PNLVTLDLSYNCLHGSIPNRI 331
            +I   L         + + + + +++       P    P L +L L+ N   GSI  + 
Sbjct: 295 VSIK-YLEDVPKHFKWQSLSIIRCQLKQ-----FPTLDLPFLKSLTLTMN--KGSISFKK 346

Query: 332 DRLPQLSYLLLANNYIE--GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
             LP LSYL L+ N +   G           ++ +DLS N         +    L  
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 3e-31
 Identities = 61/378 (16%), Positives = 117/378 (30%), Gaps = 34/378 (8%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L ++         ++             LK  N++H  +          N TNL  + L
Sbjct: 105 SLENLVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 78  ANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
           + N +        +    + Q   +LD+S N     I  +    +  L E  L  N  + 
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK-LHELTLRGNFNSS 218

Query: 134 SIPS-SFADMQMLARLDISYNQLTGEIP-ERMATGCF------SLEILALSNNSLQGHIF 185
           +I      ++  L    +   +   E   E             +++   L+  +      
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 186 SKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI 245
            K   L N+  + L G +      E + K  +   L +    L       L  L  L   
Sbjct: 279 VKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-- 334

Query: 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPA---YIEQVHLSKNKIEGR 302
            +  N     I  +   L  L  LDLS N +  +    +S      +  + LS N     
Sbjct: 335 -LTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII- 390

Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNR-IDRLPQLSYLLLANNYIEGEIPVQLCQLKEV 361
           + +       L  LD  ++ L           L +L YL ++    + +       L  +
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 362 QLIDLSHNNLSGHIPPCL 379
             + ++ N+   +    +
Sbjct: 451 NTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 6e-28
 Identities = 59/271 (21%), Positives = 89/271 (32%), Gaps = 21/271 (7%)

Query: 12  SHYNSLTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE 67
            +   +   F+  S+S+             P        LK+  L+    S  F      
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF-------LKSLTLTMNKGSISFKKV--- 347

Query: 68  NNTNLETLLLANNSLFGSFRMPIH--SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125
              +L  L L+ N+L  S            L  LD+S N     I       L  L   +
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLD 405

Query: 126 LSRNAFNGSIP-SSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
              +        S+F  ++ L  LDISY        + +  G  SL  L ++ NS + + 
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 185 FSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV 243
            S  F+  TNL  L L                 RL  L +S N+L          L  L 
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 244 DIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
            +    N +E    I     + L   +L+NN
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 2e-26
 Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 19/265 (7%)

Query: 133 GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG---HIFSKKF 189
           GS+      +  +        +L+ ++P+ + +   S + + LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
           + + L  L L          ++      L  L L+ N +    P     L+ L +++   
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFG-TLPSCFSP-AYIEQVHLSKNKI----EGRL 303
             L  L      QL  L+ L++++N I    LP+ FS    +  V LS N I       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQ 362
           + +  +    ++LD+S N +   I ++  +  +L  L L  N+    I     Q L  + 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 363 LIDLSHNNLSGHIPPCLVNTSLSEG 387
           +  L            +   S+ EG
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEG 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            T++  +DLS  +L          L ++  LN+SHNNL     + ++ L  + +LD S+N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 524 LLHGKIPSQLTVLTTLAVF 542
            +            +LA F
Sbjct: 532 RIETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 17/70 (24%), Positives = 27/70 (38%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +DLS  ++          L  +  L L+ N +    P +FS L  +E+L      L    
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 530 PSQLTVLTTL 539
              +  L TL
Sbjct: 121 SFPIGQLITL 130

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           IDLS N L           +++  L+LS   +       +  L  + +L L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 530 PSQLTVLTTL 539
           P   + LT+L
Sbjct: 97  PGSFSGLTSL 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           LTS+  + ++ N       + +    T +  L+LS   L       F  L +++ L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L     S    L +L
Sbjct: 507 NNLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  +++S N L     +    L  +  L+ S N +  +        K +   +L+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 524 LLH 526
            + 
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQ-IGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  +D   + L           L K+  L++S+ N        F  L  + +L ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N           +  T LT L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  + L+ N +    P     LT +  L      L          L  ++ L++++N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 524 LLHG-KIPSQLTVLTTL 539
            +H  K+P+  + LT L
Sbjct: 139 FIHSCKLPAYFSNLTNL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
                 KL+ ++P  I   +    ++LS N L      +FSN  +++ LDLS   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 530 P---SQLTVLTTL 539
                 L  L+ L
Sbjct: 73  DKAWHGLHHLSNL 85

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 464 LTSMFGIDLSCNKLT--GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           L S+  +DLS N L+  G           +  L+LS N     +   F  L++++ LD  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 522 YNLLHGKIP----SQLTVLTTL 539
           ++ L           L  L  L
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYL 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK--QIESLDLS 521
           L  +  + L+ NK +  I  +   L  +  L+LS N L+ +   ++S+L    +  LDLS
Sbjct: 327 LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 522 YNLLHGKIPSQLTVLTTL 539
           +N     + +    L  L
Sbjct: 385 FNGAII-MSANFMGLEEL 401

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 470 IDLSCNKLTG-EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ----IESLDLSYNL 524
           ++++ N +   ++P     LT +  ++LS+N +          L++      SLD+S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 525 LH 526
           + 
Sbjct: 193 ID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
             L+      +   +   L  + A++L+  ++            + +SL +    L    
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQFP 323

Query: 530 PSQLTVLTTL 539
              L  L +L
Sbjct: 324 TLDLPFLKSL 333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHA----LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
           +DLS N +       + +L +       L++S N +       F  +K +  L L  N  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216

Query: 526 HGKIPSQL 533
              I    
Sbjct: 217 SSNIMKTC 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  136 bits (345), Expect = 3e-34
 Identities = 96/526 (18%), Positives = 176/526 (33%), Gaps = 59/526 (11%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSF-RMPIHSHQKLATLDVSNNF 105
               L LS                 L+ L L +     +  +    +   L  LD+ ++ 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSI--PSSFADMQMLARLDISYNQLTGEIPERM 163
               +  +    L  L E  L     + ++     F +++ L RLD+S NQ+        
Sbjct: 85  IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 164 ATGCFSLEILALSNNSLQGHIFSKKF---SLTNLMTLQLDGNNFSGEIPESLSKC----- 215
                SL+ +  S+N +   +   +        L    L  N+    +     KC     
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 216 -RRLGGLYLSDNHLSGEIPR------------WLGNLSFLVDIIMPNNNLEGLIPIEFCQ 262
              L  L +S N  + +I               L     ++      +N++      F  
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 263 LR--FLRILDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319
           L    +R LDLS+  +F      F     ++ ++L+ NKI    +       NL  L+LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
           YN L     +    LP+++Y+ L  N+I          L+++Q +DL  +N    I    
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR-DNALTTIHFIP 381

Query: 380 VNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRT 439
               +    ++ V     +    +      ++  L             +   L    +R 
Sbjct: 382 SIPDIFLSGNKLVTLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNR- 437

Query: 440 PPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQI-----GYLTKIHAL 494
                       + + +         S+  + L  N L     T++       L+ +  L
Sbjct: 438 --------FSSCSGDQTPSE----NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 495 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH----GKIPSQLTVL 536
            L+HN L    P  FS+L  +  L L+ N L       +P+ L +L
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 2e-30
 Identities = 72/402 (17%), Positives = 143/402 (35%), Gaps = 50/402 (12%)

Query: 22  QLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
            L+  SL+   +       +    +  +N  L  L++SG        N   ++     +N
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSN 226

Query: 81  SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEI--GTYLPGLMEFNLSRNAFNGSIPSS 138
           ++  S    +     +       +  +         G     +   +LS           
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 139 FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTL 197
           F  ++ L  L+++YN++  +I +    G  +L++L LS N L   ++S  F  L  +  +
Sbjct: 286 FETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYI 343

Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257
            L  N+ +    ++     +L  L L DN L+      +  +  + DI +  N L  L  
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPK 398

Query: 258 IE---------------------FCQLRFLRILDLSNNTIFGTLPSCF--SPAYIEQVHL 294
           I                        ++  L+IL L+ N                +EQ+ L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 295 SKNKIEGRLESVIPDS-----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG 349
            +N ++   E+ +         +L  L L++N L+   P     L  L  L L +N +  
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT- 517

Query: 350 EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP 391
            +         ++++D+S N L    P   V+ S+ +     
Sbjct: 518 VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 3e-30
 Identities = 62/353 (17%), Positives = 114/353 (32%), Gaps = 30/353 (8%)

Query: 45  HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN 104
            D + A     NL+ + P    +     E LLL+ N +           ++L  L++ + 
Sbjct: 4   FDGRIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE-IPERM 163
           +    I  E    LP L   +L  +      P +F  +  L  L + +  L+   + +  
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 164 ATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLS--KCRRLGG 220
                +L  L LS N ++       F  L +L ++    N         L   + + L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 221 LYLSDNHLSGEIPRWLGNL----------------SFLVDIIMPN--NNLEGLIPIEFCQ 262
             L+ N L   +    G                  +     I  N  N +          
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 263 LRFLRILDLSNNTIFGTLPSCFSP---AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319
              +       + I     + F+    + +  + LS   +      V     +L  L+L+
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           YN ++         L  L  L L+ N +          L +V  IDL  N+++
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (295), Expect = 7e-28
 Identities = 73/390 (18%), Positives = 136/390 (34%), Gaps = 58/390 (14%)

Query: 38  PKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSH 93
             +  +   L   +LS   +   + +       +L+++  ++N +          P+   
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQ-G 173

Query: 94  QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS-----------------RNAFNGSIP 136
           + L+   ++ N     + V+ G  +       L                   NA + S  
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 137 SSFADMQMLARLDISYNQLTGEIPERMATGCF--SLEILALSNN---SLQGHIFSKKFSL 191
            S      +      ++ +  +  +    G    S+  L LS+    SL   +F    +L
Sbjct: 234 FSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TL 289

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
            +L  L L  N  +    E+      L  L LS N L          L  +  I +  N+
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYI-----------------EQVHL 294
           +  +    F  L  L+ LDL +N +  T+    S   I                   +HL
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 295 SKNKIEG-RLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIP 352
           S+N++E   +   +   P+L  L L+ N       ++     P L  L L  N ++    
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 353 VQLC-----QLKEVQLIDLSHNNLSGHIPP 377
            +LC      L  +Q++ L+HN L+  +PP
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLN-SLPP 497

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (279), Expect = 6e-26
 Identities = 77/365 (21%), Positives = 128/365 (35%), Gaps = 32/365 (8%)

Query: 47  LKNANLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS 102
           L  +++ HL+LS        + + E   +L+ L LA N +        +    L  L++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLT------ 156
            N     +       LP +   +L +N        +F  ++ L  LD+  N LT      
Sbjct: 323 YNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381

Query: 157 --------GEIPERMATGCFSLEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGE 207
                   G     +     +  ++ LS N L+   I      + +L  L L+ N FS  
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 208 IPESL-SKCRRLGGLYLSDNHLSGEI-----PRWLGNLSFLVDIIMPNNNLEGLIPIEFC 261
             +   S+   L  L+L +N L               LS L  + + +N L  L P  F 
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSY 320
            L  LR L L++N +   L     PA +E + +S+N++     +  PD   +L  LD+++
Sbjct: 502 HLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQL----LAPNPDVFVSLSVLDITH 556

Query: 321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLV 380
           N                   +           V       V L  LS            +
Sbjct: 557 NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616

Query: 381 NTSLS 385
             SL 
Sbjct: 617 KFSLF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (269), Expect = 1e-24
 Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 29/287 (10%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
           L       LS N       SSF  ++ L  L++        I +       +L IL L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 178 NSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEI--PESLSKCRRLGGLYLSDNHLSG-EIP 233
           + +   +    F  L +L  L+L     S  +         + L  L LS N +    + 
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 234 RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF--LRILDLSNNTI-------FGTLPSCF 284
              G L+ L  I   +N +  +   E   L+   L    L+ N++       +G   + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPD------------SPNLVTLDLSYNCLHGSIPNRID 332
               +E + +S N     +     +            + +++     ++ +     N   
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 333 RLPQLS--YLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
            L + S  +L L++ ++          LK++++++L++N ++  I  
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIAD 307

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (265), Expect = 3e-24
 Identities = 68/376 (18%), Positives = 115/376 (30%), Gaps = 43/376 (11%)

Query: 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
           F   I      +L   +      L     L L  N        S     +L  L L   +
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 228 LSGEI-PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
               I      NL  L  + + ++ +  L P  F  L  L  L L               
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC------------ 107

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG-SIPNRIDRLPQLSYLLLANN 345
                  LS   ++   +    +   L  LDLS N +    +     +L  L  +  ++N
Sbjct: 108 ------GLSDAVLK---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 346 YIEGEIPVQLCQLKEVQL--IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRAS 403
            I      +L  L+   L    L+ N+L   +            +               
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-----------MVLE 207

Query: 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI 463
               S     ++ T  FS++  +   ++L               I+   +N    + G  
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT---FAGLA 264

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            +S+  +DLS   +          L  +  LNL++N +       F  L  ++ L+LSYN
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 524 LLHGKIPSQLTVLTTL 539
           LL     S    L  +
Sbjct: 325 LLGELYSSNFYGLPKV 340

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (326), Expect = 1e-32
 Identities = 62/438 (14%), Positives = 124/438 (28%), Gaps = 66/438 (15%)

Query: 113 EIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI 172
           EI           ++ ++   ++ S       +  LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
           L LS+N L         SL+ L TL L+ N         L     +  L+ ++N++S  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--------FGTLPSCF 284
                      +I + NN +  L  ++      ++ LDL  N I          +  +  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDS---PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
               +E ++L  N I       +        L TLDLS N L   +         ++++ 
Sbjct: 171 ----LEHLNLQYNFI-----YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGR 401
           L NN +   I   L   + ++  DL  N           + +                  
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--------------- 264

Query: 402 ASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG 461
                               +      P    Y              +      +     
Sbjct: 265 ------QTVAKQTVKKLTGQNEEECTVPTLGHYGAY---------CCEDLPAPFADRLIA 309

Query: 462 RILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
                   +    ++    +  +     +   ++         I       +   +L+  
Sbjct: 310 LKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 522 YNLLHGKIPSQLTVLTTL 539
              L  ++ +       L
Sbjct: 369 KKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 7e-26
 Identities = 54/332 (16%), Positives = 94/332 (28%), Gaps = 27/332 (8%)

Query: 51  NLSHLNLSGEFPNWLVE-----NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
            L  LNLS    N L E     + + L TL L NN +       +     + TL  +NN 
Sbjct: 59  KLELLNLSS---NVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN 110

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
               +         G     L+ N               +  LD+  N++       +A 
Sbjct: 111 IS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
              +LE L L  N +       +     L TL L  N  +  +         +  + L +
Sbjct: 167 SSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-FGTLPSCF 284
           N L   I + L     L    +  N        +F   +  R+  ++  T+   T  +  
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR----LPQLSYL 340
                   H      E            L   + +     GS   R++       +   +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

Query: 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
                     I     + +    ++     L 
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.0 bits (244), Expect = 6e-22
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 44/353 (12%)

Query: 51  NLSHLNLSGEFPNWLVE--NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
            L  L+L+    N++ E     ++ETL  ANN++    R+     Q    + ++NN    
Sbjct: 81  TLRTLDLNN---NYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT- 133

Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167
            +          +   +L  N  +  +     A    L  L++ YN +  ++        
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVF 190

Query: 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
             L+ L LS+N L   +  +  S   +  + L  N     I ++L   + L    L  N 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 228 LS-GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ------------------------ 262
              G +  +      +  +             E C                         
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 263 ---LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS 319
               +   +L    +          + A   ++   K +    ++ V       +TL+  
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
              L   + N      +L   L      + E+     +   +QL+        
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 19/170 (11%)

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
           I E      R     ++D+ L   +     +   + ++ +  N L  +   +      L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 268 ILDLSNNTI-----FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
           +L+LS+N +       +L +      +  + L+ N +       +   P++ TL  + N 
Sbjct: 62  LLNLSSNVLYETLDLESLST------LRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 323 LHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           +   +            + LANN I     +       VQ +DL  N + 
Sbjct: 111 IS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
           +  +  +        ++ + L  ++ +       +  L L+ N +       L    +++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 363 LIDLSHNNLSGHIPP 377
           L++LS N L      
Sbjct: 62  LLNLSSNVLY-ETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 481 IPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
           I        +     ++ ++L   + +   +   ++ LDLS N L     + L   T L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 5e-32
 Identities = 84/411 (20%), Positives = 142/411 (34%), Gaps = 30/411 (7%)

Query: 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNN 203
              LD+S+N L   +          L++L LS   +Q  I    +  L++L TL L GN 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQ 262
                  + S    L  L   + +L+      +G+L  L ++ + +N ++   +P  F  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 263 LRFLRILDLSNNTIFGTLPSCFS-----PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLD 317
           L  L  LDLS+N I     +        P     + LS N +   ++        L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 318 LSYNCLHGSIP-NRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           L  N    ++    I  L  L    L       E            L     + L G   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----------GNLEKFDKSALEGLCN 256

Query: 377 PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALD--Y 434
             +    L+                 +  + S     +     FS + G  +   ++  +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 435 VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLT--GEIPTQIGYLTKIH 492
               T  +   + + FT+      +    L S+  +DLS N L+  G         T + 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 493 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP----SQLTVLTTL 539
            L+LS N +  T+ + F  L+Q+E LD  ++ L           L  L  L
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (275), Expect = 1e-25
 Identities = 66/363 (18%), Positives = 108/363 (29%), Gaps = 40/363 (11%)

Query: 20  KFQLTSISLSGYIDGGTFPKFLY------HQHDLKNANLSHLNLSGEFPNWLVENNTNLE 73
           + +L  ++L    D     K           H L      +     +F    +E   NL 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 74  TLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
                   L       I     L  +   +        V+  +Y  G     L    F  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ--GHIFSKKFSL 191
                    + L RL  + N+      E       SLE L LS N L   G      F  
Sbjct: 319 FPTLKL---KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW--LGNLSFLVDIIMPN 249
           T+L  L L  N     +  +     +L  L    ++L  ++  +    +L  L+ + + +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 430

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
            +        F  L  L +L ++ N+                              +  +
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----------------------DIFTE 468

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
             NL  LDLS   L    P   + L  L  L +A+N ++        +L  +Q I L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 370 NLS 372
              
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (273), Expect = 2e-25
 Identities = 69/350 (19%), Positives = 118/350 (33%), Gaps = 35/350 (10%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLE----TLLLANNSLFGSFRMPIHSHQKLATLDVS 102
           NL HL+LS           +     +     +L L+ N +    +       +L  L + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLR 208

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARL--------DISYNQ 154
           NNF   ++       L GL    L    F         D   L  L         ++Y  
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 155 LTGEIPERMATGCFSLEILALSNNSLQG-HIFSKKFSLTNLMTLQLDGNNFSGEIPESLS 213
              +    +     ++   +L + +++    FS  F   +L  +      F     +SL 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 214 KCRRLGGLYLSDNHLSGEIP-RWLGNLSFLVDIIMPNNNLE--GLIPIEFCQLRFLRILD 270
           +      L  + N          L +L FL    +  N L   G           L+ LD
Sbjct: 329 R------LTFTSNKGGNAFSEVDLPSLEFL---DLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 271 LSNNTIFGTLPSCFSPA-YIEQVHLSKNKIEGRLE-SVIPDSPNLVTLDLSYNCLHGSIP 328
           LS N +  T+ S F     +E +    + ++   E SV     NL+ LD+S+     +  
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 329 NRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIPP 377
              + L  L  L +A N  +         +L+ +  +DLS   L   + P
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (260), Expect = 9e-24
 Identities = 65/378 (17%), Positives = 115/378 (30%), Gaps = 37/378 (9%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L  +         ++         H   LK  N++H  +          N TNLE L L
Sbjct: 101 SLQKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 78  ANNSLF----GSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
           ++N +        R+         +LD+S N     I       +  L +  L  N  + 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LHKLTLRNNFDSL 214

Query: 134 SIPS-SFADMQMLARLDISYNQLTG-----EIPERMATGCFSLEILALSNNSLQG---HI 184
           ++       +  L    +   +        +  +    G  +L I       L      I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVD 244
                 LTN+ +  L        +    S       L L +          L +L  L  
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT- 331

Query: 245 IIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-FGTLPSC--FSPAYIEQVHLSKNKIEG 301
               +N            L  L  LDLS N + F    S   F    ++ + LS N +  
Sbjct: 332 --FTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRI--DRLPQLSYLLLANNYIEGEIPVQLCQLK 359
            + S       L  LD  ++ L   +        L  L YL +++ +           L 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 360 EVQLIDLSHNNLSGHIPP 377
            ++++ ++ N+   +  P
Sbjct: 446 SLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 9e-23
 Identities = 63/368 (17%), Positives = 119/368 (32%), Gaps = 54/368 (14%)

Query: 50  ANLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDV 101
            +  +L+LS        ++   +   L+ L L+   +     G++     S   L+TL +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLIL 83

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
           + N  Q  + +   + L  L +                  ++ L  L++++N +      
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 162 RMATGCFSLEILALSNNSLQG---HIFSKKFSLTNL-MTLQLDGNNFSGEIPESLSKCRR 217
              +   +LE L LS+N +Q            +  L ++L L  N  +  I     K  R
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 218 LGGLYLSDNHLSGEIPR-------WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
           L  L L +N  S  + +        L     ++       NLE         L  L I +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 271 L---SNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDS---------------- 310
                 +     +   F+    +    L    IE R++    +                 
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 311 ----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE--GEIPVQLCQLKEVQLI 364
                +L  L  + N    +       LP L +L L+ N +   G           ++ +
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 365 DLSHNNLS 372
           DLS N + 
Sbjct: 379 DLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 57/313 (18%), Positives = 101/313 (32%), Gaps = 42/313 (13%)

Query: 21  FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
           F+L  +          F        ++ + +L  + +           N   + L L N 
Sbjct: 262 FRLAYLDYYLDDIIDLFNCL----TNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC 314

Query: 81  SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN--GSIPSS 138
                 + P    + L  L  ++N             LP L   +LSRN  +  G    S
Sbjct: 315 KFG---QFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 139 FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTL 197
                 L  LD+S+N +   +      G   LE L   +++L+       F SL NL+ L
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLI 256
            +   +         +    L  L ++ N             L  L  + +    LE L 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 257 PIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL 316
           P  F  L  L++L++++N +  ++P                      + +     +L  +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLK-SVP----------------------DGIFDRLTSLQKI 523

Query: 317 DLSYNCLHGSIPN 329
            L  N    S P 
Sbjct: 524 WLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 32/96 (33%)

Query: 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345
           P   + + LS N +           P L  LDLS   +          L  LS L+L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
            I+         L  +Q +     NL+      + +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L+S+  + ++ N         I   L  +  L+LS   L    PT F++L  ++ L+++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L          LT+L
Sbjct: 504 NQLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L ++  +DLS  +L    PT    L+ +  LN++ N L       F  L  ++ + L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 524 LLH 526
              
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  +D   + L       +   L  +  L++SH +        F+ L  +E L ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N           ++L  LT L
Sbjct: 455 NSFQENFLPDIFTELRNLTFL 475

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
                    +IP  +        L+LS N L      +F +  +++ LDLS   +   I 
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE 68

Query: 531 ----SQLTVLTTL 539
                 L+ L+TL
Sbjct: 69  DGAYQSLSHLSTL 81

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (311), Expect = 2e-31
 Identities = 52/346 (15%), Positives = 105/346 (30%), Gaps = 45/346 (13%)

Query: 23  LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL 82
             ++   G      +   L       NA+ +  + +    N       N +       +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRAL 68

Query: 83  FGSFRMP-IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
             +  +    +      L++ +       P +    L  L    +        +P +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 142 MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL---------QGHIFSKKFSLT 192
              L  L ++ N L   +P  +A+    L  L++                    +   L 
Sbjct: 126 FAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           NL +L+L+       +P S++  + L  L + ++ LS  +   + +L  L ++ +     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPN 312
               P  F     L+ L L + +   TLP                    RL         
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----------------HRLT-------Q 278

Query: 313 LVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358
           L  LDL        +P+ I +LP    +L+  +        +    
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (309), Expect = 3e-31
 Identities = 68/353 (19%), Positives = 110/353 (31%), Gaps = 53/353 (15%)

Query: 43  HQHDLKNANLSHLNLSG-----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLA 97
           H H   ++   +L   G      + + L    +  +    A+ + + S     +S+    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN-NPQ 59

Query: 98  TLDVSNNFFQGHIPVEIGT-YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLT 156
               +    +      +     PG +   L         P     +  L  + I    L 
Sbjct: 60  IETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 157 GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCR 216
            E+P+ M      LE L L+ N L+  + +   SL  L  L +       E+PE L+   
Sbjct: 118 -ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 217 RLGG---------LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
             G          L L    +   +P  + NL  L  + + N+ L  L       L  L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLE 232

Query: 268 ILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS-YNCLHGS 326
            LDL   T     P  F                G           L  L L   + L  +
Sbjct: 233 ELDLRGCTALRNYPPIF----------------GGR-------APLKRLILKDCSNLL-T 268

Query: 327 IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
           +P  I RL QL  L L        +P  + QL    +I +   +L   +    
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (270), Expect = 6e-26
 Identities = 42/286 (14%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 117 YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS 176
           +  G        +          +  Q     D +                 + +I   +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRT 64

Query: 177 NNSLQGHIFS-KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
             +L+      +  +    + L+L       + P+   +   L  + +    L  E+P  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 236 LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYI------ 289
           +   + L  + +  N L  L P     L  LR L +        LP   +          
Sbjct: 123 MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 290 ----EQVHLSKNKIEGRLESVIPDS----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
               + + L    I       +P S     NL +L +  + L  ++   I  LP+L  L 
Sbjct: 182 LVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN-TSLSE 386
           L         P        ++ + L   +    +P  +   T L +
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 31/201 (15%)

Query: 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
            +    L   G+       + LS+ +R      +  H +        N +          
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66

Query: 251 NLEGLIP-IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
            L+     +E         L+L +  +    P                    RL      
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLS----- 104

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
             +L  + +    L   +P+ + +   L  L LA N +   +P  +  L  ++ + +   
Sbjct: 105 --HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 370 NLSGHIPPCLVNTSLSEGHDE 390
                +P  L +T  S  H  
Sbjct: 161 PELTELPEPLASTDASGEHQG 181

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           +L    L  + P Q   L+ +  + +    L   +P T      +E+L L+ N L   +P
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 531 S---QLTVLTTL 539
           +    L  L  L
Sbjct: 144 ASIASLNRLREL 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+ +  + +    L  E+P  +     +  L L+ N L   +P + ++L ++  L +   
Sbjct: 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 524 LLHGKIPSQLTVLTTLAVF 542
               ++P  L         
Sbjct: 161 PELTELPEPLASTDASGEH 179

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 464 LTSMFGIDLS-CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  +DL  C  L    P   G    +  L L   +   T+P     L Q+E LDL  
Sbjct: 228 LPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 523 NLLHGKIP---SQLTVLTTLAV 541
            +   ++P   +QL     + V
Sbjct: 287 CVNLSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 454 NMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK 513
           +     + + L ++  + L    +   +P  I  L  + +L + ++ L+  +     +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 514 QIESLDLSYNLLHGKIPSQLTVLTTL 539
           ++E LDL         P        L
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPL 255

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS-Y 522
           L ++  + +  + L+  +   I +L K+  L+L         P  F     ++ L L   
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 523 NLLHGKIPS---QLTVLTTL 539
           + L   +P    +LT L  L
Sbjct: 264 SNLL-TLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 464 LTSMFGIDLS-CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
              +  + L  C+ L   +P  I  LT++  L+L        +P+  + L     + +  
Sbjct: 252 RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 523 NLLHGKIPSQLTVLT 537
           +L       +     
Sbjct: 311 HLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN---------LKQIESLDLS 521
            L+ N L   +P  I  L ++  L++        +P   ++         L  ++SL L 
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 522 YNLLHGKIPS---QLTVLTTL 539
           +  +   +P+    L  L +L
Sbjct: 192 WTGIR-SLPASIANLQNLKSL 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIH--ALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
             +      +   L       +   T+    AL L    L    P     L  ++ + + 
Sbjct: 55  SNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112

Query: 522 YNLLHGKIPSQLTVLTTL 539
              L  ++P  +     L
Sbjct: 113 AAGLM-ELPDTMQQFAGL 129

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 2e-31
 Identities = 68/310 (21%), Positives = 116/310 (37%), Gaps = 23/310 (7%)

Query: 49  NANLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLD 100
                 L+L              +  +LE L L  N +     G+F    ++   L TL 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLG 86

Query: 101 VSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP 160
           + +N  +  IP+ + T L  L + ++S N     +   F D+  L  L++  N L   I 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS 144

Query: 161 ERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRR 217
            R  +G  SLE L L      S+     S    L  L+ L+L   N +     S  +  R
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
           L  L +S       +         L  + + + NL  +  +    L +LR L+LS N I 
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 278 GTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLP 335
               S       ++++ L   ++             L  L++S N L  ++   +   + 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320

Query: 336 QLSYLLLANN 345
            L  L+L +N
Sbjct: 321 NLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 9e-28
 Identities = 61/292 (20%), Positives = 105/292 (35%), Gaps = 33/292 (11%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVS 102
           +L  L L+             N  NL TL L +N L     G F         L  LD+S
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL----SNLTKLDIS 112

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQLTGEIPE 161
            N     +   +   L  L    +  N     I   +F+ +  L +L +    LT  IP 
Sbjct: 113 ENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPT 169

Query: 162 RMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGG 220
              +    L +L L + ++   I    F  L  L  L++    +   +  +      L  
Sbjct: 170 EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 221 LYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--- 276
           L ++  +L+  +P   + +L +L  + +  N +  +      +L  L+ + L    +   
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287

Query: 277 ----FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
               F  L        +  +++S N++    ESV     NL TL L  N L 
Sbjct: 288 EPYAFRGLNY------LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 8e-26
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 33/263 (12%)

Query: 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178
                 +L +N         FA    L  L+++ N ++  +        F+L  L L +N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 179 ---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
               +   +F+    L+NL  L +  N     +         L  L + DN L     R 
Sbjct: 91  RLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 236 LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS 295
              L+ L  + +   NL  +       L  L +L L +  I       F           
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--------- 198

Query: 296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQL 355
                            L  L++S+     ++         L+ L + +  +   +P   
Sbjct: 199 --------------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

Query: 356 CQ-LKEVQLIDLSHNNLSGHIPP 377
            + L  ++ ++LS+N +S  I  
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 17/191 (8%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L  ++L       I          H H L    L HLN++    ++  +    L+ L +
Sbjct: 153 SLEQLTLEKCNLTSIPTEAL----SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 78  ANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS 137
           ++     +          L +L +++      +P     +L  L   NLS N  +    S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 138 SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNL 194
              ++  L  + +   QL   +      G   L +L +S N   +L+  +F    S+ NL
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVGNL 322

Query: 195 MTLQLDGNNFS 205
            TL LD N  +
Sbjct: 323 ETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL---H 526
           +DL  N++      +      +  L L+ N ++   P  F+NL  + +L L  N L    
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96

Query: 527 GKIPSQLTVLTTL 539
             + + L+ LT L
Sbjct: 97  LGVFTGLSNLTKL 109

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  +++S       +     Y   + +L+++H NLT        +L  +  L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 524 LLHGKIP----SQLTVLTTL 539
            +   I      +L  L  +
Sbjct: 259 PIS-TIEGSMLHELLRLQEI 277

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L S+  + L    LT  IPT+   +L  +  L L H N+      +F  L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 523 NLLHGKIPSQLTVLTTL 539
                 +         L
Sbjct: 210 WPYLDTMTPNCLYGLNL 226

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L ++  + L  N+L   IP  +   L+ +  L++S N +   +   F +L  ++SL++  
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N L   I     S L  L  L
Sbjct: 138 NDLV-YISHRAFSGLNSLEQL 157

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +     +    +P  I   T+   L+L  N +       F++   +E L+L+ N++   +
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AV 71

Query: 530 PSQ----LTVLTTL 539
                  L  L TL
Sbjct: 72  EPGAFNNLFNLRTL 85

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L+++  +D+S NK+   +   +   L  + +L +  N+L       FS L  +E L L  
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 523 NLLHGKIPSQ----LTVLTTL 539
             L   IP++    L  L  L
Sbjct: 162 CNLT-SIPTEALSHLHGLIVL 181

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 470 IDLSCNKLTGEIPTQ-IGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526
           + ++   LT  +P   + +L  +  LNLS+N ++    +    L +++ + L    L 
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  I L   +L   +       L  +  LN+S N LT    + F ++  +E+L L  
Sbjct: 271 LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 523 NLLH 526
           N L 
Sbjct: 330 NPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 2e-31
 Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 35/335 (10%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
              A L   +++        E   ++  L++A   +  +    I     L  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
               P+     L  L    +  N    +  S+  ++  L  L ++ + ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
              +  L L  N     + S   ++T L  L +  +      P  ++    L  L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-----FGTLP 281
            +    P  L +L+ L       N +  + P+    +  L  L + NN I        L 
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 282 SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
                  +  + +  N+I     + + D   L  L++  N +   I   ++ L QL+ L 
Sbjct: 244 Q------LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLF 293

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           L NN +  E    +  L  +  + LS N+++   P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (302), Expect = 4e-30
 Identities = 68/332 (20%), Positives = 130/332 (39%), Gaps = 40/332 (12%)

Query: 51  NLSHLNLSGEFPNWL-----VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
           +++ L ++G     +     +E  TNLE L L  N +      P+ +  KL  L +  N 
Sbjct: 45  SITKLVVAG---EKVASIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNK 99

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
                 ++    L  L E  L+ +  +   P   A++  +  L++  N    ++     +
Sbjct: 100 ITDISALQ---NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LS 152

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
               L  L ++ + ++         LT+L +L L+ N      P  L+    L       
Sbjct: 153 NMTGLNYLTVTESKVKDVTPIAN--LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-----FGTL 280
           N ++   P  + N++ L  + + NN +  L P+    L  L  L++  N I        L
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISDINAVKDL 264

Query: 281 PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYL 340
                   ++ +++  N+I     SV+ +   L +L L+ N L       I  L  L+ L
Sbjct: 265 TK------LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
            L+ N+I    P  L  L ++   D ++  + 
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 5e-23
 Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 19/257 (7%)

Query: 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS 179
           G           N   P   AD+    R  +    +T  + +       S+  L ++   
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELE---SITKLVVAGEK 55

Query: 180 LQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNL 239
           +          LTNL  L L+GN  +   P  LS   +L  LY+  N ++      L NL
Sbjct: 56  VAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNL 109

Query: 240 SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKI 299
           + L ++ +  +N+  + P+    L  +  L+L  N     L    +   +  + ++++K+
Sbjct: 110 TNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 300 EGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK 359
           +    + I +  +L +L L+YN +    P  +  L  L Y     N I    P  +  + 
Sbjct: 168 KD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 360 EVQLIDLSHNNLSGHIP 376
            +  + + +N ++   P
Sbjct: 222 RLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 17/218 (7%)

Query: 36  TFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK 95
           +    L +   L    ++   +    P   + N T+L +L L  N +      P+ S   
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQI--EDISPLASLTS 200

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
           L       N      PV     +  L    +  N      P   A++  L  L+I  NQ+
Sbjct: 201 LHYFTAYVNQITDITPVA---NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

Query: 156 TGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC 215
           +  I          L++L + +N +     S   +L+ L +L L+ N    E  E +   
Sbjct: 256 SD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
             L  L+LS NH++   P  L +LS +      N  ++
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT +  +++  N+++    + +  L+++++L L++N L          L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + L+ + + 
Sbjct: 322 HITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+ +  + L+ N+L  E    IG LT +  L LS N++T   P   ++L +++S D +  
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 524 LL 525
           ++
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  + +  NK+T    + +  LT +  L L+ +N++   P   +NL ++ SL+L  N
Sbjct: 87  LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142

Query: 524 LLHGKIP--SQLTVLTTL 539
                +   S +T L  L
Sbjct: 143 HNLSDLSPLSNMTGLNYL 160

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT M+ ++L  N    ++   +  +T ++ L ++ + +    P   +NL  + SL L+YN
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + LT L   
Sbjct: 188 QIEDISPLASLTSLHYF 204

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT++  + L+ + ++   P  +  LTK+++LNL  N+   +  +  SN+  +  L ++ +
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTES 165

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + LT L +L
Sbjct: 166 KVKDVTPIANLTDLYSL 182

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT ++ + L+ N++    P  +  LT +H      N +T   P   +N+ ++ SL +  N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + L+ LT L
Sbjct: 232 KITDLSPLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L S+  + ++  K+       I YLT +  LNL+ N +T   P   SNL ++ +L +  N
Sbjct: 43  LESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN 98

Query: 524 LLHGKIPSQLTVLTTL 539
            +     S L  LT L
Sbjct: 99  KI--TDISALQNLTNL 112

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           +T +  + +  NK+T   P  +  L+++  L +  N ++        +L +++ L++  N
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 524 LLHGKIP-SQLTVLTTL 539
            +      + L+ L +L
Sbjct: 276 QISDISVLNNLSQLNSL 292

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 3e-31
 Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 33/331 (9%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVS 102
           N   +        + P  L+++   +E L L +  +      +F         +  L + 
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMG 101

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPER 162
            N  + ++P  +   +P L    L RN  +      F +   L  L +S N L   I + 
Sbjct: 102 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLY 222
                 SL+ L LS+N L     S    + +L    +  N  S     +L+    +  L 
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLS-----TLAIPIAVEELD 211

Query: 223 LSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS 282
            S N ++  +         L  + + +NNL             L  +DLS N +   +  
Sbjct: 212 ASHNSIN-VVRG--PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYH 266

Query: 283 CFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
            F     +E++++S N++   L       P L  LDLS+N L   +     +  +L  L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           L +N I   + +       ++ + LSHN+  
Sbjct: 325 LDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (309), Expect = 7e-31
 Identities = 61/340 (17%), Positives = 129/340 (37%), Gaps = 23/340 (6%)

Query: 36  TFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK 95
                L +     + ++        +  +      N + +   N+++       + S ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
           +  L++++   +  I      Y   + +  +  NA     P  F ++ +L  L +  N L
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 156 TGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
           +  +P  +      L  L++SNN    ++   F    + T+L  LQL  N  +  +  SL
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLT-HVDLSL 184

Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
                L    +S N LS      L     + ++   +N++     +       L IL L 
Sbjct: 185 --IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQ 234

Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
           +N +        +   + +V LS N++E  +         L  L +S N L  ++     
Sbjct: 235 HNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
            +P L  L L++N++   +     Q   ++ + L HN++ 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (295), Expect = 6e-29
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 22/287 (7%)

Query: 94  QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
                +   N+  +  +P  +      +   NL+          +FA    + +L + +N
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 154 QLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
            +   +P  +      L +L L  N   SL   IF        L TL +  NN      +
Sbjct: 104 AIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDD 159

Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
           +      L  L LS N L+  +   L  +  L    +  N L             +  LD
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELD 211

Query: 271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR 330
            S+N+I            +  + L  N +     + + + P LV +DLSYN L   + + 
Sbjct: 212 ASHNSINVVRGPVNV--ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
             ++ +L  L ++NN +   + +    +  ++++DLSHN+L  H+  
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 11/165 (6%)

Query: 221 LYLSDNHLSGEIPRWLGNLSF-----LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT 275
               D H+  +                  +   N+ +  L        R + +L+L++  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 276 IFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DR 333
           I       F+ A+ I+++++  N I      V  + P L  L L  N L  S+P  I   
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 334 LPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLSGHIPP 377
            P+L+ L ++NN +E  I     Q    +Q + LS N L+ H+  
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL 182

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 232 IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAY-IE 290
           I   L       D+ +     +     E   L   +I+   N+T+     +       +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 291 QVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEG 349
            ++L+  +IE         +  +  L + +N +   +P  +   +P L+ L+L  N +  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 350 EIPVQL-CQLKEVQLIDLSHNNLSGHIPP 377
            +P  +     ++  + +S+NNL   I  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
              +  +DLS N+L  +I       + ++  L +S+N L   +      +  ++ LDLS+
Sbjct: 247 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L   +         L
Sbjct: 305 NHLL-HVERNQPQFDRL 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           +  +  + L  N L+  +P  I     K+  L++S+NNL      TF     +++L LS 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L     S +  L   
Sbjct: 175 NRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
              +  ++L+  ++  EI T    Y   I  L +  N +    P  F N+  +  L L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 523 NLL---HGKIPSQLTVLTTL 539
           N L      I      LTTL
Sbjct: 127 NDLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L  N LT +    +     +  ++LS+N L   +   F  ++++E L +S N L   +
Sbjct: 231 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 530 PSQLTVLTTL 539
                 + TL
Sbjct: 288 NLYGQPIPTL 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           + ++  +DLS N L   +        ++  L L HN++  T+    S    +++L LS+N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349

Query: 524 LLH 526
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL---LH 526
           +    + +       +    ++  LNL+   +       F+    I+ L + +N    L 
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 527 GKIPSQLTVLTTL 539
             +   + +LT L
Sbjct: 110 PHVFQNVPLLTVL 122

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           I  ++  +D S N +   +   +    ++  L L HNNLT        N   +  +DLSY
Sbjct: 203 IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSY 257

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N L  KI      ++  L  L
Sbjct: 258 NELE-KIMYHPFVKMQRLERL 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (307), Expect = 5e-31
 Identities = 56/271 (20%), Positives = 99/271 (36%), Gaps = 35/271 (12%)

Query: 113 EIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI 172
           EI           ++ ++   ++ S       +  LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
           L LS+N L         SL+ L TL L+ N         L     +  L+ ++N++S  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--------FGTLPSCF 284
                      +I + NN +  L  ++      ++ LDL  N I          +  +  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDS---PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
               +E ++L  N I       +        L TLDLS N L   +         ++++ 
Sbjct: 171 ----LEHLNLQYNFI-----YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           L NN +   I   L   + ++  DL  N   
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 7e-28
 Identities = 49/309 (15%), Positives = 102/309 (33%), Gaps = 41/309 (13%)

Query: 65  LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124
           + +N    +   + ++SL                               +      + E 
Sbjct: 5   IKQNGNRYKIEKVTDSSL-------------------------KQALASLRQSAWNVKEL 39

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
           +LS N  +    +  A    L  L++S N L  E  +       +L  L L+NN +    
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV---- 92

Query: 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVD 244
             +     ++ TL    NN S  +  S    +    +YL++N ++       G  S +  
Sbjct: 93  -QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 245 IIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL 303
           + +  N ++ +           L  L+L  N I+  +      A ++ + LS NK+   +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQL 363
                 +  +  + L  N L   I   +     L +  L  N       ++    K  ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 364 IDLSHNNLS 372
             ++   + 
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 20/230 (8%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  LNLS     E  +  +E+ + L TL L NN +       +     + TL  +NN  
Sbjct: 59  KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
              +         G     L+ N               +  LD+  N++       +A  
Sbjct: 112 S-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
             +LE L L  N +       +     L TL L  N  +  +         +  + L +N
Sbjct: 168 SDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
            L   I + L     L    +  N       +     +  R+  ++  T+
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 15/200 (7%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
           +       ++  ++    +         +  L LS N LS      L   + L  + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
           N L   +      L  LR LDL+NN +   L    S   IE +H + N I     S +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-QELLVGPS---IETLHAANNNI-----SRVSC 116

Query: 310 S--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG-EIPVQLCQLKEVQLIDL 366
           S       + L+ N +            ++ YL L  N I+             ++ ++L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 367 SHNNLSGHIPPCLVNTSLSE 386
            +N +   +   +V   L  
Sbjct: 177 QYNFIY-DVKGQVVFAKLKT 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 19/170 (11%)

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
           I E      R     ++D+ L   +     +   + ++ +  N L  +   +      L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 268 ILDLSNNTI-----FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
           +L+LS+N +       +L +      +  + L+ N +       +   P++ TL  + N 
Sbjct: 62  LLNLSSNVLYETLDLESLST------LRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 323 LHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           +   +            + LANN I     +       VQ +DL  N + 
Sbjct: 111 IS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 12/179 (6%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           +L    +       L  ++  LE L L  N +            KL TLD+S+N     +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL 170
             E      G+   +L  N     I  +    Q L   D+  N           +    +
Sbjct: 207 GPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229
           + +A         +  +      + TL   G     ++P           + L  +H  
Sbjct: 265 QTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPF----ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            ++ + L   + +       +  L+LS N L+       +   ++E L+LS N+L+  + 
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 531 -SQLTVLTTL 539
              L+ L TL
Sbjct: 76  LESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
              +  +DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 524 LLH 526
             H
Sbjct: 248 GFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 303 LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
           +  +  +        ++ + L  ++ +       +  L L+ N +       L    +++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 363 LIDLSHNNLSGHIPP 377
           L++LS N L      
Sbjct: 62  LLNLSSNVLY-ETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           DLS N L+      +   TK+  LNLS N L         +L  + +LDL+ N +  ++ 
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-ELL 96

Query: 531 SQLTVLTTL 539
                + TL
Sbjct: 97  -VGPSIETL 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS 521
                  I L+ NK+T       G  +++  L+L  N +         ++   +E L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 522 YNLLHGKIPS--QLTVLTTL 539
           YN ++  +        L TL
Sbjct: 178 YNFIY-DVKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 481 IPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
           I        +     ++ ++L   + +   +   ++ LDLS N L     + L   T L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH---- 526
             + N ++  +            + L++N +T           +++ LDL  N +     
Sbjct: 105 HAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 527 GKIPSQLTVLTTL 539
            ++ +    L  L
Sbjct: 162 AELAASSDTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 464 LTSMFGIDLSCNKLTG-EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
            + +  +DL  N++              +  LNL +N +   +        ++++LDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSS 200

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L   +  +      +
Sbjct: 201 NKLA-FMGPEFQSAAGV 216

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+++  +DL+ N +      ++     I  L+ ++NN++    +     K   ++ L+ N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130

Query: 524 LLHGKIP----SQLTVLTTL 539
            +   +        + +  L
Sbjct: 131 KIT-MLRDLDEGCRSRVQYL 149

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 1e-29
 Identities = 60/329 (18%), Positives = 128/329 (38%), Gaps = 23/329 (6%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
             + ++        +  +      N + +   N+++       + S +++  L++++   
Sbjct: 29  FYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
           +  I      Y   + +  +  NA     P  F ++ +L  L +  N L+  +P  +   
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 167 CFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223
              L  L++SNN    ++   F    + T+L  LQL  N  +  +  SL     L    +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANV 199

Query: 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSC 283
           S N LS      L     + ++   +N++  +      +   L IL L +N +       
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT-DTAWL 250

Query: 284 FSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLA 343
            +   + +V LS N++E  +         L  L +S N L  ++      +P L  L L+
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 344 NNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           +N++   +     Q   ++ + L HN++ 
Sbjct: 310 HNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 1e-27
 Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 22/287 (7%)

Query: 94  QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYN 153
                +   N+  +  +P  +      +   NL+          +FA    + +L + +N
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 154 QLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
            +   +P  +      L +L L  N   SL   IF        L TL +  NN      +
Sbjct: 110 AIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDD 165

Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
           +      L  L LS N L+  +   L  +  L    +  N L  L          +  LD
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAI-----PIAVEELD 217

Query: 271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR 330
            S+N+I            +  + L  N +     + + + P LV +DLSYN L   + + 
Sbjct: 218 ASHNSINVVRGPVNV--ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273

Query: 331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
             ++ +L  L ++NN +   + +    +  ++++DLSHN+L  H+  
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 2e-27
 Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 35/353 (9%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVS 102
            +  LNL+     E   +       ++ L +  N++       F     +   L  L + 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLE 131

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPER 162
            N     +P  I    P L   ++S N        +F     L  L +S N+LT  +   
Sbjct: 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS 189

Query: 163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLY 222
           +     SL    +S N L     S       +  L    N+ +  +   +     L  L 
Sbjct: 190 LIP---SLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILK 238

Query: 223 LSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS 282
           L  N+L+ +   WL N   LV++ +  N LE ++   F +++ L  L +SNN +   L  
Sbjct: 239 LQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNL 295

Query: 283 CFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL 341
              P   ++ + LS N +   +E   P    L  L L +N +  ++   +     L  L 
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLT 351

Query: 342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAP 394
           L++N  +      L   + V    +   +    I   L +    +  D+P   
Sbjct: 352 LSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 9e-17
 Identities = 61/377 (16%), Positives = 120/377 (31%), Gaps = 59/377 (15%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSG----EFPNWLVENNTNLE 73
            LT + L       +  G F              L+ L++S        +   +  T+L+
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHN---------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 74  TLLLANNSL----FGSFR------------MPIHSHQKLATLDVSNNFFQGHIPVEIGTY 117
            L L++N L                       +     +  LD S+N     +   +   
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--- 230

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
              L    L  N    +  +   +   L  +D+SYN+L  +I          LE L +SN
Sbjct: 231 NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 287

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
           N L   +      +  L  L L  N+    +  +  +  RL  LYL  N +   +   L 
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 342

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297
               L ++ + +N+ +             R  +++   +      C     +E     K 
Sbjct: 343 THHTLKNLTLSHNDWD-----CNSLRALFR--NVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE--GEIPVQL 355
             +  L+ ++        +             R      ++ +   ++YI   G +P+Q 
Sbjct: 396 SDKPYLDRLLQYIALTSVV-----EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQG 450

Query: 356 CQLKEVQLIDLSHNNLS 372
            +  E ++ +L      
Sbjct: 451 NEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
              +  +DLS N+L   +      + ++  L +S+N L   +      +  ++ LDLS+N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 524 LLHGKIPSQLTVLTTL 539
            L   +         L
Sbjct: 312 HLL-HVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           +  +  + L  N L+  +P  I     K+  L++S+NNL      TF     +++L LS 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 523 NLLHGKIPSQLTVLTTL 539
           N L     S +  L   
Sbjct: 181 NRLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
              +  ++L+  ++  EI T    Y   I  L +  N +    P  F N+  +  L L  
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 523 NLLH---GKIPSQLTVLTTL 539
           N L      I      LTTL
Sbjct: 133 NDLSSLPRGIFHNTPKLTTL 152

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L  N LT +    +     +  ++LS+N L   +   F  ++++E L +S N L   +
Sbjct: 237 LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 530 PSQLTVLTTLAV 541
                 + TL V
Sbjct: 294 NLYGQPIPTLKV 305

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           + ++  +DLS N L   +        ++  L L HN++  T+    S    +++L LS+N
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

Query: 524 LLH 526
              
Sbjct: 356 DWD 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (306), Expect = 1e-29
 Identities = 64/349 (18%), Positives = 110/349 (31%), Gaps = 49/349 (14%)

Query: 69  NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR 128
           N     L +  + L     +P      + TL + +N     +P         L    +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 129 NAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKK 188
           N    S+P     +  L+        L              L  L +  N L     S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 189 FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMP 248
                L  L +  N  +  +P   S+  +L   +  +N L+  +P     L  L    + 
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQEL---SVS 189

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
           +N L  L P    +L  L   +    +    LP+   P+ ++++ +S N++       +P
Sbjct: 190 DNQLASL-PTLPSELYKLWAYNNRLTS----LPA--LPSGLKELIVSGNRLTS-----LP 237

Query: 309 DSP-NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
             P  L  L +S N L  S+P        L  L +  N +   +P  L  L     ++L 
Sbjct: 238 VLPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNA 416
            N LS           ++                AS    +       A
Sbjct: 293 GNPLS--ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 6e-27
 Identities = 72/338 (21%), Positives = 124/338 (36%), Gaps = 53/338 (15%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
             + LN+        P+       ++ TL++ +N+L     +P     +L TL+VS N  
Sbjct: 41  GNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
              +PV     L  L  F+                   L +L I  NQLT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
              L+ L++S+N L     S     + L  L    N  +  +P   S  + L    +SDN
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDN 191

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            L+  +P     L  L      NN L  L P     L+    L +S N +  +LP    P
Sbjct: 192 QLA-SLPTLPSELYKL---WAYNNRLTSL-PALPSGLK---ELIVSGNRL-TSLPV--LP 240

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345
           + ++++ +S N++       +P  P  L++L +  N L   +P  +  L   + + L  N
Sbjct: 241 SELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTS 383
            +       L ++        S   +   +        
Sbjct: 295 PLSERTLQALREIT--SAPGYSGPIIRFDMAGASAPRE 330

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 3e-15
 Identities = 48/216 (22%), Positives = 73/216 (33%), Gaps = 23/216 (10%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
            L  L++S      L    + L  L   NN L  S  M       L  L VS+N     +
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQL-TSLPMLPSG---LQELSVSDNQLA-SL 196

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL 170
           P      L  L  +N    +              L  L +S N+LT  +P   +     L
Sbjct: 197 PTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-SLPVLPS----EL 243

Query: 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG 230
           + L +S N L     S     + L++L +  N  +  +PESL        + L  N LS 
Sbjct: 244 KELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 231 EIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL 266
              + L  ++       P    +        + R L
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 17/134 (12%)

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
                 +  +  C      +L++  + +  TLP C  PA+I  + +  N +     + +P
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVIPDNNL-----TSLP 77

Query: 309 DS-PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
              P L TL++S N L  S+P     L +LS       ++   +P  LC+L       + 
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIF 129

Query: 368 HNNLSGHIPPCLVN 381
            N L+  +P     
Sbjct: 130 GNQLT-SLPVLPPG 142

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +++  + LT  +P  +     I  L +  NNLT ++P     L+   +L++S N L   +
Sbjct: 45  LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SL 96

Query: 530 PSQLTVLTTLAVF 542
           P     L  L++F
Sbjct: 97  PVLPPGLLELSIF 109

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            +S N+LT  +P     L     L++  N LT  +P +  +L    +++L  N L  +  
Sbjct: 247 MVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 531 SQLTVLTTL 539
             L  +T+ 
Sbjct: 302 QALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
               N+LT  +P     L +   L++S N L  ++PT  S L     L    N L   +P
Sbjct: 167 WAYNNQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLP 217

Query: 531 SQLTVLTTLAV 541
           +  + L  L V
Sbjct: 218 ALPSGLKELIV 228

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           ++S N+LT  +P     L ++   +    +L        +    +  L +  N L   +P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLP 137

Query: 531 SQLTVLTTL 539
                L  L
Sbjct: 138 VLPPGLQEL 146

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            +S N+L   +PT    L K   L   +N LT ++P   S LK    L +S N L   +P
Sbjct: 187 SVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRL-TSLP 237

Query: 531 SQLTVLTTL 539
              + L  L
Sbjct: 238 VLPSELKEL 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            +S N+LT  +P     L +   L +S N LT ++P   S L    SL +  N L  ++P
Sbjct: 227 IVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLP 277

Query: 531 SQLTVLTTLAV 541
             L  L++   
Sbjct: 278 ESLIHLSSETT 288

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 462 RILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
            + + +  + +  N+LT  +P     L +   L++S N L  ++P   S L     L   
Sbjct: 118 ALPSGLCKLWIFGNQLT-SLPVLPPGLQE---LSVSDNQLA-SLPALPSELC---KLWAY 169

Query: 522 YNLLHGKIPSQLTVLTTL 539
            N L   +P   + L  L
Sbjct: 170 NNQLT-SLPMLPSGLQEL 186

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (302), Expect = 2e-29
 Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 32/338 (9%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  + ++     +     + N TNL  L L NN +      P+ +   L  L++S+N  
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
                +     L  L + +        +     A++  L RLDIS N+++          
Sbjct: 147 SDISALS---GLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDISV---LAK 197

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
             +LE L  +NN +          LTNL  L L+GN        +L+    L  L L++N
Sbjct: 198 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 253

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            +S   P  L  L+ L ++ +  N +  + P+    L  L  L+L+ N +   +    + 
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED-ISPISNL 308

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346
             +  + L  N I     S +     L  L    N +  S  + +  L  +++L   +N 
Sbjct: 309 KNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQ 364

Query: 347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384
           I    P  L  L  +  + L+    +        N S+
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 2e-28
 Identities = 88/363 (24%), Positives = 141/363 (38%), Gaps = 30/363 (8%)

Query: 15  NSLTPKFQLTSI-SLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLE 73
                +  L  + +L     G      + + ++L   N S+  L+   P   ++N T L 
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLV 93

Query: 74  TLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
            +L+ NN +      P+ +   L  L + NN      P++    L  L    LS N  + 
Sbjct: 94  DILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISD 148

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTN 193
              S+ + +  L +L    NQ+T   P        +LE L +S+N +     S    LTN
Sbjct: 149 --ISALSGLTSLQQLSFG-NQVTDLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTN 200

Query: 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
           L +L    N  S   P  L     L  L L+ N L       L +L+ L D+ + NN + 
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 256

Query: 254 GLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNL 313
            L P+    L  L  L L  N I   +        +  + L++N++E    S I +  NL
Sbjct: 257 NLAPLS--GLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLED--ISPISNLKNL 311

Query: 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
             L L +N +    P  +  L +L  L   NN +       L  L  +  +   HN +S 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 374 HIP 376
             P
Sbjct: 368 LTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (279), Expect = 2e-26
 Identities = 71/340 (20%), Positives = 126/340 (37%), Gaps = 29/340 (8%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           L +A ++      +               +L   ++  +  +      ++ TL       
Sbjct: 3   LGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRL-- 56

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
                  +  YL  L + N S N      P    ++  L  + ++ NQ+    P      
Sbjct: 57  GIKSIDGVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LAN 110

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
             +L  L L NN +      K   LTNL  L+L  N  S     +LS    L  L    N
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-N 165

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            ++   P  L NL+ L  + + +N +  +  +   +L  L  L  +NN I   +      
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQI-SDITPLGIL 220

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346
             ++++ L+ N+++      +    NL  LDL+ N +    P  +  L +L+ L L  N 
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
           I    P  L  L  +  ++L+ N L   I P     +L+ 
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLED-ISPISNLKNLTY 313

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 6e-25
 Identities = 67/326 (20%), Positives = 117/326 (35%), Gaps = 30/326 (9%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           NL+ L LS     +     +   T+L+ L   N         P+ +   L  LD+S+N  
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKV 189

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
                + +   L  L     + N  +   P     +  L  L ++ NQL  +I       
Sbjct: 190 SD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT--LAS 241

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
             +L  L L+NN +     +    LT L  L+L  N  S   P  L+    L  L L++N
Sbjct: 242 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            L    P  + NL  L  + +  NN+  + P+    L  L+ L   NN +   + S  + 
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKV-SDVSSLANL 352

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346
             I  +    N+I     + + +   +  L L+      +  N    +   + +      
Sbjct: 353 TNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 347 IEGEIPVQLCQLKEVQLIDLSHNNLS 372
           +    P  +         D++ N  S
Sbjct: 411 L--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 12/166 (7%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           L    L   N+S   P   V + T L+ L   NN +       + +   +  L   +N  
Sbjct: 311 LTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
               P+     L  + +  L+  A+  +  +       ++  +   N     I     + 
Sbjct: 366 SDLTPLA---NLTRITQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATISD 419

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
             S     ++ N          ++ +  +T+      FSG + + L
Sbjct: 420 GGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT +  + L  N+++   P  +  LT +  L L+ N L    P   SNLK +  L L +N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P S LT L  L
Sbjct: 320 NISDISPVSSLTKLQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L ++  + L  N ++   P  +  LTK+  L   +N ++    ++ +NL  I  L   +N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 363

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + LT +T L
Sbjct: 364 QISDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT++  +  + N+++   P  +G LT +  L+L+ N L      T ++L  +  LDL+ N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 253

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P S LT LT L
Sbjct: 254 QISNLAPLSGLTKLTEL 270

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  +      +       + YL  +  +N S+N LT   P    NL ++  + ++ N
Sbjct: 45  LDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 100

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P + LT LT L
Sbjct: 101 QIADITPLANLTNLTGL 117

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT++  +DL+ N+++   P  +  LTK+  L L  N ++   P   + L  + +L+L+ N
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297

Query: 524 LLHGKIP-SQLTVLTTL 539
            L    P S L  LT L
Sbjct: 298 QLEDISPISNLKNLTYL 314

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT +  I ++ N++    P  +  LT +  L L +N +T   P    NL  +  L+LS N
Sbjct: 89  LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144

Query: 524 LLHGKIP-SQLTVLTTL 539
            +      S LT L  L
Sbjct: 145 TISDISALSGLTSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L  N++T   P  +  LT ++ L LS N ++    +  S L  ++ L     +   K 
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP 172

Query: 530 PSQLTVLTTL 539
            + LT L  L
Sbjct: 173 LANLTTLERL 182

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT++  ++L+ N+L    P  I  L  +  L L  NN++   P   S+L +++ L    N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 524 LLHGKIP-SQLTVLTTL 539
            +      + LT +  L
Sbjct: 342 KVSDVSSLANLTNINWL 358

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LTS+  +    N++T   P  +  LT +  L++S N ++    +  + L  +ESL  + N
Sbjct: 155 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209

Query: 524 LLHGKIP-SQLTVLTTL 539
            +    P   LT L  L
Sbjct: 210 QISDITPLGILTNLDEL 226

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 6e-29
 Identities = 64/376 (17%), Positives = 125/376 (33%), Gaps = 23/376 (6%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L  + L       I+G  F    Y    L++ +LS  +LS    +W     ++L+ L L
Sbjct: 51  NLQVLILKSSRINTIEGDAF----YSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNL 105

Query: 78  ANNSLFG-SFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP 136
             N            +   L TL + N      I       L  L E  +   +      
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 137 SSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT 196
            S   ++ +  L +  ++    + E  A    S+  L L + +L    FS          
Sbjct: 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI 256
           ++      S    ES ++  +L    L  + +         + +         +  + + 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVS 278

Query: 257 PIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVT 315
            +   +   +R L +    +F  L + +S    ++++ +  +K+     S      +L  
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 316 LDLSYNCLHGSI---PNRIDRLPQLSYLLLANNYIE--GEIPVQLCQLKEVQLIDLSHNN 370
           LDLS N +              P L  L+L+ N++    +    L  LK +  +D+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 371 LSGHIPPCLVNTSLSE 386
                  C     +  
Sbjct: 399 FHPMPDSCQWPEKMRF 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (289), Expect = 2e-27
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 27/344 (7%)

Query: 50  ANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH 109
            +    + +   P+ L      +++L L+ N +       + +   L  L + ++     
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169
           I  +    L  L   +LS N  +    S F  +  L  L++  N         +     +
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 170 LEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
           L+ L + N      I    F+ LT+L  L++   +      +SL   R +  L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEF-----------CQLRFLRILDLSNNTIF 277
           +  +  +   LS +  + + + NL                      R   + D S N + 
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIP--------DSPNLVTLDLSYNCLHGSIPN 329
             L      + +E    + N +     S           ++  +  L +    L   +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLS 372
               L ++  + + N+ +   +P    Q LK ++ +DLS N + 
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 7e-27
 Identities = 57/373 (15%), Positives = 128/373 (34%), Gaps = 32/373 (8%)

Query: 22  QLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
            L  ++L G             +  +L+   + ++    E         T+L  L +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 81  SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA 140
           SL       + S + +  L +  +     +       L  +    L          S   
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 141 DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD 200
             ++ + +     + +  + +        L    L  + ++        +L  L      
Sbjct: 218 VDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE----FDDCTLNGLGDFNPS 272

Query: 201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEF 260
            ++   E+     +   +  L++   +L  ++      L  +  I + N+ +  +     
Sbjct: 273 ESDVVSEL--GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 261 CQLRFLRILDLSNNTI----------FGTLPSCFSPAYIEQVHLSKNKIE--GRLESVIP 308
             L+ L  LDLS N +           G  PS      ++ + LS+N +    +   ++ 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPS------LQTLVLSQNHLRSMQKTGEILL 384

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
              NL +LD+S N  H  +P+      ++ +L L++  I     V+ C  + ++++D+S+
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSN 440

Query: 369 NNLSGHIPPCLVN 381
           NNL       L  
Sbjct: 441 NNLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 3e-26
 Identities = 63/394 (15%), Positives = 120/394 (30%), Gaps = 45/394 (11%)

Query: 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSG 206
            D      T  IP  +     +++ L LS N +  +I         NL  L L  +  + 
Sbjct: 10  CDGRSRSFT-SIPSGLTA---AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT 64

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRF 265
              ++      L  L LSDNHLS     W G LS L  + +  N  + L +   F  L  
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG 325
           L+ L + N   F  +                               +L  L++    L  
Sbjct: 125 LQTLRIGNVETFSEIR----------------------RIDFAGLTSLNELEIKALSLRN 162

Query: 326 SIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLS 385
                +  +  + +L L  +     + +    L  V+ ++L   NL+      L    +S
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 386 EGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE 445
               +     S     +        +  L  +      C                 +   
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC----------------TLNGL 266

Query: 446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI 505
                +  ++          ++  + +    L  ++ T    L K+  + + ++ +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 506 PTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
            +   +LK +E LDLS NL+  +           
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (256), Expect = 2e-23
 Identities = 62/377 (16%), Positives = 123/377 (32%), Gaps = 43/377 (11%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            L  + +           +         D+ +  L     +        +  +++  L L
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSI----RDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203

Query: 78  ANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIP------VEIGTYLPGLMEFNLSRNAF 131
            + +L      P+   +  + +                  +++  Y+  L E        
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 132 NGSIPSSFADMQM-----------LARLDISYNQLTGEIPERMATGCFSLEILALSNNSL 180
           NG    + ++  +           + RL I    L       + +    ++ + + N+ +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKV 322

Query: 181 QGHIFSKKFS-LTNLMTLQLDGNNFSGEIPES---LSKCRRLGGLYLSDNHLS--GEIPR 234
              +       L +L  L L  N    E  ++         L  L LS NHL    +   
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 235 WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHL 294
            L  L  L  + +  N     +P        +R L+LS+  I   + +C  P  +E + +
Sbjct: 382 ILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI-RVVKTCI-PQTLEVLDV 438

Query: 295 SKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ 354
           S N     L+S     P L  L +S N L  ++P+     P L  + ++ N ++      
Sbjct: 439 SNN----NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492

Query: 355 LCQLKEVQLIDLSHNNL 371
             +L  +Q I L  N  
Sbjct: 493 FDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 30/231 (12%)

Query: 21  FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
             +  + +  +               +K   + +  +    P    ++  +LE L L+ N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 81  ---SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGT--YLPGLMEFNLSRNAFNGSI 135
                +        +   L TL +S N  +  +         L  L   ++SRN F+  +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 136 PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG------------- 182
           P S    + +  L++S   +   +   +     +LE+L +SNN+L               
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ---TLEVLDVSNNNLDSFSLFLPRLQELYI 458

Query: 183 -----HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
                           L+ +++  N           +   L  ++L  N  
Sbjct: 459 SRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 46/337 (13%), Positives = 100/337 (29%), Gaps = 40/337 (11%)

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
           C   G         +  IP  L   + +  + +  N +  +   +      L++L L ++
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 275 TIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG-SIPNRID 332
            I       F     +E + LS N +     S      +L  L+L  N      + +   
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 333 RLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIPPCLVN-TSLSEGHDE 390
            L  L  L + N     EI       L  +  +++   +L  +    L +   +      
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH---- 176

Query: 391 PVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQF 450
                                  L+ +             ++ Y+  R   + + +    
Sbjct: 177 -------------------LTLHLSESAFLLEIFADILS-SVRYLELRDTNLARFQFSPL 216

Query: 451 TTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS 510
               +S   +          D S N+L  ++   I  L+++   + + N L    P+   
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 511 NLK--------QIESLDLSYNLLHGKIPSQLTVLTTL 539
            +          I  L +    L   + +  ++L  +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 470 IDLSCNKLT--GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH- 526
           + LS N L    +    +  L  + +L++S N     +P +    +++  L+LS   +  
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424

Query: 527 --GKIPSQLTVL 536
               IP  L VL
Sbjct: 425 VKTCIPQTLEVL 436

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 9e-26
 Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 40/293 (13%)

Query: 98  TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG 157
            LD+ NN     I       L  L    L  N  +   P +FA +  L RL +S NQL  
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 158 EIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNF-SGEIPE-SL 212
           E+PE+M     +L+ L +  N    ++  +F+    L  ++ ++L  N   S  I   + 
Sbjct: 114 ELPEKMPK---TLQELRVHENEITKVRKSVFNG---LNQMIVVELGTNPLKSSGIENGAF 167

Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
              ++L  + ++D +++  IP+  G    L ++ +  N +  +       L  L  L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 273 NNTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG 325
            N+I           P       + ++HL+ NK+  ++   + D   +  + L  N +  
Sbjct: 225 FNSISAVDNGSLANTPH------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS- 276

Query: 326 SIPNR-------IDRLPQLSYLLLANNYIE-GEIPVQLCQ-LKEVQLIDLSHN 369
           +I +          +    S + L +N ++  EI     + +     + L + 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 8e-24
 Identities = 64/308 (20%), Positives = 112/308 (36%), Gaps = 44/308 (14%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDV 101
           DL+N  ++ +   G+F N       NL TL+L NN +     G+F        KL  L +
Sbjct: 58  DLQNNKITEIK-DGDFKNL-----KNLHTLILINNKISKISPGAF----APLVKLERLYL 107

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLT-GEIP 160
           S N  +  +P ++      L E  +  N       S F  +  +  +++  N L    I 
Sbjct: 108 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 161 ERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLG 219
                G   L  + +++ ++   I        +L  L LDGN  + ++   SL     L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLA 219

Query: 220 GLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT 279
            L LS N +S      L N   L ++ + NN L   +P      ++++++ L NN I   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL-HGSIPNRI-DRLPQL 337
             + F P                         +   + L  N + +  I       +   
Sbjct: 279 GSNDFCPPGYNT-----------------KKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 338 SYLLLANN 345
           + + L N 
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 21/234 (8%)

Query: 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFS 205
            LD+  N++T EI +       +L  L L NN +   I    F+ L  L  L L  N   
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK 113

Query: 206 GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE--GLIPIEFCQL 263
            E+PE +   + L  L + +N ++         L+ ++ + +  N L+  G+    F  +
Sbjct: 114 -ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 264 RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-----PNLVTLDL 318
           + L  + +++  I  T+P    P  + ++HL  NKI     + +  +      NL  L L
Sbjct: 171 KKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKI-----TKVDAASLKGLNNLAKLGL 223

Query: 319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           S+N +       +   P L  L L NN +  ++P  L   K +Q++ L +NN+S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 11/187 (5%)

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           +L  +Q        ++P+ L        L L +N ++        NL  L  +I+ NN +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPN 312
             + P  F  L  L  L LS N +   LP    P  ++++ + +N+I    +SV      
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQL-KELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 313 LVTLDLSYNCLHGS-IPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
           ++ ++L  N L  S I N     + +LSY+ +A+  I   IP  L     +  + L  N 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 371 LSGHIPP 377
           ++  +  
Sbjct: 204 IT-KVDA 209

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
            L  NK+T ++       L  +  L LS N+++     + +N   +  L L+ N L  K+
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 530 PSQLTVLTTL 539
           P  L     +
Sbjct: 256 PGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL---H 526
           +DL  NK+T         L  +H L L +N ++   P  F+ L ++E L LS N L    
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116

Query: 527 GKIPSQLTVL 536
            K+P  L  L
Sbjct: 117 EKMPKTLQEL 126

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L ++  + LS N ++      +     +  L+L++N L   +P   ++ K I+ + L  N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 524 LL 525
            +
Sbjct: 274 NI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           +  +  I ++   +T  IP   G    +  L+L  N +T     +   L  +  L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 524 LLHGKIP----SQLTVLTTL 539
            +   +     +    L  L
Sbjct: 227 SIS-AVDNGSLANTPHLREL 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  106 bits (266), Expect = 9e-25
 Identities = 76/372 (20%), Positives = 131/372 (35%), Gaps = 75/372 (20%)

Query: 45  HDLKNANLSHLNLSG----EFPNWLVENNTNLETLLLANNSL------FGSFRMPIHSH- 93
            D  +     L L+       P        +LE+L+ + NSL        S +  +  + 
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNN 121

Query: 94  ---------QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQM 144
                      L  L VSNN  +  +P E+      L   ++  N+    +P        
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK-KLPDLPPS--- 174

Query: 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNF 204
           L  +    NQL  E+PE        L  +   NNSL+  +        +L ++    N  
Sbjct: 175 LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL 227

Query: 205 SGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLR 264
                  L     L  +Y  +N L   +P    +L  L    + +N L  L P     L 
Sbjct: 228 E--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTDL-PELPQSLT 280

Query: 265 FLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
           FL + +   + +    P+      +  ++ S N+I     S+    P+L  L++S N L 
Sbjct: 281 FLDVSENIFSGLSELPPN------LYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI 330

Query: 325 GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV---------------QLIDLSHN 369
             +P      P+L  L+ + N++  E+P     LK++                + DL  N
Sbjct: 331 -ELPALP---PRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385

Query: 370 NLSGHIPPCLVN 381
           +    +P    N
Sbjct: 386 SHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 1e-24
 Identities = 70/321 (21%), Positives = 120/321 (37%), Gaps = 44/321 (13%)

Query: 68  NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYL--------- 118
           +NT L+  L  +++L     +   + +       + + ++ + P   G            
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 119 ---PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
                  E  L+    + S+P        L  L  S N LT E+PE       SL +   
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELP-QSLKSLLVDNN 121

Query: 176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW 235
           +  +L             L  L +  N    ++PE L     L  + + +N L  ++P  
Sbjct: 122 NLKALSDLP-------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 236 LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS 295
             +L F+      NN LE L   E   L FL  +   NN++   LP    P  +E +   
Sbjct: 172 PPSLEFI---AAGNNQLEEL--PELQNLPFLTAIYADNNSL-KKLPD--LPLSLESIVAG 223

Query: 296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQL 355
            N +E  L   + + P L T+    N L  ++P   D  P L  L + +NY+  ++P   
Sbjct: 224 NNILE-ELPE-LQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLT-DLPELP 276

Query: 356 CQLKEVQLIDLSHNNLSGHIP 376
             L  + + +   + LS   P
Sbjct: 277 QSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 2e-24
 Identities = 68/369 (18%), Positives = 129/369 (34%), Gaps = 76/369 (20%)

Query: 44  QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-------------FRMPI 90
           +    ++NL+ + +         EN  +      A +    +              R+  
Sbjct: 15  EPLRHSSNLTEMPVE-------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 91  HSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDI 150
              ++   L+++N      +P         L     S N+    +P     ++ L   + 
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 151 SYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
           +   L+   P         LE L +SNN L+     +  + + L  + +D N+   ++P+
Sbjct: 122 NLKALSDLPP--------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPD 170

Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
                     +   +N L  E+P  L NL FL  I   NN+L+ L          L  + 
Sbjct: 171 LPPSLEF---IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPD----LPLSLESIV 221

Query: 271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLHGSIPN 329
             NN +   LP   +  ++  ++   N +       +PD  P+L  L++  N L   +P 
Sbjct: 222 AGNNIL-EELPELQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDNYLT-DLPE 274

Query: 330 RIDRL-----------------PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
               L                 P L YL  ++N I   +      L+E   +++S+N L 
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI 330

Query: 373 GHIPPCLVN 381
             +P     
Sbjct: 331 -ELPALPPR 338

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 5e-22
 Identities = 54/342 (15%), Positives = 100/342 (29%), Gaps = 62/342 (18%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  +++      + P+       +LE +   NN L       + +   L  +   NN  
Sbjct: 154 FLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSL 207

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
           +  +P    +    L       N           ++  L  +    N L   +P+     
Sbjct: 208 K-KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD----L 255

Query: 167 CFSLEILALSNNSLQG--------------HIFSKKFS--LTNLMTLQLDGNNFSGEIPE 210
             SLE L + +N L                       S    NL  L    N     + +
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCD 314

Query: 211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
                  L  L +S+N L  E+P     L  L   I   N+L  +        + L+ L 
Sbjct: 315 LPPS---LEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPE----LPQNLKQLH 363

Query: 271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR 330
           +  N +    P            +   ++   L  V     NL  L +  N L    P+ 
Sbjct: 364 VEYNPL-REFPDIPE-------SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDI 414

Query: 331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
            +    +  L + +  +            +++     H++  
Sbjct: 415 PE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 26/193 (13%)

Query: 189 FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMP 248
            S T L       +N + E+P      +     Y + +      P   G    +    + 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
           +           C  R    L+L+N  +  +LP    P ++E +  S N +   L  +  
Sbjct: 67  D-----------CLDRQAHELELNNLGL-SSLPE--LPPHLESLVASCNSLT-ELPELPQ 111

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
              +L+  + +   L    P        L YL ++NN +E ++P +L     +++ID+ +
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162

Query: 369 NNLSGHIPPCLVN 381
           N+L   +P    +
Sbjct: 163 NSLK-KLPDLPPS 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 17/84 (20%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT---------------TFSNLKQI 515
             SCN LT E+P     L  +   N +   L+   P                   N   +
Sbjct: 97  VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155

Query: 516 ESLDLSYNLLHGKIPSQLTVLTTL 539
           + +D+  N L  K+P     L  +
Sbjct: 156 KIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            + +  ID+  N L  ++P     L     +   +N L   +P    NL  + ++    N
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-ELPE-LQNLPFLTAIYADNN 205

Query: 524 LLHGKIPSQLTVLTTL 539
            L  K+P     L ++
Sbjct: 206 SLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 21/145 (14%)

Query: 255 LIPIEFCQLRFLRILDLSNNTIFGTLP-SCFSPAYIEQVHLSKNKIEGRLESVIPD---- 309
            I        FL+     ++ +   +P    +     + + + ++ E        +    
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 310 ---------SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360
                          L+L+   L  S+P      P L  L+ + N +  E+P     LK 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKS 115

Query: 361 VQLIDLSHNNLSGHIPPCLVNTSLS 385
           + + + +   LS  +PP L    +S
Sbjct: 116 LLVDNNNLKALSD-LPPLLEYLGVS 139

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  I    N L  ++P     L     +   +N L         NL  + ++    N
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYADNN 247

Query: 524 LLHGKIPSQLTVLTTL 539
           LL   +P     L  L
Sbjct: 248 LLK-TLPDLPPSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             S+  +++S NKL  E+P     L +   L  S N+L   +P    NLK    L + YN
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYN 367

Query: 524 LLHGKIPSQLTVLTTLAV 541
            L  + P     +  L +
Sbjct: 368 PLR-EFPDIPESVEDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 15/82 (18%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL-------------KQIES 517
               + LT E+P +   +        + +      P                   +Q   
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 518 LDLSYNLLHGKIPSQLTVLTTL 539
           L+L+   L   +P     L +L
Sbjct: 76  LELNNLGLS-SLPELPPHLESL 96

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (262), Expect = 3e-24
 Identities = 67/338 (19%), Positives = 121/338 (35%), Gaps = 42/338 (12%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            ++  + L+ NS+           Q L  L V        I       L  L+   L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 130 AFNGSIPSS-FADMQMLARLDISYNQLTG-EIPERMATGCFSLEILALSNNSLQ----GH 183
            F   + +  F  +  L  L ++   L G  +         SLE+L L +N+++      
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 184 IFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC--RRLGGLYLSDNHLSGEIPRWLG---- 237
            F    ++     L L  N       E L     +    L LS   L      WLG    
Sbjct: 149 FFL---NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 238 ----NLSFLVDIIMPNNNLEGLIPIEFCQLRF---LRILDLSNNTI---------FGTLP 281
                 + +  + +  N  +  +   F        ++ L LSN+           F    
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 282 SC----FSPAYIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLHGSIPNRI-DRLP 335
           +        + ++   LSK+KI   L   +     +L  L L+ N ++  I +     L 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 336 QLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLS 372
            L  L L+ N++ G I  ++ + L +++++DLS+N++ 
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 4e-22
 Identities = 65/365 (17%), Positives = 127/365 (34%), Gaps = 52/365 (14%)

Query: 50  ANLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSH-QKLATLDVSNN 104
           A++++++LS     E          +L+ L +   +     R         L  L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSI--PSSFADMQMLARLDISYNQLTGEIPER 162
            F   +       L  L    L++   +G++   + F  +  L  L +  N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 163 MATGCFSLEILALSNN---SLQGHIFSK-------KFSLTNLMTLQLDGNNFSGEIPESL 212
                    +L L+ N   S+                 L+++    ++      E   + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII-------------MPNNNLEGLIPIE 259
            K   +  L LS N     + +   +      I                + N +      
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 260 FCQLRF--LRILDLSNN-------TIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS 310
           F  L    ++  DLS +       ++F           +EQ+ L++N+I  +++      
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTD------LEQLTLAQNEIN-KIDDNAFWG 321

Query: 311 -PNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLS 367
             +L+ L+LS N L GSI +R+ + L +L  L L+ N+I   +  Q    L  ++ + L 
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 368 HNNLS 372
            N L 
Sbjct: 380 TNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 62/315 (19%), Positives = 91/315 (28%), Gaps = 60/315 (19%)

Query: 119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178
             +   +LS N+      +SF+ +Q L  L +        I      G  SL IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 179 SLQGHIFSKKF-SLTNLMTLQLDGNNF-SGEIPE-SLSKCRRLGGLYLSDNHLSGEIPR- 234
                + +  F  L NL  L L   N     +          L  L L DN++    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 235 -----------WLGN-----------------------LSFLVDIIMPNNNLEGLIPIEF 260
                       L                         LS +    M    L        
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 261 CQLRFLRILDLSNNTIFGTLPSCFSPA------YIEQVHLSKNKIEGRLESVIPDSPN-- 312
            +   +  LDLS N    ++   F  A          +  S N       +   D  N  
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 313 --------LVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQ 362
                   + T DLS + +  ++   +      L  L LA N I  +I       L  + 
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 363 LIDLSHNNLSGHIPP 377
            ++LS N L   I  
Sbjct: 327 KLNLSQNFLG-SIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 74/429 (17%), Positives = 131/429 (30%), Gaps = 99/429 (23%)

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLT 192
            +P   A +     +D+S N +  E+ E   +    L+ L +   +    I +  F  L+
Sbjct: 24  QVPELPAHVN---YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL-SGEIPRWLGNLSFLVDIIMPNNN 251
           +L+ L+LD N F      + +    L  L L+  +L    +                   
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF--------------- 124

Query: 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS- 310
                   F  L  L +L L +N                            ++ + P S 
Sbjct: 125 --------FKPLTSLEMLVLRDN---------------------------NIKKIQPASF 149

Query: 311 ----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDL 366
                    LDL++N +       +       + LL              +L  + L D+
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQDM 195

Query: 367 SHNNLSGHIPPCLVN-TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCG 425
           +   L           TS++           S   R       +   A         S  
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF------FDAIAGTKIQSLILSNS 249

Query: 426 RGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI----------LTSMFGIDLSCN 475
                +  +   + P     + ++ +        + +I           T +  + L+ N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 476 KLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-- 532
           ++  +I       LT +  LNLS N L       F NL ++E LDLSYN +   +  Q  
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSF 367

Query: 533 --LTVLTTL 539
             L  L  L
Sbjct: 368 LGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 45/282 (15%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSG----EFPN--WLVENNTNLETL 75
            +  I  + +                       L+L+            L     +   L
Sbjct: 140 NIKKIQPASFFLNMR--------------RFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 76  LLANNSLFGSFRMPIHSH--------QKLATLDVSNNFFQGHIPVEIGTYLPGL------ 121
            L++ +L       +             + TLD+S N F+  +       + G       
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 122 ------MEFNLSRNAFNGSIPSSFADMQM--LARLDISYNQLTGEIPERMATGCFSLEIL 173
                 M  +     F      +F  ++   +   D+S +++   + + + +    LE L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304

Query: 174 ALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI 232
            L+ N +   I    F  LT+L+ L L  N              +L  L LS NH+    
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363

Query: 233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
            +    L  L ++ +  N L+ +    F +L  L+ + L  N
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHL--NLSGEFPNWLVEN--NTNLETLLL 77
                    + D     K             S        +  N+  +    + ++T  L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 78  ANNSLF----GSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
           + + +F      F         L  L ++ N     I       L  L++ NLS+N   G
Sbjct: 283 SKSKIFALLKSVF----SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-G 336

Query: 134 SIPS-SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKF 189
           SI S  F ++  L  LD+SYN +   + ++   G  +L+ LAL  N   S+   IF    
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD--- 392

Query: 190 SLTNLMTLQLDGNNF 204
            LT+L  + L  N +
Sbjct: 393 RLTSLQKIWLHTNPW 407

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 8e-23
 Identities = 62/280 (22%), Positives = 102/280 (36%), Gaps = 39/280 (13%)

Query: 71  NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA 130
               ++     L     +P         L++  N  Q  I  +   +L  L    L RN+
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 131 FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSK 187
                  +F  +  L  L++  N LT  IP         L  L L NN   S+  + F+ 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN- 168

Query: 188 KFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII 246
              + +LM L L        I E +      L  L L   ++  ++P  L  L  L ++ 
Sbjct: 169 --RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESV 306
           M  N+   + P  F  L  L+ L + N+ +          + IE              + 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQV----------SLIE-------------RNA 261

Query: 307 IPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
                +LV L+L++N L  S+P+ +   L  L  L L +N
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 62/264 (23%), Positives = 94/264 (35%), Gaps = 26/264 (9%)

Query: 44  QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATL 99
            +       +   LS E P  +    +N   L L  N++      +F         L  L
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTF----RHLHHLEVL 104

Query: 100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQLTGE 158
            +  N  +  I V     L  L    L  N     IPS +F  +  L  L +  N +   
Sbjct: 105 QLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 159 IPERMATGCFSLEILALSNN----SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
           IP        SL  L L        +    F     L NL  L L   N   ++P +L+ 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIK-DMP-NLTP 216

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
              L  L +S NH     P     LS L  + + N+ +  +    F  L  L  L+L++N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 275 TIFGTLPSCFSP-AYIEQVHLSKN 297
            +       F+P  Y+ ++HL  N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 31/246 (12%)

Query: 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNN 203
            +++  +   L+ E+P+ + +   +   L L  N++Q  I +  F  L +L  LQL  N+
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPS---NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQL 263
                  + +    L  L L DN L+         LS L ++ + NN +E +    F ++
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 264 RFLRILDLSNN--------TIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD---SPN 312
             L  LDL             F  L +      ++ ++L    I       +P+      
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFN------LKYLNLGMCNI-----KDMPNLTPLVG 219

Query: 313 LVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNL 371
           L  L++S N      P     L  L  L + N+ +   I       L  +  ++L+HNNL
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL 278

Query: 372 SGHIPP 377
           S  +P 
Sbjct: 279 S-SLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 23/166 (13%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLAN-NSLF----GSFRMPIHSHQKLATLDV 101
            L  L L        P++      +L  L L     L     G+F         L  L++
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----GLFNLKYLNL 203

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
                +  +P    T L GL E  +S N F    P SF  +  L +L +  +Q++  I  
Sbjct: 204 GMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 162 RMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNF 204
               G  SL  L L++N   SL   +F+    L  L+ L L  N +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFT---PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 16/166 (9%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
           +L  + L       I    F   +     L   +L  L           E   NL+ L L
Sbjct: 148 KLRELWLRNNPIESIPSYAF-NRVPS---LMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 78  ANNSL--FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSI 135
              ++    +          L  L++S N F   I       L  L +  +  +  +   
Sbjct: 204 GMCNIKDMPNLT----PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 136 PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181
            ++F  +  L  L++++N L+  +P  + T    L  L L +N   
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           ++S N      P     L+ +  L + ++ ++      F  L  +  L+L++N L   +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282

Query: 531 ----SQLTVLTTL 539
               + L  L  L
Sbjct: 283 HDLFTPLRYLVEL 295

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           ++L  N +         +L  +  L L  N++       F+ L  + +L+L  N L   I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 530 PSQ----LTVLTTL 539
           PS     L+ L  L
Sbjct: 139 PSGAFEYLSKLREL 152

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L ++  ++L    +  ++P  +  L  +  L +S N+     P +F  L  ++ L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 524 LLHGKIP----SQLTVLTTL 539
            +   I       L  L  L
Sbjct: 253 QVS-LIERNAFDGLASLVEL 271

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  + L  N +  +I       L  ++ L L  N LT      F  L ++  L L  
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N +   IP    +++  L  L
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRL 176

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 528
            L  N +   IP+     +  +  L+L        I    F  L  ++ L+L    +   
Sbjct: 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210

Query: 529 IP--SQLTVLTTL 539
           +P  + L  L  L
Sbjct: 211 MPNLTPLVGLEEL 223

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (249), Expect = 2e-22
 Identities = 66/289 (22%), Positives = 106/289 (36%), Gaps = 46/289 (15%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADM-------QMLARLDISYNQLTGEIPERMATGCFSL 170
           LP    F+LS+N+F  +I  ++AD        +  A    + N+    + E +       
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QF 61

Query: 171 EILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
             L L+  +L     ++         +  L++  N     +PE  +    L  L   DN 
Sbjct: 62  SELQLNRLNLSSLPDNLPP------QITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPA 287
           LS  +P    +L  L    + NN L  L P     L     ++  NN +   LP    P 
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLTML-PELPALLE---YINADNNQL-TMLPE--LPT 160

Query: 288 YIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHGSIPNRIDRLPQLS----YLLL 342
            +E + +  N++       +P+ P +L  LD+S N L  S+P    R         +   
Sbjct: 161 SLEVLSVRNNQLT-----FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 343 ANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP 391
             N I   IP  +  L     I L  N LS  I   L   +    +  P
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.3 bits (242), Expect = 1e-21
 Identities = 48/276 (17%), Positives = 92/276 (33%), Gaps = 34/276 (12%)

Query: 110 IPVEIGTYLPGLMEFNLSRNAFN---GSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
              +  +      +  L     N     +      +   + L ++   L+  +P+ +   
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP- 80

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
              + +L ++ N+L   +        +L  L    N  S  +PE  +  + L    + +N
Sbjct: 81  --QITVLEITQNALI-SLPE---LPASLEYLDACDNRLS-TLPELPASLKHL---DVDNN 130

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            L+  +P     L ++      NN L  L P     L    +L + NN +   LP    P
Sbjct: 131 QLT-MLPELPALLEYI---NADNNQLTML-PELPTSLE---VLSVRNNQL-TFLPE--LP 179

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNL----VTLDLSYNCLHGSIPNRIDRLPQLSYLLL 342
             +E + +S N +E  L +V   + +     +      N +   IP  I  L     ++L
Sbjct: 180 ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 343 ANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPC 378
            +N +   I   L Q              S      
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.3 bits (242), Expect = 1e-21
 Identities = 56/360 (15%), Positives = 106/360 (29%), Gaps = 40/360 (11%)

Query: 51  NLSHLNLSGEFPNWLVE-----NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
                 L GE  N  V             L L   +L     +P +   ++  L+++ N 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL---SSLPDNLPPQITVLEITQNA 91

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
               +P         L   +   N  + ++P   A ++    LD+  NQLT  +PE  A 
Sbjct: 92  LI-SLPELPA----SLEYLDACDNRLS-TLPELPASLK---HLDVDNNQLT-MLPELPA- 140

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
               LE +   NN L   +       T+L  L +  N  +  +PE          L +S 
Sbjct: 141 ---LLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT-FLPELPESLEA---LDVST 189

Query: 226 NHLSGEIPRWLGNLSFLVDIIMP----NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP 281
           N L   +P          +  +      N +  + P     L     + L +N +  +  
Sbjct: 190 NLLE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPL-SSRI 246

Query: 282 SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN-RIDRLPQLSYL 340
                    Q      +I   +     ++ +    D        +  +          + 
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

Query: 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCG 400
             AN +       +L      +        ++  +     +  L +      A  + SC 
Sbjct: 307 EHANTFS--AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCE 364

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 19/193 (9%)

Query: 50  ANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH 109
           A+L HL++       L E    LE +   NN L     +P      L  L V NN     
Sbjct: 120 ASLKHLDVDNNQLTMLPELPALLEYINADNNQLT---MLP-ELPTSLEVLSVRNNQLT-F 174

Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQML----ARLDISYNQLTGEIPERMAT 165
           +P         L   ++S N    S+P+                   N++T  IPE +  
Sbjct: 175 LPELPE----SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL- 227

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGL---Y 222
                  + L +N L   I       T           FS    +  +  R L      +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 223 LSDNHLSGEIPRW 235
             +N  S     W
Sbjct: 288 FPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
           D   N+L+  +P     L     L++ +N LT  +P   + L   E ++   N L   +P
Sbjct: 106 DACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---EYINADNNQLT-MLP 156

Query: 531 SQLTVLTTL 539
              T L  L
Sbjct: 157 ELPTSLEVL 165

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            L+   L+  +P  +    +I  L ++ N L  ++P   ++L   E LD   N L   +P
Sbjct: 65  QLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLP 116

Query: 531 SQLTVLTTL 539
                L  L
Sbjct: 117 ELPASLKHL 125

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 471 DLSCNKLTGEIPTQIGYLTK----IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526
           D+S N L   +P                    N +T  IP    +L    ++ L  N L 
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

Query: 527 GKIPSQLTVLTTL 539
            +I   L+  T  
Sbjct: 244 SRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           I+   N+LT  +P     L     L++ +N LT  +P    +L+    LD+S NLL   +
Sbjct: 145 INADNNQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEA---LDVSTNLLES-L 195

Query: 530 PSQLTVLTTL 539
           P+        
Sbjct: 196 PAVPVRNHHS 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 10/76 (13%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIES----LDLSYNLLH 526
            +  N+LT  +P     L     L++S N L  ++P         E          N + 
Sbjct: 166 SVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 527 GKIPSQLTVLTTLAVF 542
             IP  +  L      
Sbjct: 221 -HIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
                    + N+    +      + +   L L+  NL+ ++P       QI  L+++ N
Sbjct: 36  WEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN 90

Query: 524 LLHGKIPSQLTVLTTLAV 541
            L   +P     L  L  
Sbjct: 91  ALI-SLPELPASLEYLDA 107

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 8e-22
 Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 30/283 (10%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQ 154
           + +LD+SNN    +I          L    L+ N  N +I   SF+ +  L  LD+SYN 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 155 LTGEIPERMATGCFSLEILALSNNSLQ----GHIFSKKFSLTNLMTLQLDGNNFSGEIPE 210
           L+  +         SL  L L  N  +      +FS    LT L  L++   +   +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH---LTKLQILRVGNMDTFTKIQR 167

Query: 211 -SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRIL 269
              +    L  L +  + L    P+ L ++  +  +I+       L+ I       +  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 270 DLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
           +L +  +                    +++     + +        + ++   L   +  
Sbjct: 228 ELRDTDL---------------DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNL 371
            ++++  L  L  + N ++  +P  +   L  +Q I L  N  
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 26/260 (10%)

Query: 134 SIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKF 189
           SIPS     ++    LD+S N++T  I       C +L+ L L++N   +++   FS   
Sbjct: 45  SIPSGLTEAVK---SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-- 98

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP--RWLGNLSFLVDIIM 247
            L +L  L L  N  S            L  L L  N     +       +L+ L  + +
Sbjct: 99  -LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156

Query: 248 PNNNLEGLIPIE-FCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLES 305
            N +    I  + F  L FL  L++  + +    P        +  + L   +    LE 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 306 VIPDSPNLVTLDLSYNCLHGSIPNRI--------DRLPQLSYLLLANNYIEGEIPVQLCQ 357
            +  + ++  L+L    L     + +         +      + + +  +  ++   L Q
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275

Query: 358 LKEVQLIDLSHNNLSGHIPP 377
           +  +  ++ S N L   +P 
Sbjct: 276 ISGLLELEFSRNQLKS-VPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 34/283 (12%)

Query: 50  ANLSHLNLSG----EFPNWLVENNTNLETLLLANNSLF----GSFRMPIHSHQKLATLDV 101
             +  L+LS        N  ++   NL+ L+L +N +      SF     S   L  LD+
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLDL 107

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP--SSFADMQMLARLDISYNQLTGEI 159
           S N+   ++       L  L   NL  N +  ++   S F+ +  L  L +       +I
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 160 PERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRL 218
             +   G   LE L +  + LQ     K   S+ N+  L L        +   +     +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 219 GGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG 278
             L L D  L                     + L         +    R + +++ ++F 
Sbjct: 225 ECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYN 321
            +      + + ++  S+N+++   + +     +L  + L  N
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 54/262 (20%), Positives = 94/262 (35%), Gaps = 36/262 (13%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSG----EFPNWLVENNTNLE 73
            L ++ L+      I+  +F         L +  L HL+LS        +   +  ++L 
Sbjct: 77  NLQALVLTSNGINTIEEDSF-------SSLGS--LEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 74  TLLLANNSLFGSFRMPIHSHQ-KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132
            L L  N         + SH  KL  L V N      I  +    L  L E  +  +   
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 133 GSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT 192
              P S   +Q ++ L +   Q    + E       S+E L L +  L        F  +
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT------FHFS 240

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
            L T + +          SL K      + ++D  L  ++ + L  +S L+++    N L
Sbjct: 241 ELSTGETN----------SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 253 EGLIPIEFCQLRFLRILDLSNN 274
           + +    F +L  L+ + L  N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           +  ++  +DLS N++T    + +     + AL L+ N +      +FS+L  +E LDLSY
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 523 NLLHGKIPSQ----LTVLTTL 539
           N L   + S     L+ LT L
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFL 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             +   + ++   L  ++   +  ++ +  L  S N L       F  L  ++ + L  N
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 524 LLH 526
              
Sbjct: 312 PWD 314

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 24/240 (10%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
              L++  N  Q  I V    +L  L    LSRN        +F  +  L  L++  N+L
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 156 TGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-S 211
           T  IP         L+ L L NN   S+  + F+    + +L  L L        I E +
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEGA 180

Query: 212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDL 271
                 L  L L+  +L  EIP  L  L  L ++ +  N+L  + P  F  L  L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 272 SNNTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
             + I       F  L S      + +++L+ N +      +     +L  + L +N  +
Sbjct: 239 IQSQIQVIERNAFDNLQS------LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 9/241 (3%)

Query: 134 SIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-L 191
            +P     + +    L++  NQ+   I          LEIL LS N ++  I    F+ L
Sbjct: 57  EVPDGISTNTR---LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGL 111

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
            NL TL+L  N  +     +     +L  L+L +N +          +  L  + +    
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 252 -LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS 310
            L  +    F  L  LR L+L+   +   +P+      ++++ LS N +           
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
            +L  L +  + +     N  D L  L  + LA+N +          L  ++ I L HN 
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 371 L 371
            
Sbjct: 291 W 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 66/264 (25%), Positives = 102/264 (38%), Gaps = 26/264 (9%)

Query: 44  QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATL 99
            +          NL  E P+ +   +TN   L L  N +      SF       + L  L
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSF----KHLRHLEIL 93

Query: 100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQLTGE 158
            +S N  +  I +     L  L    L  N    +IP+ +F  +  L  L +  N +   
Sbjct: 94  QLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 159 IPERMATGCFSLEILALSNN----SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
           IP        SL  L L        +    F     L+NL  L L   N   EIP +L+ 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG---LSNLRYLNLAMCNLR-EIP-NLTP 205

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
             +L  L LS NHLS   P     L  L  + M  + ++ +    F  L+ L  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 275 TIFGTLPSCFSP-AYIEQVHLSKN 297
            +       F+P  ++E++HL  N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 3e-18
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 19/278 (6%)

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
            G   + + + L  L+   ++      + PS  +     +++      L  E+P+ ++T 
Sbjct: 7   PGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLR-EVPDGIST- 64

Query: 167 CFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
             +  +L L  N +Q  I    F  L +L  LQL  N+       + +    L  L L D
Sbjct: 65  --NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS-CF 284
           N L+         LS L ++ + NN +E +    F ++  LR LDL        +    F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 285 SP-AYIEQVHLSKNKIEGRLESVIPD---SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYL 340
              + +  ++L+   +       IP+      L  LDLS N L    P     L  L  L
Sbjct: 182 EGLSNLRYLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 341 LLANNYIEGEIPVQ-LCQLKEVQLIDLSHNNLSGHIPP 377
            +  + I+  I       L+ +  I+L+HNNL+  +P 
Sbjct: 237 WMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           ++L  N++         +L  +  L LS N++       F+ L  + +L+L  N L   I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 530 PSQ----LTVLTTL 539
           P+     L+ L  L
Sbjct: 128 PNGAFVYLSKLKEL 141

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L  +  + LS N +   I       L  ++ L L  N LT      F  L +++ L L  
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 523 NLL---HGKIPSQLTVLTTL 539
           N +        +++  L  L
Sbjct: 146 NPIESIPSYAFNRIPSLRRL 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  +DLS N L+   P     L  +  L +  + +       F NL+ +  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 524 LLH---GKIPSQLTVLTTL 539
            L      + + L  L  +
Sbjct: 266 NLTLLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 528
            L  N +   IP+     +  +  L+L        I    F  L  +  L+L+   L  +
Sbjct: 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199

Query: 529 IP--SQLTVLTTL 539
           IP  + L  L  L
Sbjct: 200 IPNLTPLIKLDEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 464 LTSMFGIDLS-CNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           + S+  +DL    +L+  I       L+ +  LNL+  NL   IP   + L +++ LDLS
Sbjct: 159 IPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLS 215

Query: 522 YNLLHGKIPSQ----LTVLTTL 539
            N L   I       L  L  L
Sbjct: 216 GNHLS-AIRPGSFQGLMHLQKL 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 59/260 (22%), Positives = 91/260 (35%), Gaps = 24/260 (9%)

Query: 98  TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLT- 156
            +  ++      +P  I           L  N         F  +  L +L +S N L+ 
Sbjct: 11  EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 157 GEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES--LSK 214
                +   G  SL+ L LS N +   + S    L  L  L    +N   ++ E      
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 124

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN-LEGLIPIEFCQLRFLRILDLSN 273
            R L  L +S  H           LS L  + M  N+  E  +P  F +LR L  LDLS 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 274 NTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS 326
             +       F +L S      ++ +++S N              +L  LD S N +  S
Sbjct: 185 CQLEQLSPTAFNSLSS------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 327 IPNRIDRLP-QLSYLLLANN 345
               +   P  L++L L  N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 12/236 (5%)

Query: 145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ-GHIFSKKFS-LTNLMTLQLDGN 202
             RL++  N+L   +P  +      L  L+LS+N L      S+     T+L  L L  N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR--WLGNLSFLVDIIMPNNNLEGLIPIEF 260
                +  +     +L  L    ++L  ++       +L  L+ + + + +        F
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 261 CQLRFLRILDLSNNTIFGTLPS-CFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318
             L  L +L ++ N+         F+    +  + LS+ ++E    +      +L  L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ--LKEVQLIDLSHNNLS 372
           S+N            L  L  L  + N+I      Q  Q     +  ++L+ N+ +
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 51  NLSHLNLSG------EFPNWLVENNTNLETLLLANNSLF---GSFRMPIHSHQKLATLDV 101
            L+ L+LS          +      T+L+ L L+ N +     +F       ++L  LD 
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDF 108

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
            ++  +      +   L  L+  ++S      +    F  +  L  L ++ N        
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 162 RMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRL 218
            + T   +L  L LS      L    F+   SL++L  L +  NNF             L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 219 GGLYLSDNHLSGEIPRWLGNL-SFLVDIIMPNNNL 252
             L  S NH+     + L +  S L  + +  N+ 
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 196 TLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE-- 253
            ++ +    +  +P  +        L L  N L          L+ L  + + +N L   
Sbjct: 11  EIRCNSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 254 GLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLE-SVIPDSP 311
           G           L+ LDLS N +  T+ S F     +E +    + ++   E SV     
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 312 NLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLA-NNYIEGEIPVQLCQLKEVQLIDLSHN 369
           NL+ LD+S+        N I + L  L  L +A N++ E  +P    +L+ +  +DLS  
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 370 NLSGHIPP 377
            L   + P
Sbjct: 186 QLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH--- 526
           DLS  +L  ++       L+ +  LN+SHNN        +  L  ++ LD S N +    
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 527 ----GKIPSQLTVL 536
                  PS L  L
Sbjct: 240 KQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 464 LTSMFGIDLSCNKLT--GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           LT +  + LS N L+  G         T +  L+LS N +  T+ + F  L+Q+E LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 522 YNLLHGKIPSQ-----LTVLTTL 539
           ++ L  ++        L  L  L
Sbjct: 110 HSNLK-QMSEFSVFLSLRNLIYL 131

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT--GTIPTTFSNLKQIESLDL 520
           I +S   ++L  NKL          LT++  L+LS N L+  G    +      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 521 SYNLLHGKIPSQLTVLTTL 539
           S+N +   + S    L  L
Sbjct: 86  SFNGVI-TMSSNFLGLEQL 103

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
           I  +   LT  +PT I   +    L L  N L       F  L Q+  L LS N L
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 62/292 (21%), Positives = 101/292 (34%), Gaps = 37/292 (12%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDV 101
           DL+N ++S L    +F         +L  L+L NN +      +F       +KL  L +
Sbjct: 60  DLQNNDISELR-KDDFKGL-----QHLYALVLVNNKISKIHEKAFS----PLRKLQKLYI 109

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE 161
           S N     IP  +      L+E  +  N         F+ ++ +  +++  N L     E
Sbjct: 110 SKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-SLSKCRRLGG 220
             A     L  L +S   L   I         L  L LD N     I    L +  +L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYR 221

Query: 221 LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI---- 276
           L L  N +       L  L  L ++ + NN L   +P     L+ L+++ L  N I    
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 277 ---FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS----PNLVTLDLSYN 321
              F  +      AY   + L  N +      V P +     + + +     
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVP--YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 8e-21
 Identities = 55/291 (18%), Positives = 100/291 (34%), Gaps = 29/291 (9%)

Query: 70  TNLETLLLANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125
            +   L L NN +       F       Q L  L + NN     I  +  + L  L +  
Sbjct: 54  PDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108

Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIF 185
           +S+N      P+  +    L  L I  N++  ++P+ + +G  ++  + +  N L+   F
Sbjct: 109 ISKNHLVEIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 186 SKK-FSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRW-LGNLSFLV 243
               F    L  L++     +  IP+ L     L  L+L  N +   I    L   S L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLY 220

Query: 244 DIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEG- 301
            + + +N +  +       L  LR L L NN +   +P+       ++ V+L  N I   
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 302 -----RLESVIPDSPNLVTLDLSYNCL-HGSIPNRI-DRLPQLSYLLLANN 345
                              + L  N + +  +       +     +   N 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 57/302 (18%), Positives = 101/302 (33%), Gaps = 43/302 (14%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
           L  +  S+   +  +P EI    P     +L  N  +      F  +Q L  L +  N++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 156 TGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
           + +I E+  +    L+ L +S N    +  ++ S      +L+ L++  N          
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 213 SKCRRLGGLYLSDNHLSGEI--PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
           S  R +  + +  N L      P     L  L  + +    L G+          L  L 
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNELH 199

Query: 271 LSNNTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323
           L +N I                   + ++ L  N+I       +   P L  L L  N L
Sbjct: 200 LDHNKIQAIELEDLLRYSK------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-------LCQLKEVQLIDLSHNNLS-GHI 375
              +P  +  L  L  + L  N I  ++ V          +      I L +N +    +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 376 PP 377
            P
Sbjct: 312 QP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
            L  NK+   I  +     +K++ L L HN +      + S L  +  L L  N L  ++
Sbjct: 199 HLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 530 PSQLTVLTTL 539
           P+ L  L  L
Sbjct: 257 PAGLPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL---H 526
           +DL  N ++         L  ++AL L +N ++      FS L++++ L +S N L    
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118

Query: 527 GKIPSQLTVL 536
             +PS L  L
Sbjct: 119 PNLPSSLVEL 128

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
            + ++ + L  N++       + +L  +  L+L +N L+  +P    +LK ++ + L  N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 524 LL 525
            +
Sbjct: 275 NI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL---H 526
           + +S  KLT  IP  +     ++ L+L HN +            ++  L L +N +    
Sbjct: 177 LRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233

Query: 527 GKIPSQLTVLTTL 539
               S L  L  L
Sbjct: 234 NGSLSFLPTLREL 246

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 64/261 (24%), Positives = 86/261 (32%), Gaps = 41/261 (15%)

Query: 92  SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDIS 151
            ++   T        Q  +PV I      +    L  N  +    +SF   + L  L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLH 64

Query: 152 YNQLTGEIPERMATGCFSLEILALSNN----SLQGHIFSKKFSLTNLMTLQLDGNNFSGE 207
            N L   I     TG   LE L LS+N    S+    F     L  L TL LD      E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-E 119

Query: 208 IPE-SLSKCRRLGGLYLSDNHLSGEIP-RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF 265
           +          L  LYL DN L   +P     +L  L  + +  N +  +    F  L  
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG 325
           L  L L  N +    P  F                        D   L+TL L  N L  
Sbjct: 179 LDRLLLHQNRVAHVHPHAFR-----------------------DLGRLMTLYLFANNLS- 214

Query: 326 SIPNRI-DRLPQLSYLLLANN 345
           ++P      L  L YL L +N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 57/231 (24%), Positives = 85/231 (36%), Gaps = 35/231 (15%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
            L    +SH+  +  F         NL  L L +N L                  +    
Sbjct: 38  FLHGNRISHVP-AASFRA-----CRNLTILWLHSNVL----------------ARIDAAA 75

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMA 164
           F G         L  L + +LS NA   S+  + F  +  L  L +    L  E+   + 
Sbjct: 76  FTG---------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLF 125

Query: 165 TGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223
            G  +L+ L L +N+LQ  +    F  L NL  L L GN  S     +      L  L L
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
             N ++   P    +L  L+ + +  NNL  L       LR L+ L L++N
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 48/200 (24%), Positives = 70/200 (35%), Gaps = 27/200 (13%)

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
                + L GN  S     S   CR L  L+L  N L+         L+ L  + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 252 LEGLIPIE-FCQLRFLRILDLSNNTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRL 303
               +    F  L  L  L L    +       F  L +      ++ ++L  N +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------LQYLYLQDNAL---- 141

Query: 304 ESVIPDS-----PNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQ 357
              +PD       NL  L L  N +  S+P R    L  L  LLL  N +    P     
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 358 LKEVQLIDLSHNNLSGHIPP 377
           L  +  + L  NNLS  +P 
Sbjct: 200 LGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 41/194 (21%), Positives = 60/194 (30%), Gaps = 24/194 (12%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLL 77
            LT + L       ID   F         L+  +LS                  L TL L
Sbjct: 57  NLTILWLHSNVLARIDAAAF----TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 78  ANNSLF----GSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
               L     G FR        L  L + +N  Q  +P +    L  L    L  N  + 
Sbjct: 113 DRCGLQELGPGLFR----GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFS 190
               +F  +  L RL +  N++   +          L  L L  N   +L     +    
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALA---P 223

Query: 191 LTNLMTLQLDGNNF 204
           L  L  L+L+ N +
Sbjct: 224 LRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 43/168 (25%)

Query: 22  QLTSISLSG----YIDGGTFPKFLYHQHDLKNANLSHLNLSG----EFPNWLVENNTNLE 73
           +L ++ L       +  G F         L    L +L L        P+    +  NL 
Sbjct: 106 RLHTLHLDRCGLQELGPGLF-------RGLAA--LQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 74  TLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
            L L  N +                  V    F+G         L  L    L +N    
Sbjct: 157 HLFLHGNRI----------------SSVPERAFRG---------LHSLDRLLLHQNRVAH 191

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181
             P +F D+  L  L +  N L+  +P        +L+ L L++N   
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           I L  N+++            +  L L  N L       F+ L  +E LDLS N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 530 P----SQLTVLTTL 539
                  L  L TL
Sbjct: 97  DPATFHGLGRLHTL 110

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L ++  + L  N L   +P      L  +  L L  N ++      F  L  ++ L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 523 NLLHGKIPSQ----LTVLTTL 539
           N +   +       L  L TL
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L ++  + L  N+++  +P +    L  +  L L  N +    P  F +L ++ +L L  
Sbjct: 152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N L   +P    + L  L  L
Sbjct: 211 NNLS-ALPTEALAPLRALQYL 230

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 68/369 (18%), Positives = 131/369 (35%), Gaps = 23/369 (6%)

Query: 22  QLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE-NNTNLETLLLAN 79
           QL  + LS  +++  +     +         L       E P  L + N  +L  +   N
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 80  NSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPV---EIGTYLPGLMEFNLSRNAFNGSIP 136
                   + + +   L   ++               +          NL+ N    +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 137 SSFADMQM-----LARLDISYNQLTGEIPERMATGCF----SLEILALSNNSLQGHIFSK 187
           S    +Q+     +    IS  +L G++  R          +L I  + ++         
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM 247
               +N+       +          SK      L  S+N L+  +    G+L+ L  +I+
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 248 PNNNLEGLIPIE--FCQLRFLRILDLSNNTIFGTLP--SCFSPAYIEQVHLSKNKIEGRL 303
             N L+ L  I     Q++ L+ LD+S N++        C     +  +++S N +   +
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQ 362
              +P  P +  LDL  N +  SIP ++ +L  L  L +A+N ++  +P  +   L  +Q
Sbjct: 416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 363 LIDLSHNNL 371
            I L  N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 77/457 (16%), Positives = 136/457 (29%), Gaps = 52/457 (11%)

Query: 98  TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG 157
            +D S N    H+P ++      L   N+S+N  +    S    +  L  L IS+N++  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQKTTIL---NISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 158 EIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNF-SGEIPESLSKCR 216
            +   +      LE L LS+N L            NL  L L  N F +  I +      
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI 276
           +L  L LS  HL       + +L+    +++           +   L+      L     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFP 173

Query: 277 FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQ 336
                          + +S   +     S I             + L     N       
Sbjct: 174 TNKEFHFI-------LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226

Query: 337 LSYL-LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPT 395
           L+ +    N++I     V    +    + ++               TSL       V   
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 396 SSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI-QFTTKN 454
                ++  Y         N                    G+R   M     I  F   +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKN----------------FTVSGTRMVHMLCPSKISPFLHLD 330

Query: 455 MSYYYQGRILTSMFG-------IDLSCNKLTGEIPTQIGY---LTKIHALNLSHNNLTGT 504
            S       +    G       + L  N+L  E+         +  +  L++S N+++  
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 505 IPT-TFSNLKQIESLDLSYNLLH----GKIPSQLTVL 536
                 S  K + SL++S N+L       +P ++ VL
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 67/354 (18%), Positives = 123/354 (34%), Gaps = 34/354 (9%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  L +S          + + N  LE L L++N L     +  H    L  LD+S N F
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAF 102

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
                 +    +  L    LS      S     A + +   L +       +        
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 167 CF--SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN------NFSGEIPESLSKCRRL 218
               SL I+  +N      +     ++ NL    +         ++   I   L    +L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 219 GGLYLSDNHLSGEIPRWLGNL---SFLVDIIMPNNNLEGLIPIE-----FCQLRFLRILD 270
             L L++   +      +  L   + +    + N  L+G +           L+ L I  
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 271 LSNNTIFGTLPSC----FSPAYIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHG 325
           + ++ +FG   S     FS   I+   +S  ++   +  + P      + LD S N L  
Sbjct: 283 VVSD-VFGFPQSYIYEIFSNMNIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTD 338

Query: 326 SIPNRIDRLPQLSYLLLANNYIE--GEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
           ++      L +L  L+L  N ++   +I     Q+K +Q +D+S N++S     
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 52/350 (14%), Positives = 107/350 (30%), Gaps = 34/350 (9%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL-FGSFRMPIHSHQKLATLDVSNN 104
           DL       L +  EF N      + L+ L L+   L   S     H +     L +   
Sbjct: 96  DLSFNAFDALPICKEFGNM-----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA 164
           +       E    L      +L              D+ +    ++  + +   + +   
Sbjct: 151 Y----GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 165 TGCFS----------LEILALSNNSLQGHIFSKKFSLTNLMTL--------QLDGNNFSG 206
           +   S          L  L L+N     + F +   L    T+        +L G     
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL 266
           +   S +  + L    +  +             S +       +    +  +   ++   
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 267 RILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIE--GRLESVIPDSPNLVTLDLSYNCL 323
             LD SNN +  T+         +E + L  N+++   ++  +     +L  LD+S N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 324 HGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
                         L  L +++N +   I   L     ++++DL  N + 
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.1 bits (187), Expect = 8e-15
 Identities = 69/400 (17%), Positives = 126/400 (31%), Gaps = 33/400 (8%)

Query: 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSG 206
           +D S N L   +P+ ++       IL +S N +   +++    SL+ L  L +  N    
Sbjct: 5   VDRSKNGLI-HVPKDLSQ---KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY 59

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRF 265
                    + L  L LS N L         NL  L    +  N  + L I  EF  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQ 116

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLH 324
           L+ L LS   +     S    A++    +     E   E   P+   +  T  L      
Sbjct: 117 LKFLGLSTTHL--EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 325 GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL 384
               + I  +   +   L  + I+  +    C      L  L  N       P L N +L
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN-------PKLSNLTL 227

Query: 385 SEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGK 444
           +       +               ++ + +                +L  +         
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL--------S 279

Query: 445 EETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT 504
              +          Y   I ++M   + + +            ++    L+ S+N LT T
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 505 IPTTFSNLKQIESLDLSYNLL-----HGKIPSQLTVLTTL 539
           +     +L ++E+L L  N L       ++ +Q+  L  L
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSY 522
              +  +DLS NKL  +I         +  L+LS N      I   F N+ Q++ L LS 
Sbjct: 68  NQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 523 NLLHGKIPSQLTVLTTLAVF 542
             L       +  L    V 
Sbjct: 125 THLEKSSVLPIAHLNISKVL 144

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 58/301 (19%), Positives = 83/301 (27%), Gaps = 44/301 (14%)

Query: 65  LVENNTNLETLLLANNSLFGSFRMPIHSHQ-KLATLDVSNNFFQGHIPVEIGTYL--PGL 121
           L     +LE LL   ++     +         L  L V        I       L   GL
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 122 MEFNLSRNAFNGSIPSSFADMQM--LARLDISYNQLTGEIPERMATGCF---SLEILALS 176
            E  L      G+ P    +     L  L++                 +    L++L+++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC----RRLGGLYLSDNH---LS 229
                     +      L TL L  N   GE     + C      L  L L +      S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ-LRFLRILDLSNNTIFGTLPSCFSPAY 288
           G           L  + + +N+L        C     L  L+LS   +   +P       
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA-- 274

Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348
                                   L  LDLSYN L    P   D LPQ+  L L  N   
Sbjct: 275 -----------------------KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFL 309

Query: 349 G 349
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 33/252 (13%)

Query: 46  DLKNANLSHLNLSGEFPNWLVE--NNTNLETLLLANNSLFGSFRMPIH--SHQKLATLDV 101
            LK   +    +        +     + L+ L L N  + G+   P+   +   L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 102 SNNFFQG---HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE 158
            N  +      +        PGL   ++++                L+ LD+S N   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 159 IPERMATGCF----SLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES 211
               ++  C     +L++LAL N    +  G   +   +   L  L L  N+        
Sbjct: 189 RGL-ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 212 L-SKCRRLGGLYLSDNHLSGEIPRWLG------NLSFLVDIIMPNNNLEGLIPIEFCQLR 264
                 +L  L LS   L  ++P+ L       +LS         N L+     +  +L 
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLS--------YNRLDRNPSPD--ELP 296

Query: 265 FLRILDLSNNTI 276
            +  L L  N  
Sbjct: 297 QVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 41/214 (19%), Positives = 63/214 (29%), Gaps = 11/214 (5%)

Query: 23  LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL 82
           L ++ ++G              + L   N+S                  L+ L +A    
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 83  FGSFRMPIHSHQKLATLDVSNNFFQGHIPVE---IGTYLPGLMEFNLSRNAFN---GSIP 136
                  +     L+TLD+S+N   G   +         P L    L         G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 137 SSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT 196
           +  A    L  LD+S+N L              L  L LS   L+  +     +   L  
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSV 278

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG 230
           L L  N      P S  +  ++G L L  N    
Sbjct: 279 LDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 41/246 (16%), Positives = 73/246 (29%), Gaps = 22/246 (8%)

Query: 154 QLTGEIPERMATGCFSLEI-LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
              G     +  G  SLE  L   +       F+      +L  L +        I    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 213 SK---CRRLGGLYLSDNHLSGEIPRWLGNLSF--LVDIIMPNNNLEGLIP----IEFCQL 263
            +      L  L L +  ++G  P  L   +   L  + + N +          ++    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 264 RFLRILDLSNNTIFGTLPSCFSPAY--IEQVHLSKNKIEGRL---ESVIPDS-PNLVTLD 317
             L++L ++               +  +  + LS N   G      ++ P   P L  L 
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 318 LSYN---CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLSG 373
           L         G          QL  L L++N +        C    ++  ++LS   L  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266

Query: 374 HIPPCL 379
            +P  L
Sbjct: 267 QVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 460 QGRILTSMFGIDLSCNKLTGEIP----TQIGYLTKIHALNLSHNNLT---GTIPTTFSNL 512
           Q R+  ++  +DLS N   GE              +  L L +  +    G      +  
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 513 KQIESLDLSYNLLHGKIPSQL 533
            Q++ LDLS+N L     +  
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK- 528
           DLS N L          + +++++LNLS   L        + L     LDLSYN L    
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRNP 290

Query: 529 IPSQLTVLTTL 539
            P +L  +  L
Sbjct: 291 SPDELPQVGNL 301

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 68/368 (18%), Positives = 119/368 (32%), Gaps = 25/368 (6%)

Query: 22  QLTSISLSG-YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
           +LT + LS             +        +L   ++ G     L   NT +  L+   N
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 81  SLFGSFRMPIHSHQKLATLDV--SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS 138
           SLF        +      L     N+     +   +     G    N++      +   S
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 139 FADMQM-----LARLDISYNQLTGEIPERMATGCF----SLEILALSNNSLQGHIFSKKF 189
               Q      +  L+I    +T  I     T       SL I  + N        +   
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
               +    L  ++                 L  + N  +  + +    L  L  +I+  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 250 NNLEGLIPI--EFCQLRFLRILDLSNNTI----FGTLPSCFSPAYIEQVHLSKNKIEGRL 303
           N L+    +      +  L  LD+S N++    +     C     I  ++LS N + G +
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWAESILVLNLSSNMLTGSV 444

Query: 304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPV-QLCQLKEVQ 362
              +P  P +  LDL  N +  SIP  +  L  L  L +A+N ++  +P     +L  +Q
Sbjct: 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500

Query: 363 LIDLSHNN 370
            I L  N 
Sbjct: 501 YIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 64/353 (18%), Positives = 117/353 (33%), Gaps = 26/353 (7%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  L LS          +   N +LE L +++N L     +       L  LD+S N F
Sbjct: 77  ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDF 133

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ-MLARLDISYNQLTGEIPERMAT 165
                 +    L  L    LS   F        A +      LD+    + G   E +  
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 166 GCFSLEILALSNNSLQGHIFS---KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLY 222
              ++  L    NSL     +          L  ++L+  N    +       R    L 
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253

Query: 223 LSDNHLSGEIPRWLGNLSF-----LVDIIMPNNNLEGLIP-----IEFCQLRFLRILDLS 272
           ++  H+       +    F     +  + + N  +   I           L+ L I  + 
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 273 NNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHGSIPNR 330
           N     +  + +S  A +    LS +     +  V P SP +   L+ + N    S+   
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 331 IDRLPQLSYLLLANNYIE--GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN 381
              L +L  L+L  N ++   ++ +    +  ++ +D+S N+L+ H       
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 13/236 (5%)

Query: 21  FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN 80
             + +++++  ID   F         L   ++ +          L      +   +L+ +
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSIS 339

Query: 81  SLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSF- 139
                  +   S      L+ + N F      +  + L  L    L RN    +      
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397

Query: 140 --ADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT-NLMT 196
              +M  L  LD+S N L     +R      S+ +L LS+N L G +F     L   +  
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKV 454

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR-WLGNLSFLVDIIMPNNN 251
           L L  N     IP+ ++  + L  L ++ N L   +P      L+ L  I + +N 
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 65/384 (16%), Positives = 117/384 (30%), Gaps = 41/384 (10%)

Query: 169 SLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL-SKCRRLGGLYLS 224
             + L+LS N    L+    S    L+ L  L+L  N     +   +    + L  L +S
Sbjct: 53  RTKALSLSQNSISELRMPDIS---FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108

Query: 225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNNTIFGTLPSC 283
            N L   I      ++ L  + +  N+ + L +  EF  L  L  L LS           
Sbjct: 109 HNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-----RQ 160

Query: 284 FSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLA 343
                +  +HLS   ++      I           +   LH         L      L +
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYH-IKGGETESLQIPNTTVLH---------LVFHPNSLFS 210

Query: 344 NNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRAS 403
                    +   QL  ++L D +   L   +       +L     + +  T     +  
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--- 460
            +        LN      +          ++  S T    K   I+     +  + +   
Sbjct: 271 QFFWPRPVEYLN----IYNLTITERIDREEFTYSETAL--KSLMIEHVKNQVFLFSKEAL 324

Query: 461 GRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDL 520
             +   M    LS +             +    LN + N  T ++    S LK++++L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 521 SYNLL-----HGKIPSQLTVLTTL 539
             N L        +   ++ L TL
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETL 408

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 64/439 (14%), Positives = 141/439 (32%), Gaps = 45/439 (10%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
           +LS+N+ +       + +  L  L +S+N++   +   +      LE L +S+N LQ   
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 185 FSKKFSLTNLMTLQLDGNNFSGEIPES--LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL 242
                 + +L  L L  N+F   +P         +L  L LS           + +L   
Sbjct: 117 CCP---MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 243 VDII-MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEG 301
             ++ + + +++G             +  + +     ++    S   +  + LS  K+  
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV 361
                +    + +T   +   +                       ++         ++ +
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIE-----------TTWKCSVKLFQFFWPRPVEYL 281

Query: 362 QLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYAS----SYTKTALNAT 417
            + +L+              T+L     E V        + + Y+     +    +++ T
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 418 TPFSSSCGRGYPYALDYVG------SRTPPMGKEETIQFTTKNMSY------YYQGRILT 465
                 C    P +  ++       + +   G     +  T  +        +    +  
Sbjct: 342 PFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 466 SMFGIDLSCNKLT----GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL-KQIESLDL 520
           +M  ++     L             +   I  LNLS N LTG++   F  L  +++ LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDL 457

Query: 521 SYNLLHGKIPSQLTVLTTL 539
             N +   IP  +T L  L
Sbjct: 458 HNNRIM-SIPKDVTHLQAL 475

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           +      + LS N ++      I +L+++  L LSHN +       F   + +E LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 523 NLLHGKIPSQ-LTVLTTL 539
           N L   I    +  L  L
Sbjct: 110 NRLQ-NISCCPMASLRHL 126

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 55/332 (16%), Positives = 103/332 (31%), Gaps = 47/332 (14%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
             +   +   +         E    L +L   N+S+  +    I     L  L  ++N  
Sbjct: 20  FASEVAAAFEMQA-TDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI 76

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
              + +   +    L       N    ++      +  L  L+   N+LT ++     + 
Sbjct: 77  T-TLDL---SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDV---SQ 125

Query: 167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
              L  L  + N+L     S     T L  L    N    ++   ++   +L  L  S N
Sbjct: 126 NPLLTYLNCARNTLTEIDVSH---NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI----FGTLPS 282
            ++ E+   +     L  +    NN+  L   +  Q   L  LD S+N +       L  
Sbjct: 181 KIT-ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTPLTQ 234

Query: 283 CFSPAYIEQVHLSKNKIEGRLESVIPDS--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYL 340
                 +     S N +     + +  S    L TL      L   I   +    QL Y 
Sbjct: 235 ------LTYFDCSVNPL-----TELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYF 280

Query: 341 LLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
                    E+   +    ++ L+D     ++
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 57/341 (16%)

Query: 48  KNANLSHLNLSGEFPNWL----VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103
               L++LN      N L    V  N  L  L  A N+L     + +  + +L  LD   
Sbjct: 104 PLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHL 157

Query: 104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERM 163
           N     + V   T    L   + S N          +  ++L RL+   N +T ++    
Sbjct: 158 NKKITKLDV---TPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--- 207

Query: 164 ATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223
                 L  L  S+N L     +    LT L       N  + E+   +S   +L  L+ 
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDVTP---LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHC 261

Query: 224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI----FGT 279
               L  EI   L + + L+           +  ++      L +LD     I       
Sbjct: 262 IQTDLL-EID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQ 316

Query: 280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDS--PNLVTLDLSYNCLHGSIPNRIDRLPQL 337
            P       +  ++L+  ++     + +  S    L +L      +     + + ++P L
Sbjct: 317 NPK------LVYLYLNNTEL-----TELDVSHNTKLKSLSCVNAHI-QDFSS-VGKIPAL 363

Query: 338 SYLLLANNYIEGEIPVQLCQLKEV------QLIDLSHNNLS 372
           +    A       +P +      +       L+D   N ++
Sbjct: 364 NNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 181 QGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLS 240
           Q   F+  F   N  +              S  +   L  L   ++ ++ ++   +  L+
Sbjct: 7   QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLT 64

Query: 241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI----FGTLPSCFSPAYIEQVHLSK 296
            L  +I  +NN+     ++  Q   L  L   +N +       L        +  ++   
Sbjct: 65  GLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNLDVTPLTK------LTYLNCDT 115

Query: 297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLC 356
           NK+    +  +  +P L  L+ + N L   I   +    QL+ L    N    ++   + 
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VT 167

Query: 357 QLKEVQLIDLSHNNLS 372
              ++  +D S N ++
Sbjct: 168 PQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           +D   + +T    T I  LT +  L  + NN+T T+    S    +  L    N L    
Sbjct: 47  LDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLD 101

Query: 530 PSQLTVLTTL 539
            + LT LT L
Sbjct: 102 VTPLTKLTYL 111

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
              +  ++   N +T ++   +    ++  L+ S N LT  I    + L Q+   D S N
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

Query: 524 LLHGKIPSQLTVLTTL 539
            L     S L+ LTTL
Sbjct: 244 PLTELDVSTLSKLTTL 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LT +  +  + N +T  +   +   T +  L    N LT  +    + L ++  L+   N
Sbjct: 63  LTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTN 116

Query: 524 LLHGKIPSQLTVLTTL 539
            L     SQ  +LT L
Sbjct: 117 KLTKLDVSQNPLLTYL 132

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 24/225 (10%)

Query: 134 SIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKF 189
            IP +     +    LD+S+N L   +          L++L LS     +++   +    
Sbjct: 21  KIPDNLPFSTK---NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-- 74

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
            L++L TL L GN        + S    L  L   + +L+      +G+L  L ++ + +
Sbjct: 75  -LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 250 NNLEGLIPIE-FCQLRFLRILDLSNNTI-------FGTLPSCFSPAYIEQVHLSKNKIEG 301
           N ++     E F  L  L  LDLS+N I          L     P     + LS N +  
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNLSLDLSLNPMN- 190

Query: 302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
            ++        L  L L  N L  S+P+ I DRL  L  + L  N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 20/216 (9%)

Query: 70  TNLETLLLANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125
            + + L L+ N L      SF     S  +L  LD+S    Q  I       L  L    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82

Query: 126 LSRNAFNGSIPS-SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
           L+ N    S+   +F+ +  L +L      L   +         +L+ L +++N +Q   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 185 FSKKFS-LTNLMTLQLDGNNFSGEIPE----SLSKCRRLGG-LYLSDNHLSGEIPRWLGN 238
             + FS LTNL  L L  N     I       L +   L   L LS N ++  I      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 239 LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
              L ++ +  N L+ +    F +L  L+ + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 16/192 (8%)

Query: 68  NNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME 123
           +   L+ L L+   +     G++     S   L+TL ++ N  Q  + +   + L  L +
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 124 FNLSRNAFNGSIPS-SFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---S 179
                     S+ +     ++ L  L++++N +         +   +LE L LS+N   S
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 180 LQGHIFSKKFSLTNL-MTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGN 238
           +          +  L ++L L  N  +  I     K  RL  L L  N L          
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 239 LSFLVDIIMPNN 250
           L+ L  I +  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 30/203 (14%)

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP----RWLGNLSFLVDIIM 247
            +   L L  N        S      L  L LS   +   I     + L +LS L   I+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL---IL 83

Query: 248 PNNNLEGLIPIEFCQLRFLRILDLSNNTI-------FGTLPSCFSPAYIEQVHLSKNKI- 299
             N ++ L    F  L  L+ L      +        G L +      +++++++ N I 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------LKELNVAHNLIQ 137

Query: 300 EGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSY----LLLANNYIEGEIPVQ 354
             +L     +  NL  LDLS N +  SI       L Q+      L L+ N +   I   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 355 LCQLKEVQLIDLSHNNLSGHIPP 377
             +   ++ + L  N L   +P 
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 40/190 (21%), Positives = 65/190 (34%), Gaps = 22/190 (11%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVS 102
            L  L+LS        +   ++ ++L TL+L  N +     G+F         L  L   
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAV 108

Query: 103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIP 160
                  +      +L  L E N++ N    S      F+++  L  LD+S N++   I 
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

Query: 161 ERMATGCFSLEI----LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCR 216
                    + +    L LS N +   I    F    L  L LD N           +  
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 217 RLGGLYLSDN 226
            L  ++L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 521
           +  S   +DLS N L            ++  L+LS   +  TI    + +L  + +L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 522 YNLLH---GKIPSQLTVLTTL 539
            N +        S L+ L  L
Sbjct: 85  GNPIQSLALGAFSGLSSLQKL 105

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 471 DLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
            L+ N +   +       L+ +  L     NL         +LK ++ L++++NL+    
Sbjct: 82  ILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SF 139

Query: 530 P-----SQLTVLTTL 539
                 S LT L  L
Sbjct: 140 KLPEYFSNLTNLEHL 154

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 4e-16
 Identities = 55/351 (15%), Positives = 112/351 (31%), Gaps = 24/351 (6%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
               ++ NL +   + +   +  ++  + ++  + + +   +         ++  L L+ 
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
           N L   I     +L NL  L LD N    ++  SL   ++L  L L  N +S +I   L 
Sbjct: 75  NKLT-DIKPLT-NLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297
           +L  L  + + NN +  +  +   +L  L  L L +N I   +        ++ ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN 185

Query: 298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ 357
            I   L + +    NL  L+L          N    L   + +   +  +     +    
Sbjct: 186 HIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 358 LKEVQLIDLSHNNLSGH--------IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY 409
             E   +       +          +              +P+    +      G     
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKT 303

Query: 410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ 460
              A    T       +GY +   Y            T   +  + + Y  
Sbjct: 304 KVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAV 354

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 51  NLSHLNLSGEFPNWL-----VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
           ++  +  +    + +     ++   N+  L L  N L  +   P+ + + L  L +  N 
Sbjct: 44  SIDQIIANN---SDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDEN- 97

Query: 106 FQGHIP-VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA 164
               I  +     L  L   +L  N  +  I +    +  L  L +  N++T +I     
Sbjct: 98  ---KIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITVL-- 149

Query: 165 TGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS 224
           +    L+ L+L +N +          LT L  L L  N+ S ++  +L+  + L  L L 
Sbjct: 150 SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELF 205

Query: 225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF 284
                 +      NL     +   + +L     I           D     +   LP   
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVKWHLPEFT 258

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
           +                         P      +SY+     I  +++
Sbjct: 259 NEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVE 306

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 22/258 (8%)

Query: 98  TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG 157
                 +     IP ++       +E              +F+    L +++IS N +  
Sbjct: 13  VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 158 EIPERMATGCFSLEILALSNN----SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE-SL 212
            I   + +    L  + +        +    F     L NL  L +        +P+   
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN---LPNLQYLLISNTGIK-HLPDVHK 124

Query: 213 SKCRRLGGLYLSDNHLSGEIP-RWLGNLSF-LVDIIMPNNNLEGLIPIEFCQLRFLRILD 270
               +   L + DN     I       LSF  V + +  N ++ +    F   +   +  
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 271 LSNNTIFGTLPSCFSPA-YIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLHGSIP 328
             NN +       F  A     + +S+ +I   L S   ++   L             +P
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL---KKLP 240

Query: 329 NRIDRLPQLSYLLLANNY 346
             +++L  L    L    
Sbjct: 241 T-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 44/236 (18%), Positives = 80/236 (33%), Gaps = 36/236 (15%)

Query: 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSG 206
                +++T EIP  +     +   L      L+  I    FS   +L  +++  N+   
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 207 EIPES-LSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLR 264
            I     S   +L  + +   N+L    P    NL  L  +++ N  ++ L  +      
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 265 FLRILDLSNNTIFGTLPS-CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323
              +LD+ +N    T+    F         LS                  V L L+ N +
Sbjct: 129 QKVLLDIQDNINIHTIERNSFV-------GLS---------------FESVILWLNKNGI 166

Query: 324 HGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLSGHIPP 377
              I N   +        L  NN +E E+P  +        ++D+S   +   +P 
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 40/263 (15%), Positives = 68/263 (25%), Gaps = 71/263 (26%)

Query: 22  QLTSISLSG-----YIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLL 76
            L  I +S       I+   F     +   L    +   N          +N  NL+ LL
Sbjct: 55  DLEKIEISQNDVLEVIEADVF----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 77  LANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIP 136
           ++N  +                          H+P     +    +  ++  N    +I 
Sbjct: 111 ISNTGI-------------------------KHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 137 S-SFADMQM-LARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFSKKFSL 191
             SF  +      L ++ N +  EI      G    E+    NN    L   +F      
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH---GA 201

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
           +  + L +                            L       L  L           N
Sbjct: 202 SGPVILDISRTRIH---------------------SLPSYGLENLKKLRAR-----STYN 235

Query: 252 LEGLIPIEFCQLRFLRILDLSNN 274
           L+ L  +E  +L  L    L+  
Sbjct: 236 LKKLPTLE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
                +K+T EIP+ +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 530 P----SQLTVLTTL 539
                S L  L  +
Sbjct: 71  EADVFSNLPKLHEI 84

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 30/228 (13%)

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN----SLQGHIFSKKF 189
            IPS     Q    L +    L   IP    +   ++  + +S +     L+ H F    
Sbjct: 25  RIPSLPPSTQ---TLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--- 77

Query: 190 SLTNLMTLQLDGNNFSGEIP-ESLSKCRRLGGLYLSDNHLSGEIP--RWLGNLSFLVDII 246
           +L+ +  +++        I  ++L +   L  L + +  L    P    + +      + 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 247 MPNNNLEGLIPIE-FCQLR-FLRILDLSNNTIFGTLPSC-FSPAYIEQVHLSKNKIEGRL 303
           + +N     IP+  F  L      L L NN    ++    F+   ++ V+L+KNK    L
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YL 192

Query: 304 ESVIPDS-----PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY 346
             +  D+          LD+S   +  ++P++   L  L  L+  N +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 10/188 (5%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQ 154
             TL +     +  IP    + LP +    +S +     + S SF ++  +  ++I   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 155 LTGEIPERMATGCFSLEILALSNNSLQGHI--FSKKFSLTNLMTLQLDGNNFSGEIPESL 212
               I          L+ L + N  L+      +K +S      L++  N +   IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 213 --SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI-IMPNNNLEGLIPIEFCQLR-FLRI 268
               C     L L +N  +  +  +  N + L  + +  N  L  +    F  +     +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 269 LDLSNNTI 276
           LD+S  ++
Sbjct: 210 LDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 16/214 (7%)

Query: 70  TNLETLLLANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125
            + +TL L    L      +F     +   ++ + VS +     +       L  +    
Sbjct: 31  PSTQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 126 LSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMA-TGCFSLEILALSNNSLQGH 183
           +        I      ++ +L  L I    L    P+           IL +++N     
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 184 IFSKKFS-LTN-LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL--GNL 239
           I    F  L N  +TL+L  N F+  +        +L  +YL+ N     I +    G  
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 240 SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN 273
           S    + +   ++  L       L+ L   +   
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 33/202 (16%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 22  QLTSISLSG-----YIDGGTFPKFLYHQHDLKNANLSHLNLSG-----EFPNWLVENNTN 71
            ++ I +S       ++  +F       ++L    ++H+ +             ++    
Sbjct: 56  NISRIYVSIDVTLQQLESHSF-------YNLSK--VTHIEIRNTRNLTYIDPDALKELPL 106

Query: 72  LETLLLANNSL--FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG-LMEFNLSR 128
           L+ L + N  L  F      ++S      L++++N +   IPV     L    +   L  
Sbjct: 107 LKFLGIFNTGLKMFPDLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 129 NAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFS-LEILALSNN---SLQGH 183
           N F  S+    F   + L  + ++ N+    I +    G +S   +L +S     +L   
Sbjct: 166 NGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 184 IFSKKFSLTNLMTLQLDGNNFS 205
                  L  L+      N ++
Sbjct: 224 GLE---HLKELIAR----NTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 30/166 (18%)

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
           C +     ++   +   IP    +   L    +   +L  +    F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 275 TIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DR 333
                L S                          +   +  +++        I       
Sbjct: 66  VTLQQLES----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 334 LPQLSYLLLANNYIEGEIP--VQLCQLKEVQLIDLSHNNLSGHIPP 377
           LP L +L + N  ++   P   ++       +++++ N     IP 
Sbjct: 104 LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 59/388 (15%), Positives = 131/388 (33%), Gaps = 70/388 (18%)

Query: 49  NANLSHLNLSG-----EFPNWLVENNTNLETLLLANNSL-------FGSFRMPIHSHQKL 96
           + ++  L++            L+      + + L +  L         S    +  +  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---LRVNPAL 58

Query: 97  ATLDVSNNFFQGHIPVEIGTYL----PGLMEFNLSRNAFN----GSIPSSFADMQMLARL 148
           A L++ +N         +   L      + + +L          G + S+   +  L  L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 149 DISYNQLTGE----IPERMATGCFSLEILALSNNSLQ----GHIFSKKFSLTNLMTLQLD 200
            +S N L       + E +      LE L L   SL       + S   +  +   L + 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 201 GNNFSGE----IPESLSKCR-RLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNN 251
            N+ +      + + L     +L  L L    ++ +    +   + + + L ++ + +N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 252 L-----EGLIPIEFCQLRFLRILDLSNNTI--------FGTLPSCFSPAYIEQVHLSKNK 298
           L       L P        LR L +    I           L +  S   ++++ L+ N+
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES---LKELSLAGNE 295

Query: 299 IEGR-----LESVIPDSPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYIEG 349
           +         E+++     L +L +              + + +   L  L ++NN +E 
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355

Query: 350 EIPVQLCQ-LKEV----QLIDLSHNNLS 372
               +LCQ L +     +++ L+  ++S
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 68/380 (17%), Positives = 117/380 (30%), Gaps = 79/380 (20%)

Query: 49  NANLSHLNLSGEFPNWL-----------VENNTNLETLLLANNSLFGS-----FRMPIHS 92
           +  +  L+L       L           +     L+ L L++N L  +         +  
Sbjct: 84  SCKIQKLSLQN---CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query: 93  HQKLATLDVSNNFFQGHIPVEIGTYL---PGLMEFNLSRNAFNGSIPSSFADM-----QM 144
             +L  L +            + + L   P   E  +S N  N +               
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 145 LARLDISYNQLTGEIPERMATG---CFSLEILALSNNSL-----QGHIFSKKFSLTNLMT 196
           L  L +    +T +    +        SL  LAL +N L                + L T
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 197 LQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           L +     + +    +   L     L  L L+ N L  E     G       ++ P   L
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-----GARLLCETLLEPGCQL 315

Query: 253 EGLIPIEFCQL---------------RFLRILDLSNNTI--------FGTLPSCFSPAYI 289
           E L  ++ C                 RFL  L +SNN +           L    S   +
Sbjct: 316 ESLW-VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV--L 372

Query: 290 EQVHLSKNKI--EG--RLESVIPDSPNLVTLDLSYNCLHGSIPNRI-----DRLPQLSYL 340
             + L+   +       L + +  + +L  LDLS NCL  +   ++          L  L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 341 LLANNYIEGEIPVQLCQLKE 360
           +L + Y   E+  +L  L++
Sbjct: 433 VLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 42/249 (16%), Positives = 69/249 (27%), Gaps = 54/249 (21%)

Query: 48  KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQ 107
             A+L  L L     N L   +  +  L              +H   +L TL +      
Sbjct: 225 SKASLRELALGS---NKL--GDVGMAELCPG----------LLHPSSRLRTLWIWECGIT 269

Query: 108 GHIPVEIGTYL---PGLMEFNLSRNAFNGSIPSSFADMQM-----LARLDISYNQLTGEI 159
                ++   L     L E +L+ N           +  +     L  L +     T   
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 160 PERMATG---CFSLEILALSNNSLQG---HIFSK--KFSLTNLMTLQLDGNNFSGE---- 207
               ++       L  L +SNN L+        +      + L  L L   + S      
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
           +  +L     L  L LS+N L          +  LV+ +     L             L 
Sbjct: 390 LAATLLANHSLRELDLSNNCLGDAG------ILQLVESVRQPGCL-------------LE 430

Query: 268 ILDLSNNTI 276
            L L +   
Sbjct: 431 QLVLYDIYW 439

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 14/185 (7%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            +   L L+ N L+      +  + +L  L++        + V+    LP L   +LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHN 87

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGHIFS 186
               S+P     +  L  LD+S+N+LT  +P     G   L+ L L  N   +L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 187 KKFSLTNLMTLQLDGNNFSGEIPESL-SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI 245
                  L  L L  NN + E+P  L +    L  L L +N L   IP+       L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 246 IMPNN 250
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 45/217 (20%), Positives = 75/217 (34%), Gaps = 38/217 (17%)

Query: 169 SLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
           S   +     +L      +        +   L L  N        +L    RL  L L  
Sbjct: 11  SHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-------FG 278
             L+ ++    G L  L  + + +N L+ L P+    L  L +LD+S N +         
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-----PNLVTLDLSYNCLHGSIPNRI-D 332
            L        +++++L  N++       +P       P L  L L+ N L   +P  + +
Sbjct: 122 GLGE------LQELYLKGNEL-----KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169

Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
            L  L  LLL  N +   IP        +    L  N
Sbjct: 170 GLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 221 LYLSDNHLS---GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
           +     +L+    ++P+    L       +  N L             L  L+L    + 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILH------LSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-DRLPQ 336
             L    +   +  + LS N+++  L  +    P L  LD+S+N L  S+P      L +
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE 125

Query: 337 LSYLLLANNYIEGEIPVQLCQ-LKEVQLIDLSHNNLSGHIPP 377
           L  L L  N ++  +P  L     +++ + L++NNL+  +P 
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L  +  +DLS N+L   +P     L  +  L++S N LT         L +++ L L  N
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 524 LLHGKIPS----QLTVLTTL 539
            L   +P         L  L
Sbjct: 135 ELK-TLPPGLLTPTPKLEKL 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 463 ILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           +      + LS N L       +   T++  LNL    LT  +      L  + +LDLS+
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSH 86

Query: 523 NLLHGKIPS---QLTVLTTL 539
           N L   +P     L  LT L
Sbjct: 87  NQLQ-SLPLLGQTLPALTVL 105

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 31/265 (11%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
           L   ++    ++        + AD+  +  L      +T  I         +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKD 72

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
           N +     +   +LT +  L+L GN        +++  + +  L L+   ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-----FGTLPSCFSPAYIEQV 292
            LS L  + +  N +  + P+    L  L+ L + N  +        L        +  +
Sbjct: 127 GLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLTPLANLSK------LTTL 178

Query: 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
               NKI     S +   PNL+ + L  N +    P  +     L  + L N  I  +  
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 353 VQLCQLKEVQLIDLSHNNLSGHIPP 377
                   + + ++        I P
Sbjct: 235 F---YNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 16/218 (7%)

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
           +   +A   +++       +  L  + TL   G   +  I E +     L GL L DN +
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQI 75

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAY 288
           +   P  L NL+ + ++ +  N L+ +  I    L+ ++ LDL++  I   +      + 
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQI-TDVTPLAGLSN 130

Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348
           ++ ++L  N+I     S +    NL  L +    +   +   +  L +L+ L   +N I 
Sbjct: 131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 349 GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
              P  L  L  +  + L +N +S  + P    ++L  
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFI 221

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
           +L N + +    +N +     + +    +  L      ++      +  L+ L+ + + +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
           N +  L P++   L  +  L+LS N +   + +      I+ + L+  +I     + +  
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
             NL  L L  N +  +I   +  L  L YL + N  +    P  L  L ++  +    N
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 370 NLSGHIPPCLVNTSLSE 386
            +S  I P     +L E
Sbjct: 184 KIS-DISPLASLPNLIE 199

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 20/237 (8%)

Query: 51  NLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
            ++ L+  G     +  V+   NL  L L +N +  +   P+ +  K+  L++S N  + 
Sbjct: 42  GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKN 99

Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
              +     L  +   +L+        P   A +  L  L +  NQ+T  I      G  
Sbjct: 100 VSAIA---GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP--LAGLT 151

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
           +L+ L++ N  +          L+ L TL+ D N  S +I   L+    L  ++L +N +
Sbjct: 152 NLQYLSIGNAQVSDLTPLAN--LSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQI 207

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS 285
           S   P  L N S L  + + N  +          L       +   +     P+  S
Sbjct: 208 SDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATIS 260

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 6e-13
 Identities = 47/325 (14%), Positives = 98/325 (30%), Gaps = 29/325 (8%)

Query: 73  ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN 132
           ++    +  L G             + + +        P+ +G+ +  L+          
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSV 285

Query: 133 GSIPSSFAD-MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL 191
                   +    +   D+    L  ++P+      ++          L+          
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 192 TNLMTLQLD--GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI---PRWLGNLSFLVDII 246
                L         S  +   L  C+ L  L   +      I    R L  L +  + +
Sbjct: 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 247 MPNNNLEGLIP------------------IEFCQLRFLRILDLSNNTIFGTLPSCFSPAY 288
              + L+ + P                  +   +   +R+L L++  +   L        
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLL 464

Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348
           +  + LS N++   L   +     L  L  S N L  ++   +  LP+L  LLL NN ++
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQELLLCNNRLQ 521

Query: 349 G-EIPVQLCQLKEVQLIDLSHNNLS 372
                  L     + L++L  N+L 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 7e-10
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 25/234 (10%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
              L    LS       + S     + L  L+         I   M     +L+ L    
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR----ALDPLLYEK 402

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
            +LQ     K         L    + F  E      +   +  L+L+   L+  +   L 
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE 460

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-----FGTLPSCFSPAYIEQV 292
            L  +  + + +N L   +P     LR L +L  S+N +        LP        +++
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDGVANLPRL------QEL 513

Query: 293 HLSKNKIEGRLESVIPDS--PNLVTLDLSYNCLHGSIPNR---IDRLPQLSYLL 341
            L  N+++    ++ P    P LV L+L  N L      +    + LP +S +L
Sbjct: 514 LLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 525
           +DLS N+L   +P  +  L  +  L  S N L   +    +NL +++ L L  N L
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 529
           + L+   LT  +   +  L  +  L+LSHN L   +P   + L+ +E L  S N L   +
Sbjct: 446 LHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENV 501

Query: 530 P--SQLTVLTTL 539
              + L  L  L
Sbjct: 502 DGVANLPRLQEL 513

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 16/230 (6%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
               ++ NL + +       +  ++  + ++  + + +   +         ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
           N L   I     +L NL  L LD N    ++  SL   ++L  L L  N +S +I   L 
Sbjct: 78  NKLT-DIKPLA-NLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297
           +L  L  + + NN +  +  +   +L  L  L L +N I   +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI 347
            I   L + +    NL  L+L          N    L   + +   +  +
Sbjct: 189 HIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 25/208 (12%)

Query: 170 LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS 229
                L   S+       +  L ++  +  + ++    + + +     +  L+L+ N L+
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI-----FGTLPSCF 284
              P  L NL  L  + +  N ++ L  ++   L+ L+ L L +N I        LP   
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDINGLVHLPQ-- 135

Query: 285 SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLAN 344
               +E ++L  NKI     +V+     L TL L  N +   I   +  L +L  L L+ 
Sbjct: 136 ----LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187

Query: 345 NYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           N+I  ++   L  LK + +++L      
Sbjct: 188 NHIS-DLR-ALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 210 ESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRIL 269
            S           L    ++  +      L+ +  II  N++++ +  I+   L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 270 DLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN 329
            L+ N +   +    +   +  + L +NK++  L S + D   L +L L +N +   I  
Sbjct: 74  FLNGNKL-TDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING 129

Query: 330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
            +  LPQL  L L NN I  +I V L +L ++  + L  N +S  I P    T L  
Sbjct: 130 -LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQN 182

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 18/211 (8%)

Query: 51  NLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
           ++  +  +      +  ++   N+  L L  N L  +   P+ + + L  L +  N    
Sbjct: 47  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDEN---- 100

Query: 109 HIP-VEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167
            +  +     L  L   +L  N  +  I +    +  L  L +  N++T +I     +  
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITVL--SRL 155

Query: 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
             L+ L+L +N +          LT L  L L  N+ S ++  +L+  + L  L L    
Sbjct: 156 TKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQE 211

Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI 258
              +      NL     +   + +L     I
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 11/185 (5%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
           +    +   L  ++ +      ++    L  + L++ +++      +     + D+ + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLSKNKIEGRLESVIP 308
            +     PI    L  L  L +    +        S    +  + +S +  +  + + I 
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
             P + ++DLSYN     I   +  LP+L  L +  + +       +    ++  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 369 NNLSG 373
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 132 NGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL 191
           + +   + A M  L  + ++   +T       A    +++ L ++N       ++    L
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDLTGIEYAH---NIKDLTINNIHATN--YNPISGL 87

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI-IMPNN 250
           +NL  L++ G + + +   +LS    L  L +S +     I   +  L  +  I +  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTI-----FGTLPSCFSPAYIEQVHLSKNKI 299
            +  ++P++   L  L+ L++  + +         P       + Q++     I
Sbjct: 148 AITDIMPLK--TLPELKSLNIQFDGVHDYRGIEDFPK------LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 244 DIIMPNNNLEGLI----------PIEFCQLRFLRILDLSNNTI-----FGTLPSCFSPAY 288
           ++ +P++  +  +           I   Q+  L  + L+N  +          +      
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN------ 67

Query: 289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE 348
           I+ + ++         + I    NL  L +    +       +  L  L+ L ++++  +
Sbjct: 68  IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 349 GEIPVQLCQLKEVQLIDLSHNNLSGHIPP 377
             I  ++  L +V  IDLS+N     I P
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           L+++  + +    +T +    +  LT +  L++SH+    +I T  + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 524 LLHGKIP--SQLTVLTTL 539
                I     L  L +L
Sbjct: 147 GAITDIMPLKTLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            +L  + LAN ++  +    I     +  L ++N     + P+     L  L    +   
Sbjct: 44  NSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERLRIMGK 98

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
                   + + +  L  LDIS++     I  ++      +  + LS N     I   K 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLK- 156

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE 231
           +L  L +L +  +         +    +L  LY     + G+
Sbjct: 157 TLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 50  ANLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQ 107
            +L+++ L+      L  +E   N++ L + N     +   PI     L  L +      
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVT 101

Query: 108 GHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC 167
                 +   L  L   ++S +A + SI +    +  +  +D+SYN    +I        
Sbjct: 102 SDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTL 158

Query: 168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE 207
             L+ L +  + +    +        L  L        G+
Sbjct: 159 PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           LTS+  +D+S +     I T+I  L K+++++LS+N     I      L +++SL++ ++
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 524 LLHGKIP-SQLTVLTTL 539
            +H          L  L
Sbjct: 170 GVHDYRGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             ++  + ++    T   P  I  L+ +  L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 524 LLHGKIPSQLTVLTTL 539
                I +++  L  +
Sbjct: 123 AHDDSILTKINTLPKV 138

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
           + S+  I L+   +T ++ T I Y   I  L +++ + T   P   S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 524 LLHGKIPSQLTVLTTL 539
            +       L+ LT+L
Sbjct: 99  DVTSDKIPNLSGLTSL 114

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
            L N +   L   + +     S  +   +      ++++   +   +   + L ++ + +
Sbjct: 17  GLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
           N +  L P++   L  L  L ++ N +     +    A + ++ L  N++       +  
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELRD--TDSLIH 126

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
             NL  L +  N L  SI   +  L +L  L L  N I       L +LK+V  IDL+  
Sbjct: 127 LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 370 NLS 372
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 39/230 (16%)

Query: 118 LPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN 177
           L   ++ NL +   + +   S  ++  +   +   + +             SL  +    
Sbjct: 18  LANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ------------SLAGMQ--- 60

Query: 178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
                         TNL  L L  N  S ++   L    +L  L ++ N L   +   + 
Sbjct: 61  ------------FFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NLNG-IP 104

Query: 238 NLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297
           +   L  + + NN L     +    L+ L IL + NN +  ++      + +E + L  N
Sbjct: 105 SAC-LSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGN 160

Query: 298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI 347
           +I       +     +  +DL+              L   + +   +   
Sbjct: 161 EITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLES 305
           I     +  + P     L      +L   ++   L S    + ++  +   + I+  L  
Sbjct: 3   IQRPTPINQVFPDP--GLANAVKQNLGKQSV-TDLVSQKELSGVQNFNGDNSNIQ-SLAG 58

Query: 306 VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID 365
            +    NL  L LS+N +   +   +  L +L  L +  N ++    +    L     + 
Sbjct: 59  -MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR---LF 112

Query: 366 LSHNNLS 372
           L +N L 
Sbjct: 113 LDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 45/214 (21%)

Query: 51  NLSHLNLSGEFPNWL-----VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
            + + N      + +     ++  TNL+ L L++N +  S   P+    KL  L V+ N 
Sbjct: 42  GVQNFNGDN---SNIQSLAGMQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRN- 95

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
               +    G     L    L  N        S   ++ L  L I  N+L          
Sbjct: 96  ---RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNNKLK--------- 141

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
                 I+ L               L+ L  L L GN  +      L++ +++  + L+ 
Sbjct: 142 -----SIVMLGF-------------LSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTG 181

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE 259
                E  ++   L     +  P+        I 
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 9/158 (5%)

Query: 134 SIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-L 191
           ++P S  +       LD+S+N L+    E   T   +L  L LS+N L   I S+ F  +
Sbjct: 32  NVPQSLPSYTA---LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
            NL  L L  N+         S  + L  L L +NH+         +++ L  + +  N 
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 252 LEGLIP---IEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
           +         +  +L  L +LDLS+N +     +    
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 47/184 (25%), Positives = 64/184 (34%), Gaps = 33/184 (17%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           +LSH NLS     W     TNL +LLL++N L                           I
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-------------------------NFI 79

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPS-SFADMQMLARLDISYNQLTGEIPERMATGCFS 169
             E    +P L   +LS N  + ++    F+D+Q L  L +  N +   +          
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 170 LEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG--GLYLS 224
           L+ L LS N        +      L  LM L L  N         L K       GLYL 
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 225 DNHL 228
           +N L
Sbjct: 198 NNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 20/163 (12%)

Query: 221 LYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--- 276
           L LS N+LS     W    L+ L  +++ +N+L  +    F  +  LR LDLS+N +   
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103

Query: 277 ----FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI- 331
               F  L +      +E + L  N I     +   D   L  L LS N +    P  + 
Sbjct: 104 DEFLFSDLQA------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 332 ---DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS-HNN 370
              ++LP+L  L L++N ++      L +L       L  HNN
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 266 LRILDLSNNTIFGTLPSCFSPAYI---EQVHLSKNKIEGRLESVIPDS-----PNLVTLD 317
             +LDLS+N +   L + ++P  +     + LS N +     + I        PNL  LD
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLD 94

Query: 318 LSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
           LS N LH ++   +   L  L  LLL NN+I          + ++Q + LS N +S   P
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 377 P 377
            
Sbjct: 153 V 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 470 IDLSCNKLTGEIPTQI--GYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLH 526
           +DLS N L+  +  +     LT +H+L LSHN+L   I +  F  +  +  LDLS N LH
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 527 GKIPSQ----LTVLTTL 539
             +       L  L  L
Sbjct: 102 -TLDEFLFSDLQALEVL 117

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           + ++  +DLS N L   +   +   L  +  L L +N++       F ++ Q++ L LS 
Sbjct: 87  VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 523 NLLHGKIP-------SQLTVLTTL 539
           N +  + P       ++L  L  L
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLL 168

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 57/346 (16%), Positives = 102/346 (29%), Gaps = 98/346 (28%)

Query: 67  ENNTNLETLLLANNSL-------FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP 119
             + +++ ++L+ N++              I S + L   + S+ F  G +  EI   L 
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFSDIFT-GRVKDEIPEALR 84

Query: 120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG---CFSLEILALS 176
            L++              +      L  + +S N       E +         LE L L 
Sbjct: 85  LLLQ--------------ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 130

Query: 177 NNSL-------------QGHIFSKKFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLG 219
           NN L             +  +  K  +   L ++    N           ++    R L 
Sbjct: 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 220 GLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT 279
            + +  N +  E     G    L++ +     L              ++LDL +NT    
Sbjct: 191 TVKMVQNGIRPE-----GIEHLLLEGLAYCQEL--------------KVLDLQDNTF--- 228

Query: 280 LPSCFSPAYIEQVHLSKNKIEG--RLESVIPDSPNLVTLDLSYNCL--HGSIP----NRI 331
                                G   L   +   PNL  L L+   L   G+         
Sbjct: 229 ------------------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 332 DRLPQLSYLLLANNYIEGEIPVQLCQ-----LKEVQLIDLSHNNLS 372
                L  L L  N IE +    L       + ++  ++L+ N  S
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 36/255 (14%), Positives = 74/255 (29%), Gaps = 51/255 (20%)

Query: 168 FSLEILALSNNSLQG----HIFSKKFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLG 219
           FS+E  +L  +++       +F+      ++  + L GN    E    + E+++  + L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 220 GLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL------------EGLIPIE--FCQLRF 265
               SD             L  L+  ++    L                P+     +   
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 266 LRILDLSNNTI--------FGTLPSCFSPAY------IEQVHLSKNKIEGR----LESVI 307
           L  L L NN +           L              +  +   +N++E           
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 308 PDSPNLVTLDLSYNCLH-----GSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-----LCQ 357
                L T+ +  N +        +   +    +L  L L +N     +        L  
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALKS 242

Query: 358 LKEVQLIDLSHNNLS 372
              ++ + L+   LS
Sbjct: 243 WPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 43/229 (18%), Positives = 65/229 (28%), Gaps = 49/229 (21%)

Query: 47  LKNANLSHLNLSGEFPNWL-----------VENNTNLETLLLANNSL------------- 82
           LK   L  + LS    N             +  +T LE L L NN L             
Sbjct: 91  LKCPKLHTVRLSD---NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 83  FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYL---PGLMEFNLSRNAFN-----GS 134
             +      +   L ++    N  +     E          L    + +N          
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 135 IPSSFADMQMLARLDISYNQLTGEIPERMATG---CFSLEILALSNNSLQG----HIFS- 186
           +    A  Q L  LD+  N  T      +A       +L  L L++  L       +   
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 187 -KKFSLTNLMTLQLDGNNFSGE----IPESL-SKCRRLGGLYLSDNHLS 229
             K     L TL+L  N    +    +   +  K   L  L L+ N  S
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 268 ILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI 327
           ++ L+   I        +     ++ L   KI   +E++         +D S N +   +
Sbjct: 1   MVKLTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
                 L +L  LL+ NN I          L ++  + L++N+L 
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 38/159 (23%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV---DII 246
           +      L L G      I    +   +   +  SDN +       L     L     ++
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLKTLL 70

Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV-HLSKNKIEGRLES 305
           + NN +  +       L  L  L L+NN++            +  +  L+          
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSL----------VELGDLDPLASL-------- 112

Query: 306 VIPDSPNLVTLDLSYNCLHGSIPN-R---IDRLPQLSYL 340
                 +L  L +  N +  +  + R   I ++PQ+  L
Sbjct: 113 -----KSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 29/208 (13%)

Query: 151 SYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFSGEIP 209
           S  +LT  IP  +       + L L +N L   + SK F  LT L  L L+ N     +P
Sbjct: 24  SSKKLT-AIPSNIPA---DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77

Query: 210 ESL-SKCRRLGGLYLSDNHLS---GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF 265
             +  + + L  L+++DN L      +   L NL+ L    +  N L+ L P  F  L  
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTK 134

Query: 266 LRILDLSNNTI-------FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318
           L  L L  N +       F  L S      ++++ L  N+++   E        L TL L
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTS------LKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 319 SYNCLHGSIPNRI-DRLPQLSYLLLANN 345
             N L   +P    D L +L  L L  N
Sbjct: 189 DNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ--- 181
           +L  N  +     +F  +  L  L ++ N+L   +P  +     +LE L +++N LQ   
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPE----SLSKCRRLGGLYLSDNHLSGEIPRWL- 236
             +F +   L NL  L+LD N     +P     SL+K   L  L L  N L   +P+ + 
Sbjct: 102 IGVFDQ---LVNLAELRLDRNQLK-SLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVF 153

Query: 237 GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP-AYIEQVHLS 295
             L+ L ++ + NN L+ +    F +L  L+ L L NN +       F     ++ + L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 296 KN 297
           +N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 49/184 (26%), Positives = 69/184 (37%), Gaps = 38/184 (20%)

Query: 51  NLSHLNLSG----EFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
            L  L L+       P  + +   NLETL + +N              KL  L       
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN--------------KLQAL------- 100

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMAT 165
               P+ +   L  L E  L RN    S+P   F  +  L  L + YN+L   +P+ +  
Sbjct: 101 ----PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 166 GCFSLEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLY 222
              SL+ L L NN    +    F K   LT L TL+LD N        +     +L  L 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDK---LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 223 LSDN 226
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH---G 527
           DL  NKL+         LTK+  L L+ N L       F  LK +E+L ++ N L     
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 528 KIPSQLTVLTTL 539
            +  QL  L  L
Sbjct: 103 GVFDQLVNLAEL 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 40/164 (24%)

Query: 70  TNLETLLLANNSL----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN 125
             +  + L  N++     G+F      ++KL  +D+SNN             L       
Sbjct: 32  ETITEIRLEQNTIKVIPPGAF----SPYKKLRRIDLSNNQIS---------ELA------ 72

Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG--- 182
                     P +F  ++ L  L +  N++T E+P+ +  G FSL++L L+ N +     
Sbjct: 73  ----------PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRV 121

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
             F     L NL  L L  N        + S  R +  ++L+ N
Sbjct: 122 DAFQD---LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQ 181
            L +N      P +F+  + L R+D+S NQ++ E+      G  SL  L L  N    L 
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF 241
             +F     L +L  L L+ N  +    ++      L  L L DN L          L  
Sbjct: 97  KSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 242 LVDIIMPNN 250
           +  + +  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 221 LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI---- 276
           + L  N +    P        L  I + NN +  L P  F  LR L  L L  N I    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 277 ---FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-D 332
              F  L S      ++ + L+ NKI         D  NL  L L  N L  +I      
Sbjct: 97  KSLFEGLFS------LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFS 149

Query: 333 RLPQLSYLLLANN 345
            L  +  + LA N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 27/126 (21%)

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
            N ++ + P  F   + LR +DLSNN I   L                            
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELA----------------------PDAFQ 77

Query: 309 DSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQL-CQLKEVQLIDL 366
              +L +L L  N +   +P  + + L  L  LLL  N I   + V     L  + L+ L
Sbjct: 78  GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135

Query: 367 SHNNLS 372
             N L 
Sbjct: 136 YDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 464 LTSMFGIDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 522
           L S+  + L  NK+T E+P  +   L  +  L L+ N +       F +L  +  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 523 NLLHGKIP----SQLTVLTTL 539
           N L   I     S L  + T+
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 470 IDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 528
           I L  N +    P       K+  ++LS+N ++  +    F  L+ + SL L  N +  +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 529 IPS----QLTVLTTL 539
           +P      L  L  L
Sbjct: 95  LPKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 302 RLESV---IPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLC-Q 357
            L  +   +P    +  + L  N +    P       +L  + L+NN I  E+       
Sbjct: 22  GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG 78

Query: 358 LKEVQLIDLSHNNLSGHIPP 377
           L+ +  + L  N ++  +P 
Sbjct: 79  LRSLNSLVLYGNKIT-ELPK 97

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 52/368 (14%), Positives = 106/368 (28%), Gaps = 80/368 (21%)

Query: 49  NANLSHLNLSG---------EFPNWLVENNTNLETLLLANNSLFGS-----FRMPIHSHQ 94
              ++ L+LS          E          ++ +L L+ NSL         ++      
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 95  KLATLDVSNNFFQGHIPVEIGTYLPG----LMEFNLSRNAFNGSIPSSFADM-----QML 145
            + +L++S NF       E+   L      +   +L  N F+    S F          +
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 146 ARLDISYNQLTGE----IPERMATGCFSLEILALSNNSLQGHIFSKKFSL------TNLM 195
             L++  N L  +    + + +A    ++  L L  N+L       + +        ++ 
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVT 199

Query: 196 TLQLDGNNFSGE----IPESLSKC-RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
           +L L  N    +    +    S     +  L L  N L G       +L  L  +     
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP------SLENLKLLKDSLK 253

Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS 310
           +              L+ + L  + +                          L +  P+ 
Sbjct: 254 H--------------LQTVYLDYDIVKNMSKEQCK----------------ALGAAFPNI 283

Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQ-----LSYLLLANNYIEGEIPVQLCQLKEVQLID 365
             ++ +D +   +H S    I  L +          L N  +      Q          +
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 366 LSHNNLSG 373
           L  +  + 
Sbjct: 344 LRESIQTC 351

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 285 SPAYIEQVHLSKNKI-EGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLA 343
           +P+ ++++ L  ++  EG+LE +  +   L  L      L  SI N + +L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 344 NNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           +N + G + V   +   +  ++LS N + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 14/126 (11%)

Query: 169 SLEILALSNNSLQ-GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH 227
            ++ L L N+    G +         L  L       +  I  +L K  +L  L LSDN 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNR 75

Query: 228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE-FCQLRFLRILDLSNN----------TI 276
           +SG +         L  + +  N ++ L  IE   +L  L+ LDL N            +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 277 FGTLPS 282
           F  LP 
Sbjct: 136 FKLLPQ 141

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 28/124 (22%)

Query: 249 NNNLEGLIPIEFC--QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESV 306
           +N+      +E    +   L  L   N  +                      I       
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGL--------------------TSIAN----- 59

Query: 307 IPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG-EIPVQLCQLKEVQLID 365
           +P    L  L+LS N + G +    ++ P L++L L+ N I+       L +L+ ++ +D
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 366 LSHN 369
           L + 
Sbjct: 120 LFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 132 NGSIPSSFADMQMLARLDISYNQLT--GEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
            G +     + + L  L      LT    +P+        L+ L LS+N + G +     
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNRVSGGLEVLAE 85

Query: 190 SLTNLMTLQLDGNNFSG-EIPESLSKCRRLGGLYLSDN 226
              NL  L L GN        E L K   L  L L + 
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 12/162 (7%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            + E L L +  L            KL  L++  N  Q  +   +   L  L    L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 130 AFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ----GHI 184
               S+P   F  +  L +L +  NQL   +P  +      L+ L L+ N LQ    G  
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-A 150

Query: 185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN 226
           F K   LTNL TL L  N        +  +  +L  + L  N
Sbjct: 151 FDK---LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ---G 182
           L          ++F  +  L  L++ YNQL   +   +      L  L L+NN L     
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGEIPE----SLSKCRRLGGLYLSDNHLSGEIP----R 234
            +F     LT L  L L GN     +P      L+K   L  L L+ N L   IP     
Sbjct: 101 GVFDH---LTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQLQ-SIPAGAFD 152

Query: 235 WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
            L NL  L    +  N L+ +    F +L  L+ + L  N
Sbjct: 153 KLTNLQTLS---LSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 221 LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280
           L L    L+         L+ L  + +  N L+ L    F  L  L  L L+NN +  +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 281 PS-CF-SPAYIEQVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLHGSIPNRI-DRLPQ 336
           P   F     +++++L  N+++  L S + D    L  L L+ N L  SIP    D+L  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 337 LSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
           L  L L+ N ++        +L ++Q I L   N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 19/164 (11%)

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS---GEIPRWLGNLSFLVDIIMP 248
            +   L L     +     +     +L  L L  N L      +   L  L  L    + 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG---LA 91

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVI 307
           NN L  L    F  L  L  L L  N +       F     ++++ L+ N++       I
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-----QSI 146

Query: 308 PDS-----PNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
           P        NL TL LS N L  S+P+   DRL +L  + L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 285 SPAYIEQVHLSKNKI-EGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLA 343
           +PA + ++ L   K  +G++E +  +  NL  L L    L  S+ N + +LP+L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 344 NNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
            N I G + +   +L  +  ++LS N L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESV 306
           M       L       +R L +LD   +              +E + L    +   + + 
Sbjct: 10  MKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN- 66

Query: 307 IPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQLID 365
           +P  P L  L+LS N + G +    ++LP L++L L+ N ++    ++ L +L+ ++ +D
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 366 LSHN 369
           L + 
Sbjct: 127 LFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 30/159 (18%)

Query: 187 KKFSLTNLMTLQLDGNNFS-GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDI 245
           +  +   +  L LD    + G+I    ++   L  L L +  L   +   L  L  L  +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 246 IMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV-HLSKNKIEGRLE 304
            +  N + G + +   +L  L  L+LS N +            I  +  L K        
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKL----------KDISTLEPLKKL------- 119

Query: 305 SVIPDSPNLVTLDLSYNCLHGSIPNR---IDRLPQLSYL 340
                   L +LDL    +      R      LPQL+YL
Sbjct: 120 ------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 70  TNLETLLLANNSL-----FGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF 124
                L L NN        G F        +L  ++ SNN     I         G+ E 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEI 86

Query: 125 NLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH 183
            L+ N    ++    F  ++ L  L +  N++T  +      G  S+ +L+L +N +   
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 184 IFSKKF-SLTNLMTLQLDGNNF 204
           +    F +L +L TL L  N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 221 LYLSDNHLSGEIPR-WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTI--- 276
           L L++N  +          L  L  I   NN +  +    F     +  + L++N +   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 277 ----FGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI- 331
               F  L S      ++ + L  N+I            ++  L L  N +  ++     
Sbjct: 97  QHKMFKGLES------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 332 DRLPQLSYLLLANN 345
           D L  LS L L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 8/144 (5%)

Query: 134 SIPSSF-ADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SL 191
            IP            L ++ N+ T      +      L  +  SNN +   I    F   
Sbjct: 25  KIPEHIPQYTA---ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGA 80

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWL-GNLSFLVDIIMPNN 250
           + +  + L  N       +       L  L L  N ++  +       LS +  + + +N
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

Query: 251 NLEGLIPIEFCQLRFLRILDLSNN 274
            +  + P  F  L  L  L+L  N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 263 LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
           L       L    IF  LP       + +++ S NKI    E     +  +  + L+ N 
Sbjct: 39  LNNNEFTVLEATGIFKKLPQ------LRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 323 LHGSIPNRI-DRLPQLSYLLLANNYIEGEIPVQL-CQLKEVQLIDLSHNNLSGHIPP 377
           L  ++ +++   L  L  L+L +N I   +       L  V+L+ L  N ++  + P
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 470 IDLSCNKLTGEIPTQI-GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528
           + L+ N+ T    T I   L ++  +N S+N +T      F     +  + L+ N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 529 IPS----QLTVLTTL 539
           +       L  L TL
Sbjct: 96  VQHKMFKGLESLKTL 110

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 38/162 (23%), Positives = 55/162 (33%), Gaps = 39/162 (24%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
           +L     L L  NN   +I  SLS    L  L L  N +  +I         L ++ +  
Sbjct: 46  TLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV-HLSKNKIEGRLESVIP 308
           N +  L  IE  +L  LR+L +SNN I              ++  L+             
Sbjct: 103 NQIASLSGIE--KLVNLRVLYMSNNKI----------TNWGEIDKLAAL----------- 139

Query: 309 DSPNLVTLDLSYNCLHGSIPNR----------IDRLPQLSYL 340
               L  L L+ N L+                + RLP L  L
Sbjct: 140 --DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 221 LYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL 280
           L+     +  ++   L  L     + +  NN+E +  +    +  LRIL L  N I    
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIKKIE 86

Query: 281 PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH--GSIPNRIDRLPQLS 338
                   +E++ +S N+I   L   I    NL  L +S N +   G I +++  L +L 
Sbjct: 87  NLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLE 143

Query: 339 YLLLANNYIEGEIP 352
            LLLA N +  +  
Sbjct: 144 DLLLAGNPLYNDYK 157

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRW-LGNLSFLVDIIMPNNNLEGLIPIEFCQLRF 265
           +    L     L  LY+ +      +    L  L  L ++ +  + L  + P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN 297
           L  L+LS N +            ++++ LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 3/96 (3%)

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFS-LT 192
                    + L  L I   Q    +  R   G   L  L +  + L+  +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
            L  L L  N     +     +   L  L LS N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 307 IPDSPNLVTLDLSYNCLHGSIPNR-IDRLPQLSYLLLANNYIEGEIPVQ-LCQLKEVQLI 364
           +P + NL  L +        +  R +  L +L  L +  + +   +          +  +
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRL 85

Query: 365 DLSHNNLSGHIPPCLVNTSLSEGH 388
           +LS N L       +   SL E  
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELV 109

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 8/125 (6%)

Query: 256 IPIEFCQLRFLRILDLSNNTIFGTLPS-CFSP-AYIEQVHLSKNKIEGRLESVIPDSPNL 313
                     L  L + N      L          +  + + K+ +          +P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
             L+LS+N L  S+  +  +   L  L+L+ N +        C L+ +Q  +        
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 374 HIPPC 378
                
Sbjct: 137 EQKLQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 470 IDLSCNKLTGEIPTQ-IGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526
           + +   +    +  + +  L ++  L +  + L    P  F    ++  L+LS+N L 
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 7/75 (9%)

Query: 471 DLSC-NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 528
            L C      +    +     +  L + +      +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 529 IP----SQLTVLTTL 539
           +          L+ L
Sbjct: 71  VAPDAFHFTPRLSRL 85

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 3e-06
 Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 36/195 (18%)

Query: 191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG----------NLS 240
           L  +  L       +  +         L  L +    L   +   +            L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 241 FLVDIIMPNNNLEGLIPI-EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKI 299
             V+    + ++    P+    +   L+ L + +      +   F  +            
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES------------ 275

Query: 300 EGRLESVIPDSPNLVTLDLSYNCLHGS----IPNRIDRLPQLSYLLLANNYIEGEIPVQL 355
                      P L T+D+S   L       + + +D++  L ++ +  NY+  E+  +L
Sbjct: 276 --------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

Query: 356 CQLKEVQLIDLSHNN 370
            +   +++ D+S + 
Sbjct: 328 QKSLPMKI-DVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 19/167 (11%)

Query: 64  WLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGT-YLPGLM 122
            +++    L  L +   +   +  +       L +L++ +      +  +I    LP L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 123 EFNLSRNAFNGSIPSSFADMQ---------MLARLDISYNQLTGEIPERMATGCF--SLE 171
           +  L     +          +          L  L I   +    + E          LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 172 ILALSNNSLQG----HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSK 214
            + +S   L       +      + +L  + +  N  S E+ + L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 6e-05
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 17/123 (13%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           NL  L L     ++  + + N+   L + +               L  L + +   Q  +
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQNVV 268

Query: 111 PVEIGT--YLPGLMEFNLSRNAFNGS----IPSSFADMQMLARLDISYNQLTGEIPERMA 164
                    LP L   ++S           +      ++ L  +++ YN L+ E+ + + 
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

Query: 165 TGC 167
              
Sbjct: 329 KSL 331

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 16/133 (12%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF----SLEILALSNN-- 178
            L  N      P  F  +  L  L +  NQL   +P     G F     L +L L  N  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----GVFDSLTQLTVLDLGTNQL 100

Query: 179 -SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLG 237
             L   +F +   L +L  L +  N  + E+P  + +   L  L L  N L         
Sbjct: 101 TVLPSAVFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 238 NLSFLVDIIMPNN 250
            LS L    +  N
Sbjct: 157 RLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 24/115 (20%)

Query: 123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS----LEILALSNN 178
           E  L  N F   +P   ++ + L  +D+S N+++  +        FS    L  L LS N
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYN 88

Query: 179 ---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE----SLSKCRRLGGLYLSDN 226
               +    F     L +L  L L GN+ S  +PE     LS    L  L +  N
Sbjct: 89  RLRCIPPRTFDG---LKSLRLLSLHGNDIS-VVPEGAFNDLSA---LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
            L  N+ T  +P ++     +  ++LS+N ++     +FSN+ Q+ +L LSYN L   IP
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IP 94

Query: 531 S----QLTVLTTL 539
                 L  L  L
Sbjct: 95  PRTFDGLKSLRLL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 27/99 (27%)

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS-CFSPAYIEQVHLSKNKIEGRLESVI 307
           + N   L+P E    + L ++DLSNN I  TL +  FS       +++            
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFS-------NMT------------ 78

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
                L+TL LSYN L   IP R  D L  L  L L  N
Sbjct: 79  ----QLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGN 112

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 45  HDLKNANLSHLNLSGEFPN-----WLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 99
                  + H++LS           ++   + L+ L L    L       +  +  L  L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 100 DVSN-NFFQGHIPVEIGTYLPGLMEFNLSR--NAFNGSIPSSFAD-MQMLARLDIS--YN 153
           ++S  + F       + +    L E NLS   +     +  + A   + + +L++S    
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207

Query: 154 QLTGEIPERMATGCFSLEILALSN-NSLQGHIFSKKFSLTNLMTLQLDG-NNFSGEIPES 211
            L       +   C +L  L LS+   L+   F + F L  L  L L    +   E    
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 212 LSKCRRLGGLYLSD 225
           L +   L  L +  
Sbjct: 268 LGEIPTLKTLQVFG 281

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 36/214 (16%)

Query: 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFS 205
           + ++    +T  + +       S++ +  +N+ ++     +    L N+  L L GN   
Sbjct: 23  KANLKKKSVTDAVTQNELN---SIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKLH 76

Query: 206 GEIPESLSKCRRLG---GLYLSDN---HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIE 259
                 +S  + L     L L+ N    L   +   L NL  LV   +  N L+ L    
Sbjct: 77  -----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDGV 128

Query: 260 FCQLRFLRILDLSNNTIFGTLPS-CF-SPAYIEQVHLSKNKIEGRLESVIPDS-----PN 312
           F +L  L  L+L++N +  +LP   F     + ++ LS N+    L+S +P+        
Sbjct: 129 FDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQ----LQS-LPEGVFDKLTQ 182

Query: 313 LVTLDLSYNCLHGSIPNRI-DRLPQLSYLLLANN 345
           L  L L  N L  S+P+ + DRL  L Y+ L +N
Sbjct: 183 LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTY--LPGLMEFNLS 127
            +++ ++  N+ +       I     +  L +  N        +I     L  L    L+
Sbjct: 41  NSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILT 93

Query: 128 RNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN---SLQGH 183
            N    S+P+  F  +  L  L +  NQL   +P+ +     +L  L L++N   SL   
Sbjct: 94  GNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

Query: 184 IFSKKFSLTNLMTLQLDGNNFSGEIPESL-SKCRRLGGLYLSDNHLSGEIPRWLG---NL 239
           +F K   LTNL  L L  N     +PE +  K  +L  L L  N L   +P   G    L
Sbjct: 152 VFDK---LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRL 204

Query: 240 SFLVDIIMPNN 250
           + L  I + +N
Sbjct: 205 TSLQYIWLHDN 215

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF-SLTNLMTLQLDGNNFS 205
            L ++ N+L     + +      L  L L  N L G I    F   +++  LQL  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91

Query: 206 GEIPESL-SKCRRLGGLYLSDNHLSGEIPRWLG---NLSFLVDIIMPNN 250
            EI   +     +L  L L DN +S  +    G   +L+ L  + + +N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 21/126 (16%)

Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIPERMATGC 167
           IP +I  +   L    L+ N     I S   F  +  L +L++  NQLT  I      G 
Sbjct: 23  IPRDIPLHTTEL---LLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 168 FSLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNFSGEIPE----SLSKCRRLGG 220
             ++ L L  N ++     +F     L  L TL L  N  S  +       L+    L  
Sbjct: 78  SHIQELQLGENKIKEISNKMFLG---LHQLKTLNLYDNQISC-VMPGSFEHLNS---LTS 130

Query: 221 LYLSDN 226
           L L+ N
Sbjct: 131 LNLASN 136

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 46/347 (13%), Positives = 110/347 (31%), Gaps = 37/347 (10%)

Query: 51  NLSHLNLSGEFPNW-------LVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN 103
           +L  LN+S             LV    NL++L L            +    +L  L    
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 104 NFFQGHIPVEIG-----TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE 158
              +    V  G     +    L   +   +A    +P+ ++    L  L++SY  +   
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 159 IPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG---------NNFSGEIP 209
              ++   C  L+ L + +      +     +  +L  L++              + +  
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 210 ESLSK-CRRLGGLYLSDNHLSGEIPRWLG-NLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
            S+S  C +L  +      ++      +  N   +         L  + P        L 
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF-----RLCIIEPKA-PDYLTLE 418

Query: 268 ILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY-NCLHGS 326
            LD+    I            + ++ LS    +   E +   +  +  L +++       
Sbjct: 419 PLDIGFGAIVEHCKD------LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472

Query: 327 IPNRIDRLPQLSYLLLAN-NYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
           + + +     L  L + +  + +  +     +L+ ++ + +S  ++S
Sbjct: 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/217 (16%), Positives = 60/217 (27%), Gaps = 53/217 (24%)

Query: 121 LMEFNLSRNAFNGSIPSSFADM-----QMLARLDISYNQLTGEIPERMATGCFSLEILAL 175
           L + NL+         +  A +       L  ++++  QL       +         L L
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 176 SNNSLQ---GHIFSK--KFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDN 226
             NSL                  + TL+L  N  +      + E L+    +  L L   
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193

Query: 227 HLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSP 286
            L  E       L  L   +  N                L+ L+++ N       +  + 
Sbjct: 194 GLGDE------GLELLAAQLDRNRQ--------------LQELNVAYNGA--GDTAALA- 230

Query: 287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL 323
                           L     + P+L  L L +N L
Sbjct: 231 ----------------LARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 42/257 (16%), Positives = 72/257 (28%), Gaps = 31/257 (12%)

Query: 44  QHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPI-----HSHQKLAT 98
           +H L   NL+   L       L+        L L  NSL       +     H   ++ T
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 99  LDVSNNFFQGHIPVEIGTYL---PGLMEFNLSRNAFNGSIPSSFADM----QMLARLDIS 151
           L +SNN         +   L     +   +L             A      + L  L+++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 152 YNQLTGEIPERMATG---CFSLEILALSNNSLQ-------GHIFSKKFSLTNLMTLQLDG 201
           YN         +A       SLE+L L  N L          +         ++    +G
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI-EF 260
              S      LS+ +R      + N       +    L    D+              + 
Sbjct: 280 TAVSEYWSVILSEVQR------NLNSWDRARVQRHLELLLR-DLEDSRGATLNPWRKAQL 332

Query: 261 CQL-RFLRILDLSNNTI 276
            ++   +R L     + 
Sbjct: 333 LRVEGEVRALLEQLGSS 349

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 43/162 (26%), Positives = 60/162 (37%), Gaps = 23/162 (14%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
                L L  NSL             L  L +  N  Q  +P  +   L  L   NLS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86

Query: 130 AFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCF----SLEILALSNNSLQGHI 184
               S+P+  F  +  L  L ++ NQL   +P+    G F     L+ L L  N L+  +
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD----GVFDKLTQLKDLRLYQNQLKS-V 139

Query: 185 FSKKF-SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
               F  LT+L  + L  N +          C   G  YLS+
Sbjct: 140 PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSE 172

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS 169
           +P  I      L   +L  N+        F ++  L +L +  N+L   +P  +     S
Sbjct: 22  VPTGIPAQTTYL---DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 170 LEILALSNN---SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL-SKCRRLGGLYLSD 225
           L  L LS N   SL   +F K   LT L  L L+ N     +P+ +  K  +L  L L  
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDK---LTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ 133

Query: 226 NHLSGEIPR-WLGNLSFLVDIIMPNN 250
           N L   +P      L+ L  I + +N
Sbjct: 134 NQLKS-VPDGVFDRLTSLQYIWLHDN 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 48/284 (16%), Positives = 80/284 (28%), Gaps = 75/284 (26%)

Query: 61  FPNWLVENNTNLETLLLANN----SLFG-SFR-MPIH-------SHQKLAT-LDVSNNFF 106
              +L     +L   +L  N    S+   S R            +  KL T ++ S N  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
           +   P E       L  F  S +     IP+      +L+ +   +  +       +   
Sbjct: 367 E---PAEYRKMFDRLSVFPPSAH-----IPT-----ILLSLI---WFDVIKSDVMVVVNK 410

Query: 167 CFSLEILALSNN----SLQGHIFSKKFSLTNLMTL------------QLDGNNFSGEIPE 210
                ++         S+       K  L N   L              D ++     P 
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI---PP 467

Query: 211 SLSK--CRRLGGLYLSDNHLSG--------EIPRWLGNLSFL---VDIIMPNNNLEGLIP 257
            L +     +G  +    HL                 +  FL   +       N  G I 
Sbjct: 468 YLDQYFYSHIG--H----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 258 IEFCQLRFLR--ILDLSNNTIFGTLPSC---FSPAYIEQVHLSK 296
               QL+F +  I D  N+  +  L +    F P   E +  SK
Sbjct: 522 NTLQQLKFYKPYICD--NDPKYERLVNAILDFLPKIEENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	543
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.55

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-53  Score=456.67  Aligned_cols=502  Identities=30%  Similarity=0.415  Sum_probs=386.2

Q ss_pred             CCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCC
Q 040468           18 TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLA   97 (543)
Q Consensus        18 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~   97 (543)
                      ....+|++|++++|.+.+..|. +.++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|..  .+++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence            4455789999999998887776 8889999999999999887777664 88999999999999887777654  889999


Q ss_pred             EEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccC
Q 040468           98 TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN  177 (543)
Q Consensus        98 ~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  177 (543)
                      +|++++|.+++.+|..++..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|...+..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            99999999988888888876799999999999999889999999999999999999998888988777899999999999


Q ss_pred             CcCCCcCcccccCCC-CcCEEeCCCCccCccCchhhhc--CCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468          178 NSLQGHIFSKKFSLT-NLMTLQLDGNNFSGEIPESLSK--CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       178 n~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      |.+.+..+..+..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.+....|..+..+++|+.|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            998877778888777 9999999999998777777766  7899999999999988889999999999999999999998


Q ss_pred             cCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468          255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR  333 (543)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~  333 (543)
                      ..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++|++++|++++..|.+++.
T Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            8899999999999999999999877766554 899999999999999888888999999999999999999999999999


Q ss_pred             CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCC--------CCCCCCCCCCCc
Q 040468          334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVA--------PTSSSCGRASGY  405 (543)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~c~~~~~~  405 (543)
                      +++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|+.+..............        .....++.....
T Consensus       513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999988766543221110000        000000000000


Q ss_pred             cccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhh
Q 040468          406 ASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQI  485 (543)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l  485 (543)
                      .               ....+.....+..+.......  .....+... +..  ....+++|++|||++|++++.+|..+
T Consensus       593 ~---------------~~~~~~~~~~~~~l~~~~~~~--l~~~~~~g~-~~~--~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          593 L---------------LEFQGIRSEQLNRLSTRNPCN--ITSRVYGGH-TSP--TFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             E---------------EECTTCCGGGGGGGGGTCCSC--TTSCEEEEE-CCC--SCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             c---------------cccccccchhhhccccccccc--cccceeccc-Cch--hhhccccccEEECcCCcccccCCHHH
Confidence            0               000000000000000000000  000000000 000  00114567777777777776677777


Q ss_pred             hcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468          486 GYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR  543 (543)
Q Consensus       486 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~  543 (543)
                      +.+++|+.|+|++|.+++.+|..|+.+++|+.||+++|++++.+|..+..+++|++|+
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            7777777777777777777777777777777777777777777777777777766653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-50  Score=437.62  Aligned_cols=476  Identities=31%  Similarity=0.437  Sum_probs=384.0

Q ss_pred             CCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCC-CC
Q 040468           17 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSH-QK   95 (543)
Q Consensus        17 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~   95 (543)
                      +....+|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..   .+++|++|++++|++.+..|..+... ++
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~  295 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT  295 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence            555668999999999999999999999999999999999998877763   78999999999999988888888765 99


Q ss_pred             CCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh-hcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           96 LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        96 L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      |++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+....++|++|+
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred             CCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence            999999999999888888877 899999999999998777765 999999999999999998888888776334999999


Q ss_pred             ccCCcCCCcCcccccC--CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468          175 LSNNSLQGHIFSKKFS--LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL  252 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  252 (543)
                      +++|.+.+..+..+..  +++|++|++.+|.+.+..|..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l  454 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML  454 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence            9999988777777666  78999999999999988999999999999999999999888899999999999999999999


Q ss_pred             cccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468          253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI  331 (543)
Q Consensus       253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  331 (543)
                      .+..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|++++..+..+..+++|++|++++|++++.+|..+
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            999999999999999999999999977766554 8999999999999998888889999999999999999999999999


Q ss_pred             CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCc-c---------------------cccCCCCcccCCCCCCCC
Q 040468          332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN-L---------------------SGHIPPCLVNTSLSEGHD  389 (543)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~---------------------~~~~~~~~~~~~~~~~~~  389 (543)
                      ..+++|+.|++++|++++.+|..+..+..+..+++..+. +                     .+..+..+..+...... 
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  613 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC-  613 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS-
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc-
Confidence            999999999999999998888877665554444333211 0                     00111111111100000 


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCce
Q 040468          390 EPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSM  467 (543)
Q Consensus       390 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L  467 (543)
                         .   .......+.                             .+........+..+.+....+....+  ...+++|
T Consensus       614 ---~---l~~~~~~g~-----------------------------~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          614 ---N---ITSRVYGGH-----------------------------TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ---C---TTSCEEEEE-----------------------------CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ---c---cccceeccc-----------------------------CchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence               0   000000000                             00000000011111111111110000  0116899


Q ss_pred             eEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc
Q 040468          468 FGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ  532 (543)
Q Consensus       468 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  532 (543)
                      ++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.||+++|++++.+|+.
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-47  Score=401.35  Aligned_cols=454  Identities=20%  Similarity=0.175  Sum_probs=308.7

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      .+++|+++++.+++..|..+.++++|++|++++|.+.+..|.. +.++++|++|++++|++.+..|.++..+++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            7999999999999877888999999999999999998655655 589999999999999998888999999999999999


Q ss_pred             CCCccccCC-chhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC--EEEccCC
Q 040468          102 SNNFFQGHI-PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE--ILALSNN  178 (543)
Q Consensus       102 s~~~i~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~--~L~l~~n  178 (543)
                      ++|.++ .+ +..+ ..+++|++|++++|.+.+.....+..+++|++|++++|.+. .++...+..+++|+  .|++++|
T Consensus       113 ~~n~i~-~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          113 IQTGIS-SIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             TTSCCS-CGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTC
T ss_pred             cccCcc-cCCcchh-ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCC
Confidence            999998 44 4444 44899999999999998644445556999999999999998 56556666799999  8999999


Q ss_pred             cCCCcCcccccCCC----------------------------------------------------CcCEEeCCCCccCc
Q 040468          179 SLQGHIFSKKFSLT----------------------------------------------------NLMTLQLDGNNFSG  206 (543)
Q Consensus       179 ~~~~~~~~~l~~l~----------------------------------------------------~L~~L~l~~~~~~~  206 (543)
                      .+.+..+..+. ..                                                    +|+.+++.+|.+.+
T Consensus       190 ~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          190 DIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             ccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            88765544432 23                                                    34555555555554


Q ss_pred             cCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC--CC
Q 040468          207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS--CF  284 (543)
Q Consensus       207 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~  284 (543)
                      ..+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.  +.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            44444555666666666666655 4455555666666666666666555555555666666666666655433222  22


Q ss_pred             CcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccch-hhhCCCCC
Q 040468          285 SPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPV-QLCQLKEV  361 (543)
Q Consensus       285 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L  361 (543)
                      .+++|+.|++++|.+++..  +..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+. .+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            3556666666666665443  44455566666666666666555555566666666666666665544332 35556666


Q ss_pred             CEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCC
Q 040468          362 QLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPP  441 (543)
Q Consensus       362 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (543)
                      ++|++++|.+.+..|..+..++                 .+.                                      
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~-----------------~L~--------------------------------------  452 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLP-----------------ALQ--------------------------------------  452 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCT-----------------TCC--------------------------------------
T ss_pred             CEEECCCCccCCcCHHHHhCCC-----------------CCC--------------------------------------
Confidence            6666666665544443333322                 111                                      


Q ss_pred             CCCccceeeeccCCcc-----cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCC
Q 040468          442 MGKEETIQFTTKNMSY-----YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIE  516 (543)
Q Consensus       442 ~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~  516 (543)
                           .+.+....+..     ......+++|++|++++|++++..|..|..+++|++|+|++|++++..|+++..+++| 
T Consensus       453 -----~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-  526 (606)
T 3t6q_A          453 -----HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-  526 (606)
T ss_dssp             -----EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred             -----EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence                 11111111110     0011226778888888888876667777888888888888888887777788888888 


Q ss_pred             eeeCCCCcCcccCCccccccCcCCcC
Q 040468          517 SLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       517 ~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      .|++++|++++..|+.+..+++|+.|
T Consensus       527 ~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          527 YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             EEECcCCcccccCHhhcccCCCCCEE
Confidence            88888888887777777777777665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-45  Score=391.19  Aligned_cols=451  Identities=20%  Similarity=0.187  Sum_probs=368.4

Q ss_pred             CCCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCC
Q 040468           15 NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQ   94 (543)
Q Consensus        15 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~   94 (543)
                      ..+....+|++|+|++|.+.+..|..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..+..+..++
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCC
Confidence            35566668999999999999878888999999999999999998666665 58999999999999999887778899999


Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC--EEecccccccccCchHhhhC------
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA--RLDISYNQLTGEIPERMATG------  166 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~------  166 (543)
                      +|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+  .|++++|.+.+ ++...+..      
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L  207 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSL  207 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEE
T ss_pred             cccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc-cChhHhhhcccccc
Confidence            9999999999998422233334 89999999999999977788899999999  89999998874 33222221      


Q ss_pred             -------------------------------------------C--CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468          167 -------------------------------------------C--FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG  201 (543)
Q Consensus       167 -------------------------------------------~--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  201 (543)
                                                                 +  .+++.|++++|.+.+..+..+..+++|++|++++
T Consensus       208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  287 (606)
T 3t6q_A          208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA  287 (606)
T ss_dssp             ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred             ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence                                                       1  1577888888888877777788999999999999


Q ss_pred             CccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccCC
Q 040468          202 NNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGTL  280 (543)
Q Consensus       202 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~  280 (543)
                      |.++ .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..
T Consensus       288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            9988 67778899999999999999998777888999999999999999887544 445889999999999999987653


Q ss_pred             --C-CCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc-cCCCCCCCCEEEccCcccccccchhhh
Q 040468          281 --P-SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLC  356 (543)
Q Consensus       281 --~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~  356 (543)
                        + .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+..+.
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              3 344589999999999999888888899999999999999999866544 488999999999999999888888899


Q ss_pred             CCCCCCEEeCCCCcccccCC---CCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccccc
Q 040468          357 QLKEVQLIDLSHNNLSGHIP---PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALD  433 (543)
Q Consensus       357 ~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (543)
                      .+++|++|++++|++.+...   ..+..++                 .+.......+                       
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-----------------~L~~L~Ls~n-----------------------  486 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLG-----------------RLEILVLSFC-----------------------  486 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCT-----------------TCCEEECTTS-----------------------
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCC-----------------CccEEECCCC-----------------------
Confidence            99999999999999875221   1222222                 1111111111                       


Q ss_pred             ccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468          434 YVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN  511 (543)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~  511 (543)
                                          .+....  ....+++|++|++++|++++..|..+..+++| +|++++|.+++..|..+..
T Consensus       487 --------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~  545 (606)
T 3t6q_A          487 --------------------DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI  545 (606)
T ss_dssp             --------------------CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred             --------------------ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence                                110000  01126899999999999998889999999999 9999999999888999999


Q ss_pred             cCCCCeeeCCCCcCcccCC
Q 040468          512 LKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       512 l~~L~~L~l~~n~i~~~~~  530 (543)
                      +++|+.|++++|++.+..+
T Consensus       546 l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          546 LSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHTSSEEECTTCCEECSGG
T ss_pred             CCCCCEEeCCCCCccccCC
Confidence            9999999999999987544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.8e-44  Score=386.01  Aligned_cols=518  Identities=18%  Similarity=0.145  Sum_probs=335.6

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .++++|+++++.+++..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..+.+|.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            48999999999999877778999999999999999998655554 58999999999999999877777899999999999


Q ss_pred             cCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhh--CCCCCCEEEccCC
Q 040468          101 VSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT--GCFSLEILALSNN  178 (543)
Q Consensus       101 ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~n  178 (543)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+.  .+++|++|++++|
T Consensus       104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCC
Confidence            9999998 555444444999999999999999887888999999999999999998 44444332  3688999999999


Q ss_pred             cCCCcCcccccCC---------------------------CCcCEEeCCCCccCccCchhhhcCCC--CCEEEccCCcCC
Q 040468          179 SLQGHIFSKKFSL---------------------------TNLMTLQLDGNNFSGEIPESLSKCRR--LGGLYLSDNHLS  229 (543)
Q Consensus       179 ~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~  229 (543)
                      .+.+..+..+..+                           ++|+.|++++|.+.+..+..+..++.  |+.|++++|.+.
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            8887665544433                           45677777777777666667766654  888888888887


Q ss_pred             CcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccC-----CC-----CCCCcccccEEEcCCCcc
Q 040468          230 GEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT-----LP-----SCFSPAYIEQVHLSKNKI  299 (543)
Q Consensus       230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~-----~~~~~~~L~~L~l~~~~~  299 (543)
                      ...+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+.     .+     .+..+++|+.|++++|.+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence            66677788888888888888888877777778888888888876543321     11     222367788888888877


Q ss_pred             ccccCCCCCCCCCccEEEcccccccc--ccCccCCC--CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468          300 EGRLESVIPDSPNLVTLDLSYNCLHG--SIPNRIDR--LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI  375 (543)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  375 (543)
                      .+..+..+..+++|++|++++|.+..  .....+..  .++|+.|++++|++++..+..+..+++|++|++++|.+.+.+
T Consensus       342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred             CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence            77666667777777777777665321  11111211  134555555555555444555555555555555555554444


Q ss_pred             CC-CcccCCCCC------CCCCC-CCCCCCCCCCCCCcccccccccc-CCccCCCCCCCCCCcccccc-----c-CCCCC
Q 040468          376 PP-CLVNTSLSE------GHDEP-VAPTSSSCGRASGYASSYTKTAL-NATTPFSSSCGRGYPYALDY-----V-GSRTP  440 (543)
Q Consensus       376 ~~-~~~~~~~~~------~~~~~-~~~~~~~c~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~-~~~~~  440 (543)
                      |+ .+..++...      +.... .......|+.+.......+.-.. .........+..-....++.     . .....
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  501 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE  501 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence            32 222221110      00000 00011122222222221111000 00000000000010111100     0 01122


Q ss_pred             CCCCccceeeeccCCccccc----------ccccCceeEEEcccCccccccC-hhhhcccccCeeeCcCCccccccChhh
Q 040468          441 PMGKEETIQFTTKNMSYYYQ----------GRILTSMFGIDLSCNKLTGEIP-TQIGYLTKIHALNLSHNNLTGTIPTTF  509 (543)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~i~~~~~~~~  509 (543)
                      ....++.+.+....+.....          ...+++|++|+|++|+++ .+| ..|..+++|++|++++|.+++..+..|
T Consensus       502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence            23344444444444333211          223677888888888888 454 457888888888888888886666667


Q ss_pred             hccCCCCeeeCCCCcCcccCCcccc-ccCcCCcC
Q 040468          510 SNLKQIESLDLSYNLLHGKIPSQLT-VLTTLAVF  542 (543)
Q Consensus       510 ~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~l  542 (543)
                      ..+++|+.|++++|++++..+..+. .+++|++|
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            7888888888888888866666565 56666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-44  Score=388.10  Aligned_cols=505  Identities=20%  Similarity=0.144  Sum_probs=334.3

Q ss_pred             CCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC
Q 040468           17 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL   96 (543)
Q Consensus        17 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L   96 (543)
                      +....+|++|+++++.+.+..|..+.++++|++|++++|.++ .+|...+.++++|++|++++|++.+..+.++..+++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            344458999999999998888888889999999999999887 5666556889999999999998877777888899999


Q ss_pred             CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhc--CCCCCCEEecccccccccCchHhhhC--------
Q 040468           97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA--DMQMLARLDISYNQLTGEIPERMATG--------  166 (543)
Q Consensus        97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~--------  166 (543)
                      ++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..+.. +..        
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  201 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLF  201 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSC-CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEE
T ss_pred             CEEECCCCcccccCchhhcc-cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhh
Confidence            99999999887544444444 88888888888888766555544  4477888888887766332221 111        


Q ss_pred             -------------------CCC--------------------------CCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468          167 -------------------CFS--------------------------LEILALSNNSLQGHIFSKKFSLTNLMTLQLDG  201 (543)
Q Consensus       167 -------------------~~~--------------------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  201 (543)
                                         .++                          |++|++++|.+.+..+..+..+++|++|++++
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                               123                          55555555554444444455555555555555


Q ss_pred             CccCccCchhhhcCCCCCEEEccCCcCCC-----ccc----ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          202 NNFSGEIPESLSKCRRLGGLYLSDNHLSG-----EIP----RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       202 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      |.+.+..+..+..+++|+.++++++....     ..|    ..+..+++|+.+++++|.+.+..+..+..+++|+.|+++
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  361 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS  361 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence            55554444555555555555555433221     111    145566777777777777776666667777777777777


Q ss_pred             CCcCcc--CCCCCCC---cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcc
Q 040468          273 NNTIFG--TLPSCFS---PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNY  346 (543)
Q Consensus       273 ~~~~~~--~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~  346 (543)
                      +|.+..  .....+.   .++|+.|++++|.+++..+..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|+
T Consensus       362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            765321  1111111   2578888888888887777888889999999999999876554 678889999999999998


Q ss_pred             cccccchhhhCCCCCCEEeCCCCccc--ccCCCCcccCCCCC------CCCCCCCC-CCCCCCCCCCccccccccccCCc
Q 040468          347 IEGEIPVQLCQLKEVQLIDLSHNNLS--GHIPPCLVNTSLSE------GHDEPVAP-TSSSCGRASGYASSYTKTALNAT  417 (543)
Q Consensus       347 i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~~------~~~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~  417 (543)
                      +++..+..|..+++|+.|++++|.+.  +.+|..+..++...      +......+ ....+..+.......+.-...  
T Consensus       442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~--  519 (680)
T 1ziw_A          442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--  519 (680)
T ss_dssp             EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG--
T ss_pred             cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc--
Confidence            88777777888888888888888775  34555554443221      11111111 123344443333333221000  


Q ss_pred             cCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc--ccccCceeEEEcccCccccccChhhhcccccCeee
Q 040468          418 TPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ--GRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALN  495 (543)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~  495 (543)
                        .......+       ..........++.+.+....+...-.  ...+++|++|++++|+++...+..|..+++|++|+
T Consensus       520 --~~~~~~~~-------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  590 (680)
T 1ziw_A          520 --WKHANPGG-------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN  590 (680)
T ss_dssp             --GSTTSTTS-------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --chhhccCC-------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence              00000000       00112233445555555554443322  23378999999999999954556689999999999


Q ss_pred             CcCCccccccChhhh-ccCCCCeeeCCCCcCcccCC--ccccc
Q 040468          496 LSHNNLTGTIPTTFS-NLKQIESLDLSYNLLHGKIP--SQLTV  535 (543)
Q Consensus       496 ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~--~~~~~  535 (543)
                      |++|.+++..+..+. .+++|+.|++++|++.+..+  .+|..
T Consensus       591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~  633 (680)
T 1ziw_A          591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN  633 (680)
T ss_dssp             CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEEC
T ss_pred             CCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHH
Confidence            999999988887787 89999999999999988665  44443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.6e-45  Score=386.91  Aligned_cols=449  Identities=18%  Similarity=0.141  Sum_probs=304.1

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .++++|+++++.+.+..+..+.++++|++|++++|.+++..|.. +.++++|++|++++|++.+..|.+|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            48999999999999777778999999999999999998554544 58999999999999999888899999999999999


Q ss_pred             cCCCccccCCc-hhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCC----CCEEE
Q 040468          101 VSNNFFQGHIP-VEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS----LEILA  174 (543)
Q Consensus       101 ls~~~i~~~~~-~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~----L~~L~  174 (543)
                      +++|.+. .++ ..+.. +++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+. .+..+.+    +++++
T Consensus       111 L~~n~l~-~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          111 AVETKLA-SLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLD  187 (606)
T ss_dssp             CTTSCCC-CSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEE
T ss_pred             ccCCccc-cccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceee
Confidence            9999998 444 44444 9999999999999985 5688999999999999999998843333 2222433    45899


Q ss_pred             ccCCcCCCcCcccccCCCCcCEEeCCCCccCc-cCchh------------------------------------------
Q 040468          175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG-EIPES------------------------------------------  211 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~------------------------------------------  211 (543)
                      +++|.+.......+. ..+|+.|++++|.+.+ ..+..                                          
T Consensus       188 l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  266 (606)
T 3vq2_A          188 MSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF  266 (606)
T ss_dssp             CTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred             ccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence            999988865544444 3478888888876541 12222                                          


Q ss_pred             --------------hhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468          212 --------------LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       212 --------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  277 (543)
                                    +..+++|+.++++++.+. ..+ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|...
T Consensus       267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~  341 (606)
T 3vq2_A          267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGS  341 (606)
T ss_dssp             EECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSC
T ss_pred             eccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCc
Confidence                          333445555555555554 222 4455555555555555552 333 23 5555555555555333


Q ss_pred             cCCCCCCCcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccc-hh
Q 040468          278 GTLPSCFSPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP-VQ  354 (543)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~  354 (543)
                      +.. ....+++|+.|++++|.+++..  +..+..+++|++|++++|.++ ..|..+..+++|+.|++++|++.+..+ ..
T Consensus       342 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          342 ISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             cch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhh
Confidence            222 2223555555555555554432  333445555555555555555 344555555556666666555554444 34


Q ss_pred             hhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccc
Q 040468          355 LCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY  434 (543)
Q Consensus       355 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (543)
                      +..+++|++|++++|.+.+..|..+..++                                                   
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------------  448 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLT---------------------------------------------------  448 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCT---------------------------------------------------
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCC---------------------------------------------------
Confidence            55555566666665555544443333222                                                   


Q ss_pred             cCCCCCCCCCccceeeeccCCcc---cccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhc
Q 040468          435 VGSRTPPMGKEETIQFTTKNMSY---YYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSN  511 (543)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~  511 (543)
                               .++.+.+....+..   -.....+++|++|++++|++++..|..+..+++|++|+|++|++++..|..|..
T Consensus       449 ---------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          449 ---------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             ---------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             ---------CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence                     11111111111111   001122689999999999999777888999999999999999999888999999


Q ss_pred             cCCCCeeeCCCCcCcccCCccccccC-cCCcC
Q 040468          512 LKQIESLDLSYNLLHGKIPSQLTVLT-TLAVF  542 (543)
Q Consensus       512 l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~l  542 (543)
                      +++|+.|++++|+++ .+|..+..++ +|++|
T Consensus       520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF  550 (606)
T ss_dssp             CTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred             CCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence            999999999999999 6777788886 57765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.3e-45  Score=387.15  Aligned_cols=441  Identities=20%  Similarity=0.184  Sum_probs=315.7

Q ss_pred             CCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCC
Q 040468           16 SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK   95 (543)
Q Consensus        16 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~   95 (543)
                      .+....+|++|++++|.+++..|..+.++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..++.+++
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  129 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLIT  129 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCC
Confidence            4556668999999999999777888999999999999999998655665 589999999999999998887788999999


Q ss_pred             CCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC----EEecccccccccCchHhhhCCCCC
Q 040468           96 LATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA----RLDISYNQLTGEIPERMATGCFSL  170 (543)
Q Consensus        96 L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~L  170 (543)
                      |++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+++|+    +|++++|.+. .++...+... +|
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L  206 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KL  206 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EE
T ss_pred             CCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-ee
Confidence            9999999999874 46777776 89999999999999877777676665544    7888888887 6666655533 67


Q ss_pred             CEEEccCCcCC----------------------------------------------------------CcCcccccCCC
Q 040468          171 EILALSNNSLQ----------------------------------------------------------GHIFSKKFSLT  192 (543)
Q Consensus       171 ~~L~l~~n~~~----------------------------------------------------------~~~~~~l~~l~  192 (543)
                      ++|++++|.+.                                                          +..+ .+..++
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~  285 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLA  285 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGT
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCC
Confidence            77777776543                                                          1111 144567


Q ss_pred             CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      +|+.+++.++.+. ..+ .+..+++|++|++++|.+. ..|. + .+++|+.|++++|...+..  .+..+++|+.|+++
T Consensus       286 ~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          286 NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS  358 (606)
T ss_dssp             TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred             CCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence            7777777777765 344 5667777888888777773 4553 3 6777777777777443322  44566777777777


Q ss_pred             CCcCccCC---CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcccc
Q 040468          273 NNTIFGTL---PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNYIE  348 (543)
Q Consensus       273 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~i~  348 (543)
                      +|.+.+..   ..+..+++|+.|++++|.+++.. ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|+++
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence            77665441   22223566777777777766533 556666777777777777765544 46666777777777777776


Q ss_pred             cccchhhhCCCCCCEEeCCCCccccc-CCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468          349 GEIPVQLCQLKEVQLIDLSHNNLSGH-IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG  427 (543)
Q Consensus       349 ~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (543)
                      +..|..+.++++|++|++++|.+.+. .|..+..++...                 ......+                 
T Consensus       438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-----------------~L~Ls~n-----------------  483 (606)
T 3vq2_A          438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT-----------------FLDLSKC-----------------  483 (606)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------EEECTTS-----------------
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC-----------------EEECCCC-----------------
Confidence            66666667777777777777776652 344443332111                 1111110                 


Q ss_pred             CcccccccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc
Q 040468          428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI  505 (543)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~  505 (543)
                                                .+....  ....+++|++|++++|++++..|..+..+++|++|+|++|+++ .+
T Consensus       484 --------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~  536 (606)
T 3vq2_A          484 --------------------------QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS  536 (606)
T ss_dssp             --------------------------CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred             --------------------------cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence                                      000000  0011689999999999999777999999999999999999999 77


Q ss_pred             ChhhhccC-CCCeeeCCCCcCcccCC
Q 040468          506 PTTFSNLK-QIESLDLSYNLLHGKIP  530 (543)
Q Consensus       506 ~~~~~~l~-~L~~L~l~~n~i~~~~~  530 (543)
                      |..+..++ +|+.|++++|++.+..+
T Consensus       537 p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CHhHhhhcccCcEEEccCCCcccCCc
Confidence            77799997 69999999999987544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=379.35  Aligned_cols=439  Identities=18%  Similarity=0.161  Sum_probs=289.3

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      ++++|+++++.+++..+..+..+++|++|++++|.+++ ++...+.++++|++|++++|++.+..+.+|.++++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            79999999999997777789999999999999999984 44444689999999999999998888899999999999999


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC----CEEEcc
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL----EILALS  176 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L----~~L~l~  176 (543)
                      ++|.+. .++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+. .++...+..+++|    +.++++
T Consensus       108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccC
Confidence            999998 5555334449999999999999986 46899999999999999999998 4444444446677    899999


Q ss_pred             CCcCCCcCcccccCCCCcCEEeCCCCcc----------------------------------------------------
Q 040468          177 NNSLQGHIFSKKFSLTNLMTLQLDGNNF----------------------------------------------------  204 (543)
Q Consensus       177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~----------------------------------------------------  204 (543)
                      +|.+....+..+... +|+.|++.++..                                                    
T Consensus       186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            999887666555444 688887766521                                                    


Q ss_pred             ------CccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          205 ------SGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       205 ------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                            .+..+..+..+++|+.++++++.+. ..|..+..+ +|+.|++++|.+... |.  ..+++|+.|++++|.+..
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccc
Confidence                  1122333444555555555555554 344444444 555555555555522 22  244555555555555443


Q ss_pred             CCCCCCCcccccEEEcCCCcccccc--CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccc-hhh
Q 040468          279 TLPSCFSPAYIEQVHLSKNKIEGRL--ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP-VQL  355 (543)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~l  355 (543)
                      ..+. ..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+
T Consensus       340 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          340 AFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             BCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             cccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhh
Confidence            3322 33555566666555554332  23344555566666666555532 2225555556666666655554333 344


Q ss_pred             hCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccccccc
Q 040468          356 CQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYV  435 (543)
Q Consensus       356 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (543)
                      ..+++|++|++++|.+.+..|..+..++                 .+.                                
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------------~L~--------------------------------  448 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLS-----------------SLE--------------------------------  448 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCT-----------------TCC--------------------------------
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCC-----------------cCc--------------------------------
Confidence            5555566666666555544333332222                 111                                


Q ss_pred             CCCCCCCCCccceeeeccCCcc-c--ccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhcc
Q 040468          436 GSRTPPMGKEETIQFTTKNMSY-Y--YQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL  512 (543)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l  512 (543)
                                 .+.+....+.. .  .....+++|++|++++|++++..|..+..+++|++|+|++|.+++..|..|..+
T Consensus       449 -----------~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          449 -----------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             -----------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence                       11111111000 0  001126788888888888886667778888888888888888887777778888


Q ss_pred             CCCCeeeCCCCcCcccCCc
Q 040468          513 KQIESLDLSYNLLHGKIPS  531 (543)
Q Consensus       513 ~~L~~L~l~~n~i~~~~~~  531 (543)
                      ++|+.|++++|++++.+|.
T Consensus       518 ~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCCEEECCSSCBCCCTTT
T ss_pred             cCCcEEEecCCcccCCCcc
Confidence            8888888888888776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=381.12  Aligned_cols=490  Identities=19%  Similarity=0.146  Sum_probs=291.4

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .++++|+|++|.+++..+..+.++++|++|++++|...+.++...+.++++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            38999999999999878888999999999999999766677555579999999999999999888899999999999999


Q ss_pred             cCCCccccCCchh-hhcCCCCCcEEEcCCCcCccCCc-hhhcCCCCCCEEecccccccccCchHhhhCC--CCCCEEEcc
Q 040468          101 VSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFNGSIP-SSFADMQMLARLDISYNQLTGEIPERMATGC--FSLEILALS  176 (543)
Q Consensus       101 ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~--~~L~~L~l~  176 (543)
                      +++|.+.+.++.. .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+.. +  ++|+.|+++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEEC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECC
Confidence            9999998655554 34449999999999999986544 67999999999999999998555554433 4  789999999


Q ss_pred             CCcCCCcCcccccCCCC------cCEEeCCCCccCccCchhhhcC---CCCCEEEccCCc---------CCCcccccccC
Q 040468          177 NNSLQGHIFSKKFSLTN------LMTLQLDGNNFSGEIPESLSKC---RRLGGLYLSDNH---------LSGEIPRWLGN  238 (543)
Q Consensus       177 ~n~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~---------~~~~~~~~l~~  238 (543)
                      +|.+....+..+..+++      |+.|++++|.+....+..+...   ..++.+.+..+.         +.......+..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            99988766666655554      9999999987765544433321   233444433111         11111111221


Q ss_pred             --CCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccE
Q 040468          239 --LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVT  315 (543)
Q Consensus       239 --~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  315 (543)
                        .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              13444444444444444444444444444444444444443332222 444444444444444444444444444444


Q ss_pred             EEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC---CCCCCCCC
Q 040468          316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL---SEGHDEPV  392 (543)
Q Consensus       316 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~~~~  392 (543)
                      |++++|.+....+..+..+++|+.|++++|.+++ +    ..+++|+.|++++|++. .+|.....+..   ..+.....
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL  416 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-cccccccccceeecccCccccC
Confidence            4444444443333344444444444444444431 1    11344444444444443 22221111110   00000000


Q ss_pred             CC--CCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccc-------ccccc
Q 040468          393 AP--TSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYY-------YQGRI  463 (543)
Q Consensus       393 ~~--~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  463 (543)
                      ..  ....++.+.......+.-.         .+....         .....+.++.+......+...       .....
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~---------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFS---------SCSGDQ---------TPSENPSLEQLFLGENMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCC---------CCCSSS---------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred             chhhhhhcCCccceeeCCCCccc---------cccccc---------ccccCCccccccCCCCccccccccccchhhhcC
Confidence            00  0011222222222221100         000000         000011111111111111100       00112


Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccC
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLT  537 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~  537 (543)
                      +++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+.  ++|+.|++++|++++..|+.+..+.
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~  550 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS  550 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence            68899999999999966677788999999999999999876666655  8899999999999988887765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-43  Score=372.28  Aligned_cols=419  Identities=18%  Similarity=0.161  Sum_probs=282.4

Q ss_pred             CCCCCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCC
Q 040468           16 SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQK   95 (543)
Q Consensus        16 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~   95 (543)
                      .+....+|++|++++|++.+..+..+.++++|++|++++|.+++..+. .+.++++|++|++++|++.+..+..++.+++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccccccccccccCCCcccccccc
Confidence            455666899999999999977777889999999999999999854444 4689999999999999997777667999999


Q ss_pred             CCEEEcCCCcccc-CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCC----CEEecccccccccCchHhhhCCCCC
Q 040468           96 LATLDVSNNFFQG-HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQML----ARLDISYNQLTGEIPERMATGCFSL  170 (543)
Q Consensus        96 L~~L~ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~~~L  170 (543)
                      |++|++++|.+.. .+|..+.. +++|++|++++|.+++..+..+..+++|    +++++++|.+. .++...+... +|
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L  202 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RL  202 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EE
T ss_pred             ccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cc
Confidence            9999999999884 46777777 8999999999999987777788888888    89999999887 4444444422 56


Q ss_pred             CEEEccCCc----------------------------------------------------------CCCcCcccccCCC
Q 040468          171 EILALSNNS----------------------------------------------------------LQGHIFSKKFSLT  192 (543)
Q Consensus       171 ~~L~l~~n~----------------------------------------------------------~~~~~~~~l~~l~  192 (543)
                      +.|++++|.                                                          +.+..+..+..++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence            666665541                                                          1122233445567


Q ss_pred             CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      +|+.|++.++.+. ..|..+..+ +|++|++++|.+. ..|.  ..+++|+.+++++|.+....+.  ..+++|+.|+++
T Consensus       283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~  355 (570)
T 2z63_A          283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS  355 (570)
T ss_dssp             TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred             cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence            7888888777776 456556666 7777777777766 3332  3456666666666665544332  455666666666


Q ss_pred             CCcCccCC---CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC-ccCCCCCCCCEEEccCcccc
Q 040468          273 NNTIFGTL---PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP-NRIDRLPQLSYLLLANNYIE  348 (543)
Q Consensus       273 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~i~  348 (543)
                      +|.+.+..   ..+..+++|+.|++++|.+.+.... +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            66555331   1122355666666666666544433 5556666666666666654333 34556666666666666665


Q ss_pred             cccchhhhCCCCCCEEeCCCCccc-ccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468          349 GEIPVQLCQLKEVQLIDLSHNNLS-GHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG  427 (543)
Q Consensus       349 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (543)
                      +..+..+.++++|++|++++|.+. +.+|..+..++...                 ......+                 
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~-----------------~L~l~~n-----------------  480 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-----------------FLDLSQC-----------------  480 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------EEECTTS-----------------
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-----------------EEECCCC-----------------
Confidence            555555666666666666666654 23443333322111                 0000000                 


Q ss_pred             CcccccccCCCCCCCCCccceeeeccCCcccc--cccccCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc
Q 040468          428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYY--QGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI  505 (543)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~  505 (543)
                                                .+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus       481 --------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          481 --------------------------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             --------------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             --------------------------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence                                      000000  0011679999999999999766778999999999999999999776


Q ss_pred             C
Q 040468          506 P  506 (543)
Q Consensus       506 ~  506 (543)
                      |
T Consensus       535 ~  535 (570)
T 2z63_A          535 P  535 (570)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-44  Score=378.45  Aligned_cols=414  Identities=19%  Similarity=0.268  Sum_probs=340.2

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCccc------c------cCChhhhh---------------------
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLS------G------EFPNWLVE---------------------   67 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~---------------------   67 (543)
                      .+++.|+|+++++.|.+|..+.++++|++|+|++|.+.      +      .+|.....                     
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            37999999999999999999999999999999999651      1      11111000                     


Q ss_pred             ------------------cCCCCcEEEcc--CCcccccCCCCCcCCCCCCEEEcCCCccccC-----------------C
Q 040468           68 ------------------NNTNLETLLLA--NNSLFGSFRMPIHSHQKLATLDVSNNFFQGH-----------------I  110 (543)
Q Consensus        68 ------------------~l~~L~~L~L~--~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-----------------~  110 (543)
                                        ....++.+.+.  +|++++ +|..+.++++|++|++++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              00112222222  456767 788899999999999999999864                 8


Q ss_pred             chhhh--cCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccc-cCchHhhh-----CCCCCCEEEccCCcCC
Q 040468          111 PVEIG--TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTG-EIPERMAT-----GCFSLEILALSNNSLQ  181 (543)
Q Consensus       111 ~~~~~--~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~-----~~~~L~~L~l~~n~~~  181 (543)
                      |..+.  . +++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..     .+++|++|++++|.+.
T Consensus       240 p~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          240 TEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             chhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            88887  6 8999999999999998999999999999999999998 886 67877654     2389999999999998


Q ss_pred             CcCcc--cccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC-CcEEEccCCcccccCcc
Q 040468          182 GHIFS--KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF-LVDIIMPNNNLEGLIPI  258 (543)
Q Consensus       182 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~  258 (543)
                       ..+.  .+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .+|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             5666  78999999999999999987778 8889999999999999988 77888899999 999999999998 5576


Q ss_pred             cccCCC--CCcEEEccCCcCccCCCCCC--------CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC
Q 040468          259 EFCQLR--FLRILDLSNNTIFGTLPSCF--------SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP  328 (543)
Q Consensus       259 ~l~~l~--~L~~L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  328 (543)
                      .+....  +|+.|++++|.+.+..+..+        ..++|+.|++++|.++..+...+..+++|++|++++|.++ .+|
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence            766544  89999999999987655433        3568999999999998666556667899999999999999 555


Q ss_pred             cc-CCCC-------CCCCEEEccCcccccccchhhh--CCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCC
Q 040468          329 NR-IDRL-------PQLSYLLLANNYIEGEIPVQLC--QLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSS  398 (543)
Q Consensus       329 ~~-l~~~-------~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (543)
                      .. +...       ++|+.|++++|+++ .+|..+.  .+++|+.|++++|++.+ +|..+..                 
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-----------------  534 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-----------------  534 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-----------------
T ss_pred             HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc-----------------
Confidence            43 3333       28999999999998 7787776  89999999999999975 6655443                 


Q ss_pred             CCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc------
Q 040468          399 CGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL------  472 (543)
Q Consensus       399 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l------  472 (543)
                                                                                       +++|++|++      
T Consensus       535 -----------------------------------------------------------------l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          535 -----------------------------------------------------------------SSTLKGFGIRNQRDA  549 (636)
T ss_dssp             -----------------------------------------------------------------CSSCCEEECCSCBCT
T ss_pred             -----------------------------------------------------------------CCCCCEEECCCCccc
Confidence                                                                             568999999      


Q ss_pred             ccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCccc
Q 040468          473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  528 (543)
Q Consensus       473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  528 (543)
                      ++|++.+.+|..+..+++|++|+|++|.++ .+|..+.  ++|+.|++++|++...
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence            457778789999999999999999999995 7787766  8999999999988753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-42  Score=374.43  Aligned_cols=419  Identities=19%  Similarity=0.213  Sum_probs=339.2

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEec-cCCcccccCChhhh---------------------------------
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANL-SHLNLSGEFPNWLV---------------------------------   66 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~---------------------------------   66 (543)
                      .+++.|+|+++++.|.+|..+.++++|++|+| ++|.+.+..+....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47999999999999999999999999999999 88776654221100                                 


Q ss_pred             -----------------hcCCCCcEEEccC--CcccccCCCCCcCCCCCCEEEcCCCcccc-----------------CC
Q 040468           67 -----------------ENNTNLETLLLAN--NSLFGSFRMPIHSHQKLATLDVSNNFFQG-----------------HI  110 (543)
Q Consensus        67 -----------------~~l~~L~~L~L~~--~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-----------------~~  110 (543)
                                       .....++.+.+..  |++++ +|..+.++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             0111233333333  56666 78889999999999999999986                 28


Q ss_pred             chhhh-cCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccc-cCchHhhh------CCCCCCEEEccCCcCC
Q 040468          111 PVEIG-TYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTG-EIPERMAT------GCFSLEILALSNNSLQ  181 (543)
Q Consensus       111 ~~~~~-~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~------~~~~L~~L~l~~n~~~  181 (543)
                      |..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..+..      .+++|++|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88875 238999999999999888999999999999999999998 776 57765543      3459999999999998


Q ss_pred             CcCcc--cccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC-CcEEEccCCcccccCcc
Q 040468          182 GHIFS--KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF-LVDIIMPNNNLEGLIPI  258 (543)
Q Consensus       182 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~  258 (543)
                       ..+.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..|..+..+++ |+.|++++|.+. .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             5666  7899999999999999998 777 7889999999999999998 77888888998 999999999988 5577


Q ss_pred             cccCCC--CCcEEEccCCcCccCCCCCC------CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCcc
Q 040468          259 EFCQLR--FLRILDLSNNTIFGTLPSCF------SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR  330 (543)
Q Consensus       259 ~l~~l~--~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  330 (543)
                      .+...+  +|+.|++++|.+.+.++.+.      ..++|+.|++++|.++..+...+..+++|+.|++++|+++ .+|..
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence            776654  49999999999987655433      3468999999999998665555667899999999999998 55554


Q ss_pred             CCC--------CCCCCEEEccCcccccccchhhh--CCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCC
Q 040468          331 IDR--------LPQLSYLLLANNYIEGEIPVQLC--QLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCG  400 (543)
Q Consensus       331 l~~--------~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  400 (543)
                      +..        +++|+.|++++|+++ .+|..+.  .+++|+.|++++|++.+ +|..+..                   
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-------------------  774 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN-------------------  774 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-------------------
T ss_pred             HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-------------------
Confidence            333        238999999999998 7788776  89999999999999975 5554432                   


Q ss_pred             CCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEccc------
Q 040468          401 RASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC------  474 (543)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~------  474 (543)
                                                                                     +++|+.|+|++      
T Consensus       775 ---------------------------------------------------------------L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          775 ---------------------------------------------------------------SSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECCCCBCTTC
T ss_pred             ---------------------------------------------------------------CCCCCEEECCCCCCccc
Confidence                                                                           56899999976      


Q ss_pred             CccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccc
Q 040468          475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL  533 (543)
Q Consensus       475 n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  533 (543)
                      |.+.+.+|..+..+++|++|+|++|.+ +.+|..+.  ++|+.|+|++|++...-+..+
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            777778899999999999999999999 47887765  699999999999875544433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.8e-41  Score=366.17  Aligned_cols=489  Identities=20%  Similarity=0.153  Sum_probs=362.9

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc-CCCCCcCCCCCCEEEcC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSHQKLATLDVS  102 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ls  102 (543)
                      +..+.++++++ .+|.   ..+++++|+|++|.+++..+.. +.++++|++|++++|...+. .+.+|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            46778888888 4564   5589999999999998665655 58999999999999965444 48889999999999999


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh--hcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL  180 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  180 (543)
                      +|.+.+..|..+.. +++|++|++++|.+++..+..  +.++++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            99998544555554 999999999999998756654  899999999999999998555555667799999999999999


Q ss_pred             CCcCcccccCC--CCcCEEeCCCCccCccCchhhhcCCC------CCEEEccCCcCCCcccccccC---CCCCcEEEccC
Q 040468          181 QGHIFSKKFSL--TNLMTLQLDGNNFSGEIPESLSKCRR------LGGLYLSDNHLSGEIPRWLGN---LSFLVDIIMPN  249 (543)
Q Consensus       181 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~  249 (543)
                      .+..+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+....+..+..   ...+..+.+..
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            88777777766  89999999999988776666655554      999999999887666655543   35677887763


Q ss_pred             Cc---------ccccCcccccC--CCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEE
Q 040468          250 NN---------LEGLIPIEFCQ--LRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLD  317 (543)
Q Consensus       250 ~~---------~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  317 (543)
                      +.         +.+.....+..  .++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..|..+++|++|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence            32         22222333433  36899999999999877666554 89999999999999988888899999999999


Q ss_pred             ccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCC--CcccCCCCCCCCCCCCCC
Q 040468          318 LSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPP--CLVNTSLSEGHDEPVAPT  395 (543)
Q Consensus       318 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~  395 (543)
                      +++|.+++..+..+..+++|+.|++++|++....+..|..+++|++|++++|.+.+ ++.  .+..+.+..+......  
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~--  397 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLP--  397 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCC--
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCccccc--
Confidence            99999997888999999999999999999987777789999999999999999863 322  1221111111111000  


Q ss_pred             CCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc---ccccCceeEEEc
Q 040468          396 SSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ---GRILTSMFGIDL  472 (543)
Q Consensus       396 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~l  472 (543)
                       .....+.......+.         ......  .+.       ....+.++.+.+....+.....   ...+++|++|++
T Consensus       398 -~~~~~l~~L~ls~N~---------l~~l~~--~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          398 -KINLTANLIHLSENR---------LENLDI--LYF-------LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             -CCCTTCCEEECCSCC---------CCSSTT--HHH-------HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             -ccccccceeecccCc---------cccCch--hhh-------hhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence             001111111111110         000000  000       0022334444444444332111   122689999999


Q ss_pred             ccCcccc-----ccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          473 SCNKLTG-----EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       473 s~n~l~~-----~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      ++|.++.     ..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..+.  ++|+.|
T Consensus       459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence            9999872     3345688999999999999999988898999999999999999999977666655  666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=351.53  Aligned_cols=428  Identities=20%  Similarity=0.175  Sum_probs=256.4

Q ss_pred             EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468           25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN  104 (543)
Q Consensus        25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~  104 (543)
                      +|++++++++ .+|..+.  ++|++|++++|.+++ ++...+.++++|++|++++|++.+..|.+|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            4445555444 2333222  455555555554442 22222344455555555555544444444455555555555555


Q ss_pred             ccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC--CEEEccCCcC-
Q 040468          105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL--EILALSNNSL-  180 (543)
Q Consensus       105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L--~~L~l~~n~~-  180 (543)
                      .++ .+|..   .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+    ..+..+++|  ++|++++|.+ 
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence            444 34433   24455555555554443 234444555555555555544432    112223444  4555544444 


Q ss_pred             -CCcCcc--------------------------cccCCCCcCEEeCCCCc-------cCccCchhhhcCCCCCEEEccCC
Q 040468          181 -QGHIFS--------------------------KKFSLTNLMTLQLDGNN-------FSGEIPESLSKCRRLGGLYLSDN  226 (543)
Q Consensus       181 -~~~~~~--------------------------~l~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~  226 (543)
                       .+..+.                          .+..+++|+.+++++|.       +.+..+ .+..+++|+.++++++
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence             222222                          33446667777776664       332222 4667777888887777


Q ss_pred             cCCCcccccc---cCCCCCcEEEccCCcccccCcccc-----cCCCCCcEEEccCCcCccCCCCCC-C---cccccEEEc
Q 040468          227 HLSGEIPRWL---GNLSFLVDIIMPNNNLEGLIPIEF-----CQLRFLRILDLSNNTIFGTLPSCF-S---PAYIEQVHL  294 (543)
Q Consensus       227 ~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~-~---~~~L~~L~l  294 (543)
                      .+....+..+   ...++|+.|++++|.+.+..|..+     ..+++|+.+++++|.+ ......+ .   ..+++.|++
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence            6543221111   124588899999988887777777     7888888889888877 2221111 1   156888899


Q ss_pred             CCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc--ccchhhhCCCCCCEEeCCCCccc
Q 040468          295 SKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG--EIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|.+....  .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++  .+|..+..+++|++|++++|.+.
T Consensus       310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            888876432  12577889999999998887778888888899999999998885  45567888889999999998887


Q ss_pred             ccCCCC-cccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeee
Q 040468          373 GHIPPC-LVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFT  451 (543)
Q Consensus       373 ~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (543)
                      +.+|.. +..++                                                            .++.+...
T Consensus       388 ~~l~~~~~~~l~------------------------------------------------------------~L~~L~Ls  407 (520)
T 2z7x_B          388 YDEKKGDCSWTK------------------------------------------------------------SLLSLNMS  407 (520)
T ss_dssp             CCGGGCSCCCCT------------------------------------------------------------TCCEEECC
T ss_pred             cccccchhccCc------------------------------------------------------------cCCEEECc
Confidence            545543 22111                                                            01111111


Q ss_pred             ccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccC
Q 040468          452 TKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  529 (543)
Q Consensus       452 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~  529 (543)
                      ...+.........++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus       408 ~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          408 SNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             SSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            111111111111368999999999999 88888889999999999999999444344889999999999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-41  Score=354.74  Aligned_cols=463  Identities=17%  Similarity=0.120  Sum_probs=306.0

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .+|++|++++|.+++..|..+.++++|++|++++|.+++..+.. +.++++|++|++++|++.+..+..++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            37999999999999777788899999999999999998555544 58899999999999999877777789999999999


Q ss_pred             cCCCcccc-CCchhhhcCCCCCcEEEcCCCc-CccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468          101 VSNNFFQG-HIPVEIGTYLPGLMEFNLSRNA-FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN  178 (543)
Q Consensus       101 ls~~~i~~-~~~~~~~~~l~~L~~L~L~~~~-i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n  178 (543)
                      +++|.+++ ..+..+.. +++|++|++++|. +....+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus       105 Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n  182 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLS  182 (549)
T ss_dssp             CTTCCCSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS
T ss_pred             CCCCcccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccC
Confidence            99999874 23444444 8999999999998 4433346788999999999999998855565444 4888889999888


Q ss_pred             cCCCcCcccccCCCCcCEEeCCCCccCccC--c-hhhhcCCCCCEEEccCCcCCCccc----ccccCCCCCcEEEccCCc
Q 040468          179 SLQGHIFSKKFSLTNLMTLQLDGNNFSGEI--P-ESLSKCRRLGGLYLSDNHLSGEIP----RWLGNLSFLVDIIMPNNN  251 (543)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~  251 (543)
                      .+.......+..+++|++|++++|.+.+..  + .....+++|+.++++++.+....+    ..+..+++++.+++++|.
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            876443333456888999999888877531  1 122446778888888877653222    334556778888888776


Q ss_pred             ccccC------cccccCCCCCcEEEccCCcCccCCC--CC---C-CcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468          252 LEGLI------PIEFCQLRFLRILDLSNNTIFGTLP--SC---F-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS  319 (543)
Q Consensus       252 ~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~--~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  319 (543)
                      +.+..      ...+..+++++.+++.++.+.....  ..   + ..++|+.|++++|.+...+...+..+++|++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence            65421      1223455666667666665432110  00   0 03456666666666654333333456666666666


Q ss_pred             ccccccccC---ccCCCCCCCCEEEccCcccccccc--hhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCC
Q 040468          320 YNCLHGSIP---NRIDRLPQLSYLLLANNYIEGEIP--VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAP  394 (543)
Q Consensus       320 ~~~i~~~~~---~~l~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  394 (543)
                      +|++++..|   ..++.+++|+.|++++|++++..+  ..+..+++|++|++++|.+. .+|+.+..++..         
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L---------  412 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM---------  412 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC---------
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc---------
Confidence            666665432   235566666666666666653321  34566666666666666665 344433222110         


Q ss_pred             CCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEccc
Q 040468          395 TSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC  474 (543)
Q Consensus       395 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  474 (543)
                              .....+.+.         .           ..++...  ...++.+......+....  ..+++|++|++++
T Consensus       413 --------~~L~Ls~N~---------l-----------~~l~~~~--~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~  460 (549)
T 2z81_A          413 --------RFLNLSSTG---------I-----------RVVKTCI--PQTLEVLDVSNNNLDSFS--LFLPRLQELYISR  460 (549)
T ss_dssp             --------CEEECTTSC---------C-----------SCCCTTS--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCS
T ss_pred             --------cEEECCCCC---------c-----------ccccchh--cCCceEEECCCCChhhhc--ccCChhcEEECCC
Confidence                    000000000         0           0000000  012222222222222211  1278999999999


Q ss_pred             CccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCC
Q 040468          475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       475 n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                      |+++ .+|. ...+++|++|+|++|++++..|..+..+++|+.|++++|++.+.+|
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9998 6776 4678999999999999998888889999999999999999987665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.5e-41  Score=354.03  Aligned_cols=404  Identities=21%  Similarity=0.303  Sum_probs=250.4

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccc------c------cCCCC---------------------C-
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLF------G------SFRMP---------------------I-   90 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~------~------~~~~~---------------------~-   90 (543)
                      .+++.|+|+++.+.+.+|..+ .++++|++|+|++|.+.      +      .+|..                     + 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            588999999999998899775 89999999999999651      1      00000                     0 


Q ss_pred             ------------------cCCCCCCEEEcC--CCccccCCchhhhcCCCCCcEEEcCCCcCccC----------------
Q 040468           91 ------------------HSHQKLATLDVS--NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGS----------------  134 (543)
Q Consensus        91 ------------------~~~~~L~~L~ls--~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~----------------  134 (543)
                                        .....++.+.+.  .|.+++ +|..+.. +++|++|++++|.+++.                
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcc
Confidence                              000111111121  244553 5555555 56666666666666643                


Q ss_pred             -Cchhhc--CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc-CCC-cCcccccCC------CCcCEEeCCCCc
Q 040468          135 -IPSSFA--DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS-LQG-HIFSKKFSL------TNLMTLQLDGNN  203 (543)
Q Consensus       135 -~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~~~  203 (543)
                       +|..+.  ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..+..++.+      ++|+.|++++|.
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence             555555  666666666666665555554433 36666666666665 554 444444443      566666666666


Q ss_pred             cCccCch--hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCC-CcEEEccCCcCccCC
Q 040468          204 FSGEIPE--SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF-LRILDLSNNTIFGTL  280 (543)
Q Consensus       204 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~  280 (543)
                      ++ .+|.  .+..+++|+.|++++|.+....| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.. +
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l  392 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I  392 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c
Confidence            65 5555  56666666666666666554444 5555666666666666665 34455555565 6666666666553 2


Q ss_pred             CCCCC---cccccEEEcCCCccccccCCCCC-------CCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccc
Q 040468          281 PSCFS---PAYIEQVHLSKNKIEGRLESVIP-------DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE  350 (543)
Q Consensus       281 ~~~~~---~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~  350 (543)
                      +..+.   +++|+.|++++|.+.+..+..+.       .+++|++|++++|.++...+..+..+++|+.|++++|+++ .
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~  471 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E  471 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence            32222   22566666666666555544444       4556666666666666322233444566666666666665 3


Q ss_pred             cchh-hhCC-------CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCC
Q 040468          351 IPVQ-LCQL-------KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS  422 (543)
Q Consensus       351 ~~~~-l~~l-------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  422 (543)
                      +|.. +...       ++|++|++++|.+. .+|..+..                                         
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-----------------------------------------  509 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-----------------------------------------  509 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred             cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence            3332 2222       15666666666654 33332210                                         


Q ss_pred             CCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeC------
Q 040468          423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNL------  496 (543)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l------  496 (543)
                                                             ..+++|++|+|++|++++ +|..+..+++|++|+|      
T Consensus       510 ---------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          510 ---------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             ---------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred             ---------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence                                                   016799999999999995 8999999999999999      


Q ss_pred             cCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          497 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       497 s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      ++|.+.+.+|.+|..+++|+.|++++|++ +.+|..+.  ++|+.|
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L  592 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL  592 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence            56778889999999999999999999999 57787654  677665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-39  Score=349.74  Aligned_cols=402  Identities=22%  Similarity=0.299  Sum_probs=301.2

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEc-cCCcccccCCCCC---------------------------------
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLL-ANNSLFGSFRMPI---------------------------------   90 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~~~~~~---------------------------------   90 (543)
                      .+++.|+|+++.+.+.+|..+ .++++|++|+| ++|.+.+..+...                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            679999999999999999875 89999999999 7776654422110                                 


Q ss_pred             ------------------cCCCCCCEEEcCC--CccccCCchhhhcCCCCCcEEEcCCCcCcc-----------------
Q 040468           91 ------------------HSHQKLATLDVSN--NFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-----------------  133 (543)
Q Consensus        91 ------------------~~~~~L~~L~ls~--~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-----------------  133 (543)
                                        .....++.+.+..  |.+++ +|..+.. +++|++|++++|.+++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                              1112233333333  56664 7877776 8888888888888886                 


Q ss_pred             CCchhhc--CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc-CCC-cCccccc-------CCCCcCEEeCCCC
Q 040468          134 SIPSSFA--DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS-LQG-HIFSKKF-------SLTNLMTLQLDGN  202 (543)
Q Consensus       134 ~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~-------~l~~L~~L~l~~~  202 (543)
                      .+|..++  ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +.+ ..+..++       .+++|+.|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            2777766  888888888888887777775554 48888888888887 665 4454443       3458888888888


Q ss_pred             ccCccCch--hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCC-CcEEEccCCcCccC
Q 040468          203 NFSGEIPE--SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRF-LRILDLSNNTIFGT  279 (543)
Q Consensus       203 ~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~  279 (543)
                      .+. .+|.  .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.. 
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-  633 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-  633 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-
Confidence            888 6776  7888888888888888887 666 7888888888888888888 56767777887 8888888888874 


Q ss_pred             CCCCCC-c--ccccEEEcCCCccccccCCCC---C--CCCCccEEEccccccccccCcc-CCCCCCCCEEEccCcccccc
Q 040468          280 LPSCFS-P--AYIEQVHLSKNKIEGRLESVI---P--DSPNLVTLDLSYNCLHGSIPNR-IDRLPQLSYLLLANNYIEGE  350 (543)
Q Consensus       280 ~~~~~~-~--~~L~~L~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~i~~~~~~~-l~~~~~L~~L~l~~n~i~~~  350 (543)
                      ++..+. .  ++|+.|++++|.+.+..+...   .  ..++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~  711 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S  711 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence            444333 2  348888888888876543221   1  3457888888888888 44544 457888888888888887 5


Q ss_pred             cchhhhC--------CCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCC
Q 040468          351 IPVQLCQ--------LKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS  422 (543)
Q Consensus       351 ~~~~l~~--------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  422 (543)
                      +|..+..        +++|+.|++++|.+. .+|..+...                                        
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~----------------------------------------  750 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT----------------------------------------  750 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT----------------------------------------
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc----------------------------------------
Confidence            5544332        238888888888876 455433200                                        


Q ss_pred             CCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC----
Q 040468          423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH----  498 (543)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~----  498 (543)
                                                              .+++|+.|+|++|++++ +|..+..+++|+.|+|++    
T Consensus       751 ----------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          751 ----------------------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             ----------------------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             ----------------------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence                                                    16799999999999994 899999999999999976    


Q ss_pred             --CccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          499 --NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       499 --n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                        |.+.+.+|.+|..+++|+.|+|++|++ +.+|..+.  ++|+.|
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~L  832 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYIL  832 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEE
Confidence              778889999999999999999999999 58887654  577665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-39  Score=340.83  Aligned_cols=468  Identities=18%  Similarity=0.124  Sum_probs=350.9

Q ss_pred             EEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCc
Q 040468           26 ISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF  105 (543)
Q Consensus        26 L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~  105 (543)
                      .+.++++++ .+|..+.  ++|++|++++|.+++..+.. +.++++|++|++++|++.+..+.+|..+++|++|++++|.
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            577777777 5565443  89999999999998655555 5899999999999999998888999999999999999999


Q ss_pred             cccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468          106 FQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI  184 (543)
Q Consensus       106 i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  184 (543)
                      +. .++...+..+++|++|++++|.+++ ..+..+.++++|++|++++|...+.++...+..+++|++|++++|.+.+..
T Consensus        86 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A           86 LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             CC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             cC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence            99 5555544459999999999999985 356789999999999999998555777666777999999999999999888


Q ss_pred             cccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcc--c-ccccCCCCCcEEEccCCcccccCc----
Q 040468          185 FSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI--P-RWLGNLSFLVDIIMPNNNLEGLIP----  257 (543)
Q Consensus       185 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~----  257 (543)
                      +..+..+++|+.|++..+.+.......+..+++|++|++++|.+....  + .....+++|+.+++++|.+.+..+    
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            889999999999999999876332333456899999999999987532  1 223467899999999998875433    


Q ss_pred             ccccCCCCCcEEEccCCcCccCCC-------CCCCcccccEEEcCCCccccccC-----CCCCCCCCccEEEcccccccc
Q 040468          258 IEFCQLRFLRILDLSNNTIFGTLP-------SCFSPAYIEQVHLSKNKIEGRLE-----SVIPDSPNLVTLDLSYNCLHG  325 (543)
Q Consensus       258 ~~l~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~i~~  325 (543)
                      ..+..+++|+.+++++|.+.+...       .....++++.+++.++.+.....     ..+...++|++|++++|.+. 
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-  323 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-  323 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred             HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence            334567899999999998765321       12236789999999887754321     11123478999999999998 


Q ss_pred             ccCccC-CCCCCCCEEEccCcccccccch---hhhCCCCCCEEeCCCCcccccCC--CCcccCCCCCCCCCCCCCCCCCC
Q 040468          326 SIPNRI-DRLPQLSYLLLANNYIEGEIPV---QLCQLKEVQLIDLSHNNLSGHIP--PCLVNTSLSEGHDEPVAPTSSSC  399 (543)
Q Consensus       326 ~~~~~l-~~~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c  399 (543)
                      .+|..+ ..+++|+.|++++|++++..+.   .+..+++|++|++++|.+.+..+  ..+..++                
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~----------------  387 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK----------------  387 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT----------------
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC----------------
Confidence            666665 5799999999999999876543   36789999999999999864211  1222222                


Q ss_pred             CCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccc
Q 040468          400 GRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG  479 (543)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  479 (543)
                       .+.....+.+.-                    ..++........++.+......+... ....+++|++|++++|++++
T Consensus       388 -~L~~L~Ls~N~l--------------------~~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~Ls~N~l~~  445 (549)
T 2z81_A          388 -NLTSLDISRNTF--------------------HPMPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQTLEVLDVSNNNLDS  445 (549)
T ss_dssp             -TCCEEECTTCCC--------------------CCCCSCCCCCTTCCEEECTTSCCSCC-CTTSCTTCSEEECCSSCCSC
T ss_pred             -CCCEEECCCCCC--------------------ccCChhhcccccccEEECCCCCcccc-cchhcCCceEEECCCCChhh
Confidence             111122222110                    00111111223334444444333221 22235799999999999994


Q ss_pred             ccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcCC
Q 040468          480 EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVFR  543 (543)
Q Consensus       480 ~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~  543 (543)
                       .+   ..+++|++|+|++|+++ .+|. ...+++|+.|++++|++++..|+.+..+++|++|+
T Consensus       446 -~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  503 (549)
T 2z81_A          446 -FS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW  503 (549)
T ss_dssp             -CC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             -hc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence             33   57899999999999999 6675 47899999999999999988888899999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.7e-39  Score=327.11  Aligned_cols=390  Identities=16%  Similarity=0.117  Sum_probs=214.7

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccc-cCCCCCcCCCCCCEEEcC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFG-SFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~ls  102 (543)
                      +.++.++++++ .+|.   -.++|++|++++|.+++..+.. +.++++|++|++++|.+.+ ..+.+|..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34555555555 3443   2267777777777776444444 4677777777777776643 335567777777777777


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchh--hcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSS--FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL  180 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  180 (543)
                      +|.+.+..|..+.. +++|++|++++|.+++..+..  +.++++|++|++++|.+.+..|..++..+++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            77776333444444 677777777777776433333  666777777777777776444555455567777777777766


Q ss_pred             CCcCcccccCC--CCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcc
Q 040468          181 QGHIFSKKFSL--TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI  258 (543)
Q Consensus       181 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  258 (543)
                      .+..+..+..+  ++++.+++.++.+....+..+..                .....+..+++|+.|++++|.+.+..+.
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchh
Confidence            65555444433  45666666665554322211100                0001122334555555555555544333


Q ss_pred             cccC---CCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCC--CCCCccEEEccccccccccCccCCC
Q 040468          259 EFCQ---LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP--DSPNLVTLDLSYNCLHGSIPNRIDR  333 (543)
Q Consensus       259 ~l~~---l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~  333 (543)
                      .+..   .++|+.+++++|...+......             .+.+.....+.  ..++|++|++++|.+++..+..+..
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  297 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH  297 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred             hhhccccccceeeEeeccccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhccc
Confidence            3322   2455666665554332211110             00000001111  1245666666666666555555666


Q ss_pred             CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 040468          334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTA  413 (543)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  413 (543)
                      +++|+.|++++|++++..+..|..+++|++|++++|.+.+..|..+..                                
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------  345 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN--------------------------------  345 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------
Confidence            666666666666666555555666666666666666554332222221                                


Q ss_pred             cCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCe
Q 040468          414 LNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHA  493 (543)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~  493 (543)
                                                                        +++|++|++++|++++..|..+..+++|++
T Consensus       346 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          346 --------------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------------------------------cccCCEEECCCCcccccChhhccccccccE
Confidence                                                              345666666666666545556666666666


Q ss_pred             eeCcCCccccccChhhhccCCCCeeeCCCCcCcccCC
Q 040468          494 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       494 L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                      |+|++|++++..+..+..+++|+.|++++|++++.+|
T Consensus       376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            6666666665555555666666666666666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-39  Score=334.67  Aligned_cols=416  Identities=20%  Similarity=0.187  Sum_probs=310.0

Q ss_pred             CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC
Q 040468           48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS  127 (543)
Q Consensus        48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~  127 (543)
                      ++++++++.++ .+|..+.   ++|++|++++|++.+..+.++..+++|++|++++|.+++..|..+.. +++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecC
Confidence            68999999998 7887653   89999999999998877788999999999999999998444555554 9999999999


Q ss_pred             CCcCccCCchhhcCCCCCCEEecccccccc-cCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCc--CEEeCCCCcc
Q 040468          128 RNAFNGSIPSSFADMQMLARLDISYNQLTG-EIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNL--MTLQLDGNNF  204 (543)
Q Consensus       128 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~~~~  204 (543)
                      +|.++ .+|..  .+++|++|++++|.+.+ .+|.. +..+++|++|++++|.+..   ..+..+++|  +.|++.+|.+
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            99998 45655  78999999999999984 24544 4559999999999999875   345667777  9999999988


Q ss_pred             --CccCchhhhc--------------------------CCCCCEEEccCCc-------CCCcccccccCCCCCcEEEccC
Q 040468          205 --SGEIPESLSK--------------------------CRRLGGLYLSDNH-------LSGEIPRWLGNLSFLVDIIMPN  249 (543)
Q Consensus       205 --~~~~~~~l~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~  249 (543)
                        .+..|..+..                          +++|+.+++++|.       +....+ .+..+++|+.+++.+
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              5555555544                          4556666666654       222222 466777788888877


Q ss_pred             CcccccCccccc---CCCCCcEEEccCCcCccCCCCC------CCcccccEEEcCCCccccccCCCCCCC---CCccEEE
Q 040468          250 NNLEGLIPIEFC---QLRFLRILDLSNNTIFGTLPSC------FSPAYIEQVHLSKNKIEGRLESVIPDS---PNLVTLD  317 (543)
Q Consensus       250 ~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~  317 (543)
                      +.+.+..+..+.   ..++|+.|++++|.+.+..+..      ..++.|+.+++.+|.+ ..+...+..+   ++|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            766543221111   2458999999999988655554      3478899999999887 2221222222   6799999


Q ss_pred             ccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc--cCCCCcccCCCCCCCCCCCCCC
Q 040468          318 LSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG--HIPPCLVNTSLSEGHDEPVAPT  395 (543)
Q Consensus       318 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~  395 (543)
                      +++|.+....  ....+++|+.|++++|++++..|..+..+++|++|++++|.+.+  .+|..+..++..          
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L----------  376 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL----------  376 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----------
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC----------
Confidence            9999987432  23688999999999999998788899999999999999999974  333333332211          


Q ss_pred             CCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc-cc--cccccCceeEEEc
Q 040468          396 SSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY-YY--QGRILTSMFGIDL  472 (543)
Q Consensus       396 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~L~~L~l  472 (543)
                             .                                           .+......+.. .-  ....+++|++|++
T Consensus       377 -------~-------------------------------------------~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          377 -------Q-------------------------------------------QLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             -------C-------------------------------------------EEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             -------C-------------------------------------------EEECCCCcCCcccccchhccCccCCEEEC
Confidence                   1                                           11111111111 00  0122689999999


Q ss_pred             ccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc-ccccCcCCcCC
Q 040468          473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-LTVLTTLAVFR  543 (543)
Q Consensus       473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~l~  543 (543)
                      ++|++++..|..+.  ++|++|++++|.++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|++|+
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence            99999877777665  79999999999999 88888889999999999999999 55654 88888888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-38  Score=331.46  Aligned_cols=431  Identities=18%  Similarity=0.168  Sum_probs=287.1

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      ..++++++++++++ +|..+.  ++|++|++++|.+++ ++...+.++++|++|++++|++.+..+.+|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            45899999999995 665543  899999999999984 45444689999999999999998888999999999999999


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCCC--CEEEccCC
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL--EILALSNN  178 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L--~~L~l~~n  178 (543)
                      ++|.++ .+|..   .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.. ..   +..+++|  ++|++++|
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEES
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecc
Confidence            999998 77776   48999999999999986 345789999999999999998873 22   2335555  99999999


Q ss_pred             cC--CCcCcccccCC--------------------------CCcCEEeCCCCccC----ccCchhhhcCCCCCEEEccCC
Q 040468          179 SL--QGHIFSKKFSL--------------------------TNLMTLQLDGNNFS----GEIPESLSKCRRLGGLYLSDN  226 (543)
Q Consensus       179 ~~--~~~~~~~l~~l--------------------------~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~  226 (543)
                      .+  .+..+..+..+                          ++|+.+++.+|...    ......+..++.++.+++.++
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            88  55555544443                          34444444444210    001122344455555555444


Q ss_pred             cCCCc----ccccccCCCCCcEEEccCCcccccCcccc-----cCCCCCcEEEccCCcCccCCCCC----CCcccccEEE
Q 040468          227 HLSGE----IPRWLGNLSFLVDIIMPNNNLEGLIPIEF-----CQLRFLRILDLSNNTIFGTLPSC----FSPAYIEQVH  293 (543)
Q Consensus       227 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~  293 (543)
                      .+...    .+.. ...++|++|++++|.+.+..|..+     ..++.|+.+++..+.+ ......    +...+++.|+
T Consensus       260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred             cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence            33311    1111 123478888888888876666655     4444455555544443 111000    0124577777


Q ss_pred             cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc--ccchhhhCCCCCCEEeCCCCcc
Q 040468          294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG--EIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      +++|.+....  ....+++|++|++++|.+++..|..+..+++|+.|++++|++++  .+|..+.++++|++|++++|.+
T Consensus       338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence            7777664322  12456777777777777776667777777777777777777764  2345566777777777777777


Q ss_pred             cccCCCC-cccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceee
Q 040468          372 SGHIPPC-LVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQF  450 (543)
Q Consensus       372 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (543)
                      .+.+|+. +..++                                                            .++.+..
T Consensus       416 ~~~~~~~~~~~l~------------------------------------------------------------~L~~L~l  435 (562)
T 3a79_B          416 NSHAYDRTCAWAE------------------------------------------------------------SILVLNL  435 (562)
T ss_dssp             BSCCSSCCCCCCT------------------------------------------------------------TCCEEEC
T ss_pred             CCccChhhhcCcc------------------------------------------------------------cCCEEEC
Confidence            6544433 11111                                                            0001111


Q ss_pred             eccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChh-hhccCCCCeeeCCCCcCcccC
Q 040468          451 TTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTT-FSNLKQIESLDLSYNLLHGKI  529 (543)
Q Consensus       451 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~  529 (543)
                      ....+.........++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..
T Consensus       436 ~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          436 SSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            1111110001111258999999999999 78888889999999999999999 45555 899999999999999998654


Q ss_pred             C
Q 040468          530 P  530 (543)
Q Consensus       530 ~  530 (543)
                      +
T Consensus       514 ~  514 (562)
T 3a79_B          514 P  514 (562)
T ss_dssp             H
T ss_pred             c
Confidence            3

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.7e-37  Score=326.34  Aligned_cols=420  Identities=18%  Similarity=0.141  Sum_probs=254.6

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      ++++|+|++|++++..+..+.++++|++|+|++|+++ .+++..|.++++|++|+|++|++.+..+.+|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            7999999999998666677899999999999999997 555555688999999999999998777788999999999999


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCcc-CCchhhcCCCCCCEEecccccccccCchHhhhCCCC----CCEEEcc
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS----LEILALS  176 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~----L~~L~l~  176 (543)
                      ++|.++ .++...+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+.. +..+.+    ...++++
T Consensus       132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECT
T ss_pred             CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcc
Confidence            999998 6666655558999999999999875 35778888999999999999887433332 222222    2345555


Q ss_pred             CCcCCCcCcccc------------------------cCCCCcCE------------------------------------
Q 040468          177 NNSLQGHIFSKK------------------------FSLTNLMT------------------------------------  196 (543)
Q Consensus       177 ~n~~~~~~~~~l------------------------~~l~~L~~------------------------------------  196 (543)
                      .|.+....+..+                        ..++.++.                                    
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            554432211111                        11111111                                    


Q ss_pred             ---------------------EeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccc-------------------cc
Q 040468          197 ---------------------LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR-------------------WL  236 (543)
Q Consensus       197 ---------------------L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------------------~l  236 (543)
                                           +.+.++.+...  ..+.....++.+++.++.+......                   ..
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                                 11111111100  0112223344444444333211110                   11


Q ss_pred             cCCCCCcEEEccCCcccc--cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc-cCCCCCCCCCc
Q 040468          237 GNLSFLVDIIMPNNNLEG--LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-LESVIPDSPNL  313 (543)
Q Consensus       237 ~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  313 (543)
                      ..+++|+.+++++|.+..  ..+..+..+.+|+.+++..+........+..+++|+.+++..+..... ....+..++++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            123344444444443321  112222333444444444444433333333455566666655544333 22344555666


Q ss_pred             cEEEccccccccccCccCCCCCCCCEEEccCcccc-cccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCC
Q 040468          314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE-GEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV  392 (543)
Q Consensus       314 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  392 (543)
                      +.++++.|.+....+..+..++.++.|++++|++. ...|..|..+++|++|++++|.+.+..|..+..           
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~-----------  516 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----------  516 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----------
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC-----------
Confidence            66666666666555555666666666666666533 234555666666666666666665444433332           


Q ss_pred             CCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc
Q 040468          393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL  472 (543)
Q Consensus       393 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  472 (543)
                                                                                             +++|++|+|
T Consensus       517 -----------------------------------------------------------------------l~~L~~L~L  525 (635)
T 4g8a_A          517 -----------------------------------------------------------------------LSSLQVLNM  525 (635)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------CCCCCEEEC
Confidence                                                                                   457777777


Q ss_pred             ccCccccccChhhhcccccCeeeCcCCccccccChhhhcc-CCCCeeeCCCCcCccc
Q 040468          473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLHGK  528 (543)
Q Consensus       473 s~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~i~~~  528 (543)
                      ++|++++..|..|..+++|++|+|++|++++..|..+..+ ++|+.|++++|++.+.
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            7777775556667777777777777777777777777776 4677777777777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.4e-37  Score=313.47  Aligned_cols=372  Identities=19%  Similarity=0.173  Sum_probs=278.7

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEE
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  100 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~  100 (543)
                      .+|++|+|+++.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++|++.+..|.++.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            37999999999999877888999999999999999987777766678999999999999999888899999999999999


Q ss_pred             cCCCccccCCchh-hhcCCCCCcEEEcCCCcCccCCchh-hcCCCCCCEEecccccccccCchHhhh-CCCCCCEEEccC
Q 040468          101 VSNNFFQGHIPVE-IGTYLPGLMEFNLSRNAFNGSIPSS-FADMQMLARLDISYNQLTGEIPERMAT-GCFSLEILALSN  177 (543)
Q Consensus       101 ls~~~i~~~~~~~-~~~~l~~L~~L~L~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~l~~  177 (543)
                      +++|.+.+..+.. .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+.. ...+++.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999988544443 2444899999999999999776765 889999999999999998555544332 126799999999


Q ss_pred             CcCCCcCccc--------ccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468          178 NSLQGHIFSK--------KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN  249 (543)
Q Consensus       178 n~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  249 (543)
                      |.+.......        +..+++|+.|++++|.+.+..+..+...                     ...++++.+++++
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~  248 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSN  248 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc---------------------ccccceeeEeecc
Confidence            9887544332        2234556666666666554444333322                     0113444444444


Q ss_pred             CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468          250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN  329 (543)
Q Consensus       250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  329 (543)
                      |...+... ....++.+..     .     .......++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus       249 ~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  317 (455)
T 3v47_A          249 SYNMGSSF-GHTNFKDPDN-----F-----TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN  317 (455)
T ss_dssp             CTTTSCCT-TCCSSCCCCT-----T-----TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             cccccccc-chhhhccCcc-----c-----ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence            43322100 0000010000     0     00001146788888888888877777888889999999999999877788


Q ss_pred             cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468          330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY  409 (543)
Q Consensus       330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  409 (543)
                      .+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..|..+..                            
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------  369 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG----------------------------  369 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT----------------------------
T ss_pred             HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc----------------------------
Confidence            8899999999999999998777888889999999999999887655544433                            


Q ss_pred             cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468          410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT  489 (543)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~  489 (543)
                                                                            +++|++|++++|++++..+..+..++
T Consensus       370 ------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          370 ------------------------------------------------------LPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ------------------------------------------------------cccccEEECCCCccccCCHhHhccCC
Confidence                                                                  56899999999999954455678999


Q ss_pred             ccCeeeCcCCccccccC
Q 040468          490 KIHALNLSHNNLTGTIP  506 (543)
Q Consensus       490 ~L~~L~ls~n~i~~~~~  506 (543)
                      +|++|+|++|++++..|
T Consensus       396 ~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             cccEEEccCCCcccCCC
Confidence            99999999999998776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.9e-36  Score=317.69  Aligned_cols=452  Identities=19%  Similarity=0.128  Sum_probs=302.3

Q ss_pred             EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCC
Q 040468           25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNN  104 (543)
Q Consensus        25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~  104 (543)
                      ..+-++-+++ .+|..+-  +++++|+|++|.++ .++...|.++++|++|+|++|++.+..+.+|.++++|++|+|++|
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            3344444555 4554331  48999999999998 566555699999999999999998888889999999999999999


Q ss_pred             ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcC
Q 040468          105 FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI  184 (543)
Q Consensus       105 ~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  184 (543)
                      .++ .+|...+..+++|++|++++|.+++..+..|+++++|++|++++|.+........+..+++|++|++++|.+.+..
T Consensus       111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          111 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             cCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            998 7887777779999999999999997666679999999999999999874333344556999999999999998776


Q ss_pred             cccccCCCC----cCEEeCCCCccCccCchh------------------------hhcCCCCCEEEccCCcC------CC
Q 040468          185 FSKKFSLTN----LMTLQLDGNNFSGEIPES------------------------LSKCRRLGGLYLSDNHL------SG  230 (543)
Q Consensus       185 ~~~l~~l~~----L~~L~l~~~~~~~~~~~~------------------------l~~~~~L~~L~l~~~~~------~~  230 (543)
                      +..+..+.+    ...++++.+.+....+..                        +..+..++...+..+..      ..
T Consensus       190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            666554333    335666666554322211                        11222222221110000      00


Q ss_pred             ---------------------------cccc----------------------cccCCCCCcEEEccCCcccccCccccc
Q 040468          231 ---------------------------EIPR----------------------WLGNLSFLVDIIMPNNNLEGLIPIEFC  261 (543)
Q Consensus       231 ---------------------------~~~~----------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~  261 (543)
                                                 ....                      .+.....++.+++.+|.+....+   .
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~  346 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---L  346 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---C
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---c
Confidence                                       0001                      11222334444444443332211   1


Q ss_pred             CCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccc--cCCCCCCCCCccEEEccccccccccCccCCCCCCCCE
Q 040468          262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR--LESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSY  339 (543)
Q Consensus       262 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~  339 (543)
                      .+..|+.+++..+.... ......+++|+.+++++|.+...  .+..+....+|+++++..+.+. ..+..+..+++|+.
T Consensus       347 ~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~  424 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEH  424 (635)
T ss_dssp             BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCE
T ss_pred             cchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccc
Confidence            23344455554444332 22223467888888888877533  2223445677888888888776 45556777888888


Q ss_pred             EEccCccccccc-chhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCcc
Q 040468          340 LLLANNYIEGEI-PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT  418 (543)
Q Consensus       340 L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  418 (543)
                      +++.+++..... ...+..+++++.++++.|.+....+..+...+...                 ......+....    
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~-----------------~L~Ls~N~~~~----  483 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-----------------VLKMAGNSFQE----  483 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-----------------EEECTTCEEGG----
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhh-----------------hhhhhhccccc----
Confidence            888877665433 34566778888888888887655444433322111                 00000000000    


Q ss_pred             CCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcC
Q 040468          419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSH  498 (543)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~  498 (543)
                                    ...                      -.....+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus       484 --------------~~~----------------------~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          484 --------------NFL----------------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             --------------GEE----------------------CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             --------------ccC----------------------chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence                          000                      00011268999999999999977788999999999999999


Q ss_pred             CccccccChhhhccCCCCeeeCCCCcCcccCCcccccc-CcCCcCC
Q 040468          499 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL-TTLAVFR  543 (543)
Q Consensus       499 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~l~  543 (543)
                      |+|++..|..|..+++|+.|++++|+|++..|+.+..+ ++|+.|+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence            99998889999999999999999999999999999887 6788763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-36  Score=318.37  Aligned_cols=424  Identities=20%  Similarity=0.189  Sum_probs=285.5

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL  121 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L  121 (543)
                      ..+...++++++++.++ .+|..+   .++|++|++++|.+.+..+.++..+++|++|++++|.+++..|..+. .+++|
T Consensus        28 ~~~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L  102 (562)
T 3a79_B           28 FSNELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDL  102 (562)
T ss_dssp             -----CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTC
T ss_pred             cccCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCC
Confidence            34556699999999998 688765   38999999999999888888999999999999999999843344444 49999


Q ss_pred             cEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCc-hHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468          122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIP-ERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD  200 (543)
Q Consensus       122 ~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  200 (543)
                      ++|++++|.++ .+|..  .+++|++|++++|.+. .++ ...+..+++|++|++++|.+.......+..+ +|+.|+++
T Consensus       103 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~  177 (562)
T 3a79_B          103 EYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD  177 (562)
T ss_dssp             CEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred             CEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence            99999999998 45555  7999999999999998 443 2445569999999999999876433333333 44999999


Q ss_pred             CCcc--CccCchhhhcCC-CCCEEEccCCcCCCccc-----------------------------ccccCCCCCcEEEcc
Q 040468          201 GNNF--SGEIPESLSKCR-RLGGLYLSDNHLSGEIP-----------------------------RWLGNLSFLVDIIMP  248 (543)
Q Consensus       201 ~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~-----------------------------~~l~~~~~L~~L~l~  248 (543)
                      +|.+  .+..+..+..+. ..-.+++++|.+....+                             ..+..++.++.+++.
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  656665555433 11133444444332222                             123334444444444


Q ss_pred             CCccccc----CcccccCCCCCcEEEccCCcCccCCCCCC------CcccccEEEcCCCccccccCCCCC---CCCCccE
Q 040468          249 NNNLEGL----IPIEFCQLRFLRILDLSNNTIFGTLPSCF------SPAYIEQVHLSKNKIEGRLESVIP---DSPNLVT  315 (543)
Q Consensus       249 ~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~  315 (543)
                      ++.+.+.    .+..+ ..++|+.|++++|.+.+..+...      .++.|+.+++..+.+ ..+...+.   ..++|++
T Consensus       258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred             CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence            4333221    01111 22467777777777664444322      123333333333332 01000000   1257999


Q ss_pred             EEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccccc--CCCCcccCCCCCCCCCCCC
Q 040468          316 LDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH--IPPCLVNTSLSEGHDEPVA  393 (543)
Q Consensus       316 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~~~~~~  393 (543)
                      |++++|.+....  ....+++|+.|++++|++++..|..+.++++|++|++++|.+.+.  +|..+..++.         
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~---------  404 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS---------  404 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT---------
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC---------
Confidence            999999886322  236889999999999999988889999999999999999998741  1223333221         


Q ss_pred             CCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcc---cccccccCceeEE
Q 040468          394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSY---YYQGRILTSMFGI  470 (543)
Q Consensus       394 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L  470 (543)
                              +.......                                           ..+..   ......+++|++|
T Consensus       405 --------L~~L~l~~-------------------------------------------N~l~~~~~~~~~~~l~~L~~L  433 (562)
T 3a79_B          405 --------LETLDVSL-------------------------------------------NSLNSHAYDRTCAWAESILVL  433 (562)
T ss_dssp             --------CCEEECTT-------------------------------------------SCCBSCCSSCCCCCCTTCCEE
T ss_pred             --------CCEEECCC-------------------------------------------CcCCCccChhhhcCcccCCEE
Confidence                    11111111                                           11110   0001226899999


Q ss_pred             EcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCcc-ccccCcCCcCC
Q 040468          471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQ-LTVLTTLAVFR  543 (543)
Q Consensus       471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~l~  543 (543)
                      ++++|++++..|..+.  ++|++|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|+
T Consensus       434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence            9999999876666554  79999999999999 78888889999999999999999 56665 88899888763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.1e-36  Score=302.69  Aligned_cols=378  Identities=23%  Similarity=0.275  Sum_probs=243.0

Q ss_pred             CceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCC-------------CcEEEccCCcccccCC
Q 040468           21 FQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTN-------------LETLLLANNSLFGSFR   87 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~   87 (543)
                      ..|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ .++.+             +++|+++++++++. |
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P   87 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence            4799999999999 6899999999999999999999988888764 55554             58999999987553 3


Q ss_pred             CCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCC
Q 040468           88 MPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGC  167 (543)
Q Consensus        88 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  167 (543)
                      .   ..++|++|++++|.++ .+|..    +++|++|++++|.+++ ++..   .++|++|++++|.+. .+| . +..+
T Consensus        88 ~---~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp-~-~~~l  152 (454)
T 1jl5_A           88 E---LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLP-E-LQNS  152 (454)
T ss_dssp             S---CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCC-C-CTTC
T ss_pred             C---CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCc-c-cCCC
Confidence            2   2378999999999888 46642    4789999999998874 2221   168999999999888 577 3 5568


Q ss_pred             CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEc
Q 040468          168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM  247 (543)
Q Consensus       168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  247 (543)
                      ++|++|++++|.+.+. +..   .++|++|++++|.+.+ .| .+..+++|+.|++++|.+.. .|..   .++|+.|++
T Consensus       153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            8999999999988752 222   3589999999998875 45 57888999999999988874 3332   358899999


Q ss_pred             cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccccc
Q 040468          248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI  327 (543)
Q Consensus       248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  327 (543)
                      ++|.+.. +| .+..+++|+.|++++|.+.+.. ..  +++|+.|++++|.+++...    ..++|++|++++|.+++ +
T Consensus       223 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l  292 (454)
T 1jl5_A          223 GNNILEE-LP-ELQNLPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L  292 (454)
T ss_dssp             CSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred             cCCcCCc-cc-ccCCCCCCCEEECCCCcCCccc-cc--ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence            9998874 45 4788889999999998887533 22  4788999999998876332    23789999999998884 2


Q ss_pred             CccCCCCCCCCEEEccCcccccccchhhhCC-CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 040468          328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQL-KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYA  406 (543)
Q Consensus       328 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  406 (543)
                      +..   .++|+.|++++|++++ ++    .+ ++|++|++++|.+.+ +|+.                            
T Consensus       293 ~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~----------------------------  335 (454)
T 1jl5_A          293 SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL----------------------------  335 (454)
T ss_dssp             SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred             cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence            221   2678899999998874 22    23 588899999988763 3322                            


Q ss_pred             ccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhh
Q 040468          407 SSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIG  486 (543)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  486 (543)
                                                                               +++|++|++++|+++ .+|.   
T Consensus       336 ---------------------------------------------------------~~~L~~L~L~~N~l~-~lp~---  354 (454)
T 1jl5_A          336 ---------------------------------------------------------PPRLERLIASFNHLA-EVPE---  354 (454)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCS-CCCC---
T ss_pred             ---------------------------------------------------------CCcCCEEECCCCccc-cccc---
Confidence                                                                     246667777777766 4555   


Q ss_pred             cccccCeeeCcCCcccc--ccChhhhcc-------------CCCCeeeCCCCcCcc--cCCcccc
Q 040468          487 YLTKIHALNLSHNNLTG--TIPTTFSNL-------------KQIESLDLSYNLLHG--KIPSQLT  534 (543)
Q Consensus       487 ~l~~L~~L~ls~n~i~~--~~~~~~~~l-------------~~L~~L~l~~n~i~~--~~~~~~~  534 (543)
                      .+++|++|++++|.+++  .+|.++..+             ++|+.|++++|++++  .+|.++.
T Consensus       355 ~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~  419 (454)
T 1jl5_A          355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE  419 (454)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred             hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence            35667777777777766  566666666             667777777777765  5555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-34  Score=296.73  Aligned_cols=301  Identities=26%  Similarity=0.345  Sum_probs=222.8

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~  122 (543)
                      .++++++|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++. +. .+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence            4678899999988886 5665  5778999999999998866554  888899999999999887 4444 44 488999


Q ss_pred             EEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCC
Q 040468          123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN  202 (543)
Q Consensus       123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  202 (543)
                      +|++++|.+++. + .+.++++|++|++++|.+. .++.  +..+++|++|++++ .+...  ..+..+++|+.|++++|
T Consensus       116 ~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDI-D-PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCC-G-GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCC-h-HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCC
Confidence            999999988754 3 3888899999999999887 4443  45688899998864 33322  33778888888888888


Q ss_pred             ccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC
Q 040468          203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS  282 (543)
Q Consensus       203 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  282 (543)
                      .+...  ..+..+++|++|++++|.+....+  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence            87643  346778888888888888775444  66788888888888887754  356677888888888887765433 


Q ss_pred             CCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCC
Q 040468          283 CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ  362 (543)
Q Consensus       283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  362 (543)
                      +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            4446777777777777765543  6667777777777777774333  6677777777777777775444  56777777


Q ss_pred             EEeCCCCccc
Q 040468          363 LIDLSHNNLS  372 (543)
Q Consensus       363 ~L~l~~n~~~  372 (543)
                      +|++++|++.
T Consensus       335 ~L~l~~n~l~  344 (466)
T 1o6v_A          335 RLFFYNNKVS  344 (466)
T ss_dssp             EEECCSSCCC
T ss_pred             EeECCCCccC
Confidence            7777777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.2e-34  Score=292.34  Aligned_cols=320  Identities=26%  Similarity=0.335  Sum_probs=169.1

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      ++++|+++++.+.. ++ .+..+++|++|++++|.++ .++.  +.++++|++|++++|.+.+..+  +..+++|++|++
T Consensus        47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            45666666555553 23 2455566666666666554 2232  3555666666666665544333  555666666666


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCC
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ  181 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  181 (543)
                      ++|.+. .++. + ..+++|++|++++|.+.+ + ..+.++++|++|++++ .+. ..+.  +..+++|++|++++|.+.
T Consensus       120 ~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~~-~~~~--~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          120 FNNQIT-DIDP-L-KNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QVT-DLKP--LANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CSSCCC-CCGG-G-TTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCC-CChH-H-cCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-ccc-Cchh--hccCCCCCEEECcCCcCC
Confidence            666555 3332 2 225566666666665552 2 2355556666666542 222 1221  334556666666666554


Q ss_pred             CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCccccc
Q 040468          182 GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFC  261 (543)
Q Consensus       182 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  261 (543)
                      ..  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence            32  234555566666666665553322  44555666666666655432  235555666666666665554422  45


Q ss_pred             CCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEE
Q 040468          262 QLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLL  341 (543)
Q Consensus       262 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~  341 (543)
                      .+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence            55566666666665554322 3335556666666665554332  4455566666666666554333  45556666666


Q ss_pred             ccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          342 LANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       342 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +++|++++.  ..+..+++|++|++++|++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence            666655532  23555566666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=290.48  Aligned_cols=295  Identities=20%  Similarity=0.241  Sum_probs=205.3

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc
Q 040468           73 ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY  152 (543)
Q Consensus        73 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~  152 (543)
                      +.++.++.+++ .+|..+  .+++++|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            56777777663 344443  357888888888887 44433344488888888888888877778888888888888888


Q ss_pred             ccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcc
Q 040468          153 NQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEI  232 (543)
Q Consensus       153 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  232 (543)
                      |.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....
T Consensus        90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            8887 677666667888888888888887776777778888888888888877666677777888888888888777666


Q ss_pred             cccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCC-CCCCcccccEEEcCCCccccccCCCCCCCC
Q 040468          233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-SCFSPAYIEQVHLSKNKIEGRLESVIPDSP  311 (543)
Q Consensus       233 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  311 (543)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+ ..+...+|+.|++++|.+++.....+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            6667778888888888887777666677777777777777765443322 233344566666666666544434455566


Q ss_pred             CccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            6666666666666554555566666666666666666555555666666666666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.9e-34  Score=286.97  Aligned_cols=359  Identities=23%  Similarity=0.292  Sum_probs=252.6

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCC-------------CEEEcCCCccccC
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKL-------------ATLDVSNNFFQGH  109 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L-------------~~L~ls~~~i~~~  109 (543)
                      +..+|++|+++++.+ +.+|..+ .++++|++|++++|.+.+..|.+++.+.+|             ++|++++|.++ .
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~   85 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred             ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence            468999999999999 6899885 899999999999999988999999988765             88999988887 5


Q ss_pred             CchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCccccc
Q 040468          110 IPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF  189 (543)
Q Consensus       110 ~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~  189 (543)
                      +|.    ..++|++|++++|.+++ +|..   +++|++|++++|.+. .++.    ..++|++|++++|.+.+ .+ .+.
T Consensus        86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~  150 (454)
T 1jl5_A           86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQ  150 (454)
T ss_dssp             CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCT
T ss_pred             CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccC
Confidence            554    24688999999888885 5543   378888999888877 4442    13688888888888876 33 578


Q ss_pred             CCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEE
Q 040468          190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRIL  269 (543)
Q Consensus       190 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  269 (543)
                      .+++|++|++++|.+.+ +|..   ..+|++|++++|.+.. .| .++.+++|+.|++++|.+.+. |..   .++|+.|
T Consensus       151 ~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L  220 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESI  220 (454)
T ss_dssp             TCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEE
T ss_pred             CCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEE
Confidence            88888888888888774 4432   3588888888888874 44 478888888888888887753 322   2578888


Q ss_pred             EccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCccccc
Q 040468          270 DLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEG  349 (543)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~  349 (543)
                      ++++|.+. ..+.+..+++|+.|++++|++++...    ..++|++|++++|++++ +|..   +++|+.|++++|++++
T Consensus       221 ~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          221 VAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             ECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             ECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            88888877 34455557888888888888875332    23688888888888874 4443   3678888888888874


Q ss_pred             ccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCc
Q 040468          350 EIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYP  429 (543)
Q Consensus       350 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (543)
                       ++.   -.++|++|++++|.+.+ ++                                                     
T Consensus       292 -l~~---~~~~L~~L~l~~N~l~~-i~-----------------------------------------------------  313 (454)
T 1jl5_A          292 -LSE---LPPNLYYLNASSNEIRS-LC-----------------------------------------------------  313 (454)
T ss_dssp             -ESC---CCTTCCEEECCSSCCSE-EC-----------------------------------------------------
T ss_pred             -ccC---cCCcCCEEECcCCcCCc-cc-----------------------------------------------------
Confidence             221   12678888888887752 11                                                     


Q ss_pred             ccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhh
Q 040468          430 YALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTF  509 (543)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~  509 (543)
                                                      ..+++|++|++++|+++ .+|..   +++|++|++++|.++ .+|.  
T Consensus       314 --------------------------------~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~-~lp~--  354 (454)
T 1jl5_A          314 --------------------------------DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE--  354 (454)
T ss_dssp             --------------------------------CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred             --------------------------------CCcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCccc-cccc--
Confidence                                            00358999999999999 57764   589999999999999 5665  


Q ss_pred             hccCCCCeeeCCCCcCcc--cCCcccccc
Q 040468          510 SNLKQIESLDLSYNLLHG--KIPSQLTVL  536 (543)
Q Consensus       510 ~~l~~L~~L~l~~n~i~~--~~~~~~~~l  536 (543)
                       .+++|+.|++++|++++  .+|.++..+
T Consensus       355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          355 -LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             -CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             -hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence             47899999999999998  788888877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.4e-34  Score=287.37  Aligned_cols=210  Identities=19%  Similarity=0.191  Sum_probs=97.0

Q ss_pred             hccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC
Q 040468           40 FLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP  119 (543)
Q Consensus        40 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~  119 (543)
                      .+.++++|++|+++++.+++ +|.  +..+++|++|++++|++.+. +  +..+++|++|++++|.++ .++  +.. ++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~~-l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VTP-LT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CTT-CT
T ss_pred             ChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cCC-CC
Confidence            34455555555555555542 332  34555555555555555332 2  445555555555555554 222  222 45


Q ss_pred             CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468          120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL  199 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  199 (543)
                      +|++|++++|.+++ ++  +..+++|++|++++|.+.+ ++   +..+++|++|++++|...+..  .+..+++|+.|++
T Consensus       107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            55555555555543 22  4445555555555555542 22   223445555555555322111  2344455555555


Q ss_pred             CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468          200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      ++|.+++ .+  +..+++|+.|++++|.+...   .+..+++|+.|++++|.+.+. |  +..+++|+.|++++|.+.
T Consensus       178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred             CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence            5554442 22  34444455555554444422   144444444444444444432 2  334444444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=285.96  Aligned_cols=319  Identities=20%  Similarity=0.156  Sum_probs=204.4

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      +.++.++.+++ .+|..+  .+++++|++++|.+++..+.. +.++++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666665 345433  257788888888777444433 47778888888888877777777788888888888888


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCc
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGH  183 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  183 (543)
                      |.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+...
T Consensus        90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCccc
Confidence            8777 666665555778888888888777666677777778888888777776 44434445577777777777777665


Q ss_pred             CcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCC
Q 040468          184 IFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQL  263 (543)
Q Consensus       184 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l  263 (543)
                      ....+..+++|+.|++.+|.+....+..+..+++|+.|++++|......+.......+|+.|++++|.+....+..+..+
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence            55566667777777777777665555566666777777777666554455444444566666666666665544455666


Q ss_pred             CCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468          264 RFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL  342 (543)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l  342 (543)
                      ++|+.|++++|.+.+..+..+. +++|+.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            6666666666665544433332 455555555555555554555555555555555555555444444555555555555


Q ss_pred             cCcccc
Q 040468          343 ANNYIE  348 (543)
Q Consensus       343 ~~n~i~  348 (543)
                      ++|++.
T Consensus       328 ~~N~l~  333 (477)
T 2id5_A          328 DSNPLA  333 (477)
T ss_dssp             CSSCEE
T ss_pred             cCCCcc
Confidence            555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-32  Score=278.17  Aligned_cols=306  Identities=20%  Similarity=0.173  Sum_probs=242.9

Q ss_pred             CCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCE
Q 040468           19 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLAT   98 (543)
Q Consensus        19 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~   98 (543)
                      ...+|++|+++++.+++. | .+..+++|++|++++|.+++ ++   +..+++|++|++++|++.+. +  +..+++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            345899999999999965 5 68999999999999999985 44   57899999999999998764 3  889999999


Q ss_pred             EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468           99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN  178 (543)
Q Consensus        99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n  178 (543)
                      |++++|.++ .++  +.. +++|++|++++|.+++.   .+..+++|++|++++|...+.++   +..+++|++|++++|
T Consensus       111 L~L~~N~l~-~l~--~~~-l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          111 LNCDTNKLT-KLD--VSQ-NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EECCSSCCS-CCC--CTT-CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred             EECCCCcCC-eec--CCC-CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence            999999998 455  444 89999999999999863   37889999999999996554553   445899999999999


Q ss_pred             cCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcc
Q 040468          179 SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI  258 (543)
Q Consensus       179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  258 (543)
                      .+.+..   +..+++|+.|++++|.+++.   .+..+++|+.|++++|.+.. .|  +..+++|+.|++++|.+.+..  
T Consensus       181 ~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--  249 (457)
T 3bz5_A          181 KITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--  249 (457)
T ss_dssp             CCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred             ccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence            998642   77899999999999999855   37889999999999999986 44  788999999999999998764  


Q ss_pred             cccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc--------c
Q 040468          259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN--------R  330 (543)
Q Consensus       259 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--------~  330 (543)
                       +..+++|+.|+++++             +|+.+++++|...+..+  +..+++|+.|++++|...+.+|.        .
T Consensus       250 -~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          250 -VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             -CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             -HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence             456778888887765             34556666776554443  45667788888887765444332        2


Q ss_pred             CCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468          331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       331 l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  373 (543)
                      +..+++|+.|++++|++++ ++  +..+++|+.|++++|++.+
T Consensus       314 l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred             hhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence            4555677777777777775 32  6677777777777777753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.6e-32  Score=271.66  Aligned_cols=311  Identities=20%  Similarity=0.215  Sum_probs=200.4

Q ss_pred             CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468           92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE  171 (543)
Q Consensus        92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~  171 (543)
                      .++++++|+++++.++ .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            4678888999888887 777776666888999999888888666678888888888888888887 55555555678888


Q ss_pred             EEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCc
Q 040468          172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN  251 (543)
Q Consensus       172 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  251 (543)
                      +|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            888888877755544556777777777777777655555666667777777777666532   13445556666666555


Q ss_pred             ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468          252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI  331 (543)
Q Consensus       252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  331 (543)
                      +.+.     ...++                       |++|++++|.+......   ..++|++|++++|.+++.  .++
T Consensus       198 l~~~-----~~~~~-----------------------L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          198 LSTL-----AIPIA-----------------------VEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             CSEE-----ECCSS-----------------------CSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGG
T ss_pred             cccc-----CCCCc-----------------------ceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHH
Confidence            4422     12234                       44455555444433221   124666666666666532  355


Q ss_pred             CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 040468          332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTK  411 (543)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  411 (543)
                      ..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+ +|.....                              
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~------------------------------  293 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP------------------------------  293 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC------------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC------------------------------
Confidence            666666666666666665556666666666666666666542 1111100                              


Q ss_pred             cccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccccc
Q 040468          412 TALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKI  491 (543)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L  491 (543)
                                                                          +++|++|++++|+++ .+|..+..+++|
T Consensus       294 ----------------------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L  320 (390)
T 3o6n_A          294 ----------------------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRL  320 (390)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             ----------------------------------------------------CCCCCEEECCCCcce-ecCccccccCcC
Confidence                                                                456667777777666 566666666777


Q ss_pred             CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468          492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      ++|+|++|.+++. +  +..+++|+.|++++|++.+
T Consensus       321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            7777777776633 2  4556667777777776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.3e-31  Score=263.37  Aligned_cols=307  Identities=23%  Similarity=0.302  Sum_probs=200.6

Q ss_pred             CcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCC
Q 040468           90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS  169 (543)
Q Consensus        90 ~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  169 (543)
                      +..+++|++|+++++.+. .++. +.. +++|++|++++|.+++. +. +.++++|++|++++|.+. .++  .+..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS--ALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch--HHcCCCc
Confidence            446677777777777766 4443 333 67777777777777633 22 666777777777777666 333  2444666


Q ss_pred             CCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468          170 LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN  249 (543)
Q Consensus       170 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  249 (543)
                      |++|++++|.+.....  +..+++|+.|++++|...... ..+..+++|++|++++|.+.                    
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~--------------------  168 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK--------------------  168 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC--------------------
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC--------------------
Confidence            6666666666554322  455556666666555433222 22444555555555555444                    


Q ss_pred             CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468          250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN  329 (543)
Q Consensus       250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  329 (543)
                          +..+  +..+++|+.|++++|.+.+... ...+++|+.+++++|.+++..+  +..+++|++|++++|.+++..+ 
T Consensus       169 ----~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          169 ----DVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             ----CCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ----Cchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence                3211  3344455555555554443222 2235556666666666654433  5667888888888888874433 


Q ss_pred             cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468          330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY  409 (543)
Q Consensus       330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  409 (543)
                       +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+. + .+.                             
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~-----------------------------  284 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN-----------------------------  284 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG-----------------------------
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc-----------------------------
Confidence             78888999999999988743  4578899999999999987531 1 111                             


Q ss_pred             cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468          410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT  489 (543)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~  489 (543)
                                                                           .+++|++|++++|++++..|..+..++
T Consensus       285 -----------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          285 -----------------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             -----------------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             -----------------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccc
Confidence                                                                 167899999999999977788899999


Q ss_pred             ccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468          490 KIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  526 (543)
Q Consensus       490 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~  526 (543)
                      +|++|++++|++++..|  +..+++|+.|++++|+|+
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999999999997666  889999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.6e-32  Score=271.63  Aligned_cols=266  Identities=23%  Similarity=0.252  Sum_probs=203.3

Q ss_pred             cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468           68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR  147 (543)
Q Consensus        68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~  147 (543)
                      .+.++++|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+.++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4689999999999987666666889999999999999998 555544455999999999999999877888999999999


Q ss_pred             EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      |++++|.+. .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.++..   .+..+++|+.+++++|.
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999999 88888877899999999999999988778899999999999999998854   35678999999999998


Q ss_pred             CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCC
Q 040468          228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI  307 (543)
Q Consensus       228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  307 (543)
                      +..     +...++|+.+++++|.+... +..  ..++|+.|++++|.+.+.                         ..+
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-------------------------~~l  244 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-------------------------AWL  244 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-------------------------GGG
T ss_pred             ccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-------------------------HHH
Confidence            762     34557899999999988755 222  235666666666655532                         123


Q ss_pred             CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|+++ .++..+..+++|++|++++|++.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce
Confidence            44556666666666665555555666666666666666665 23444455666666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-31  Score=262.45  Aligned_cols=307  Identities=21%  Similarity=0.267  Sum_probs=216.6

Q ss_pred             ccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCC
Q 040468           41 LYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG  120 (543)
Q Consensus        41 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~  120 (543)
                      +..+++|++|+++++.+. .++.  +..+++|++|++++|++.+..+  +..+++|++|++++|.++ .++ .+. .+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTT
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCc
Confidence            345677777777777665 3443  4667777777777776654433  667777777777777666 343 233 3677


Q ss_pred             CcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468          121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD  200 (543)
Q Consensus       121 L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  200 (543)
                      |++|++++|.+.+. +. +..+++|++|++++|......+.  +..+++|++|++++|.+.....  +..+++|+.|+++
T Consensus       112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            77777777776633 22 66677777777777754433332  4457777777777777664332  5667777777777


Q ss_pred             CCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCC
Q 040468          201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL  280 (543)
Q Consensus       201 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  280 (543)
                      +|.+... +. +..+++|+.+++++|.+....+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+. 
T Consensus       186 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          186 YNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             TSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             CCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence            7776643 22 6677778888888777764433  6677788888888887775533  67778888888888877653 


Q ss_pred             CCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCC
Q 040468          281 PSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE  360 (543)
Q Consensus       281 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~  360 (543)
                      +.+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|  +..+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~  334 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK  334 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence            3444578888888888888764  346788999999999999998888889999999999999999986555  788999


Q ss_pred             CCEEeCCCCccc
Q 040468          361 VQLIDLSHNNLS  372 (543)
Q Consensus       361 L~~L~l~~n~~~  372 (543)
                      |++|++++|+++
T Consensus       335 L~~L~l~~N~i~  346 (347)
T 4fmz_A          335 MDSADFANQVIK  346 (347)
T ss_dssp             CSEESSSCC---
T ss_pred             cceeehhhhccc
Confidence            999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=4.2e-31  Score=278.22  Aligned_cols=311  Identities=20%  Similarity=0.218  Sum_probs=203.4

Q ss_pred             CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCC
Q 040468           92 SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLE  171 (543)
Q Consensus        92 ~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~  171 (543)
                      .+.+++.++++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence            4578888888888887 777776666888888988888888766778888888888888888887 55555566678888


Q ss_pred             EEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCc
Q 040468          172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN  251 (543)
Q Consensus       172 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  251 (543)
                      +|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...   .+..+++|+.+++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            888888877765555566777777777777777766666667777777777777766532   13445566666666655


Q ss_pred             ccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC
Q 040468          252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI  331 (543)
Q Consensus       252 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  331 (543)
                      +.+.     ...++|+.|++++|                       .+.......   .++|+.|++++|.+++  +.++
T Consensus       204 l~~l-----~~~~~L~~L~ls~n-----------------------~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          204 LSTL-----AIPIAVEELDASHN-----------------------SINVVRGPV---NVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             CSEE-----ECCTTCSEEECCSS-----------------------CCCEEECSC---CSCCCEEECCSSCCCC--CGGG
T ss_pred             cccc-----cCCchhheeeccCC-----------------------ccccccccc---CCCCCEEECCCCCCCC--Chhh
Confidence            4432     12234445555444                       444332221   1456666666666653  2456


Q ss_pred             CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 040468          332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTK  411 (543)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  411 (543)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+ +|..+..                              
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------  299 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP------------------------------  299 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc------------------------------
Confidence            666666777777666666666666666777777777666643 1211100                              


Q ss_pred             cccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccccc
Q 040468          412 TALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKI  491 (543)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L  491 (543)
                                                                          +++|++|+|++|.++ .+|..+..+++|
T Consensus       300 ----------------------------------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          300 ----------------------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             ----------------------------------------------------CCCCcEEECCCCCCC-ccCcccccCCCC
Confidence                                                                456677777777766 566666667777


Q ss_pred             CeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468          492 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       492 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                      +.|+|++|.+++. |  +..+++|+.|++++|++.+
T Consensus       327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            7777777776633 2  4556677777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=1.1e-34  Score=296.92  Aligned_cols=391  Identities=16%  Similarity=0.119  Sum_probs=236.4

Q ss_pred             CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccc----cCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCC--
Q 040468           46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFG----SFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLP--  119 (543)
Q Consensus        46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~--  119 (543)
                      +|++|+++++++++.....++..+++|++|++++|++.+    .++..+..+++|++|++++|.+.+..+..++..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            445555555555433333334555566666666665532    22344555666777777766665444444554454  


Q ss_pred             --CCcEEEcCCCcCcc----CCchhhcCCCCCCEEecccccccccCchHhhh----CCCCCCEEEccCCcCCCcC----c
Q 040468          120 --GLMEFNLSRNAFNG----SIPSSFADMQMLARLDISYNQLTGEIPERMAT----GCFSLEILALSNNSLQGHI----F  185 (543)
Q Consensus       120 --~L~~L~L~~~~i~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~----~  185 (543)
                        +|++|++++|.++.    .++..+.++++|++|++++|.+.+..+..+..    ..++|++|++++|.++...    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              57788887777763    34667777788888888888776433333322    2446777777777766433    3


Q ss_pred             ccccCCCCcCEEeCCCCccCccCchhhh-----cCCCCCEEEccCCcCCCc----ccccccCCCCCcEEEccCCcccccC
Q 040468          186 SKKFSLTNLMTLQLDGNNFSGEIPESLS-----KCRRLGGLYLSDNHLSGE----IPRWLGNLSFLVDIIMPNNNLEGLI  256 (543)
Q Consensus       186 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~  256 (543)
                      ..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+...    .+..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            3344567777777777776543332222     244666666666666532    2344445566666666665554321


Q ss_pred             cccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccc----cCCCCCCCCCccEEEccccccccccCccC
Q 040468          257 PIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGSIPNRI  331 (543)
Q Consensus       257 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l  331 (543)
                      ...+.                   +..+ .+++|+.|++++|.+++.    .+..+..+++|++|++++|.+++..+..+
T Consensus       244 ~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          244 MAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             HHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            11100                   0001 134555555555555442    23344557888888888888765433333


Q ss_pred             C-----CCCCCCEEEccCcccccc----cchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 040468          332 D-----RLPQLSYLLLANNYIEGE----IPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRA  402 (543)
Q Consensus       332 ~-----~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  402 (543)
                      .     ..++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+...-.                  
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------------------  366 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG------------------  366 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT------------------
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc------------------
Confidence            2     236899999999988754    4566677899999999999886533322211000                  


Q ss_pred             CCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccc---
Q 040468          403 SGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG---  479 (543)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---  479 (543)
                                                                                 ...++|++|++++|++++   
T Consensus       367 -----------------------------------------------------------~~~~~L~~L~L~~n~i~~~~~  387 (461)
T 1z7x_W          367 -----------------------------------------------------------QPGSVLRVLWLADCDVSDSSC  387 (461)
T ss_dssp             -----------------------------------------------------------STTCCCCEEECTTSCCCHHHH
T ss_pred             -----------------------------------------------------------CCCCceEEEECCCCCCChhhH
Confidence                                                                       004589999999999986   


Q ss_pred             -ccChhhhcccccCeeeCcCCccccccChhhh-----ccCCCCeeeCCCCcCcccCCcc
Q 040468          480 -EIPTQIGYLTKIHALNLSHNNLTGTIPTTFS-----NLKQIESLDLSYNLLHGKIPSQ  532 (543)
Q Consensus       480 -~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~~~  532 (543)
                       .+|..+..+++|++|++++|++++.....+.     ...+|+.|++.++.+....++.
T Consensus       388 ~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             HHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence             6788888999999999999999865443332     2346888888888876544433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=7.1e-31  Score=276.49  Aligned_cols=289  Identities=21%  Similarity=0.190  Sum_probs=216.5

Q ss_pred             cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468           68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR  147 (543)
Q Consensus        68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~  147 (543)
                      .+.+++.++++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4688999999999987777777889999999999999998 454434444999999999999999877888999999999


Q ss_pred             EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      |++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.   .+..+++|+.+++++|.
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            999999999 88888877899999999999999988888899999999999999998854   25678899999999997


Q ss_pred             CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCC
Q 040468          228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI  307 (543)
Q Consensus       228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  307 (543)
                      +..     +...++|+.|++++|.+....+.   ..++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..+..+
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            752     34567899999999998755332   225677888887776642 223335556666666666655555555


Q ss_pred             CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus       275 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             TTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             cCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            55566666666666555 23444455555566666655555 34444555555555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.6e-34  Score=290.66  Aligned_cols=357  Identities=19%  Similarity=0.154  Sum_probs=232.7

Q ss_pred             CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCcc----CCchhhcCCCCCCEEecccccccccCchHhhhCCC-
Q 040468           94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG----SIPSSFADMQMLARLDISYNQLTGEIPERMATGCF-  168 (543)
Q Consensus        94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~----~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-  168 (543)
                      ++|++|+++++.+++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3455666666655533233333335666666666666552    23444555566666666666655333444444444 


Q ss_pred             ---CCCEEEccCCcCCC----cCcccccCCCCcCEEeCCCCccCccCchhhh-----cCCCCCEEEccCCcCCCcc----
Q 040468          169 ---SLEILALSNNSLQG----HIFSKKFSLTNLMTLQLDGNNFSGEIPESLS-----KCRRLGGLYLSDNHLSGEI----  232 (543)
Q Consensus       169 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----  232 (543)
                         +|++|++++|.+..    ..+..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+....    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               46666666666653    2245556666777777777766533222222     2446777777777666422    


Q ss_pred             cccccCCCCCcEEEccCCcccccCccccc-----CCCCCcEEEccCCcCccCC----CCC-CCcccccEEEcCCCccccc
Q 040468          233 PRWLGNLSFLVDIIMPNNNLEGLIPIEFC-----QLRFLRILDLSNNTIFGTL----PSC-FSPAYIEQVHLSKNKIEGR  302 (543)
Q Consensus       233 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~~~~  302 (543)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+.+..    +.. ..+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            34455667777777777776544333332     2457788888887766431    111 1257788888888877653


Q ss_pred             c-----CCCCCCCCCccEEEccccccccc----cCccCCCCCCCCEEEccCcccccccchhhhC-----CCCCCEEeCCC
Q 040468          303 L-----ESVIPDSPNLVTLDLSYNCLHGS----IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-----LKEVQLIDLSH  368 (543)
Q Consensus       303 ~-----~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~l~~  368 (543)
                      .     ...+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     23344678999999999999853    5667778999999999999998655544443     36999999999


Q ss_pred             CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468          369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI  448 (543)
Q Consensus       369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (543)
                      |.+.+.....+...                                                                  
T Consensus       323 n~l~~~~~~~l~~~------------------------------------------------------------------  336 (461)
T 1z7x_W          323 CSFTAACCSHFSSV------------------------------------------------------------------  336 (461)
T ss_dssp             SCCBGGGHHHHHHH------------------------------------------------------------------
T ss_pred             CCCchHHHHHHHHH------------------------------------------------------------------
Confidence            99864311111000                                                                  


Q ss_pred             eeeccCCcccccccccCceeEEEcccCccccccChhhhc-----ccccCeeeCcCCcccc----ccChhhhccCCCCeee
Q 040468          449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY-----LTKIHALNLSHNNLTG----TIPTTFSNLKQIESLD  519 (543)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~  519 (543)
                                  ...+++|++|++++|++++..+..+..     .++|++|+|++|.+++    .+|..+..+++|+.|+
T Consensus       337 ------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          337 ------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             ------------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             ------------HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence                        011579999999999999665655543     6799999999999996    7788999999999999


Q ss_pred             CCCCcCccc
Q 040468          520 LSYNLLHGK  528 (543)
Q Consensus       520 l~~n~i~~~  528 (543)
                      +++|+++..
T Consensus       405 l~~N~i~~~  413 (461)
T 1z7x_W          405 LSNNCLGDA  413 (461)
T ss_dssp             CCSSSCCHH
T ss_pred             CCCCCCCHH
Confidence            999999754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.9e-29  Score=242.59  Aligned_cols=242  Identities=27%  Similarity=0.324  Sum_probs=129.9

Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      +++.++++++.++ .+|..+.   ++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4666666666555 5554442   35666666666655444445555555555555555555 22222233344455555


Q ss_pred             ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468          175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      +++|.+..                         +|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       109 L~~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          109 ISKNHLVE-------------------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             CCSSCCCS-------------------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             CCCCcCCc-------------------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence            54444432                         121111  345555555555443333445555555555555555532


Q ss_pred             --cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCC
Q 040468          255 --LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID  332 (543)
Q Consensus       255 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~  332 (543)
                        ..+..+..+ +|+.|++++|.+.+.....  .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence              334444444 5666666666655432222  24566666666666555555566666666666666666655555566


Q ss_pred             CCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       333 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      .+++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus       239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            6666666666666665 45555666666666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.2e-29  Score=243.01  Aligned_cols=288  Identities=23%  Similarity=0.265  Sum_probs=219.6

Q ss_pred             CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEc
Q 040468          144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL  223 (543)
Q Consensus       144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  223 (543)
                      +++.++++++.+. .+|..+   .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666777777666 566544   357778888888777666667788888899999888888777888888999999999


Q ss_pred             cCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc--CCCCCCCcccccEEEcCCCcccc
Q 040468          224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG--TLPSCFSPAYIEQVHLSKNKIEG  301 (543)
Q Consensus       224 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~  301 (543)
                      ++|.+. ..|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+...+|+.|++++|.+++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            999887 4444333  789999999999988777778899999999999998863  44444443388899999998876


Q ss_pred             ccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCccc
Q 040468          302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN  381 (543)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  381 (543)
                      .+....   ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+. .+|..+..
T Consensus       187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            443322   68888999999888776778888889999999999888766677888889999999988876 45544322


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc
Q 040468          382 TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG  461 (543)
Q Consensus       382 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (543)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (332)
T 2ft3_A          263 --------------------------------------------------------------------------------  262 (332)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceeEEEcccCccccccChhhhc------ccccCeeeCcCCccc--cccChhhhccCCCCeeeCCCCc
Q 040468          462 RILTSMFGIDLSCNKLTGEIPTQIGY------LTKIHALNLSHNNLT--GTIPTTFSNLKQIESLDLSYNL  524 (543)
Q Consensus       462 ~~~~~L~~L~ls~n~l~~~~~~~l~~------l~~L~~L~ls~n~i~--~~~~~~~~~l~~L~~L~l~~n~  524 (543)
                        +++|++|++++|+++...+..|..      .++|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       263 --l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 --LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             --CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             --CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              568888999988888544455543      467888888888876  5677788888888888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-28  Score=239.68  Aligned_cols=243  Identities=24%  Similarity=0.312  Sum_probs=144.8

Q ss_pred             CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468          120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL  199 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  199 (543)
                      +++.++++++.++ .+|..+.  +.+++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            6777888777776 4454442  56777888877777 555545556777777777777777666666777777777777


Q ss_pred             CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc--cCcccccCCCCCcEEEccCCcCc
Q 040468          200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG--LIPIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      ++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            777766 3333322  567777777777665555556667777777777766643  34455666666666666666655


Q ss_pred             cCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhC
Q 040468          278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ  357 (543)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~  357 (543)
                      ......  .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus       185 ~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          185 TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            432222  245555555555555444444455555555555555555443444455555555555555554 44444445


Q ss_pred             CCCCCEEeCCCCccc
Q 040468          358 LKEVQLIDLSHNNLS  372 (543)
Q Consensus       358 l~~L~~L~l~~n~~~  372 (543)
                      +++|++|++++|++.
T Consensus       262 l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          262 HKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CSSCCEEECCSSCCC
T ss_pred             CCCcCEEECCCCcCC
Confidence            555555555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.7e-28  Score=236.77  Aligned_cols=289  Identities=19%  Similarity=0.223  Sum_probs=122.9

Q ss_pred             CCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEE
Q 040468           46 DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFN  125 (543)
Q Consensus        46 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~  125 (543)
                      ++++++++++.++ .+|..+   .+++++|++++|++.+..+..+..+++|++|++++|.+.+..|..+.. +++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            3444444444443 333322   234444444444444443344444444444444444444222222222 44444444


Q ss_pred             cCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC--cCcccccCCCCcCEEeCCCCc
Q 040468          126 LSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG--HIFSKKFSLTNLMTLQLDGNN  203 (543)
Q Consensus       126 L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~  203 (543)
                      +++|.++ .+|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            4444444 2222221  34444444444444 3333333334444444444444331  222333334444444444444


Q ss_pred             cCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCC
Q 040468          204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSC  283 (543)
Q Consensus       204 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  283 (543)
                      +.. .|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++                   
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------  240 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-------------------  240 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-------------------
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-------------------
Confidence            331 121111  3344444444444333333344444444444444444333333333333                   


Q ss_pred             CCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC------CCCCCEEEccCccccc--ccchhh
Q 040468          284 FSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR------LPQLSYLLLANNYIEG--EIPVQL  355 (543)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~i~~--~~~~~l  355 (543)
                          +|+.|++++|.++ ..+..+..+++|++|++++|++++..+..|..      .+.++.|++.+|++..  ..|..|
T Consensus       241 ----~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          241 ----HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             ----TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             ----CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence                4444444444443 22223444555555555555555433333322      2556666777666642  345566


Q ss_pred             hCCCCCCEEeCCCCc
Q 040468          356 CQLKEVQLIDLSHNN  370 (543)
Q Consensus       356 ~~l~~L~~L~l~~n~  370 (543)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            666777777776663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2e-29  Score=243.23  Aligned_cols=254  Identities=30%  Similarity=0.447  Sum_probs=193.7

Q ss_pred             CCcCEEeCCCCccCc--cCchhhhcCCCCCEEEccC-CcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcE
Q 040468          192 TNLMTLQLDGNNFSG--EIPESLSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRI  268 (543)
Q Consensus       192 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  268 (543)
                      .+++.|+++++.+.+  ..|..+..+++|++|++++ |.+....|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            355666666666655  5556666666666666663 5555555666666666777777666666666666666677777


Q ss_pred             EEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCC-CccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468          269 LDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSP-NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY  346 (543)
Q Consensus       269 L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~  346 (543)
                      |++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..++ +|++|++++|++++..|..+..++ |+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            7777776665444433 366777777777777766666677776 899999999999888888888887 9999999999


Q ss_pred             cccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCC
Q 040468          347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGR  426 (543)
Q Consensus       347 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (543)
                      +++..+..+..+++|++|++++|.+.+..|. +..                                             
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~---------------------------------------------  242 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL---------------------------------------------  242 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC---------------------------------------------
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc---------------------------------------------
Confidence            9988888899999999999999998643332 111                                             


Q ss_pred             CCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccC
Q 040468          427 GYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP  506 (543)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~  506 (543)
                                                           +++|++|++++|++++.+|..+..+++|++|+|++|++++.+|
T Consensus       243 -------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          243 -------------------------------------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             -------------------------------------cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence                                                 5789999999999998899999999999999999999998888


Q ss_pred             hhhhccCCCCeeeCCCCcCcccCC
Q 040468          507 TTFSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       507 ~~~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                      .. ..+++|+.+++++|+..+..|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CC-ccccccChHHhcCCCCccCCC
Confidence            77 889999999999999554433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1e-28  Score=238.39  Aligned_cols=249  Identities=28%  Similarity=0.416  Sum_probs=179.8

Q ss_pred             CceeEEEeeCCCCCC--CcchhccCCCCCCEEeccC-CcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCC
Q 040468           21 FQLTSISLSGYIDGG--TFPKFLYHQHDLKNANLSH-LNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLA   97 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~   97 (543)
                      .++++|+|+++.+.+  .+|..+.++++|++|++++ +.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            368888888888888  7788888888888888885 77877777764 7788888888888888778888888888888


Q ss_pred             EEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCC-CCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468           98 TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ-MLARLDISYNQLTGEIPERMATGCFSLEILALS  176 (543)
Q Consensus        98 ~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  176 (543)
                      +|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+.. ++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECc
Confidence            8888888888677777766 78888888888888777788888877 8888888888887666655543 44 7777777


Q ss_pred             CCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468          177 NNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI  256 (543)
Q Consensus       177 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  256 (543)
                      +|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            7777666666666677777777777766643333 455566666666666665555555556666666666666655554


Q ss_pred             cccccCCCCCcEEEccCCc
Q 040468          257 PIEFCQLRFLRILDLSNNT  275 (543)
Q Consensus       257 ~~~l~~l~~L~~L~l~~~~  275 (543)
                      |.. ..+++|+.+++.+|.
T Consensus       285 p~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          285 PQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCS-TTGGGSCGGGTCSSS
T ss_pred             CCC-ccccccChHHhcCCC
Confidence            443 445555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.2e-31  Score=278.37  Aligned_cols=377  Identities=14%  Similarity=0.063  Sum_probs=185.5

Q ss_pred             cCCCCcEEEccCCcccccCCCCCcC-CCC-CCEEEcCCCc-cccCCchhhhcCCCCCcEEEcCCCcCccC----Cchhhc
Q 040468           68 NNTNLETLLLANNSLFGSFRMPIHS-HQK-LATLDVSNNF-FQGHIPVEIGTYLPGLMEFNLSRNAFNGS----IPSSFA  140 (543)
Q Consensus        68 ~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~ls~~~-i~~~~~~~~~~~l~~L~~L~L~~~~i~~~----~~~~l~  140 (543)
                      .+++|++|+|+++.+.+..+..+.. +++ |++|++++|. +.......+...+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4555555555555544333333322 222 5555555554 11111111222255555555555554432    122333


Q ss_pred             CCCCCCEEecccccccccC---chHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccC---ccCchhhhc
Q 040468          141 DMQMLARLDISYNQLTGEI---PERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFS---GEIPESLSK  214 (543)
Q Consensus       141 ~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~  214 (543)
                      .+++|++|++++|.+.+..   ...++..+++|+.|++++|.+.+ .+..+..+++|+.|++......   ......+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4455555555555543111   11122335555555555555443 2334445555555555432211   112233444


Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCc-ccccCCCCCcEEEccCCcCccC-CCCCC-CcccccE
Q 040468          215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP-IEFCQLRFLRILDLSNNTIFGT-LPSCF-SPAYIEQ  291 (543)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~  291 (543)
                      +++|+.+.+.++... ..+..+..+++|++|++++|.+.+... ..+..+++|+.|+++++ +.+. ..... .+++|++
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCE
Confidence            555555555553222 344445555566666666555433221 22345556666666522 2111 11111 1455666


Q ss_pred             EEcCC-----------Cccccc-cCCCCCCCCCccEEEccccccccccCccCCC-CCCCCEEEcc----Ccccccc----
Q 040468          292 VHLSK-----------NKIEGR-LESVIPDSPNLVTLDLSYNCLHGSIPNRIDR-LPQLSYLLLA----NNYIEGE----  350 (543)
Q Consensus       292 L~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~L~~L~l~----~n~i~~~----  350 (543)
                      |++.+           +.+++. .......+++|++|+++.+.+++..+..+.. +++|+.|++.    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            66652           233322 1112234567777777666666555545544 6677777775    4455532    


Q ss_pred             -cchhhhCCCCCCEEeCCCCc--ccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468          351 -IPVQLCQLKEVQLIDLSHNN--LSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG  427 (543)
Q Consensus       351 -~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (543)
                       ++..+.++++|++|+++.|.  +++..+..+                                                
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------------------------------------------------  458 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------------------------------------------------  458 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------------------------------------------------
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------------------------------------------------
Confidence             33335567777777776543  221111000                                                


Q ss_pred             CcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccc-cChhhhcccccCeeeCcCCccccc-c
Q 040468          428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE-IPTQIGYLTKIHALNLSHNNLTGT-I  505 (543)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~i~~~-~  505 (543)
                                                       ...+++|++|++++|++++. ++..+..+++|++|+|++|.+++. .
T Consensus       459 ---------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          459 ---------------------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             ---------------------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             ---------------------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence                                             01156777777777777643 234456677777788877776644 3


Q ss_pred             ChhhhccCCCCeeeCCCCcCccc
Q 040468          506 PTTFSNLKQIESLDLSYNLLHGK  528 (543)
Q Consensus       506 ~~~~~~l~~L~~L~l~~n~i~~~  528 (543)
                      +..+..+++|+.|++++|+++..
T Consensus       506 ~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCccCeeECcCCcCCHH
Confidence            33345677777888887777644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.4e-30  Score=272.16  Aligned_cols=417  Identities=13%  Similarity=0.035  Sum_probs=293.7

Q ss_pred             ceeEEEeeCCCCC---CCcc------------hhccCCCCCCEEeccCCcccccCChhhhhcCCC-CcEEEccCCcc-cc
Q 040468           22 QLTSISLSGYIDG---GTFP------------KFLYHQHDLKNANLSHLNLSGEFPNWLVENNTN-LETLLLANNSL-FG   84 (543)
Q Consensus        22 ~L~~L~L~~~~~~---~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~-~~   84 (543)
                      +|++|++++|...   +..|            .....+++|++|+|+++.+++..+..+...+++ |++|++++|.. ..
T Consensus        74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~  153 (592)
T 3ogk_B           74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT  153 (592)
T ss_dssp             TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred             CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence            6999999886431   1111            222378999999999998876666655443555 99999999862 11


Q ss_pred             -cCCCCCcCCCCCCEEEcCCCccccCCch---hhhcCCCCCcEEEcCCCcCc----cCCchhhcCCCCCCEEeccccccc
Q 040468           85 -SFRMPIHSHQKLATLDVSNNFFQGHIPV---EIGTYLPGLMEFNLSRNAFN----GSIPSSFADMQMLARLDISYNQLT  156 (543)
Q Consensus        85 -~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~~l~~L~~L~L~~~~i~----~~~~~~l~~l~~L~~L~L~~~~~~  156 (543)
                       ..+.....+++|++|++++|.+.+....   .+...+++|++|++++|.++    ..++..+.++++|++|++++|.+.
T Consensus       154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence             1222235789999999999998754322   23344899999999999886    234455678899999999999888


Q ss_pred             ccCchHhhhCCCCCCEEEccCCcCC---CcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCccc
Q 040468          157 GEIPERMATGCFSLEILALSNNSLQ---GHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIP  233 (543)
Q Consensus       157 ~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  233 (543)
                       .++. .+..+++|++|+++.....   ......+..+++|+.+++.+.... ..+..+..+++|++|++++|.+.....
T Consensus       234 -~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~  310 (592)
T 3ogk_B          234 -ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH  310 (592)
T ss_dssp             -GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred             -HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence             5664 4556999999999864322   233456677889999999886433 566777889999999999998653333


Q ss_pred             -ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccC-----------CcCccCCC-C-CCCcccccEEEcCCCcc
Q 040468          234 -RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN-----------NTIFGTLP-S-CFSPAYIEQVHLSKNKI  299 (543)
Q Consensus       234 -~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~-~-~~~~~~L~~L~l~~~~~  299 (543)
                       ..+..+++|+.|++.++......+.....+++|+.|++++           +.+++... . ...+++|++|++..+.+
T Consensus       311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l  390 (592)
T 3ogk_B          311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI  390 (592)
T ss_dssp             HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred             HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence             3467899999999994433333334446788999999994           34432211 1 11278999999988888


Q ss_pred             ccccCCCCCC-CCCccEEEcc----ccccccc-----cCccCCCCCCCCEEEccCcc--cccccchhhh-CCCCCCEEeC
Q 040468          300 EGRLESVIPD-SPNLVTLDLS----YNCLHGS-----IPNRIDRLPQLSYLLLANNY--IEGEIPVQLC-QLKEVQLIDL  366 (543)
Q Consensus       300 ~~~~~~~~~~-~~~L~~L~l~----~~~i~~~-----~~~~l~~~~~L~~L~l~~n~--i~~~~~~~l~-~l~~L~~L~l  366 (543)
                      ++.....+.. +++|++|+++    .+.+++.     ++..+..+++|+.|++++|.  +++.....+. .+++|++|++
T Consensus       391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L  470 (592)
T 3ogk_B          391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL  470 (592)
T ss_dssp             CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred             cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence            7654444443 8899999997    5566642     33346679999999998654  6655555554 4899999999


Q ss_pred             CCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCcc
Q 040468          367 SHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEE  446 (543)
Q Consensus       367 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (543)
                      ++|++++...+.+.                                                                  
T Consensus       471 ~~n~l~~~~~~~~~------------------------------------------------------------------  484 (592)
T 3ogk_B          471 GYVGESDEGLMEFS------------------------------------------------------------------  484 (592)
T ss_dssp             CSCCSSHHHHHHHH------------------------------------------------------------------
T ss_pred             cCCCCCHHHHHHHH------------------------------------------------------------------
Confidence            99987642111110                                                                  


Q ss_pred             ceeeeccCCcccccccccCceeEEEcccCcccccc-ChhhhcccccCeeeCcCCccccccChhh-hccCCCCeeeCCC
Q 040468          447 TIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI-PTQIGYLTKIHALNLSHNNLTGTIPTTF-SNLKQIESLDLSY  522 (543)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~l~~  522 (543)
                                     ..+++|++|++++|.+++.. +.....+++|++|+|++|++++.....+ ..++.++...+..
T Consensus       485 ---------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          485 ---------------RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             ---------------TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             ---------------hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence                           01579999999999987553 3445789999999999999987655444 3566665555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=1.4e-30  Score=275.30  Aligned_cols=299  Identities=17%  Similarity=0.151  Sum_probs=134.4

Q ss_pred             hcCCCCcEEEccCCcccccCCCCCc-CCCCCCEEEcCCC-ccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhc----
Q 040468           67 ENNTNLETLLLANNSLFGSFRMPIH-SHQKLATLDVSNN-FFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFA----  140 (543)
Q Consensus        67 ~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~ls~~-~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~----  140 (543)
                      ..+++|++|+++++.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+..+.    
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4455666666666655443333332 4556666666655 333222223332355666666666655433322222    


Q ss_pred             CCCCCCEEeccccc--ccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc-------cCccCchh
Q 040468          141 DMQMLARLDISYNQ--LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN-------FSGEIPES  211 (543)
Q Consensus       141 ~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~  211 (543)
                      .+++|++|+++++.  +.......+...+++|++|++++|......+..+..+++|+.|++..+.       +. ..+..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence            34456666666554  1111111222235566666666552111233334445566666544332       11 11223


Q ss_pred             hhcCCCCCEE-EccCCcCCCcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccC-CCCCC-Ccc
Q 040468          212 LSKCRRLGGL-YLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGT-LPSCF-SPA  287 (543)
Q Consensus       212 l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-~~~  287 (543)
                      +.++++|+.+ .+.+... ...+..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++| +.+. ..... .++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            4555555555 2222111 122333334555666666655543221 112345556666666555 2211 01111 145


Q ss_pred             cccEEEcCC---------CccccccCCCC-CCCCCccEEEccccccccccCccCC-CCCCCCEEEcc--C----ccccc-
Q 040468          288 YIEQVHLSK---------NKIEGRLESVI-PDSPNLVTLDLSYNCLHGSIPNRID-RLPQLSYLLLA--N----NYIEG-  349 (543)
Q Consensus       288 ~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~--~----n~i~~-  349 (543)
                      +|++|++.+         +.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|+.|++.  +    +.+++ 
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            556665522         22222111111 2356666666666666544333333 35666666666  2    34431 


Q ss_pred             ----ccchhhhCCCCCCEEeCCC
Q 040468          350 ----EIPVQLCQLKEVQLIDLSH  368 (543)
Q Consensus       350 ----~~~~~l~~l~~L~~L~l~~  368 (543)
                          .++..+..+++|+.|++++
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS
T ss_pred             chhhHHHHHHhhCCCccEEeecC
Confidence                1122245566677776655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=231.39  Aligned_cols=279  Identities=18%  Similarity=0.156  Sum_probs=174.6

Q ss_pred             CCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEc
Q 040468          144 MLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL  223 (543)
Q Consensus       144 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  223 (543)
                      .....+.+++.++ .+|..+   .++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|     
T Consensus        32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----  102 (353)
T 2z80_A           32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL-----  102 (353)
T ss_dssp             TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----
T ss_pred             CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC-----
Confidence            3334555555555 555433   2355555555555554444445555555555555555544434444444444     


Q ss_pred             cCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCC-C-CCCcccccEEEcCCC-ccc
Q 040468          224 SDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP-S-CFSPAYIEQVHLSKN-KIE  300 (543)
Q Consensus       224 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~-~~~  300 (543)
                                         ++|++++|.+.+..+..+..+++|++|++++|.+.+... . +..+++|+.|++++| .+.
T Consensus       103 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A          103 -------------------EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             -------------------CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             -------------------CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence                               445554444444333334445555555555555543333 1 222556666666665 345


Q ss_pred             cccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcc
Q 040468          301 GRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLV  380 (543)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  380 (543)
                      +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...+..+..+++|++|++++|.+.+..+..+.
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence            45556677888999999999998877788899999999999999998744334455689999999999988643222211


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccc
Q 040468          381 NTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQ  460 (543)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (543)
                      ...                                                                             
T Consensus       244 ~~~-----------------------------------------------------------------------------  246 (353)
T 2z80_A          244 TGE-----------------------------------------------------------------------------  246 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCceeEEEcccCcccc----ccChhhhcccccCeeeCcCCccccccChh-hhccCCCCeeeCCCCcCcccCC
Q 040468          461 GRILTSMFGIDLSCNKLTG----EIPTQIGYLTKIHALNLSHNNLTGTIPTT-FSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       461 ~~~~~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                        ..+.++.++++++.+.+    .+|..+..+++|++|+|++|.++ .+|.. |..+++|+.|++++|++.+..|
T Consensus       247 --~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          247 --TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence              02345555566555553    46788899999999999999999 55555 5899999999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.1e-26  Score=220.71  Aligned_cols=281  Identities=18%  Similarity=0.191  Sum_probs=220.3

Q ss_pred             CEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCc--ccccccCCCCCcEEEcc
Q 040468          171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE--IPRWLGNLSFLVDIIMP  248 (543)
Q Consensus       171 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~  248 (543)
                      +.++.+++.++... ..+  .+++++|++++|.+....+..+..+++|++|++++|.+...  .+..+..+++|+.|+++
T Consensus        10 ~~l~c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCC-SCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCC-CCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46777877776433 322  36899999999998855555678999999999999988733  24566778999999999


Q ss_pred             CCcccccCcccccCCCCCcEEEccCCcCccCCC--CCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc-
Q 040468          249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP--SCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG-  325 (543)
Q Consensus       249 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-  325 (543)
                      +|.+... +..+..+++|+.|++++|.+.+...  .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            9988854 5568889999999999998886654  34447899999999999988777888889999999999999886 


Q ss_pred             ccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCc
Q 040468          326 SIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGY  405 (543)
Q Consensus       326 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  405 (543)
                      ..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+..                        
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------  221 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC------------------------  221 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT------------------------
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC------------------------
Confidence            57888899999999999999998777888889999999999999886432222211                        


Q ss_pred             cccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhh
Q 040468          406 ASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQI  485 (543)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l  485 (543)
                                                                                +++|++|++++|++++..|..+
T Consensus       222 ----------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          222 ----------------------------------------------------------LNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             ----------------------------------------------------------CTTCCEEECTTSCCCBCSSSSC
T ss_pred             ----------------------------------------------------------cccCCEeECCCCCCcccCHHHH
Confidence                                                                      5789999999999997778888


Q ss_pred             hccc-ccCeeeCcCCccccccC--hhhhccCCCCeeeCCCCcCcccCCccccccC
Q 040468          486 GYLT-KIHALNLSHNNLTGTIP--TTFSNLKQIESLDLSYNLLHGKIPSQLTVLT  537 (543)
Q Consensus       486 ~~l~-~L~~L~ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~  537 (543)
                      ..++ +|++|+|++|++++..+  ....-+.+.+.+.+..+.+.+..|+.+...+
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            8884 89999999999886432  1123344566677788888888888776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.8e-25  Score=215.33  Aligned_cols=262  Identities=22%  Similarity=0.200  Sum_probs=168.6

Q ss_pred             CCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCcc--CchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEE
Q 040468          169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE--IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII  246 (543)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  246 (543)
                      ++++|++++|.+.......+..+++|++|++++|.+...  .+..+..+++|++|++++|.+. ..+..+..+++|+.|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            344444444444433323334444444444444444321  1333444556666666666554 3344456666666666


Q ss_pred             ccCCcccccCc-ccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCcccc-ccCCCCCCCCCccEEEcccccc
Q 040468          247 MPNNNLEGLIP-IEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCL  323 (543)
Q Consensus       247 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i  323 (543)
                      +++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            66666655433 3566667777777777766655544443 6777777777777765 4566777888888888888888


Q ss_pred             ccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 040468          324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRAS  403 (543)
Q Consensus       324 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  403 (543)
                      ++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..+                     
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------------  246 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF---------------------  246 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC---------------------
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh---------------------
Confidence            87767888888889999999888886666677888889999999988876555443321                     


Q ss_pred             CccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccC-
Q 040468          404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP-  482 (543)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-  482 (543)
                                                                                  +++|++|++++|.+++..+ 
T Consensus       247 ------------------------------------------------------------~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          247 ------------------------------------------------------------PSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             ------------------------------------------------------------CTTCCEEECTTCCEECSGGG
T ss_pred             ------------------------------------------------------------hccCCEEEccCCCeecccCh
Confidence                                                                        2478889999988875432 


Q ss_pred             -hhhhcccccCeeeCcCCccccccChhhhcc
Q 040468          483 -TQIGYLTKIHALNLSHNNLTGTIPTTFSNL  512 (543)
Q Consensus       483 -~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l  512 (543)
                       .....+...+.+.+..+.+....|..+.+.
T Consensus       267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          267 QSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             HHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             HHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence             223445566777777788887778776553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.5e-25  Score=211.98  Aligned_cols=223  Identities=22%  Similarity=0.183  Sum_probs=153.8

Q ss_pred             CEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccC
Q 040468          146 ARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD  225 (543)
Q Consensus       146 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  225 (543)
                      +.++.+++.+. .+|.++   .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            44555555554 444332   34566666666666555555566666666666666666655556666667777777777


Q ss_pred             Cc-CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCcccccc
Q 040468          226 NH-LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRL  303 (543)
Q Consensus       226 ~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  303 (543)
                      |. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            65 554445666677777777777777776666667777777777777777765554433 3677777777777777666


Q ss_pred             CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       304 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ...+..+++|++|++++|.+++..+.++..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            666777888888888888888766778888888888888888888665666778888888888888875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=8.3e-26  Score=222.26  Aligned_cols=282  Identities=17%  Similarity=0.123  Sum_probs=144.9

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL  121 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L  121 (543)
                      ..|+.....+.+++.++ .+|..+   .++|++|++++|++.+..+..+..+++|++|++++|.++ .++...+..+++|
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  102 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL  102 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             CCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCC
Confidence            34555556666766665 566543   346777777777766555556666777777777776666 3332222236666


Q ss_pred             cEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch-HhhhCCCCCCEEEccCCc-CCCcCcccccCCCCcCEEeC
Q 040468          122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE-RMATGCFSLEILALSNNS-LQGHIFSKKFSLTNLMTLQL  199 (543)
Q Consensus       122 ~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l  199 (543)
                      ++|++++|.+++..+..+.++++|++|++++|.+. .++. ..+..+++|++|++++|. +....+..+           
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------  170 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-----------  170 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-----------
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc-----------
Confidence            66666666666433334566666666666666655 4443 333445555555555542 333333333           


Q ss_pred             CCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccC
Q 040468          200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGT  279 (543)
Q Consensus       200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  279 (543)
                                   ..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus       171 -------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  237 (353)
T 2z80_A          171 -------------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF  237 (353)
T ss_dssp             -------------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred             -------------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence                         4444444444444444433344444444444455544444332222223344555555555544432


Q ss_pred             CCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc----ccCccCCCCCCCCEEEccCcccccccchh-
Q 040468          280 LPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG----SIPNRIDRLPQLSYLLLANNYIEGEIPVQ-  354 (543)
Q Consensus       280 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~n~i~~~~~~~-  354 (543)
                      ....+.                    .......++.++++++.+.+    .+|.++..+++|+.|++++|+++ .+|.. 
T Consensus       238 ~~~~l~--------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          238 HFSELS--------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             CCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             cccccc--------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence            211100                    00112334444444444432    34455666666666666666666 33333 


Q ss_pred             hhCCCCCCEEeCCCCccccc
Q 040468          355 LCQLKEVQLIDLSHNNLSGH  374 (543)
Q Consensus       355 l~~l~~L~~L~l~~n~~~~~  374 (543)
                      |..+++|++|++++|++.+.
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCC
T ss_pred             HhcCCCCCEEEeeCCCccCc
Confidence            45666677777777766543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=8.6e-27  Score=225.48  Aligned_cols=189  Identities=25%  Similarity=0.199  Sum_probs=101.9

Q ss_pred             EEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcc
Q 040468          173 LALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL  252 (543)
Q Consensus       173 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  252 (543)
                      .+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|+.|++++|.+
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            3444444433333333445566666666666665555566666666666666666653322  56666666666666665


Q ss_pred             cccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccC-
Q 040468          253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRI-  331 (543)
Q Consensus       253 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l-  331 (543)
                      .+..     ..++|+.|++++|.+.+.....  +++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ 
T Consensus        93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           93 QELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            5332     2255666666666555433322  3455666666665555544455555556666666665554444433 


Q ss_pred             CCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          332 DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ..+++|+.|++++|++++. +. ...+++|++|++++|.+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred             hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence            2455566666666655532 22 223555556666655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=7.1e-25  Score=222.22  Aligned_cols=226  Identities=24%  Similarity=0.249  Sum_probs=118.6

Q ss_pred             CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcC
Q 040468          217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLS  295 (543)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~  295 (543)
                      +++.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+ .+++|+.|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44445555554443334444455555555555555544444445555555555555555544333222 24555555555


Q ss_pred             CCccccccCCCCCCCCCccEEEcccc-ccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccccc
Q 040468          296 KNKIEGRLESVIPDSPNLVTLDLSYN-CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH  374 (543)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  374 (543)
                      +|.++......|..+++|++|++++| .+....+..+..+++|+.|++++|+++ .+|. +..+++|++|++++|.+.+.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCcc
Confidence            55555444445555556666666553 333223334555566666666666555 3332 45556666666666655543


Q ss_pred             CCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccC
Q 040468          375 IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKN  454 (543)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (543)
                      .|..+..                                                                         
T Consensus       223 ~~~~~~~-------------------------------------------------------------------------  229 (440)
T 3zyj_A          223 RPGSFQG-------------------------------------------------------------------------  229 (440)
T ss_dssp             CTTTTTT-------------------------------------------------------------------------
T ss_pred             Chhhhcc-------------------------------------------------------------------------
Confidence            3333222                                                                         


Q ss_pred             CcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468          455 MSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  526 (543)
Q Consensus       455 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~  526 (543)
                               +++|++|++++|+++...+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.
T Consensus       230 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          230 ---------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ---------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ---------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence                     345666666666666444555666666666666666666555555566666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.8e-25  Score=216.93  Aligned_cols=236  Identities=18%  Similarity=0.243  Sum_probs=196.4

Q ss_pred             CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEE
Q 040468          191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD  270 (543)
Q Consensus       191 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  270 (543)
                      .+.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            477888888888887 66777778888999999888888 67777888888889998888888 5577788888888888


Q ss_pred             ccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccc
Q 040468          271 LSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE  350 (543)
Q Consensus       271 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~  350 (543)
                      +++|.+.+..+..+.     ...         ....+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .
T Consensus       157 L~~n~~~~~~p~~~~-----~~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLA-----STD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A  220 (328)
T ss_dssp             EEEETTCCCCCSCSE-----EEC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred             CCCCCCccccChhHh-----hcc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence            888766655444321     111         1223556899999999999999 78888999999999999999998 5


Q ss_pred             cchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcc
Q 040468          351 IPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPY  430 (543)
Q Consensus       351 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (543)
                      +|..+..+++|++|++++|++.+.+|..+..                                                 
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-------------------------------------------------  251 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-------------------------------------------------  251 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC-------------------------------------------------
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcC-------------------------------------------------
Confidence            6667899999999999999998777765443                                                 


Q ss_pred             cccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhh
Q 040468          431 ALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFS  510 (543)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~  510 (543)
                                                       +++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|+++.
T Consensus       252 ---------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          252 ---------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             ---------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             ---------------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence                                             56899999999998889999999999999999999999999999999


Q ss_pred             ccCCCCeeeCCCCcCcc
Q 040468          511 NLKQIESLDLSYNLLHG  527 (543)
Q Consensus       511 ~l~~L~~L~l~~n~i~~  527 (543)
                      .+++|+.+++..+.+..
T Consensus       299 ~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          299 QLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GSCTTCEEECCGGGSCC
T ss_pred             hccCceEEeCCHHHHHH
Confidence            99999999999887763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.5e-28  Score=257.99  Aligned_cols=418  Identities=13%  Similarity=0.095  Sum_probs=284.8

Q ss_pred             CceeEEEeeCCCCCCCc---------------chhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCC-cccc
Q 040468           21 FQLTSISLSGYIDGGTF---------------PKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANN-SLFG   84 (543)
Q Consensus        21 ~~L~~L~L~~~~~~~~~---------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~   84 (543)
                      .+|++|+++++.....+               +.....+++|++|+++++.+++..+..+...+++|++|++++| .+.+
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            37999999998633211               1223578999999999999887777666557999999999999 4433


Q ss_pred             c-CCCCCcCCCCCCEEEcCCCccccCCchhh---hcCCCCCcEEEcCCCc--Ccc-CCchhhcCCCCCCEEecccccccc
Q 040468           85 S-FRMPIHSHQKLATLDVSNNFFQGHIPVEI---GTYLPGLMEFNLSRNA--FNG-SIPSSFADMQMLARLDISYNQLTG  157 (543)
Q Consensus        85 ~-~~~~~~~~~~L~~L~ls~~~i~~~~~~~~---~~~l~~L~~L~L~~~~--i~~-~~~~~l~~l~~L~~L~L~~~~~~~  157 (543)
                      . .+..+..+++|++|++++|.+++..+..+   ...+++|++|++++|.  +.. .+...+.++++|++|++++|....
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence            2 33334579999999999999875444333   2347799999999986  321 122233557999999999984332


Q ss_pred             cCchHhhhCCCCCCEEEccCCcC-------CCcCcccccCCCCcCEE-eCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468          158 EIPERMATGCFSLEILALSNNSL-------QGHIFSKKFSLTNLMTL-QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       158 ~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  229 (543)
                      .++ ..+..+++|++|+++.+..       .+ ....+..+++|+.+ .+.+... ..++..+..+++|++|++++|.+.
T Consensus       226 ~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          226 KLA-TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             HHH-HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             HHH-HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence            444 3445599999999776532       21 23356788999998 3433322 234455567899999999999865


Q ss_pred             Ccc-cccccCCCCCcEEEccCCccccc-CcccccCCCCCcEEEccCC---------cCccCCCC-CC-CcccccEEEcCC
Q 040468          230 GEI-PRWLGNLSFLVDIIMPNNNLEGL-IPIEFCQLRFLRILDLSNN---------TIFGTLPS-CF-SPAYIEQVHLSK  296 (543)
Q Consensus       230 ~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~---------~~~~~~~~-~~-~~~~L~~L~l~~  296 (543)
                      ... ...+..+++|+.|++.+| +.+. .+.....+++|+.|++.++         .+++.... .. .+++|+.|.+..
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~  381 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC  381 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence            332 233568999999999988 4322 2222335789999999542         22221111 11 268899998888


Q ss_pred             CccccccCCCCC-CCCCccEEEcc--c----cccccc-----cCccCCCCCCCCEEEccCcccccccchhhhC-CCCCCE
Q 040468          297 NKIEGRLESVIP-DSPNLVTLDLS--Y----NCLHGS-----IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQ-LKEVQL  363 (543)
Q Consensus       297 ~~~~~~~~~~~~-~~~~L~~L~l~--~----~~i~~~-----~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~  363 (543)
                      +.+++.....+. .+++|++|+++  +    +.+++.     ++..+..+++|+.|++++ .+++.....+.. +++|+.
T Consensus       382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~  460 (594)
T 2p1m_B          382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM  460 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred             CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence            888765433333 57899999999  3    455521     122356789999999988 777665666665 899999


Q ss_pred             EeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCC
Q 040468          364 IDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMG  443 (543)
Q Consensus       364 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (543)
                      |++++|.+++..+..+.                                                               
T Consensus       461 L~L~~~~i~~~~~~~l~---------------------------------------------------------------  477 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVL---------------------------------------------------------------  477 (594)
T ss_dssp             EEEESCCSSHHHHHHHH---------------------------------------------------------------
T ss_pred             eeccCCCCcHHHHHHHH---------------------------------------------------------------
Confidence            99999987543221110                                                               


Q ss_pred             CccceeeeccCCcccccccccCceeEEEcccCccccccCh-hhhcccccCeeeCcCCccccccChhh-hccCCCCeeeCC
Q 040468          444 KEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPT-QIGYLTKIHALNLSHNNLTGTIPTTF-SNLKQIESLDLS  521 (543)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~l~  521 (543)
                                        ..+++|++|++++|.+++..+. ....+++|++|+|++|+++....+.+ ..+++|+...+.
T Consensus       478 ------------------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          478 ------------------SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             ------------------HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             ------------------hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence                              0167899999999999754443 45668999999999999976555555 567888766666


Q ss_pred             CCc
Q 040468          522 YNL  524 (543)
Q Consensus       522 ~n~  524 (543)
                      .+.
T Consensus       540 ~~~  542 (594)
T 2p1m_B          540 ERG  542 (594)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.2e-24  Score=219.38  Aligned_cols=246  Identities=23%  Similarity=0.196  Sum_probs=157.2

Q ss_pred             CCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEc
Q 040468           47 LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNL  126 (543)
Q Consensus        47 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L  126 (543)
                      .+.++.++..++ .+|..+   .+++++|++++|++.+..+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            455666665555 455533   356667777777666666666667777777777776666 333333333667777777


Q ss_pred             CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC-cCCCcCcccccCCCCcCEEeCCCCccC
Q 040468          127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN-SLQGHIFSKKFSLTNLMTLQLDGNNFS  205 (543)
Q Consensus       127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~  205 (543)
                      ++|.++...+..+.++++|++|++++|.+. .++...+..+++|++|++++| .+.......+..+++|++|++++|.+.
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            777666554555666677777777777666 555555556667777777663 333333345566677777777777666


Q ss_pred             ccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC
Q 040468          206 GEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS  285 (543)
Q Consensus       206 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  285 (543)
                      .. + .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.......+.
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            32 3 355666777777777777666666677777777777777777766666677777777777777777655555443


Q ss_pred             -cccccEEEcCCCccc
Q 040468          286 -PAYIEQVHLSKNKIE  300 (543)
Q Consensus       286 -~~~L~~L~l~~~~~~  300 (543)
                       +++|+.|++++|.+.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence             667777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.1e-25  Score=216.32  Aligned_cols=224  Identities=19%  Similarity=0.230  Sum_probs=129.6

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L  124 (543)
                      +++++|+++++.+. .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.. +++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEE
Confidence            44555555555544 444433 33555555555555543 44444555555555555555554 44444444 4555555


Q ss_pred             EcCCCcCccCCchhhc---------CCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcC
Q 040468          125 NLSRNAFNGSIPSSFA---------DMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLM  195 (543)
Q Consensus       125 ~L~~~~i~~~~~~~l~---------~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~  195 (543)
                      ++++|.+.+.+|..+.         ++++|++|++++|.+. .+|..+. .+++|++|++++|.+.+ .+..+..+++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            5555444444444333         3666666666666666 5555433 36666666666666663 333456666666


Q ss_pred             EEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCc
Q 040468          196 TLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT  275 (543)
Q Consensus       196 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  275 (543)
                      +|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            66666666665666666666667777776666666666666667777777777766666666677777777777666554


Q ss_pred             C
Q 040468          276 I  276 (543)
Q Consensus       276 ~  276 (543)
                      +
T Consensus       313 ~  313 (328)
T 4fcg_A          313 Q  313 (328)
T ss_dssp             S
T ss_pred             H
Confidence            3

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.1e-24  Score=207.43  Aligned_cols=163  Identities=20%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCc-CccCCCCCC-CcccccEEE
Q 040468          216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT-IFGTLPSCF-SPAYIEQVH  293 (543)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~  293 (543)
                      +++++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|. +....+..+ .+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            344455555544443333444455555555555555544444445555555555555554 433322222 245555555


Q ss_pred             cCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468          294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       294 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  373 (543)
                      +++|.+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            55555555555556666666666666666664444556666666666666666664444456666666666666666654


Q ss_pred             cCCCC
Q 040468          374 HIPPC  378 (543)
Q Consensus       374 ~~~~~  378 (543)
                      ..|..
T Consensus       192 ~~~~~  196 (285)
T 1ozn_A          192 VHPHA  196 (285)
T ss_dssp             ECTTT
T ss_pred             cCHhH
Confidence            43433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.2e-24  Score=217.39  Aligned_cols=249  Identities=20%  Similarity=0.175  Sum_probs=169.4

Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      ..+.++.++..++ .+|..+.   ++++.|++++|.+....+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            4567888888887 7887664   58889999999988777788888889999999988887 56656666688888888


Q ss_pred             ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468          175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      +++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++++.....                       
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------  175 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-----------------------  175 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------------
Confidence            888887766666677777777777777777655555566666666666665332211                       


Q ss_pred             cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCC
Q 040468          255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL  334 (543)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~  334 (543)
                      ..+..+..+++|+.|++++|.+.. .+.+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             eCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence            222234444444555555444442 2233345566666666666666666666677777777777777776666667777


Q ss_pred             CCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77777777777777555556667777777777777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.8e-24  Score=223.20  Aligned_cols=270  Identities=22%  Similarity=0.290  Sum_probs=206.6

Q ss_pred             CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468          119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ  198 (543)
Q Consensus       119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  198 (543)
                      .+++.|+++++.++ .+|..+.  ++|++|++++|.+. .+|.    .+++|++|++++|.++....    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            36899999999988 6676654  78999999999988 6765    47899999999999875332    678999999


Q ss_pred             CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                      +++|.+.. ++.   .+++|+.|++++|.+.. +|.   .+++|+.|++++|.+.+. |.   .+++|+.|++++|.+..
T Consensus       108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence            99998874 343   56789999999998874 443   247889999999888754 32   34678888999888876


Q ss_pred             CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468          279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL  358 (543)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l  358 (543)
                      ..   ..+++|+.|++++|.+++...    ..++|+.|++++|.++ .+|.   .+++|+.|++++|++++ +|   ..+
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred             Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence            43   236788888888888875432    2368888888888888 4443   24778888888888874 45   456


Q ss_pred             CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468          359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR  438 (543)
Q Consensus       359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (543)
                      ++|++|++++|.+. .+|.     .                                                       
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~-----~-------------------------------------------------------  259 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM-----L-------------------------------------------------------  259 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC-----C-------------------------------------------------------
T ss_pred             CcCcEEECCCCCCC-cCCc-----c-------------------------------------------------------
Confidence            78888888888775 2332     0                                                       


Q ss_pred             CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCC
Q 040468          439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ  514 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~  514 (543)
                                               +++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..+++
T Consensus       260 -------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          260 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             -------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             -------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence                                     567888889988888 77888888888999999998888888877766653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=4.6e-24  Score=217.03  Aligned_cols=249  Identities=20%  Similarity=0.145  Sum_probs=166.4

Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      ..+.++.++..++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            3567888887777 7776654   58888888888888777778888888888888888887 55555555677788888


Q ss_pred             ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468          175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      +++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++++...                       ..
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-----------------------~~  186 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-----------------------EY  186 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-----------------------CE
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-----------------------cc
Confidence            8887777665555666777777777777666444445556666666666553222                       21


Q ss_pred             cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCC
Q 040468          255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL  334 (543)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~  334 (543)
                      ..+..+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            2222344445555555555554432 333345666666666666666666666777777777777777776666677777


Q ss_pred             CCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777777777777555556667777777777777764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.9e-26  Score=219.12  Aligned_cols=245  Identities=20%  Similarity=0.154  Sum_probs=154.0

Q ss_pred             hhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCC
Q 040468          113 EIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT  192 (543)
Q Consensus       113 ~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~  192 (543)
                      .++..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+   +..+++|++|++++|.+.+..     ..+
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~   99 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGP   99 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCC
Confidence            333334445555555555544444445555555555555554442221   333455555555555443211     225


Q ss_pred             CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccc-cCCCCCcEEEc
Q 040468          193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEF-CQLRFLRILDL  271 (543)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l  271 (543)
                      +|+.|++++|.+....+.   .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++
T Consensus       100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            555555555555433222   24556666666666665555556666667777777776665544444 35677777777


Q ss_pred             cCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc-cc
Q 040468          272 SNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE-GE  350 (543)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-~~  350 (543)
                      ++|.+.+.. ....+++|+.|++++|.+++..+. +..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.
T Consensus       177 ~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          177 QYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             TTSCCCEEE-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             CCCcCcccc-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence            777776542 223367788888888888765443 677889999999999998 67788889999999999999998 66


Q ss_pred             cchhhhCCCCCCEEeCCCCcc
Q 040468          351 IPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       351 ~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      .+..+..+++|+.+++++++.
T Consensus       254 ~~~~~~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          254 LRDFFSKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccccceEEECCCchh
Confidence            778888899999999986643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.1e-23  Score=217.62  Aligned_cols=241  Identities=24%  Similarity=0.275  Sum_probs=178.3

Q ss_pred             CCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEE
Q 040468           94 QKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEIL  173 (543)
Q Consensus        94 ~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  173 (543)
                      .+++.|+++++.++ .+|..+.   ++|++|++++|.++ .+|.   .+++|++|++++|.+. .+|.    .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence            35888888888888 7777664   68888888888887 4444   4678888888888887 6665    47888888


Q ss_pred             EccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc
Q 040468          174 ALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE  253 (543)
Q Consensus       174 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  253 (543)
                      ++++|.+.....    .+++|+.|++++|.++. +|.   .+++|++|++++|.+.. .+.   .+++|+.|++++|.+.
T Consensus       107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             EECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence            888888775432    46788888888888774 443   24788888888888773 332   3567888888888887


Q ss_pred             ccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468          254 GLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR  333 (543)
Q Consensus       254 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~  333 (543)
                      .. |   ..+++|+.|++++|.+.+....   +++|+.|++++|.++....    .+++|++|++++|.+++ +|   ..
T Consensus       175 ~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~  239 (622)
T 3g06_A          175 SL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VL  239 (622)
T ss_dssp             CC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred             CC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CC
Confidence            64 3   3467888888888888753322   4788888888888875432    24788888888888884 44   45


Q ss_pred             CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCc
Q 040468          334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL  379 (543)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  379 (543)
                      +++|+.|++++|+++ .+|.   .+++|+.|++++|.+. .+|+.+
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l  280 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL  280 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence            678888888888887 4554   5678888888888876 555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.9e-25  Score=227.04  Aligned_cols=147  Identities=24%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCC
Q 040468          217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK  296 (543)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  296 (543)
                      +|+.|++++|.+....|..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+    .++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            44444444444444334444444444444444444443322  4444445555555544443221    14455555555


Q ss_pred             CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhh-CCCCCCEEeCCCCccc
Q 040468          297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLC-QLKEVQLIDLSHNNLS  372 (543)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~  372 (543)
                      |.+++..+.   .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+.
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            555443332   234555666666655554455555555566666666655554454443 4556666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=9.1e-26  Score=217.74  Aligned_cols=246  Identities=22%  Similarity=0.221  Sum_probs=172.9

Q ss_pred             CCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC-Cccccccc-------CCCCCcEEEccCCcccccCcccc--
Q 040468          191 LTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS-GEIPRWLG-------NLSFLVDIIMPNNNLEGLIPIEF--  260 (543)
Q Consensus       191 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l--  260 (543)
                      .++|+.+++.+|.+  ..|..+...  ++.|++++|.+. ...+..+.       .+++|++|++++|.+.+..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555554  333333322  555555555542 12222222       46667777777777665555554  


Q ss_pred             cCCCCCcEEEccCCcCccCCCCCCC-c-----ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc--cCccC-
Q 040468          261 CQLRFLRILDLSNNTIFGTLPSCFS-P-----AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--IPNRI-  331 (543)
Q Consensus       261 ~~l~~L~~L~l~~~~~~~~~~~~~~-~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l-  331 (543)
                      ..+++|+.|++++|.+.+. +..+. .     ++|+.|++++|.+.+..+..+..+++|++|++++|++.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6667777777777776655 32221 2     7888888888888877777888999999999999987653  23333 


Q ss_pred             -CCCCCCCEEEccCccccc--ccc-hhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 040468          332 -DRLPQLSYLLLANNYIEG--EIP-VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYAS  407 (543)
Q Consensus       332 -~~~~~L~~L~l~~n~i~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  407 (543)
                       ..+++|+.|++++|++++  .++ ..+..+++|++|++++|.+.+..|....                           
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------  249 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC---------------------------  249 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC---------------------------
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh---------------------------
Confidence             889999999999999983  222 3456789999999999998754421110                           


Q ss_pred             cccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhc
Q 040468          408 SYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGY  487 (543)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  487 (543)
                                                                            ..+++|++|++++|+++ .+|..+. 
T Consensus       250 ------------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          250 ------------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             ------------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             ------------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc-
Confidence                                                                  00568999999999999 8888777 


Q ss_pred             ccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcc
Q 040468          488 LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       488 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  527 (543)
                       ++|++|+|++|++++. |. +..+++|+.|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             8999999999999965 65 8999999999999999974

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.2e-24  Score=220.53  Aligned_cols=234  Identities=24%  Similarity=0.236  Sum_probs=161.4

Q ss_pred             CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      +|+.|++++|.+.+..|..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+..+     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            45555555555554444455555555555555555543222  5556666666666666554321     2567777777


Q ss_pred             CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCC-CCCCCCEEEccCccccccc
Q 040468          273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID-RLPQLSYLLLANNYIEGEI  351 (543)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~n~i~~~~  351 (543)
                      +|.+.+..+..  +++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. 
T Consensus       108 ~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             SSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            77666544332  46778888888888777666777788888888888888876676665 688888888888888754 


Q ss_pred             chhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCccc
Q 040468          352 PVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYA  431 (543)
Q Consensus       352 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (543)
                      +. ...+++|++|++++|.+.+ +|+.+..                                                  
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~--------------------------------------------------  212 (487)
T 3oja_A          185 KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS--------------------------------------------------  212 (487)
T ss_dssp             EC-CCCCTTCCEEECCSSCCCE-ECGGGGG--------------------------------------------------
T ss_pred             cc-cccCCCCCEEECCCCCCCC-CCHhHcC--------------------------------------------------
Confidence            32 3458888888888888864 3332221                                                  


Q ss_pred             ccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccc-cccChhhh
Q 040468          432 LDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT-GTIPTTFS  510 (543)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~-~~~~~~~~  510 (543)
                                                      +++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.++.
T Consensus       213 --------------------------------l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          213 --------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             --------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             --------------------------------CCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence                                            568888888888888 57877888888888888888887 56777788


Q ss_pred             ccCCCCeeeCC
Q 040468          511 NLKQIESLDLS  521 (543)
Q Consensus       511 ~l~~L~~L~l~  521 (543)
                      .+++|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            88888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.3e-22  Score=192.25  Aligned_cols=132  Identities=23%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             CCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468          241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS  319 (543)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  319 (543)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444444433344444444444444444443333222 24455555555555554444455555555555555


Q ss_pred             ccccccccCccCCCCCCCCEEEccCcccccc-cchhhhCCCCCCEEeCCCCccc
Q 040468          320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGE-IPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       320 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +|.+.+..+..+..+++|+.|++++|++++. +|..+..+++|++|++++|.+.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            5555544444455555566666666555532 3555555566666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.6e-24  Score=208.98  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=56.5

Q ss_pred             CCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccc-cCCchhhh------cCCCCCcEEEcCCCcCccCCchhh--
Q 040468           69 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQ-GHIPVEIG------TYLPGLMEFNLSRNAFNGSIPSSF--  139 (543)
Q Consensus        69 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~~~~~------~~l~~L~~L~L~~~~i~~~~~~~l--  139 (543)
                      .++|++|+++++.+  ..|..+...  |++|++++|.+. ..++..+.      ..+++|++|++++|.+++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555554  333322222  555555555442 12333332      014455555555555554444443  


Q ss_pred             cCCCCCCEEecccccccccCchHhhhCC-----CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCc
Q 040468          140 ADMQMLARLDISYNQLTGEIPERMATGC-----FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNN  203 (543)
Q Consensus       140 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~  203 (543)
                      ..+++|++|++++|.+.+. |..+.. +     ++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            4455555555555555422 322221 2     444444444444444333444444444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.4e-21  Score=184.25  Aligned_cols=153  Identities=24%  Similarity=0.292  Sum_probs=80.9

Q ss_pred             CCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcC
Q 040468          217 RLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLS  295 (543)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~  295 (543)
                      ..+.++++++.+. ..|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.......+. +++|+.|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3556666666655 2333222  4566666666666655555566666666666666655544443332 4555555555


Q ss_pred             CCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +|.+++.....+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            55555444444455555555555555555444444555555555555555555333333445555555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=9e-22  Score=186.39  Aligned_cols=208  Identities=21%  Similarity=0.241  Sum_probs=111.3

Q ss_pred             CCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeC
Q 040468          120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQL  199 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  199 (543)
                      +|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4555555555555444445555555555555555555 333333444555555555555555444445555566666666


Q ss_pred             CCCccCccCchhhhcCCCCCEEEccCCcCCCc-ccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          200 DGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE-IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       200 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                      .+|.+....+..+..+++|++|++++|.+... .|..+..+++|+.|++++|.+.+..+..+..+++|+.+.+       
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l-------  180 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------  180 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence            66555544333455556666666666655532 3555666666666666666666554444444333331000       


Q ss_pred             CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468          279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE  348 (543)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~  348 (543)
                                  .|++++|.+++.....+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       181 ------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          181 ------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence                        344444444433333332 235666666666666444445566666777777776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.6e-22  Score=188.52  Aligned_cols=133  Identities=22%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             hcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEE
Q 040468          213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQV  292 (543)
Q Consensus       213 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  292 (543)
                      ..+++|+.+++.++.+..  ...+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.               
T Consensus        38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~---------------   98 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ---------------   98 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC---------------
T ss_pred             ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC---------------
Confidence            345556666666555542  12245555555555555555432  24444555555555555444               


Q ss_pred             EcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       293 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                              +..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus        99 --------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           99 --------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             --------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             --------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence                    433334444555555555555555443444455555555555555555333344445555555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=5.6e-21  Score=180.15  Aligned_cols=199  Identities=28%  Similarity=0.300  Sum_probs=94.0

Q ss_pred             eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      .+.+++++++++ .+|..+.  +++++|++++|.++ .++...+.++++|++|++++|++....+..+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            445555555555 2333221  44555555555554 2333223455555555555555544444444555555555555


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG  182 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  182 (543)
                      +|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE
Confidence            55555 344333333555555555555555444444455555555555555544 3444433344455555555554444


Q ss_pred             cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            333334444444444444444443323333344444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.2e-21  Score=183.36  Aligned_cols=156  Identities=21%  Similarity=0.199  Sum_probs=101.6

Q ss_pred             hhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccE
Q 040468          212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQ  291 (543)
Q Consensus       212 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~  291 (543)
                      +..+++++.++++++.+. ..|..+  .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+.... ..+++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            456677888888887776 344333  25778888888888777677777788888888888777654332 34566666


Q ss_pred             EEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468          292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       292 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      |++++|.++. .+..+..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            6666666653 333455666666666666666654455566666666666666666644445555666666666666665


Q ss_pred             c
Q 040468          372 S  372 (543)
Q Consensus       372 ~  372 (543)
                      .
T Consensus       161 ~  161 (290)
T 1p9a_G          161 T  161 (290)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=188.48  Aligned_cols=226  Identities=20%  Similarity=0.221  Sum_probs=167.6

Q ss_pred             CCCEEEccCCcCCCcccc---cccCCCCCcEEEccCCcccccCcccc--cCCCCCcEEEccCCcCccCCCC-----CCCc
Q 040468          217 RLGGLYLSDNHLSGEIPR---WLGNLSFLVDIIMPNNNLEGLIPIEF--CQLRFLRILDLSNNTIFGTLPS-----CFSP  286 (543)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~-----~~~~  286 (543)
                      .++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|+.|++++|.+.+..+.     ...+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            455555555544311100   11223557777777777776666665  6777788888887777653331     1236


Q ss_pred             ccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc--c--CccCCCCCCCCEEEccCcccccccch----hhhCC
Q 040468          287 AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS--I--PNRIDRLPQLSYLLLANNYIEGEIPV----QLCQL  358 (543)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~--~~~l~~~~~L~~L~l~~n~i~~~~~~----~l~~l  358 (543)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|+.|++++|+++. ++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            7888899999988877778888999999999999987642  1  3345788999999999999973 332    35788


Q ss_pred             CCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCC
Q 040468          359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSR  438 (543)
Q Consensus       359 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (543)
                      ++|++|++++|.+.+..|+.+..+..                                                      
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~------------------------------------------------------  249 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMW------------------------------------------------------  249 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCC------------------------------------------------------
T ss_pred             CCCCEEECCCCCCCccchhhHHhccC------------------------------------------------------
Confidence            99999999999998766665544321                                                      


Q ss_pred             CCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCee
Q 040468          439 TPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESL  518 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  518 (543)
                                               +++|++|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|
T Consensus       250 -------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          250 -------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             -------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             -------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence                                     468999999999999 7888775  8999999999999954 43 6889999999


Q ss_pred             eCCCCcCcc
Q 040468          519 DLSYNLLHG  527 (543)
Q Consensus       519 ~l~~n~i~~  527 (543)
                      ++++|++++
T Consensus       300 ~L~~N~l~~  308 (310)
T 4glp_A          300 TLDGNPFLV  308 (310)
T ss_dssp             ECSSTTTSC
T ss_pred             ECcCCCCCC
Confidence            999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.1e-20  Score=178.35  Aligned_cols=188  Identities=24%  Similarity=0.285  Sum_probs=124.4

Q ss_pred             ccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCc
Q 040468          188 KFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR  267 (543)
Q Consensus       188 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  267 (543)
                      +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            33444444555544444421  2344555555555555555544444455566666666666666655555556666666


Q ss_pred             EEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468          268 ILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY  346 (543)
Q Consensus       268 ~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~  346 (543)
                      .|++++|.+.+..+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            66666666665544433 36677777777777776666667788888888888888887667778888889999999888


Q ss_pred             cccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC
Q 040468          347 IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL  384 (543)
Q Consensus       347 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  384 (543)
                      +.       +.+++|++++++.|.+.+.+|..+..+..
T Consensus       217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            76       34667888888889888888887766553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.9e-20  Score=176.73  Aligned_cols=195  Identities=26%  Similarity=0.199  Sum_probs=80.3

Q ss_pred             eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      ++++++++++++ .+|..+  .+++++|++++|.+++..+. .+..+++|++|++++|.+.+..+.  ..+++|++|+++
T Consensus        12 l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           12 HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             CCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             ccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            444444444444 223222  13444444444444422222 234444444444444444332221  344444444444


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG  182 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  182 (543)
                      +|.+. .+|..+.. +++|++|++++|++++..+..|.++++|++|++++|++. .++.+.+..+++|+.|++++|++..
T Consensus        86 ~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             SSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCc
Confidence            44444 33333322 444444444444444333334444444444444444444 3333333334444444444444443


Q ss_pred             cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      .....+..+++|+.|++++|.+. .+|..+....+|+.+++.+|.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            33333333444444444444443 223333333334444444333

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=5.9e-22  Score=193.47  Aligned_cols=254  Identities=14%  Similarity=0.155  Sum_probs=153.9

Q ss_pred             CCCEEeccCCcccccCChhhhhcC--CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccC-CchhhhcCCCCCc
Q 040468           46 DLKNANLSHLNLSGEFPNWLVENN--TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGH-IPVEIGTYLPGLM  122 (543)
Q Consensus        46 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-~~~~~~~~l~~L~  122 (543)
                      .++.++++++.+..    ..+..+  ++++.|+++++.+.+..+. +..+++|++|++++|.+.+. ++..+ ..+++|+
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence            36667777665541    223444  6677777777766554443 44567777777777766533 33333 3367777


Q ss_pred             EEEcCCCcCccCCchhhcCCCCCCEEecccc-cccccCchHhhhCCCCCCEEEccCC-cCCCc-CcccccCCC-CcCEEe
Q 040468          123 EFNLSRNAFNGSIPSSFADMQMLARLDISYN-QLTGEIPERMATGCFSLEILALSNN-SLQGH-IFSKKFSLT-NLMTLQ  198 (543)
Q Consensus       123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~  198 (543)
                      +|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            7777777766556666667777777777777 4543222333445777777777777 66543 334455667 777777


Q ss_pred             CCCCc--cC-ccCchhhhcCCCCCEEEccCCc-CCCcccccccCCCCCcEEEccCCc-ccccCcccccCCCCCcEEEccC
Q 040468          199 LDGNN--FS-GEIPESLSKCRRLGGLYLSDNH-LSGEIPRWLGNLSFLVDIIMPNNN-LEGLIPIEFCQLRFLRILDLSN  273 (543)
Q Consensus       199 l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~  273 (543)
                      +++|.  ++ ...+..+..+++|+.|++++|. ++...+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            77773  33 2344555667777777777777 554555667777777777777774 3222223466677788888877


Q ss_pred             CcCccCCCCCCC-cccccEEEcCCCccccccCCCCC
Q 040468          274 NTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIP  308 (543)
Q Consensus       274 ~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~  308 (543)
                      | +....  +.. ...++.|++++|.+++..+..+.
T Consensus       282 ~-i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          282 I-VPDGT--LQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             S-SCTTC--HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             c-cCHHH--HHHHHhhCcceEEecccCccccCCccc
Confidence            7 22111  111 23466677777777766555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=3.8e-20  Score=172.40  Aligned_cols=105  Identities=22%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             CcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468          266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN  345 (543)
Q Consensus       266 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n  345 (543)
                      .+.++++++.+...+...  ++.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            344555555444332222  245555555555555555555555666666666666666555555566666666666666


Q ss_pred             ccccccchhhhCCCCCCEEeCCCCccc
Q 040468          346 YIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++++..+..|..+++|++|++++|.+.
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCC
Confidence            665444455556666666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.3e-22  Score=202.03  Aligned_cols=168  Identities=20%  Similarity=0.193  Sum_probs=83.7

Q ss_pred             ccccCCCCcCEEeCCCCccCccCc----hhhhcCCCCCEEEccCCcCCC---cccccc-------cCCCCCcEEEccCCc
Q 040468          186 SKKFSLTNLMTLQLDGNNFSGEIP----ESLSKCRRLGGLYLSDNHLSG---EIPRWL-------GNLSFLVDIIMPNNN  251 (543)
Q Consensus       186 ~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~---~~~~~l-------~~~~~L~~L~l~~~~  251 (543)
                      ..+..+++|+.|++++|.+....+    ..+..+++|++|++++|.+..   ..|..+       ..+++|+.|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            344455667777777666654322    224456666666666654331   122222       455666666666666


Q ss_pred             ccc----cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCC---------CCccEEEc
Q 040468          252 LEG----LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS---------PNLVTLDL  318 (543)
Q Consensus       252 ~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~L~~L~l  318 (543)
                      +..    .++..+..+++|+.|++++|.+.......+.                   ..+..+         ++|++|++
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-------------------~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-------------------RALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-------------------HHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH-------------------HHHHHHhhhhhcccCCCCcEEEC
Confidence            554    2344445555666666665554322111110                   011111         55666666


Q ss_pred             ccccccc-ccC---ccCCCCCCCCEEEccCcccccc-----cchhhhCCCCCCEEeCCCCccc
Q 040468          319 SYNCLHG-SIP---NRIDRLPQLSYLLLANNYIEGE-----IPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       319 ~~~~i~~-~~~---~~l~~~~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|++++ ..+   ..+..+++|+.|++++|+++..     .+..+..+++|++|++++|.+.
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            6665542 222   2344555666666666655521     2224555666666666666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=3.5e-21  Score=189.70  Aligned_cols=253  Identities=18%  Similarity=0.184  Sum_probs=167.7

Q ss_pred             EEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCCh---hhhhcCC-CCcEEEccCCcccccCCCCCcCC-----CC
Q 040468           25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPN---WLVENNT-NLETLLLANNSLFGSFRMPIHSH-----QK   95 (543)
Q Consensus        25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~-----~~   95 (543)
                      .++++.+.+++.+|..+...++|++|++++|.+++..+.   ..+..++ +|++|++++|++.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            457888888888887777777799999999998754441   3346677 89999999998876666555553     88


Q ss_pred             CCEEEcCCCccccCCchhhhc---CC-CCCcEEEcCCCcCccCCchhhc----C-CCCCCEEecccccccccCchHhh--
Q 040468           96 LATLDVSNNFFQGHIPVEIGT---YL-PGLMEFNLSRNAFNGSIPSSFA----D-MQMLARLDISYNQLTGEIPERMA--  164 (543)
Q Consensus        96 L~~L~ls~~~i~~~~~~~~~~---~l-~~L~~L~L~~~~i~~~~~~~l~----~-l~~L~~L~L~~~~~~~~~~~~~~--  164 (543)
                      |++|++++|.+++..+..++.   .+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+.+.....+.  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999888555554433   13 7899999999988866554443    3 25889999998888744333321  


Q ss_pred             -hCCC-CCCEEEccCCcCCCcCcccc----cCC-CCcCEEeCCCCccCcc----Cchhhhc-CCCCCEEEccCCcCCCcc
Q 040468          165 -TGCF-SLEILALSNNSLQGHIFSKK----FSL-TNLMTLQLDGNNFSGE----IPESLSK-CRRLGGLYLSDNHLSGEI  232 (543)
Q Consensus       165 -~~~~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~~  232 (543)
                       ...+ +|++|++++|.+++..+..+    ... ++|+.|++++|.+...    ++..+.. .++|++|++++|.+....
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence             2243 78888888888775554333    334 4788888888877653    2333433 347777777777776543


Q ss_pred             c----ccccCCCCCcEEEccCCcccccC-------cccccCCCCCcEEEccCCcCc
Q 040468          233 P----RWLGNLSFLVDIIMPNNNLEGLI-------PIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       233 ~----~~l~~~~~L~~L~l~~~~~~~~~-------~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      +    ..+..+++|+.|++++|.+....       +..+..+++|+.|++++|.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            3    23355667777777777643322       223444555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=7e-21  Score=185.86  Aligned_cols=253  Identities=15%  Similarity=0.118  Sum_probs=147.8

Q ss_pred             eeEEEeeCCCCCCCcchhccCC--CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCccccc-CCCCCcCCCCCCEE
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQ--HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGS-FRMPIHSHQKLATL   99 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L   99 (543)
                      +++++++++.+.   +..+..+  +++++++++++.+.+..+.  +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            566777766655   3444555  6777777777766654444  24567777777777766543 45556667777777


Q ss_pred             EcCCCccccCCchhhhcCCCCCcEEEcCCC-cCcc-CCchhhcCCCCCCEEecccc-cccccCchHhhhCCC-CCCEEEc
Q 040468          100 DVSNNFFQGHIPVEIGTYLPGLMEFNLSRN-AFNG-SIPSSFADMQMLARLDISYN-QLTGEIPERMATGCF-SLEILAL  175 (543)
Q Consensus       100 ~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~-~i~~-~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~-~L~~L~l  175 (543)
                      ++++|.+.+..+..+.. +++|++|++++| .+++ .++..+.++++|++|++++| .+.+......+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            77777666555555555 677777777776 4553 24445666677777777777 655322223334466 7777777


Q ss_pred             cCC--cCC-CcCcccccCCCCcCEEeCCCCc-cCccCchhhhcCCCCCEEEccCCc-CCCcccccccCCCCCcEEEccCC
Q 040468          176 SNN--SLQ-GHIFSKKFSLTNLMTLQLDGNN-FSGEIPESLSKCRRLGGLYLSDNH-LSGEIPRWLGNLSFLVDIIMPNN  250 (543)
Q Consensus       176 ~~n--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~  250 (543)
                      ++|  .++ ...+..+..+++|+.|++++|. ++...+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            776  333 2233344556777777777776 454555566666777777777764 22222224566777777777766


Q ss_pred             cccccCcccccCCCCCcEEEccCCcCccCCCCCC
Q 040468          251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF  284 (543)
Q Consensus       251 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  284 (543)
                       +.......+.  ..+..|++++|.+++..+..+
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence             3322111221  124445566666666555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.1e-20  Score=178.84  Aligned_cols=226  Identities=19%  Similarity=0.181  Sum_probs=123.7

Q ss_pred             CCCCEEeccCCcccccCChhh--hhcCCCCcEEEccCCcccccCCCCC--cCCCCCCEEEcCCCccccCCc----hhhhc
Q 040468           45 HDLKNANLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPI--HSHQKLATLDVSNNFFQGHIP----VEIGT  116 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~ls~~~i~~~~~----~~~~~  116 (543)
                      ..++.+.+.++.++......+  +..+++|++|++++|++.+..|..+  ..+++|++|++++|.+.+..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            456777777776653211111  1234668888888888877777776  778888888888888774333    2223 


Q ss_pred             CCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccccccccc--Cch-HhhhCCCCCCEEEccCCcCCCcCcc---cccC
Q 040468          117 YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGE--IPE-RMATGCFSLEILALSNNSLQGHIFS---KKFS  190 (543)
Q Consensus       117 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~  190 (543)
                      .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.  ++. .....+++|++|++++|.++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            377888888888888766667777788888888888775421  111 1112355566666666655421110   1234


Q ss_pred             CCCcCEEeCCCCccCccCchhhhcC---CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCc
Q 040468          191 LTNLMTLQLDGNNFSGEIPESLSKC---RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR  267 (543)
Q Consensus       191 l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  267 (543)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.+. ..|..+.  ++|+.|++++|.+.+. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            4555555555555554433333333   34444555444444 2232221  3444444444444432 11 23334444


Q ss_pred             EEEccCCcC
Q 040468          268 ILDLSNNTI  276 (543)
Q Consensus       268 ~L~l~~~~~  276 (543)
                      .|++++|.+
T Consensus       298 ~L~L~~N~l  306 (310)
T 4glp_A          298 NLTLDGNPF  306 (310)
T ss_dssp             CEECSSTTT
T ss_pred             EEECcCCCC
Confidence            444444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.4e-21  Score=194.60  Aligned_cols=243  Identities=18%  Similarity=0.190  Sum_probs=154.4

Q ss_pred             cchhccCCCCCCEEeccCCcccccCChhh---hhcCCCCcEEEccCCcc---cccCCCCC-------cCCCCCCEEEcCC
Q 040468           37 FPKFLYHQHDLKNANLSHLNLSGEFPNWL---VENNTNLETLLLANNSL---FGSFRMPI-------HSHQKLATLDVSN  103 (543)
Q Consensus        37 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~~---~~~~~~~~-------~~~~~L~~L~ls~  103 (543)
                      ++..+..+++|++|+|++|.+++..+..+   +..+++|++|++++|.+   .+..|.++       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            55566777888888888887765433332   34677888888887643   23333333       5778888888888


Q ss_pred             CccccC----CchhhhcCCCCCcEEEcCCCcCccCCchh----hcCC---------CCCCEEeccccccccc-Cch--Hh
Q 040468          104 NFFQGH----IPVEIGTYLPGLMEFNLSRNAFNGSIPSS----FADM---------QMLARLDISYNQLTGE-IPE--RM  163 (543)
Q Consensus       104 ~~i~~~----~~~~~~~~l~~L~~L~L~~~~i~~~~~~~----l~~l---------~~L~~L~L~~~~~~~~-~~~--~~  163 (543)
                      |.+.+.    ++..+.. +++|++|++++|.++...+..    +..+         ++|++|++++|.+... ++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            877742    4444544 778888888888776333322    3333         7788888888777622 221  23


Q ss_pred             hhCCCCCCEEEccCCcCCCc-----CcccccCCCCcCEEeCCCCccC----ccCchhhhcCCCCCEEEccCCcCCCc---
Q 040468          164 ATGCFSLEILALSNNSLQGH-----IFSKKFSLTNLMTLQLDGNNFS----GEIPESLSKCRRLGGLYLSDNHLSGE---  231 (543)
Q Consensus       164 ~~~~~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~---  231 (543)
                      +..+++|++|++++|.+...     .+..+..+++|+.|++++|.++    ..++..+..+++|++|++++|.+...   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            33477788888887776621     2225566777778888777764    34555667777777777777776643   


Q ss_pred             -cccccc--CCCCCcEEEccCCcccc----cCcccc-cCCCCCcEEEccCCcCccCC
Q 040468          232 -IPRWLG--NLSFLVDIIMPNNNLEG----LIPIEF-CQLRFLRILDLSNNTIFGTL  280 (543)
Q Consensus       232 -~~~~l~--~~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~  280 (543)
                       ++..+.  .+++|+.|++++|.+..    .++..+ ..+++|+.|++++|.+.+..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             334443  36777777777777765    244444 44677777777777766443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=8.7e-21  Score=186.87  Aligned_cols=263  Identities=18%  Similarity=0.193  Sum_probs=161.7

Q ss_pred             EEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCC----CCCcCCC-CCCEEEcCCCccccCCchhhhcC----CC
Q 040468           49 NANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFR----MPIHSHQ-KLATLDVSNNFFQGHIPVEIGTY----LP  119 (543)
Q Consensus        49 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~ls~~~i~~~~~~~~~~~----l~  119 (543)
                      ++.++.+.+++.+|.. ....++|++|++++|.+.+..+    .++..++ +|++|++++|.+.+..+..+...    .+
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4677888887666654 3556669999999998866655    6677787 89999999998886555555541    27


Q ss_pred             CCcEEEcCCCcCccCCchhh----cCC-CCCCEEecccccccccCchHhhh---C-CCCCCEEEccCCcCCCcCccc---
Q 040468          120 GLMEFNLSRNAFNGSIPSSF----ADM-QMLARLDISYNQLTGEIPERMAT---G-CFSLEILALSNNSLQGHIFSK---  187 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l----~~l-~~L~~L~L~~~~~~~~~~~~~~~---~-~~~L~~L~l~~n~~~~~~~~~---  187 (543)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+.+..+..+..   . .++|++|++++|.+.+.....   
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            88999999988886655543    344 78888888888887444433322   2 357888888888776433322   


Q ss_pred             -ccCCC-CcCEEeCCCCccCccCchhh----hcC-CCCCEEEccCCcCCCc----ccccccC-CCCCcEEEccCCccccc
Q 040468          188 -KFSLT-NLMTLQLDGNNFSGEIPESL----SKC-RRLGGLYLSDNHLSGE----IPRWLGN-LSFLVDIIMPNNNLEGL  255 (543)
Q Consensus       188 -l~~l~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~~~~~  255 (543)
                       +...+ +|++|++++|.++...+..+    ..+ ++|+.|++++|.+...    ++..+.. .++|+.|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence             23444 77777777777765544332    333 4677777777766532    2223333 34666666666666543


Q ss_pred             Cc----ccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccC
Q 040468          256 IP----IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIP  328 (543)
Q Consensus       256 ~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  328 (543)
                      .+    ..+..+++|+.|++++|.+.+.....               + ......+..+++|+.|++++|.+.+..+
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~---------------~-~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ---------------C-KALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH---------------H-HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHH---------------H-HHHHHHhccCCceEEEecCCCcCCCcch
Confidence            32    12234455555555555432111000               0 1123355677778888888887775433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=4.9e-20  Score=170.40  Aligned_cols=196  Identities=15%  Similarity=0.178  Sum_probs=126.9

Q ss_pred             CCcEEEccCCcccccCcccccCCCCCcEEEccCCc-CccCCCCCC-CcccccEEEcCC-CccccccCCCCCCCCCccEEE
Q 040468          241 FLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT-IFGTLPSCF-SPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLD  317 (543)
Q Consensus       241 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  317 (543)
                      +++.|++++|.+.+..+..+..+++|+.|++++|. +....+..+ .+++|+.|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55666666666655555555566666666666664 544443332 355666666665 666655556666777788888


Q ss_pred             ccccccccccCccCCCCCCCC---EEEccCc-ccccccchhhhCCCCCC-EEeCCCCcccccCCCCcccCCCCCCCCCCC
Q 040468          318 LSYNCLHGSIPNRIDRLPQLS---YLLLANN-YIEGEIPVQLCQLKEVQ-LIDLSHNNLSGHIPPCLVNTSLSEGHDEPV  392 (543)
Q Consensus       318 l~~~~i~~~~~~~l~~~~~L~---~L~l~~n-~i~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  392 (543)
                      +++|++++ +|. +..+++|+   .|++++| .+++..+..|.++++|+ .|++++|.+. .+|+....           
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~-----------  177 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN-----------  177 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-----------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-----------
Confidence            88887774 454 67777777   8888888 77755555677788888 8888888775 33322111           


Q ss_pred             CCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEc
Q 040468          393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL  472 (543)
Q Consensus       393 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  472 (543)
                                                                                             .++|++|++
T Consensus       178 -----------------------------------------------------------------------~~~L~~L~L  186 (239)
T 2xwt_C          178 -----------------------------------------------------------------------GTKLDAVYL  186 (239)
T ss_dssp             -----------------------------------------------------------------------TCEEEEEEC
T ss_pred             -----------------------------------------------------------------------CCCCCEEEc
Confidence                                                                                   246788888


Q ss_pred             ccCc-cccccChhhhcc-cccCeeeCcCCccccccChhhhccCCCCeeeCCCCc
Q 040468          473 SCNK-LTGEIPTQIGYL-TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL  524 (543)
Q Consensus       473 s~n~-l~~~~~~~l~~l-~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  524 (543)
                      ++|+ ++...+..|..+ ++|++|++++|++++. |..  .+++|+.|+++++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            8884 774445667777 8888888888888743 333  56677888877764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=3.3e-19  Score=164.80  Aligned_cols=196  Identities=15%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             CCcEEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCEEEccC-CcCCCcCcccccCCCCcCEE
Q 040468          120 GLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSN-NSLQGHIFSKKFSLTNLMTL  197 (543)
Q Consensus       120 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L  197 (543)
                      +|++|++++|.+++..+..+.++++|++|++++|. +. .++...+..+++|++|++++ |.+...              
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i--------------   96 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI--------------   96 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE--------------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc--------------
Confidence            45555555555553333344445555555555553 33 33333333344444444443 333322              


Q ss_pred             eCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCc---EEEccCC-cccccCcccccCCCCCc-EEEcc
Q 040468          198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLV---DIIMPNN-NLEGLIPIEFCQLRFLR-ILDLS  272 (543)
Q Consensus       198 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~  272 (543)
                                .+..+..+++|++|++++|.+.. .|. +..+++|+   .+++++| .+....+..|..+++|+ .|+++
T Consensus        97 ----------~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C           97 ----------DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             ----------CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             ----------CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence                      22233334444444444444332 222 33344443   5555554 44444333444455555 55555


Q ss_pred             CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccc-cccccCccCCCC-CCCCEEEccCcccccc
Q 040468          273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC-LHGSIPNRIDRL-PQLSYLLLANNYIEGE  350 (543)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~-~~L~~L~l~~n~i~~~  350 (543)
                      +|.+......                       .+.. ++|++|++++|+ ++...+..+..+ ++|+.|++++|+++ .
T Consensus       165 ~n~l~~i~~~-----------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~  219 (239)
T 2xwt_C          165 NNGFTSVQGY-----------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A  219 (239)
T ss_dssp             SCCCCEECTT-----------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-C
T ss_pred             CCCCcccCHh-----------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-c
Confidence            5444433222                       2322 445555555552 443333444455 55555555555554 2


Q ss_pred             cchhhhCCCCCCEEeCCCC
Q 040468          351 IPVQLCQLKEVQLIDLSHN  369 (543)
Q Consensus       351 ~~~~l~~l~~L~~L~l~~n  369 (543)
                      +|..  .+++|+.|+++++
T Consensus       220 l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          220 LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCT--TCTTCSEEECTTC
T ss_pred             CChh--HhccCceeeccCc
Confidence            2221  3445555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=6.7e-19  Score=169.06  Aligned_cols=192  Identities=22%  Similarity=0.282  Sum_probs=95.6

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~  122 (543)
                      .+++|++|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++ .+.. +++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCC
T ss_pred             HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCC
Confidence            4555666666665554 3332  3555666666666665543333  555566666666666555 332 2222 55566


Q ss_pred             EEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCC
Q 040468          123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGN  202 (543)
Q Consensus       123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  202 (543)
                      +|++++|.+++. + .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            666666555532 2 2555555555555555555 2322  3335555555555555543222  444555555555555


Q ss_pred             ccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccc
Q 040468          203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE  253 (543)
Q Consensus       203 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  253 (543)
                      .+.+..+  +..+++|+.|++++|.+....  .+..+++|+.|++++|.+.
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            5442211  444455555555555444222  1444445555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=1.3e-18  Score=167.01  Aligned_cols=207  Identities=23%  Similarity=0.314  Sum_probs=139.4

Q ss_pred             eccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc
Q 040468           51 NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA  130 (543)
Q Consensus        51 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~  130 (543)
                      .+....+++.+.   ...+++|++|+++++.+... + ++..+++|++|++++|.+. .++. +. .+++|++|++++|.
T Consensus        25 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNP   96 (308)
T ss_dssp             HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCC
T ss_pred             HhCCCCcCceec---HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCc
Confidence            444554443333   24567888888888877543 3 5777888888888888877 4554 43 37888888888888


Q ss_pred             CccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCch
Q 040468          131 FNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPE  210 (543)
Q Consensus       131 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  210 (543)
                      +++ + ..+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+... +.
T Consensus        97 l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~  168 (308)
T 1h6u_A           97 LKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP  168 (308)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred             CCC-c-hhhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh
Confidence            774 2 36777888888888888877 4443  4557778888888877765432  66677777777777777643 22


Q ss_pred             hhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          211 SLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       211 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                       +..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..  .+..+++|+.|++++|.+..
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence             6667777777777777764332  666777777777777766543  25666677777777766653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.1e-18  Score=162.44  Aligned_cols=177  Identities=24%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      .++++++++.++ .+|..+.  +++++|++++|.+.+..+. .+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            455566655555 3333322  4556666666655533222 23555666666666665555555555556666666666


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG  182 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  182 (543)
                      +|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus        92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc
Confidence            66555 444444333555556666555555433344455555555555555555 4444334445555555555555554


Q ss_pred             cCcccccCCCCcCEEeCCCCccC
Q 040468          183 HIFSKKFSLTNLMTLQLDGNNFS  205 (543)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~  205 (543)
                      ..+..+..+++|+.|++.+|.+.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHHhCCCCCCEEEeeCCcee
Confidence            44444444555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.6e-19  Score=158.65  Aligned_cols=109  Identities=25%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             CCCcEEEccCCcCccCCCCCC-CcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEc
Q 040468          264 RFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLL  342 (543)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l  342 (543)
                      +++++|++++|.+.+..+..+ .+++|+.|++++|.+++.....+..+++|++|++++|+++...+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            345555555555544333322 2444555555555544444334444455555555555544333333444455555555


Q ss_pred             cCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          343 ANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       343 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|++++..+..+..+++|++|++++|.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            555444333333444445555555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.8e-18  Score=168.01  Aligned_cols=203  Identities=18%  Similarity=0.144  Sum_probs=120.3

Q ss_pred             CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE-EEc
Q 040468           48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME-FNL  126 (543)
Q Consensus        48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~-L~L  126 (543)
                      ++++-++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|.+...++...+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45566666665 666654   3567777777777766666667777777777777777654566666655666654 445


Q ss_pred             CCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccC-CcCCCcCcccccCCC-CcCEEeCCCCcc
Q 040468          127 SRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSN-NSLQGHIFSKKFSLT-NLMTLQLDGNNF  204 (543)
Q Consensus       127 ~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~~~~  204 (543)
                      .+|+++...+..|..+++|++|++++|.+. .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            556776555667777777777777777776 44443333344556666654 344433333444432 466666666666


Q ss_pred             CccCchhhhcCCCCCEEEccC-CcCCCcccccccCCCCCcEEEccCCcccccC
Q 040468          205 SGEIPESLSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLI  256 (543)
Q Consensus       205 ~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  256 (543)
                      +...+..+ ...+|+.+++.+ |.+....+..|..+++|+.|++++|.++...
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            53322222 334566666653 3444333344556666666666666665443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=8.3e-18  Score=164.67  Aligned_cols=243  Identities=20%  Similarity=0.175  Sum_probs=155.7

Q ss_pred             CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCE-EEc
Q 040468           97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEI-LAL  175 (543)
Q Consensus        97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~-L~l  175 (543)
                      ++++.+++.++ ++|..+.   +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.++...+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888887 7887663   578888888888885555678888888888888888765677666666666654 444


Q ss_pred             cCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccccc
Q 040468          176 SNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL  255 (543)
Q Consensus       176 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  255 (543)
                      ..|++....+..+..+++|++|++++|.+....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666555555556666666666666555333333333333444443321                       233333


Q ss_pred             CcccccCC-CCCcEEEccCCcCccCCCCCCCcccccEEEcCC-CccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468          256 IPIEFCQL-RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSK-NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR  333 (543)
Q Consensus       256 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~  333 (543)
                      .+..+..+ ..++.|++++|.++......+...+++++++.+ |.++......|..+++|++|++++|+++. +|.  ..
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YG  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SS
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hh
Confidence            33333333 246677777777776666666667777887764 56666666677888888888888888883 443  23


Q ss_pred             CCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCc
Q 040468          334 LPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN  370 (543)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  370 (543)
                      +.+|+.|.+.++.-...+|. +..+++|+.+++.++.
T Consensus       222 ~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            45566777666644445663 6778888888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=5.1e-18  Score=174.81  Aligned_cols=197  Identities=23%  Similarity=0.269  Sum_probs=152.8

Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcC
Q 040468          216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS  295 (543)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  295 (543)
                      .+++.|++++|.+.. +|..+  .++|+.|++++|.+... |   ..+++|+.|++++|.+.+. +. + ..+|+.|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l-~~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-L-PASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-C-CTTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-h-hcCCCEEECC
Confidence            389999999999885 55544  37899999999998844 4   4568899999999998874 44 3 2389999999


Q ss_pred             CCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468          296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI  375 (543)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  375 (543)
                      +|.+++.+.    .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|. |.  ++|++|++++|.+. .+
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            999987433    57899999999999984 554   57889999999999985 666 55  89999999999886 45


Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCC
Q 040468          376 PPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNM  455 (543)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (543)
                      |. +.. .+                                                                       
T Consensus       196 p~-~~~-~L-----------------------------------------------------------------------  202 (571)
T 3cvr_A          196 PA-VPV-RN-----------------------------------------------------------------------  202 (571)
T ss_dssp             CC-CC---------------------------------------------------------------------------
T ss_pred             hh-HHH-hh-----------------------------------------------------------------------
Confidence            54 221 00                                                                       


Q ss_pred             cccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCC
Q 040468          456 SYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQ  514 (543)
Q Consensus       456 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~  514 (543)
                           ....+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..|..+++
T Consensus       203 -----~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          203 -----HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             -----hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                 000345699999999999 78988888999999999999999888888877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=1e-17  Score=151.14  Aligned_cols=131  Identities=24%  Similarity=0.296  Sum_probs=61.8

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L  124 (543)
                      ++|++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence            45555555555554 333333345555555555555554444444455555555555555554 3333333334555555


Q ss_pred             EcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCC
Q 040468          125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN  178 (543)
Q Consensus       125 ~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n  178 (543)
                      ++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCC
Confidence            55555554333333444445555555544444 333333333444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.2e-17  Score=164.13  Aligned_cols=127  Identities=26%  Similarity=0.237  Sum_probs=74.1

Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCC--CcccccEEEcCCCccccccCCCCCCCCCccEEEccc
Q 040468          243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF--SPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY  320 (543)
Q Consensus       243 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (543)
                      +.++++++.+... |..+.  +.++.|++++|.+.+..+..+  .+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4566666665543 33332  345666666666665554443  356666666666666655555566666666666666


Q ss_pred             cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          321 NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       321 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      |+++...+..|..+++|+.|++++|+++...+..|..+++|+.|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            6666444445566666666666666666555555666666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.9e-17  Score=150.47  Aligned_cols=104  Identities=23%  Similarity=0.258  Sum_probs=56.0

Q ss_pred             cEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468          267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY  346 (543)
Q Consensus       267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~  346 (543)
                      +.++.+++.+...+...  ++.++.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            34555555555333222  2455666666665555555455555556666666665554445555555555555555555


Q ss_pred             cccccchhhhCCCCCCEEeCCCCccc
Q 040468          347 IEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       347 i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++...+..|..+++|++|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCC
Confidence            55333334455555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=9e-18  Score=159.70  Aligned_cols=127  Identities=25%  Similarity=0.314  Sum_probs=68.5

Q ss_pred             cCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEE
Q 040468          237 GNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTL  316 (543)
Q Consensus       237 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  316 (543)
                      ..+++|+.+++++|.+...  ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..  .+..+++|++|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--hhccCCCCCEE
Confidence            4456666777766666544  235556666666666666654333 333555555555555554422  24455555555


Q ss_pred             EccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          317 DLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       317 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+.
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            5555555532  2345555555555555555532  33455555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.1e-17  Score=150.18  Aligned_cols=155  Identities=25%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             ccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468          289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH  368 (543)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  368 (543)
                      .+.++.+++.++..+.. +.  ++|++|++++|.+++..+..+..+++|+.|++++|++....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC-CC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            44555555555433321 21  5666666666666655566666666677777777666544444556666777777777


Q ss_pred             CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468          369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI  448 (543)
Q Consensus       369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (543)
                      |.+.+..+..+..                                                                   
T Consensus        98 N~l~~l~~~~~~~-------------------------------------------------------------------  110 (229)
T 3e6j_A           98 NQLTVLPSAVFDR-------------------------------------------------------------------  110 (229)
T ss_dssp             SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred             CcCCccChhHhCc-------------------------------------------------------------------
Confidence            6665322211111                                                                   


Q ss_pred             eeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCccc
Q 040468          449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  528 (543)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  528 (543)
                                     +++|++|++++|+++ .+|..+..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.
T Consensus       111 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          111 ---------------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ---------------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ---------------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence                           456667777777776 6666667777777777777777655555566677777777777776644


Q ss_pred             C
Q 040468          529 I  529 (543)
Q Consensus       529 ~  529 (543)
                      .
T Consensus       175 c  175 (229)
T 3e6j_A          175 C  175 (229)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=150.76  Aligned_cols=110  Identities=16%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             cEEEccCCcCccCCCCCCCcccccEEEcCCCcccccc-CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468          267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL-ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN  345 (543)
Q Consensus       267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n  345 (543)
                      +.++++++.++..+...  ++.++.|++++|.+++.. ...|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            46777777666543322  345667777777776653 234566677777777777777555556777777777777777


Q ss_pred             ccccccchhhhCCCCCCEEeCCCCcccccCCCC
Q 040468          346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPC  378 (543)
Q Consensus       346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  378 (543)
                      ++++..+..|..+++|++|++++|.+.+..|..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  124 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS  124 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence            776555556667777777777777765443433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.6e-17  Score=148.51  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=92.5

Q ss_pred             cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEe
Q 040468          286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID  365 (543)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  365 (543)
                      +++|+.|++++|.++...  .+..+++|++|++++|.++.  +..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345555555555554322  34555666666666665542  23566666677777777666655556666667777777


Q ss_pred             CCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCc
Q 040468          366 LSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE  445 (543)
Q Consensus       366 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (543)
                      +++|.+.+..+..+..                                                                
T Consensus       119 Ls~n~i~~~~~~~l~~----------------------------------------------------------------  134 (197)
T 4ezg_A          119 ISHSAHDDSILTKINT----------------------------------------------------------------  134 (197)
T ss_dssp             CCSSBCBGGGHHHHTT----------------------------------------------------------------
T ss_pred             ecCCccCcHhHHHHhh----------------------------------------------------------------
Confidence            7776665433322221                                                                


Q ss_pred             cceeeeccCCcccccccccCceeEEEcccCc-cccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCc
Q 040468          446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNK-LTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL  524 (543)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  524 (543)
                                        +++|++|++++|+ ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus       135 ------------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          135 ------------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ------------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             ------------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence                              4567777777776 55 444 57777888888888888774 33 67778888888888887


Q ss_pred             Cc
Q 040468          525 LH  526 (543)
Q Consensus       525 i~  526 (543)
                      |.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.1e-16  Score=164.94  Aligned_cols=134  Identities=25%  Similarity=0.310  Sum_probs=61.7

Q ss_pred             CcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      +++.|+++++.+++ +|..+  .++|++|++++|.+. .+|   ..+++|+.|++++|.+.+ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555443 33322  244555555555554 223   234455555555555544 222 322  45555555


Q ss_pred             CCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccc
Q 040468          273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIE  348 (543)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~  348 (543)
                      +|.+.+...   .+++|+.|++++|.+++...    .+++|++|++++|.+++ +|. +.  ++|+.|++++|+++
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            555544222   34455555555555543221    23455555555555552 333 33  45555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=5.9e-17  Score=168.80  Aligned_cols=145  Identities=24%  Similarity=0.290  Sum_probs=96.7

Q ss_pred             CCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCC
Q 040468          218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKN  297 (543)
Q Consensus       218 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  297 (543)
                      +..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence            3334444444443222  45677788888888877654 2 46777888888888887775443 444777777777777


Q ss_pred             ccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccc
Q 040468          298 KIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  373 (543)
                      .+.+..  .+..+++|++|++++|.+.+ + ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+
T Consensus        98 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           98 KIKDLS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCCCCT--TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CCCCCh--hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            776532  46677777777777777764 2 3466777777777777777643  456777777777777777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=2e-16  Score=143.77  Aligned_cols=151  Identities=18%  Similarity=0.177  Sum_probs=94.7

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      +.+++++++++ .+|..+.  +++++|++++|.+. .++...+..+++|++|++++|++.+..+.+|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45666666665 3443332  56777777777766 33433346667777777777777666666677777777777777


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL  180 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  180 (543)
                      |.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence            7766 666665555667777777777766555666666666666666666666 44444444455566666665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=4.8e-16  Score=147.75  Aligned_cols=171  Identities=25%  Similarity=0.300  Sum_probs=91.5

Q ss_pred             hcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC
Q 040468           67 ENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA  146 (543)
Q Consensus        67 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~  146 (543)
                      ..+++|++|+++++.+...  ..+..+++|++|++++|.+. .++. +.. +++|++|++++|.+++  ...+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~--~~~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LAN-LKNLGWLFLDENKVKD--LSSLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-ccc-CCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence            4456677777777666433  23566667777777776666 3333 333 6666777776666653  23366666666


Q ss_pred             EEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCC
Q 040468          147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDN  226 (543)
Q Consensus       147 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  226 (543)
                      +|++++|.+. .++ . +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|
T Consensus       116 ~L~L~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          116 SLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             EEECTTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            6666666665 332 1 23355666666666655533  344455555555555555543222  444555555555555


Q ss_pred             cCCCcccccccCCCCCcEEEccCCccc
Q 040468          227 HLSGEIPRWLGNLSFLVDIIMPNNNLE  253 (543)
Q Consensus       227 ~~~~~~~~~l~~~~~L~~L~l~~~~~~  253 (543)
                      .+.. .+ .+..+++|+.|++++|.+.
T Consensus       189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          189 HISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             cCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            4442 11 2444444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=4.2e-16  Score=141.63  Aligned_cols=152  Identities=15%  Similarity=0.139  Sum_probs=86.4

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      ++++++++.++. +|..+  .+.+++|++++|.+++..+...+..+++|++|++++|++.+..+.+|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            456666666653 34332  234566666666666444444456666666666666666655555666666666666666


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcC
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL  180 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  180 (543)
                      |.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus        91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCC
Confidence            6665 444444444666666666666666555555666666666666666555 33223333355555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.5e-16  Score=156.29  Aligned_cols=175  Identities=26%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhh-cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVE-NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      +.++++++++. .+|..+  .+.+++|+|++|.+++ ++...+. .+++|++|+|++|++.+..+.+|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46666666666 344333  2456777777777763 3333334 66777777777777766666667777777777777


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhh---hCCCCCCEEEccCCc
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMA---TGCFSLEILALSNNS  179 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~  179 (543)
                      +|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|.+. .++...+   ..+++|+.|++++|.
T Consensus        97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence            77766 555544444677777777777776555666677777777777777766 5555554   335566666666666


Q ss_pred             CCCcCcccccCCCC--cCEEeCCCCcc
Q 040468          180 LQGHIFSKKFSLTN--LMTLQLDGNNF  204 (543)
Q Consensus       180 ~~~~~~~~l~~l~~--L~~L~l~~~~~  204 (543)
                      +.......+..++.  ++.|++.+|.+
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCc
Confidence            55444444444443  24455555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=4.6e-16  Score=138.93  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             CCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468           43 HQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~  122 (543)
                      .+++|++|+++++.+. .++.  +..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred             hcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence            4445555555555554 3332  3445555555555554321  123445555555555555554333333333 45555


Q ss_pred             EEEcCCCcCccCCchhhcCCCCCCEEeccccc-ccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCC
Q 040468          123 EFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG  201 (543)
Q Consensus       123 ~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  201 (543)
                      +|++++|.+++..+..+..+++|++|++++|. +. .++  .+..+++|++|++++|.+.+..  .+..+++|+.|++.+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence            55555555554444455555555555555554 33 333  1333555555555555554322  444555566666655


Q ss_pred             CccC
Q 040468          202 NNFS  205 (543)
Q Consensus       202 ~~~~  205 (543)
                      |++.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            5543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=1.3e-15  Score=158.81  Aligned_cols=171  Identities=26%  Similarity=0.313  Sum_probs=78.8

Q ss_pred             cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468           68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR  147 (543)
Q Consensus        68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~  147 (543)
                      .+++|+.|+++++.+... + .+..+++|++|+|++|.+. .++. +.. +++|++|+|++|.+.+ + ..+..+++|+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            344444444444444222 1 2444445555555554444 2222 222 4455555555554442 1 23444455555


Q ss_pred             EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      |++++|.+. .++ . +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       114 L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          114 LSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            555555544 222 1 22345555555555554432  334445555555555555543322  4455555555555555


Q ss_pred             CCCcccccccCCCCCcEEEccCCcccc
Q 040468          228 LSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      +...  ..+..+++|+.|++++|.+..
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcC
Confidence            5422  234555555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1e-16  Score=155.49  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             CCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCcc-EEEccccccccccCccCCCCCCCCEE
Q 040468          263 LRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLV-TLDLSYNCLHGSIPNRIDRLPQLSYL  340 (543)
Q Consensus       263 l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~L~~L  340 (543)
                      +++|+.+++++|.+.......|. +++|+++++.++ ++......|.++++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            45555666655555544444443 556666666555 5555566677777777 777776 5654556677777777777


Q ss_pred             EccCcccccccchhhhCCCCCCEEe
Q 040468          341 LLANNYIEGEIPVQLCQLKEVQLID  365 (543)
Q Consensus       341 ~l~~n~i~~~~~~~l~~l~~L~~L~  365 (543)
                      ++.+|++....+.+|.++++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7777777656666777777777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=1.7e-15  Score=138.48  Aligned_cols=131  Identities=23%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L  124 (543)
                      ++|++|++++|.+++..+.. +..+++|++|++++|++....+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence            44555555555544322222 244445555555555443333334444445555555544444 3333333334444444


Q ss_pred             EcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCc
Q 040468          125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNS  179 (543)
Q Consensus       125 ~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  179 (543)
                      ++++|.++ .+|..+..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCC
Confidence            44444444 33444444444444444444444 3333333333444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=4.9e-17  Score=152.07  Aligned_cols=123  Identities=22%  Similarity=0.282  Sum_probs=81.2

Q ss_pred             CCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcc
Q 040468          240 SFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLS  319 (543)
Q Consensus       240 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  319 (543)
                      .++..++++++.+.+..  .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+++..+  +..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            34555666666666442  455677788888888777643 344446777777777777776544  6677777777777


Q ss_pred             ccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          320 YNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       320 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +|++++ ++. +.. ++|+.|++++|++++ ++ .+..+++|+.|++++|.+.
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC
Confidence            777774 332 222 677777777777764 33 4667777777777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=6.4e-15  Score=146.58  Aligned_cols=335  Identities=13%  Similarity=0.112  Sum_probs=198.3

Q ss_pred             ccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch
Q 040468           82 LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE  161 (543)
Q Consensus        82 ~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  161 (543)
                      ++.+...+|.+|.+|+.+.+..+ ++ .+....+..|++|+.+++..+ ++.....+|.++..|+.+.+..+ +. .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            44555667777777887777643 55 566666666777777777654 33233445666666665544432 12 2233


Q ss_pred             HhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCC
Q 040468          162 RMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSF  241 (543)
Q Consensus       162 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  241 (543)
                      ..|..+...+                         ...... .......+|.++.+|+.+.+.++.. ......|..+.+
T Consensus       134 ~aF~~~~~~~-------------------------~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~  186 (394)
T 4fs7_A          134 EAFKGCDFKE-------------------------ITIPEG-VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGK  186 (394)
T ss_dssp             TTTTTCCCSE-------------------------EECCTT-CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTT
T ss_pred             eeeecccccc-------------------------cccCcc-ccccchhhhcccCCCcEEecCCccc-eeccccccCCCC
Confidence            3333222111                         111111 1112234455566666666654322 133445566666


Q ss_pred             CcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccc
Q 040468          242 LVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYN  321 (543)
Q Consensus       242 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  321 (543)
                      |+.+.+..+ +......++..+..|+.+.+..+... .....+....|+.+.+... ++......+..+..++.+.+..+
T Consensus       187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            666666544 33344455666666766666554332 2333444567777777543 33445566777888888888776


Q ss_pred             ccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 040468          322 CLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGR  401 (543)
Q Consensus       322 ~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  401 (543)
                      ... .....+..+..++.+......+.   ...|..+.+|+.+.+..+ +......+|..                    
T Consensus       264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~--------------------  318 (394)
T 4fs7_A          264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFES--------------------  318 (394)
T ss_dssp             TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTT--------------------
T ss_pred             cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcC--------------------
Confidence            544 55667778888888777665432   345777888888877654 22111222221                    


Q ss_pred             CCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCcccccc
Q 040468          402 ASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEI  481 (543)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  481 (543)
                                                                                    +.+|++++|..+ ++...
T Consensus       319 --------------------------------------------------------------c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          319 --------------------------------------------------------------CTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             --------------------------------------------------------------CTTCCEECCCTT-CCEEC
T ss_pred             --------------------------------------------------------------CCCCCEEEeCCc-ccEEh
Confidence                                                                          567888888644 66344


Q ss_pred             ChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCCcC
Q 040468          482 PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       482 ~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l  542 (543)
                      ...|.+|++|+.++|..+ ++.....+|.+|++|+.+++.++ +. .+...|..+++|+.+
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            577888999999999776 66677778999999999999765 33 334668888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=6.1e-16  Score=150.05  Aligned_cols=285  Identities=13%  Similarity=0.059  Sum_probs=143.4

Q ss_pred             CCCCcEEEccCCcccccCCCCCcC-CCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcC------
Q 040468           69 NTNLETLLLANNSLFGSFRMPIHS-HQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD------  141 (543)
Q Consensus        69 l~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~------  141 (543)
                      +.+++.|.+++. +.......+.. +++|++|+|++|.+. .....-. .++.++.+.+..+.+   ....|.+      
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~-~~~~~~~~~~~~~~I---~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAG-TYPNGKFYIYMANFV---PAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSS-SSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccc-ccccccccccccccc---CHHHhcccccccc
Confidence            456777777654 21111112223 677777777777765 1111100 122233444444432   2234555      


Q ss_pred             --CCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCC
Q 040468          142 --MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLG  219 (543)
Q Consensus       142 --l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  219 (543)
                        +++|+++++.+ .+. .++...|.+|++|+.+++..|.+.......+..+.++..+........              
T Consensus        98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------  161 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------------  161 (329)
T ss_dssp             EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred             cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence              67777777766 555 666666666777777777776665555555555555555544332110              


Q ss_pred             EEEccCCcCCCcccccccCCCCCc-EEEccCCcc-cccCcccccCCCCCcEEEccCCcCccCCCCCC-CcccccEEEcCC
Q 040468          220 GLYLSDNHLSGEIPRWLGNLSFLV-DIIMPNNNL-EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCF-SPAYIEQVHLSK  296 (543)
Q Consensus       220 ~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~  296 (543)
                            ..........|..+..|+ .+.+..... .......-....++..+.+.+.-......... .+++|+.+++.+
T Consensus       162 ------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          162 ------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             ------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred             ------hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence                  000001112222333333 222221110 00000000122334444444331110000000 146677777777


Q ss_pred             CccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCC-EEEccCcccccccchhhhCCCCCCEEeCCCCcccccC
Q 040468          297 NKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLS-YLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHI  375 (543)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  375 (543)
                      |.++......|..+++|+.+++.+| ++.....+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+....
T Consensus       236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~  313 (329)
T 3sb4_A          236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG  313 (329)
T ss_dssp             BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred             CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence            7776666667777777777777776 5545556677777777 777766 555455666777777777777777666555


Q ss_pred             CCCcccCC
Q 040468          376 PPCLVNTS  383 (543)
Q Consensus       376 ~~~~~~~~  383 (543)
                      +.+|..++
T Consensus       314 ~~aF~~~~  321 (329)
T 3sb4_A          314 DELFGNGV  321 (329)
T ss_dssp             TTTTCTTC
T ss_pred             hhhhcCCc
Confidence            55565543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.6e-18  Score=177.96  Aligned_cols=63  Identities=21%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCcccccc-ChhhhccCCCCeeeCCCCcCccc
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGK  528 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~  528 (543)
                      +++|+.|+|++|+++ .+| .+..+++|++|+|++|.+++.. |..|..+++|+.|++++|++++.
T Consensus       485 l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          485 LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            345555555555555 344 5555666666666666665444 55566666666666666666544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=2.1e-15  Score=133.85  Aligned_cols=159  Identities=20%  Similarity=0.228  Sum_probs=111.9

Q ss_pred             cEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc-cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468          290 EQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN-RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH  368 (543)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  368 (543)
                      +.++++++.++..+. .+.  +++++|++++|.++...+. .+..+++|+.|++++|++++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            678888888865443 232  3888888888888855443 478888888888888888877788888888888888888


Q ss_pred             CcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccce
Q 040468          369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETI  448 (543)
Q Consensus       369 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (543)
                      |.+.+..+..+..                                                                   
T Consensus        88 N~l~~~~~~~~~~-------------------------------------------------------------------  100 (192)
T 1w8a_A           88 NKIKEISNKMFLG-------------------------------------------------------------------  100 (192)
T ss_dssp             CCCCEECSSSSTT-------------------------------------------------------------------
T ss_pred             CcCCccCHHHhcC-------------------------------------------------------------------
Confidence            8887544433322                                                                   


Q ss_pred             eeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccCh-hhhccCCCCeeeCCCCcCcc
Q 040468          449 QFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG  527 (543)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~~  527 (543)
                                     +++|++|+|++|++++..|..+..+++|++|++++|++.+..+. ++..  .++...+.++...+
T Consensus       101 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C  163 (192)
T 1w8a_A          101 ---------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARC  163 (192)
T ss_dssp             ---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBB
T ss_pred             ---------------CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCC
Confidence                           56788888888888877788888888888888888888765442 2211  13333445555555


Q ss_pred             cCCccccc
Q 040468          528 KIPSQLTV  535 (543)
Q Consensus       528 ~~~~~~~~  535 (543)
                      ..|..+..
T Consensus       164 ~~P~~l~~  171 (192)
T 1w8a_A          164 GAPSKVRD  171 (192)
T ss_dssp             CSSTTTTT
T ss_pred             CCChHHcC
Confidence            55555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=9e-16  Score=133.27  Aligned_cols=135  Identities=23%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             CCccEEEccccccc-cccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCC
Q 040468          311 PNLVTLDLSYNCLH-GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHD  389 (543)
Q Consensus       311 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  389 (543)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..        
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK--------   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence            56777777777766 45566666677777777777777643  55667777777777777765433322211        


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeE
Q 040468          390 EPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFG  469 (543)
Q Consensus       390 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  469 (543)
                                                                                                +++|++
T Consensus        94 --------------------------------------------------------------------------l~~L~~   99 (168)
T 2ell_A           94 --------------------------------------------------------------------------LPNLTH   99 (168)
T ss_dssp             --------------------------------------------------------------------------CTTCCE
T ss_pred             --------------------------------------------------------------------------CCCCCE
Confidence                                                                                      457777


Q ss_pred             EEcccCccccccC--hhhhcccccCeeeCcCCccccccC---hhhhccCCCCeeeCCCCcCcccCCc
Q 040468          470 IDLSCNKLTGEIP--TQIGYLTKIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPS  531 (543)
Q Consensus       470 L~ls~n~l~~~~~--~~l~~l~~L~~L~ls~n~i~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~  531 (543)
                      |++++|.++ .+|  ..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+. .+|+
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            777777777 333  667788888888888888885544   47788888888888888876 4444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=5.7e-14  Score=139.07  Aligned_cols=218  Identities=11%  Similarity=0.129  Sum_probs=118.5

Q ss_pred             CCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEcc
Q 040468          145 LARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS  224 (543)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  224 (543)
                      |+.+.+.. .+. .+....|..|++|+.+++..|.+.......+. ..+|+.+.+..+ +......+|.++++|+.+.+.
T Consensus       159 L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          159 VQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             ceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            44444443 222 33333444444444444444444433323332 344444444422 333334445555555555554


Q ss_pred             CCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc-----cCCCCCC-CcccccEEEcCCCc
Q 040468          225 DNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF-----GTLPSCF-SPAYIEQVHLSKNK  298 (543)
Q Consensus       225 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~-~~~~L~~L~l~~~~  298 (543)
                      .+ +......+|.. .+|+.+.+.+ .+......+|..+++|+.+.+.++.+.     ......| .+++|+.+.+.+ .
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred             CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence            42 22223333444 4555555532 334344455566666666666555433     2223333 366777777763 4


Q ss_pred             cccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC-CCCEEeCCCCccc
Q 040468          299 IEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK-EVQLIDLSHNNLS  372 (543)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~  372 (543)
                      ++......|.+|++|+.+.+..+ ++.....+|.++ +|+.+.+.+|.........|.+++ +++.|.+..+...
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            66566677888888888888554 554566778888 888888888877655556677764 6788888777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=6.2e-14  Score=139.41  Aligned_cols=312  Identities=13%  Similarity=0.079  Sum_probs=204.8

Q ss_pred             hhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCC
Q 040468           39 KFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYL  118 (543)
Q Consensus        39 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l  118 (543)
                      .++..|.+|+.+.+..+ ++ .+.+..|.+|.+|+.+++.++ +......+|.++..|+.+.+..+ +. .+....+..+
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence            45778888888888753 44 566666788888998888755 55556677888888888777644 33 3444455544


Q ss_pred             CCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEe
Q 040468          119 PGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ  198 (543)
Q Consensus       119 ~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  198 (543)
                      .. ....+... +......+|.++++|+.+.+..+. . .++...|..+.+|+.+.+..+ +.......+..+..|+.+.
T Consensus       140 ~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          140 DF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             cc-cccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            33 33333222 222334567788888888886543 3 566777777888888888765 3444455666777787777


Q ss_pred             CCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCcc
Q 040468          199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFG  278 (543)
Q Consensus       199 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  278 (543)
                      +..+... .. ........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+......+..
T Consensus       215 ~~~~~~~-i~-~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          215 FPNSLYY-LG-DFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             CCTTCCE-EC-TTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT
T ss_pred             cCCCceE-ee-hhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc
Confidence            6654322 21 223345677777776432 223445567788888888876533 3445567777778877776554321


Q ss_pred             CCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCC
Q 040468          279 TLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL  358 (543)
Q Consensus       279 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l  358 (543)
                        ..+..+.+|+.+.+..+ ++.....+|..|.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|
T Consensus       291 --~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          291 --KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             --TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             --ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence              22334778888888654 55566677888888888888654 55455677888888888888766 555666778888


Q ss_pred             CCCCEEeCCCC
Q 040468          359 KEVQLIDLSHN  369 (543)
Q Consensus       359 ~~L~~L~l~~n  369 (543)
                      .+|+.+++..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            88888888654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=5.4e-14  Score=139.23  Aligned_cols=191  Identities=9%  Similarity=0.051  Sum_probs=88.8

Q ss_pred             CCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEE
Q 040468          167 CFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDII  246 (543)
Q Consensus       167 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  246 (543)
                      +..++.+.+..+ ++......|..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|..|++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            345555555442 232333444442 5666665544 443444445442 466665553 33333344555555555555


Q ss_pred             ccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEcccccccc
Q 040468          247 MPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG  325 (543)
Q Consensus       247 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  325 (543)
                      +..+.+......+|. +.+|+.+.+..+ +.......|. +++|+.+++..+ ++.....+|.. .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            555555544444443 345555555433 3333333332 445555555442 33333344444 445555552 22333


Q ss_pred             ccCccCCCCCCCCEEEccCcccc-----cccchhhhCCCCCCEEeCC
Q 040468          326 SIPNRIDRLPQLSYLLLANNYIE-----GEIPVQLCQLKEVQLIDLS  367 (543)
Q Consensus       326 ~~~~~l~~~~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~l~  367 (543)
                      ....+|.+|++|+.+.+.++.+.     ...+.+|.+|++|+.+++.
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            33444555555555555544332     2333445555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=3.1e-15  Score=139.80  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=107.3

Q ss_pred             cCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccC
Q 040468          194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSN  273 (543)
Q Consensus       194 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  273 (543)
                      +..+++.++.+... + .+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus        21 l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            33444444444422 1 34455556666666665552 22 35556666666666666655433  56666666666666


Q ss_pred             CcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccch
Q 040468          274 NTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPV  353 (543)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~  353 (543)
                      |.+.+... ... ++|+.|++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  .
T Consensus        95 N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           95 NRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             SCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             CccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence            66664322 222 6777777777777654  2467788888888888888743 3 577888888888888888754  5


Q ss_pred             hhhCCCCCCEEeCCCCcccc
Q 040468          354 QLCQLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       354 ~l~~l~~L~~L~l~~n~~~~  373 (543)
                      .+..+++|+.|++++|++.+
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEEC
T ss_pred             HhccCCCCCEEeCCCCcccC
Confidence            67788888888888888864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.4e-15  Score=127.75  Aligned_cols=59  Identities=22%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             cCceeEEEcccCccccc-cChhhhcccccCeeeCcCCccccccC---hhhhccCCCCeeeCCC
Q 040468          464 LTSMFGIDLSCNKLTGE-IPTQIGYLTKIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSY  522 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~i~~~~~---~~~~~l~~L~~L~l~~  522 (543)
                      +++|++|++++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            34555555555555521 12556666666666666666664444   3566666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=128.43  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=44.1

Q ss_pred             cEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCC
Q 040468          290 EQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN  369 (543)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  369 (543)
                      +.++++++.++..+.. +.  ++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-CC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            3455556555533322 21  45666666666665 44555566666666666666665444455556666666666666


Q ss_pred             ccc
Q 040468          370 NLS  372 (543)
Q Consensus       370 ~~~  372 (543)
                      .+.
T Consensus        89 ~l~   91 (193)
T 2wfh_A           89 RLR   91 (193)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=9.9e-15  Score=126.64  Aligned_cols=133  Identities=22%  Similarity=0.243  Sum_probs=86.5

Q ss_pred             CCCCCEEeccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCc
Q 040468           44 QHDLKNANLSHLNLS-GEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLM  122 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~  122 (543)
                      .++|++|++++|.++ +.+|.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence            366777777777665 445544 35667777777777766544  55667777777777777776435544444 67777


Q ss_pred             EEEcCCCcCccCC-chhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEccCCcCC
Q 040468          123 EFNLSRNAFNGSI-PSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALSNNSLQ  181 (543)
Q Consensus       123 ~L~L~~~~i~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~  181 (543)
                      +|++++|.+++.. +..+..+++|++|++++|.+. ..+.   ..+..+++|++|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777777776422 256677777777777777776 4444   45556777777777777655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=3.5e-14  Score=125.94  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=105.5

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      +.+++++++++ .+|..+.  +++++|++++|.+.+..+..++..+++|++|++++|++++..+.+|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888888886 5665443  38899999999887544444568888999999999988888888888899999999999


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCch
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPE  161 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  161 (543)
                      |.++ .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+....+.
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9888 44444444488899999999988877788888888899999988888755543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2e-15  Score=161.26  Aligned_cols=73  Identities=30%  Similarity=0.431  Sum_probs=41.6

Q ss_pred             CCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCc
Q 040468          304 ESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL  379 (543)
Q Consensus       304 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  379 (543)
                      +..+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~  289 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL  289 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence            344555666666666666666 44545556666666666666666 55666666666666666666665 444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=4.1e-14  Score=123.88  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             ccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468          289 IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH  368 (543)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  368 (543)
                      .+.++++++.++..+...   .++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            455666666665433221   25666667776666644444556666666666666666644444556666666666666


Q ss_pred             Cccc
Q 040468          369 NNLS  372 (543)
Q Consensus       369 n~~~  372 (543)
                      |.+.
T Consensus        86 N~l~   89 (177)
T 2o6r_A           86 NKLQ   89 (177)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            6664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.8e-14  Score=122.23  Aligned_cols=127  Identities=22%  Similarity=0.242  Sum_probs=69.7

Q ss_pred             CCCCEEeccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcE
Q 040468           45 HDLKNANLSHLNLS-GEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLME  123 (543)
Q Consensus        45 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~  123 (543)
                      ++|++|++++|.++ +.+|.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCE
Confidence            45555555555554 334432 24555555555555555433  44555666666666666665334444333 566666


Q ss_pred             EEcCCCcCccC-CchhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEcc
Q 040468          124 FNLSRNAFNGS-IPSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALS  176 (543)
Q Consensus       124 L~L~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~  176 (543)
                      |++++|.+++. .+..+..+++|++|++++|.+. ..+.   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            66666666532 2255666666666666666665 3333   344456666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=5.7e-16  Score=160.42  Aligned_cols=183  Identities=19%  Similarity=0.189  Sum_probs=115.4

Q ss_pred             cCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCc-------------CccCCchhhcCCCCCCEEe-ccccccc
Q 040468           91 HSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNA-------------FNGSIPSSFADMQMLARLD-ISYNQLT  156 (543)
Q Consensus        91 ~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~-------------i~~~~~~~l~~l~~L~~L~-L~~~~~~  156 (543)
                      ..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.             ..+..|..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45677888888888777 77777777 7778888876653             3345566777777777777 5555433


Q ss_pred             ccCchHhhh-------CCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468          157 GEIPERMAT-------GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       157 ~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  229 (543)
                       .++.....       ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             22211000       012466777777766643 22 666667777777777666 55666666677777777776666


Q ss_pred             CcccccccCCCCCcEEEccCCcccccC-cccccCCCCCcEEEccCCcCccCCC
Q 040468          230 GEIPRWLGNLSFLVDIIMPNNNLEGLI-PIEFCQLRFLRILDLSNNTIFGTLP  281 (543)
Q Consensus       230 ~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~  281 (543)
                      . +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+.++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            3 34 5666666666776666666554 5666666666666666666655433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=3.8e-14  Score=123.92  Aligned_cols=61  Identities=21%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             cCceeEEEcccCccccccCh--hhhcccccCeeeCcCCccccccChh----hhccCCCCeeeCCCCcCc
Q 040468          464 LTSMFGIDLSCNKLTGEIPT--QIGYLTKIHALNLSHNNLTGTIPTT----FSNLKQIESLDLSYNLLH  526 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~--~l~~l~~L~~L~ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~  526 (543)
                      +++|++|++++|+++ .+|.  .+..+++|+.|++++|+++ ..|..    +..+++|+.||+++|++.
T Consensus        87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            456677777777765 4554  5667777777777777776 34443    677777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=2.2e-14  Score=153.28  Aligned_cols=142  Identities=25%  Similarity=0.311  Sum_probs=83.8

Q ss_pred             CCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhh
Q 040468           86 FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT  165 (543)
Q Consensus        86 ~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  165 (543)
                      .+..+..+++|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+. 
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-  290 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-  290 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-
Confidence            3455666666777777776666 66666665 666777777777666 56666666777777777777666 5665543 


Q ss_pred             CCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCC-CCCEEEccCCcCCCccc
Q 040468          166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCR-RLGGLYLSDNHLSGEIP  233 (543)
Q Consensus       166 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~  233 (543)
                      .+++|++|+|++|.+. .++..+..+++|+.|++++|.+.+..|..+.... ....+++++|.+....|
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            3666777777777665 3344566677777777777776655554443321 11234555665554433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=8.1e-13  Score=115.55  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=70.4

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      +.++++++++. .+|..  -.++|++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTT--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCC--CCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45566666555 23322  2256666666666655 34433345566666666666666554445555666666666666


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccc
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG  157 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~  157 (543)
                      |.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6655 4444433335566666666666554333344555566666666665553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.3e-15  Score=135.99  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             cccEEEcCCCccccccCC------CCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCC
Q 040468          288 YIEQVHLSKNKIEGRLES------VIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV  361 (543)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  361 (543)
                      .++.++++.+.+.+..+.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            344444444444443332      45566677777777777763 44 6666677777777777776 455555566677


Q ss_pred             CEEeCCCCccc
Q 040468          362 QLIDLSHNNLS  372 (543)
Q Consensus       362 ~~L~l~~n~~~  372 (543)
                      ++|++++|.+.
T Consensus        96 ~~L~L~~N~l~  106 (198)
T 1ds9_A           96 EELWISYNQIA  106 (198)
T ss_dssp             SEEEEEEEECC
T ss_pred             CEEECcCCcCC
Confidence            77777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=3.9e-13  Score=117.41  Aligned_cols=132  Identities=19%  Similarity=0.203  Sum_probs=72.1

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL  121 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L  121 (543)
                      ..+++|++|++++|.++ .++. +....++|++|++++|.+.+.  ..+..+++|++|++++|.++ .+|..++..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            44556666666666555 3332 222233666666666665443  34556666666666666665 4444443335666


Q ss_pred             cEEEcCCCcCccCCch--hhcCCCCCCEEecccccccccCchH---hhhCCCCCCEEEccCCcC
Q 040468          122 MEFNLSRNAFNGSIPS--SFADMQMLARLDISYNQLTGEIPER---MATGCFSLEILALSNNSL  180 (543)
Q Consensus       122 ~~L~L~~~~i~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~  180 (543)
                      ++|++++|.++ .++.  .+..+++|++|++++|.+. .++..   ++..+++|+.|+++.|..
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            66666666664 3333  5556666666666666665 44443   333455666666555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=1e-12  Score=116.44  Aligned_cols=126  Identities=27%  Similarity=0.328  Sum_probs=65.2

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEeccc
Q 040468           73 ETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISY  152 (543)
Q Consensus        73 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~  152 (543)
                      ++++++++++. .+|..+  .++|++|++++|.++ .+|..+.. +++|++|++++|.+++..+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            44555555553 233322  245566666666555 55543333 55566666666655544444555555566666655


Q ss_pred             ccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCcc
Q 040468          153 NQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNF  204 (543)
Q Consensus       153 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~  204 (543)
                      |.+. .++...+..+++|++|++++|.+.......+..+++|+.|++.+|.+
T Consensus        88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5555 44444444455555555555555544433444455555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=3.5e-11  Score=119.52  Aligned_cols=136  Identities=9%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             ccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCccc
Q 040468          302 RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVN  381 (543)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  381 (543)
                      .....|..+..|+.+.+.++... ....+|.+++.|+.+.+.. .++.....+|.+|.+|+.+++..+ +......+|..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            34456667777777777655433 4556677777777777753 344455566777777777777543 22111112211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccc
Q 040468          382 TSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQG  461 (543)
Q Consensus       382 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (543)
                                                                                                      
T Consensus       333 --------------------------------------------------------------------------------  332 (394)
T 4gt6_A          333 --------------------------------------------------------------------------------  332 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCc
Q 040468          462 RILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  526 (543)
Q Consensus       462 ~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~  526 (543)
                        |.+|+++.|..+ ++......|.+|++|+.+++.++...   ..++..+.+|+.+.+..+.+.
T Consensus       333 --C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          333 --CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             --CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             --CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence              456777777543 55334456778888888888776543   145667777887777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=6e-11  Score=117.81  Aligned_cols=299  Identities=12%  Similarity=0.139  Sum_probs=180.7

Q ss_pred             cCChhhhhcCC-CCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCc---cccCCchhhhcCCCCCcEEEcCCCcCccCC
Q 040468           60 EFPNWLVENNT-NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF---FQGHIPVEIGTYLPGLMEFNLSRNAFNGSI  135 (543)
Q Consensus        60 ~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~---i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~  135 (543)
                      .+.+..|.+++ .|+.+.+... ++.....+|.+|.+|+.+.+..+.   ++ .+....+..+.+|+.+.+..+ ++...
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            34444455553 4677777554 555556667777777777765542   44 455555555666766666543 23233


Q ss_pred             chhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcC
Q 040468          136 PSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC  215 (543)
Q Consensus       136 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  215 (543)
                      ...|.++.+|+.+.+..+ +. .+....+..+.+|+.+.+..+ +.......+. ...|+.+.+..+.. .....++..+
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c  204 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSEC  204 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTC
T ss_pred             hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhc
Confidence            455666677777777543 22 455556666777777776554 2222223332 34566666654432 2444556666


Q ss_pred             CCCCEEEccCCcCCCccc-------------ccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCC
Q 040468          216 RRLGGLYLSDNHLSGEIP-------------RWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS  282 (543)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  282 (543)
                      ..+...............             ..+.....+..+.+.. .+......+|..+..|+.+.+...... ....
T Consensus       205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~  282 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTG  282 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTT
T ss_pred             cccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCc
Confidence            666666554433221000             0111223344444433 233344567788888998888765433 3333


Q ss_pred             -CCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCC
Q 040468          283 -CFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEV  361 (543)
Q Consensus       283 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  361 (543)
                       +..++.|+.+.+. +.++......|..|.+|+.+++..+ ++.....+|.+|.+|+.+.+-.+ ++.....+|.+|.+|
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence             3347888988886 3566667778889999999999765 55456678899999999999654 655667789999999


Q ss_pred             CEEeCCCCcc
Q 040468          362 QLIDLSHNNL  371 (543)
Q Consensus       362 ~~L~l~~n~~  371 (543)
                      +.+++.++..
T Consensus       360 ~~i~~~~~~~  369 (394)
T 4gt6_A          360 NNIEYSGSRS  369 (394)
T ss_dssp             CEEEESSCHH
T ss_pred             CEEEECCcee
Confidence            9999988754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=3.4e-15  Score=133.32  Aligned_cols=146  Identities=23%  Similarity=0.302  Sum_probs=93.0

Q ss_pred             CCccEEEccccccccccCc------cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCC
Q 040468          311 PNLVTLDLSYNCLHGSIPN------RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSL  384 (543)
Q Consensus       311 ~~L~~L~l~~~~i~~~~~~------~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  384 (543)
                      +.++.++++.+.+.+..|.      .+..+++|+.|++++|++++ +| .+..+++|++|++++|.+. .+|..+..   
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~---   91 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV---   91 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH---
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc---
Confidence            3444445555554444333      67777778888888877774 55 6777778888888877765 23321111   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCccccccccc
Q 040468          385 SEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRIL  464 (543)
Q Consensus       385 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (543)
                                                                                                     +
T Consensus        92 -------------------------------------------------------------------------------~   92 (198)
T 1ds9_A           92 -------------------------------------------------------------------------------A   92 (198)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           4


Q ss_pred             CceeEEEcccCccccccChhhhcccccCeeeCcCCccccccC-hhhhccCCCCeeeCCCCcCcccCCcc----------c
Q 040468          465 TSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPSQ----------L  533 (543)
Q Consensus       465 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~----------~  533 (543)
                      ++|++|++++|+++ .+| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            57777777777777 344 57777777777777777774332 45677777777777777776555442          5


Q ss_pred             cccCcCCcCC
Q 040468          534 TVLTTLAVFR  543 (543)
Q Consensus       534 ~~l~~L~~l~  543 (543)
                      ..+++|+.|+
T Consensus       171 ~~l~~L~~Ld  180 (198)
T 1ds9_A          171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCSEEC
T ss_pred             HhCCCcEEEC
Confidence            6666666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=4.1e-12  Score=110.01  Aligned_cols=108  Identities=23%  Similarity=0.224  Sum_probs=81.3

Q ss_pred             CccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468          312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP  391 (543)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  391 (543)
                      ..+.++++++.++ .+|..+.  ++|+.|++++|++++..+..|.++++|++|++++|.+.+..+..+..          
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~----------   76 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK----------   76 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC----------
Confidence            3568889998888 5665553  77889999999988777778888889999999988886332222222          


Q ss_pred             CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468          392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID  471 (543)
Q Consensus       392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  471 (543)
                                                                                              +++|++|+
T Consensus        77 ------------------------------------------------------------------------l~~L~~L~   84 (170)
T 3g39_A           77 ------------------------------------------------------------------------LTQLTQLS   84 (170)
T ss_dssp             ------------------------------------------------------------------------CTTCCEEE
T ss_pred             ------------------------------------------------------------------------CCCCCEEE
Confidence                                                                                    56888888


Q ss_pred             cccCccccccChhhhcccccCeeeCcCCccccc
Q 040468          472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGT  504 (543)
Q Consensus       472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~  504 (543)
                      |++|+++...+..|..+++|++|+|++|+++..
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            888888844445688888888888888888744

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.24  E-value=4.4e-11  Score=103.49  Aligned_cols=106  Identities=24%  Similarity=0.192  Sum_probs=82.5

Q ss_pred             CcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCc
Q 040468          266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN  345 (543)
Q Consensus       266 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n  345 (543)
                      .+.++++++.+...+...  ++.++.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456777777776544333  367888888888888777777888888888888888888666667788888999999988


Q ss_pred             ccccccchhhhCCCCCCEEeCCCCcccc
Q 040468          346 YIEGEIPVQLCQLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       346 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~  373 (543)
                      ++++..+..|..+++|++|++++|++..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            8886656668888889999999888763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=4.5e-11  Score=103.78  Aligned_cols=104  Identities=19%  Similarity=0.237  Sum_probs=70.8

Q ss_pred             CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC
Q 040468           48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS  127 (543)
Q Consensus        48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~  127 (543)
                      +.++++++.+. .+|..+   .++|++|++++|++.+..+..|..+++|++|++++|.++ .+|..++..+++|++|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            56677777664 566544   366777777777776666667777777777777777776 5666655456777777777


Q ss_pred             CCcCccCCchhhcCCCCCCEEeccccccc
Q 040468          128 RNAFNGSIPSSFADMQMLARLDISYNQLT  156 (543)
Q Consensus       128 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~  156 (543)
                      +|.+++..+..+..+++|++|++++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            77777444445677777777777777666

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=3.6e-13  Score=131.97  Aligned_cols=168  Identities=16%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             CCCCEEeccCCcccccCChhhh----hcCCCCcEEEccCCcccccCCCCC-cCCCCCCEEEcCCCccccCCchhhh----
Q 040468           45 HDLKNANLSHLNLSGEFPNWLV----ENNTNLETLLLANNSLFGSFRMPI-HSHQKLATLDVSNNFFQGHIPVEIG----  115 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~ls~~~i~~~~~~~~~----  115 (543)
                      ++|++|++++|.++......+.    ..+.+|++|+|++|.+++.....+ ..+++|++|++++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5666777776666532222211    122566777777766643322222 2345667777777766533222222    


Q ss_pred             cCCCCCcEEEcCCCcCccC----CchhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEEccCCcCCCcCc---
Q 040468          116 TYLPGLMEFNLSRNAFNGS----IPSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILALSNNSLQGHIF---  185 (543)
Q Consensus       116 ~~l~~L~~L~L~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~---  185 (543)
                      ...++|++|++++|.++..    ++..+..+++|++|++++|.+.+....   ..+...++|++|++++|.++....   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1245677777777766532    233445566777777777766532211   112235567777777777664322   


Q ss_pred             -ccccCCCCcCEEeCCCCccCccCchhh
Q 040468          186 -SKKFSLTNLMTLQLDGNNFSGEIPESL  212 (543)
Q Consensus       186 -~~l~~l~~L~~L~l~~~~~~~~~~~~l  212 (543)
                       ..+...++|++|++++|.++......+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence             223345677777777777665443333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.22  E-value=2.7e-09  Score=105.37  Aligned_cols=338  Identities=8%  Similarity=0.037  Sum_probs=172.5

Q ss_pred             CcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCC
Q 040468           90 IHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFS  169 (543)
Q Consensus        90 ~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  169 (543)
                      +....+|+.+.+... ++ .++...+..|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +. .+....|..+ +
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence            455677888887643 55 666777777888888888654 443444566665 5666666543 33 4555555533 6


Q ss_pred             CCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccC
Q 040468          170 LEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN  249 (543)
Q Consensus       170 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  249 (543)
                      |+.+.+..+- .......+.. .+++.+.+..+ ++......+..+..++.+.+............. ..          
T Consensus       115 L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~----------  180 (379)
T 4h09_A          115 LDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LY----------  180 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EE----------
T ss_pred             cccccCCCcc-cccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccce-ec----------
Confidence            7777765542 2122222222 24444444332 222333445555555555544332210000000 00          


Q ss_pred             CcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCc
Q 040468          250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPN  329 (543)
Q Consensus       250 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  329 (543)
                       .........+.....+..+.+......-.......+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....
T Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~  257 (379)
T 4h09_A          181 -NKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF  257 (379)
T ss_dssp             -ETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred             -ccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence             00001112233344455555444322212222233556666666543 33344556666777777777654 4434455


Q ss_pred             cCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 040468          330 RIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSY  409 (543)
Q Consensus       330 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  409 (543)
                      ++..+.+|+.+.+..+ +......+|.+|.+|+.+.+.++.+......+|..                            
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~----------------------------  308 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD----------------------------  308 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT----------------------------
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC----------------------------
Confidence            6677777777777543 43344556777777777777666554322223322                            


Q ss_pred             cccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhccc
Q 040468          410 TKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLT  489 (543)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~  489 (543)
                                                                            +.+|++++|..+ ++......|.+|+
T Consensus       309 ------------------------------------------------------c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          309 ------------------------------------------------------CVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             ------------------------------------------------------CTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ------------------------------------------------------CCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence                                                                  456777777543 5534456688888


Q ss_pred             ccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCC
Q 040468          490 KIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA  540 (543)
Q Consensus       490 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  540 (543)
                      +|+.+.|..+ ++.....+|.+++.++ +...   +...-...++.+++||
T Consensus       334 ~L~~i~ip~~-v~~I~~~aF~~c~~~~-~~~~---~~~~~~~~f~~~~~Lk  379 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESGAFEGSSITK-YPTW---LSKGNNGDYGIFTKIK  379 (379)
T ss_dssp             TCCCCCCCTT-CCEECTTTTTTSSCCC-CCTT---CEECTTSCEEC-----
T ss_pred             CCCEEEECCc-cCEEchhHhhCCCCCc-Cccc---cccCceeehhhhhhcC
Confidence            8888888654 5555566777765433 2222   2222234466666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.20  E-value=3.6e-09  Score=104.42  Aligned_cols=315  Identities=11%  Similarity=0.068  Sum_probs=157.3

Q ss_pred             ccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCC
Q 040468           41 LYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPG  120 (543)
Q Consensus        41 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~  120 (543)
                      .....+|+.+.+... ++ .+++..|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ ++ .+....+.. .+
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence            344556677666542 33 555555677777777777543 445555666665 4666655432 33 444455553 36


Q ss_pred             CcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCC
Q 040468          121 LMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD  200 (543)
Q Consensus       121 L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  200 (543)
                      |+.+.+..+... .....|.+ ..++...+..+ +. .+....+..+..++.+.+.............. .         
T Consensus       115 L~~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~---------  180 (379)
T 4h09_A          115 LDDFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y---------  180 (379)
T ss_dssp             CSEEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E---------
T ss_pred             cccccCCCcccc-cccccccc-ceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-c---------
Confidence            777766554221 22233333 24554444332 22 33333444455555555443321100000000 0         


Q ss_pred             CCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCC
Q 040468          201 GNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTL  280 (543)
Q Consensus       201 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  280 (543)
                       +. .......+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++...
T Consensus       181 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~  255 (379)
T 4h09_A          181 -NK-NKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG  255 (379)
T ss_dssp             -ET-TSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred             -cc-ccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence             00 0001111222333444443332111 22333445555666555433 23333445556666666666544 33233


Q ss_pred             CCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCC
Q 040468          281 PSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLK  359 (543)
Q Consensus       281 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~  359 (543)
                      ...+. +..|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            33332 566666666542 44445556777777777777777666555667777777777777644 4445556677777


Q ss_pred             CCCEEeCCCCcccccCCCCcccCCC
Q 040468          360 EVQLIDLSHNNLSGHIPPCLVNTSL  384 (543)
Q Consensus       360 ~L~~L~l~~n~~~~~~~~~~~~~~~  384 (543)
                      +|+.+.+..+ +......+|.++..
T Consensus       334 ~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CCCEEEECCc-cCEEchhHhhCCCC
Confidence            7777777654 43334445555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=1.1e-10  Score=101.41  Aligned_cols=104  Identities=22%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             cEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcc
Q 040468          267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY  346 (543)
Q Consensus       267 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~  346 (543)
                      +.++++++.+...+...  ++.|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            45666666665433322  3667777777777777767777788888888888888885555556788888888888888


Q ss_pred             cccccchhhhCCCCCCEEeCCCCccc
Q 040468          347 IEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       347 i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      +++..+..|..+++|++|++++|++.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            87555555778888888888888875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.6e-12  Score=127.33  Aligned_cols=162  Identities=17%  Similarity=0.081  Sum_probs=91.2

Q ss_pred             CCCCcEEEccCCcccccCCCCCc-----CCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhh----
Q 040468           69 NTNLETLLLANNSLFGSFRMPIH-----SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSF----  139 (543)
Q Consensus        69 l~~L~~L~L~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l----  139 (543)
                      ++.|++|++++|.++......+.     ..++|++|++++|.+.+.....+...+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46778888888877543322222     236788888888877644444444445677788888877764333333    


Q ss_pred             -cCCCCCCEEecccccccccCchHh---hhCCCCCCEEEccCCcCCCcC----cccccCCCCcCEEeCCCCccCccC---
Q 040468          140 -ADMQMLARLDISYNQLTGEIPERM---ATGCFSLEILALSNNSLQGHI----FSKKFSLTNLMTLQLDGNNFSGEI---  208 (543)
Q Consensus       140 -~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~---  208 (543)
                       ...+.|++|++++|.++......+   +...++|++|++++|.+.+..    ...+...++|+.|++++|.++...   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             234667777777777653211111   133566777777777665322    233344556666666666655321   


Q ss_pred             -chhhhcCCCCCEEEccCCcCCC
Q 040468          209 -PESLSKCRRLGGLYLSDNHLSG  230 (543)
Q Consensus       209 -~~~l~~~~~L~~L~l~~~~~~~  230 (543)
                       +..+...++|++|++++|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence             2223344556666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=7.1e-10  Score=108.08  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             EEEcCCC-ccccccCCCCCCCCCccEEEccc-cccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCC
Q 040468          291 QVHLSKN-KIEGRLESVIPDSPNLVTLDLSY-NCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH  368 (543)
Q Consensus       291 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  368 (543)
                      .++.+++ .++..+ . +..+++|++|+|++ |.++...+..|..+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566766 676543 3 77778888888885 888866667788888888888888888877777788888888888888


Q ss_pred             Cccc
Q 040468          369 NNLS  372 (543)
Q Consensus       369 n~~~  372 (543)
                      |.+.
T Consensus        90 N~l~   93 (347)
T 2ifg_A           90 NALE   93 (347)
T ss_dssp             SCCS
T ss_pred             Cccc
Confidence            8876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=7.2e-10  Score=108.04  Aligned_cols=133  Identities=17%  Similarity=0.119  Sum_probs=96.2

Q ss_pred             cEEEcccc-ccccccCccCCCCCCCCEEEccC-cccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCC
Q 040468          314 VTLDLSYN-CLHGSIPNRIDRLPQLSYLLLAN-NYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEP  391 (543)
Q Consensus       314 ~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  391 (543)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..          
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----------   78 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF----------   78 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS----------
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC----------
Confidence            35688887 888 5777 88899999999996 8998777778899999999999999988665555543          


Q ss_pred             CCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEE
Q 040468          392 VAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGID  471 (543)
Q Consensus       392 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  471 (543)
                                                                                              +++|++|+
T Consensus        79 ------------------------------------------------------------------------l~~L~~L~   86 (347)
T 2ifg_A           79 ------------------------------------------------------------------------TPRLSRLN   86 (347)
T ss_dssp             ------------------------------------------------------------------------CSCCCEEE
T ss_pred             ------------------------------------------------------------------------CcCCCEEe
Confidence                                                                                    56899999


Q ss_pred             cccCccccccChhhhcccccCeeeCcCCccccccC-hhhhccCCCCeeeCCCCcCcccCCc
Q 040468          472 LSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPS  531 (543)
Q Consensus       472 ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~  531 (543)
                      |++|+++...+..+..++ |+.|+|.+|.+...-. .+|..........+..+.+.+..|.
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            999999943344455555 9999999999874322 3444444444445555556555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.4e-09  Score=103.85  Aligned_cols=15  Identities=7%  Similarity=-0.153  Sum_probs=9.5

Q ss_pred             ccCCCCCcEEEccCC
Q 040468          260 FCQLRFLRILDLSNN  274 (543)
Q Consensus       260 l~~l~~L~~L~l~~~  274 (543)
                      ...+++|+.|.+...
T Consensus       135 ~~~l~~L~~L~l~~~  149 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDI  149 (362)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             hhhcchhhheeecCc
Confidence            345567888877553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=8.5e-09  Score=100.02  Aligned_cols=158  Identities=14%  Similarity=0.108  Sum_probs=89.2

Q ss_pred             ceeEEEeeCCCCCC-Cc-------chhccCCCCCCEEeccCCccc--------ccCChhhhhcCCCCcEEEccCCccccc
Q 040468           22 QLTSISLSGYIDGG-TF-------PKFLYHQHDLKNANLSHLNLS--------GEFPNWLVENNTNLETLLLANNSLFGS   85 (543)
Q Consensus        22 ~L~~L~L~~~~~~~-~~-------~~~l~~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~L~~L~L~~~~~~~~   85 (543)
                      +++.|.+....+.+ ..       .+.+.++++|+.|.+.+....        ......++..+++|+.|.++++.-. .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            68888888766552 21       333556789999988654321        0112345577889999999887311 2


Q ss_pred             CCCCCcCCCCCCEEEcCCCccccCCchhhhc-CCCCCcEEEcCCC--cCccC-----Cchhh--cCCCCCCEEecccccc
Q 040468           86 FRMPIHSHQKLATLDVSNNFFQGHIPVEIGT-YLPGLMEFNLSRN--AFNGS-----IPSSF--ADMQMLARLDISYNQL  155 (543)
Q Consensus        86 ~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~-~l~~L~~L~L~~~--~i~~~-----~~~~l--~~l~~L~~L~L~~~~~  155 (543)
                      .+. +. +++|++|++..+.+.......+.. .+++|++|+|+.+  ...+.     +...+  ..+++|++|++.+|.+
T Consensus       187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            222 33 788888888887766433334431 3788888887531  11111     11112  2356777777776666


Q ss_pred             cccCchHhhh--CCCCCCEEEccCCcCCC
Q 040468          156 TGEIPERMAT--GCFSLEILALSNNSLQG  182 (543)
Q Consensus       156 ~~~~~~~~~~--~~~~L~~L~l~~n~~~~  182 (543)
                      .+..+..++.  .+++|++|+++.|.+.+
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            5333333332  24455555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=3.3e-08  Score=86.46  Aligned_cols=62  Identities=8%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             CceeEEEcccCccccc----cChhhhcccccCeeeC--cCCcccccc----ChhhhccCCCCeeeCCCCcCc
Q 040468          465 TSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNL--SHNNLTGTI----PTTFSNLKQIESLDLSYNLLH  526 (543)
Q Consensus       465 ~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l--s~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~  526 (543)
                      ++|++|+|++|.+.+.    +...+...++|++|+|  ++|.|.+..    .+.+...++|+.|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3455555555555533    2334455555666666  556655432    233444456666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=1.5e-07  Score=86.36  Aligned_cols=78  Identities=22%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             cCceeEEEcccCcccc--ccChhhhcccccCeeeCcCCccccccChhhhccC--CCCeeeCCCCcCcccCCc-------c
Q 040468          464 LTSMFGIDLSCNKLTG--EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKIPS-------Q  532 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~-------~  532 (543)
                      +++|++|+|++|++++  .+|..+..+++|+.|+|++|.|.+.  ..+..++  +|++|++++|++.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            7899999999999996  3456788999999999999999954  3455566  999999999999876652       4


Q ss_pred             ccccCcCCcCC
Q 040468          533 LTVLTTLAVFR  543 (543)
Q Consensus       533 ~~~l~~L~~l~  543 (543)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67888888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1.4e-07  Score=82.35  Aligned_cols=120  Identities=15%  Similarity=0.259  Sum_probs=82.8

Q ss_pred             cchhccCCCCCCEEeccCC-cccccCChhh---hhcCCCCcEEEccCCccccc----CCCCCcCCCCCCEEEcCCCcccc
Q 040468           37 FPKFLYHQHDLKNANLSHL-NLSGEFPNWL---VENNTNLETLLLANNSLFGS----FRMPIHSHQKLATLDVSNNFFQG  108 (543)
Q Consensus        37 ~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~ls~~~i~~  108 (543)
                      +...+...++|++|+|++| .+.+.....+   +...++|++|+|++|.+.+.    +..++...+.|++|+|++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3455667888999999888 7764322222   34567889999999887543    23445566789999999998875


Q ss_pred             CCchhhh---cCCCCCcEEEc--CCCcCccC----CchhhcCCCCCCEEeccccccc
Q 040468          109 HIPVEIG---TYLPGLMEFNL--SRNAFNGS----IPSSFADMQMLARLDISYNQLT  156 (543)
Q Consensus       109 ~~~~~~~---~~l~~L~~L~L--~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~  156 (543)
                      .....++   ...+.|++|++  ++|.++..    +.+.+...+.|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4332232   22568999999  77888743    3345566688999999988775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=2.1e-07  Score=79.15  Aligned_cols=86  Identities=9%  Similarity=0.060  Sum_probs=56.7

Q ss_pred             CCCceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCc-ccccCChhhhhc----CCCCcEEEccCCc-ccccCCCCCcC
Q 040468           19 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLN-LSGEFPNWLVEN----NTNLETLLLANNS-LFGSFRMPIHS   92 (543)
Q Consensus        19 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~L~~~~-~~~~~~~~~~~   92 (543)
                      +.++|++||+++|.++..-...+..|++|++|+|++|. +++.....+ ..    +++|++|+|++|. +++..-..+..
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            34578888888888776645556778888888888874 665444443 33    2467777777774 55544444566


Q ss_pred             CCCCCEEEcCCCc
Q 040468           93 HQKLATLDVSNNF  105 (543)
Q Consensus        93 ~~~L~~L~ls~~~  105 (543)
                      +++|++|++++|.
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            7777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=2.2e-07  Score=79.05  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             cccccEEEcCCCccccccCCCCCCCCCccEEEccccc-cccccCccCCCC----CCCCEEEccCc-ccccccchhhhCCC
Q 040468          286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC-LHGSIPNRIDRL----PQLSYLLLANN-YIEGEIPVQLCQLK  359 (543)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~----~~L~~L~l~~n-~i~~~~~~~l~~l~  359 (543)
                      ...|+.|++++|.+++.....+..+++|++|++++|. +++.....+..+    ++|+.|++++| +|++..-..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3467888888888777666667788999999999984 776655566654    47999999998 48876667778899


Q ss_pred             CCCEEeCCCCcc
Q 040468          360 EVQLIDLSHNNL  371 (543)
Q Consensus       360 ~L~~L~l~~n~~  371 (543)
                      +|++|++++|+-
T Consensus       140 ~L~~L~L~~c~~  151 (176)
T 3e4g_A          140 NLKYLFLSDLPG  151 (176)
T ss_dssp             TCCEEEEESCTT
T ss_pred             CCCEEECCCCCC
Confidence            999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.85  E-value=1.8e-05  Score=72.67  Aligned_cols=81  Identities=21%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cCCCCCCEEEcCCCcccc--CCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCC--CCCEEecccccccccCc------
Q 040468           91 HSHQKLATLDVSNNFFQG--HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQ--MLARLDISYNQLTGEIP------  160 (543)
Q Consensus        91 ~~~~~L~~L~ls~~~i~~--~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~--~L~~L~L~~~~~~~~~~------  160 (543)
                      .++++|+.|+|++|.+.+  .++..+.. +++|+.|+|++|.+.+.  ..+..++  +|++|++++|.+.+.++      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            456778888888887773  22233333 77888888888887743  2333344  78888888888775444      


Q ss_pred             hHhhhCCCCCCEEE
Q 040468          161 ERMATGCFSLEILA  174 (543)
Q Consensus       161 ~~~~~~~~~L~~L~  174 (543)
                      ..+...+|+|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence            23455688888876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00027  Score=61.17  Aligned_cols=113  Identities=22%  Similarity=0.322  Sum_probs=53.9

Q ss_pred             cCCCCCCEEeccCC-cccccCChhh---hhcCCCCcEEEccCCcccccCC----CCCcCCCCCCEEEcCCCccccCCchh
Q 040468           42 YHQHDLKNANLSHL-NLSGEFPNWL---VENNTNLETLLLANNSLFGSFR----MPIHSHQKLATLDVSNNFFQGHIPVE  113 (543)
Q Consensus        42 ~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~ls~~~i~~~~~~~  113 (543)
                      ..-+.|++|+|+++ .+.+.-...+   +..-..|+.|+|++|.+.+...    ++++.-+.|++|+|++|.|.+.....
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34466666776664 5543211111   1233456666666666643322    22334456666666666665433333


Q ss_pred             hhcC---CCCCcEEEcCCC---cCcc----CCchhhcCCCCCCEEeccccc
Q 040468          114 IGTY---LPGLMEFNLSRN---AFNG----SIPSSFADMQMLARLDISYNQ  154 (543)
Q Consensus       114 ~~~~---l~~L~~L~L~~~---~i~~----~~~~~l~~l~~L~~L~L~~~~  154 (543)
                      +.+.   -+.|++|+|+++   .+..    .+.+.+..-+.|++|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3322   234666666543   2221    122334444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0011  Score=53.46  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=26.5

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccc
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLT  502 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~  502 (543)
                      .++|++|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            557777777777777333445677777777777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.00051  Score=59.43  Aligned_cols=18  Identities=6%  Similarity=0.228  Sum_probs=8.2

Q ss_pred             CcCCCCCCEEEcCCCccc
Q 040468           90 IHSHQKLATLDVSNNFFQ  107 (543)
Q Consensus        90 ~~~~~~L~~L~ls~~~i~  107 (543)
                      ++.-..|++|+|++|.+.
T Consensus        66 L~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCCcCEEEccCCCCC
Confidence            333444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.55  E-value=0.022  Score=45.77  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=18.0

Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcC
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAF  131 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i  131 (543)
                      +|++|+|++|.++ .++..++..+++|++|+|++|++
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            3455555555554 44444444455555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	543
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.3 bits (212), Expect = 3e-19
 Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 5/262 (1%)

Query: 121 LMEFNLSRNAFNG--SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNN 178
           +   +LS         IPSS A++  L  L I                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 179 SLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGN 238
           ++ G I      +  L+TL    N  SG +P S+S    L G+    N +SG IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 239 LSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNK 298
            S L   +  + N              L  +DLS N + G     F      Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 299 IEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358
                   +  S NL  LDL  N ++G++P  + +L  L  L ++ N + GEIP Q   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 359 KEVQLIDLSHNNL--SGHIPPC 378
           +   +   ++N       +P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 4e-15
 Identities = 60/244 (24%), Positives = 85/244 (34%), Gaps = 2/244 (0%)

Query: 145 LARLDISYNQLTGEIPERMATGCFS-LEILALSNN-SLQGHIFSKKFSLTNLMTLQLDGN 202
           +  LD+S   L    P   +      L  L +    +L G I      LT L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 203 NFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQ 262
           N SG IP+ LS+ + L  L  S N LSG +P  + +L  LV I    N + G IP  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 263 LRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC 322
              L      +                         +     SV+  S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 323 LHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNT 382
                  ++     L+ L L NN I G +P  L QLK +  +++S NNL G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 383 SLSE 386
               
Sbjct: 292 RFDV 295

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 4e-15
 Identities = 55/298 (18%), Positives = 94/298 (31%), Gaps = 40/298 (13%)

Query: 237 GNLSFLVDIIMPNNNLEGLIPI--EFCQLRFLRILDLSN--NTIFGTLPSCFSPAYIEQV 292
                + ++ +   NL    PI      L +L  L +    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 293 HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIP 352
           +++   + G +   +     LVTLD SYN L G++P  I  LP L  +    N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 353 VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKT 412
                  ++        N      P           D                       
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL---------------------- 204

Query: 413 ALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL 472
                               D           ++             +  +  ++ G+DL
Sbjct: 205 -------------SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 473 SCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 530
             N++ G +P  +  L  +H+LN+S NNL G IP    NL++ +    + N      P
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.2 bits (170), Expect = 8e-14
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 26/262 (9%)

Query: 47  LKNANLSHLNLSGEFP-NWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
           + N +LS LNL   +P    + N   L  L +   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
                  +  + +  L+  + S NA +G++P S + +  L  +    N+++G IP+   +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLD----------------------GNN 203
                  + +S N L G I     +L                                 N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 204 FSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQL 263
                   +   + L GL L +N + G +P+ L  L FL  + +  NNL G IP +   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 264 RFLRILDLSNNTIF--GTLPSC 283
           +   +   +NN       LP+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 20/260 (7%)

Query: 289 IEQVHLSKNKIEGRLESVIPDS----PNLVTLDLSYNC-LHGSIPNRIDRLPQLSYLLLA 343
           +  + LS   +       IP S    P L  L +     L G IP  I +L QL YL + 
Sbjct: 52  VNNLDLSGLNLPKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 344 NNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRAS 403
           +  + G IP  L Q+K +  +D S+N LSG +PP + +     G        S +   + 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 404 GYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRI 463
           G  S    +   +    +      +          +  M + +       + +       
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 523
             S+                       ++ L+L +N + GT+P   + LK + SL++S+N
Sbjct: 230 KNSLAFDLGKVG-----------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 524 LLHGKIPS--QLTVLTTLAV 541
            L G+IP    L      A 
Sbjct: 279 NLCGEIPQGGNLQRFDVSAY 298

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 4e-18
 Identities = 54/283 (19%), Positives = 83/283 (29%), Gaps = 9/283 (3%)

Query: 92  SHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDIS 151
            ++   T        Q  +PV I      +    L  N  +    +SF   + L  L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLH 64

Query: 152 YNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPES 211
            N L               ++    N  L+    +    L  L TL LD        P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDL 271
                 L  LYL DN L         +L  L  + +  N +  +    F  L  L  L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 272 SNNTIFGTLPSCFSPAYIEQVHL-SKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNR 330
             N +    P  F             N +       +     L  L L+ N        R
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 331 IDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
                 L     +++ +   +P +L       L  L+ N+L G
Sbjct: 245 -PLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 51/276 (18%), Positives = 90/276 (32%), Gaps = 10/276 (3%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           +     L    P  +       + + L  N +         + + L  L + +N      
Sbjct: 17  SCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL 170
                                    P++F  +  L  L +       E+   +  G  +L
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAAL 131

Query: 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG 230
           + L L +N+LQ         L NL  L L GN  S     +      L  L L  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 231 EIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIE 290
             P    +L  L+ + +  NNL  L       LR L+ L L++N       +    A+++
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 291 QVHLSKNKIEGRLESVIPDS-PNLVTLDLSYNCLHG 325
           +   S +++       +P          L+ N L G
Sbjct: 252 KFRGSSSEVPC----SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 2/189 (1%)

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRL-GGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
                + L GN  S     S   CR L      S+     +   + G        +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAY-IEQVHLSKNKIEGRLESVIPD 309
            L  + P  F  L  L  L L    +    P  F     ++ ++L  N ++   +    D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
             NL  L L  N +          L  L  LLL  N +    P     L  +  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 370 NLSGHIPPC 378
           NLS      
Sbjct: 212 NLSALPTEA 220

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 4/175 (2%)

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL 266
            +P  +    +   ++L  N +S            L  + + +N L  +    F  L  L
Sbjct: 25  AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 267 RILDLSNNTIFGTL-PSCFSP-AYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLH 324
             LDLS+N    ++ P+ F     +  +HL +  ++     +      L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 325 GSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCL 379
               +    L  L++L L  N I          L  +  + L  N ++   P   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 9/178 (5%)

Query: 359 KEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATT 418
              Q I L  N +S               +   +   S+   R    A +          
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACR----NLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 419 PFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLT 478
             ++      P     +            +             R L ++  + L  N L 
Sbjct: 88  SDNAQLRSVDPATFHGL-----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 479 GEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVL 536
                    L  +  L L  N ++      F  L  ++ L L  N +    P     L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 8e-18
 Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 12/268 (4%)

Query: 87  RMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA 146
           ++P       A LD+ NN        +    L  L    L  N  +   P +FA +  L 
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 147 RLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSG 206
           RL +S NQL  E+PE+M      L +       ++  +F+   +   ++ L  +    SG
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG 140

Query: 207 EIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL 266
               +    ++L  + ++D +++        +L+ L    +  N +  +       L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHG- 325
             L LS N+I        +     +     N    ++   + D   +  + L  N +   
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 326 -----SIPNRIDRLPQLSYLLLANNYIE 348
                  P    +    S + L +N ++
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 3e-16
 Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 7/240 (2%)

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTN 193
            +P         A LD+  N++T  I +       +L  L L NN +          L  
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
           L  L L  N       +     + L         +   +   L  +  + ++        
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 254 GLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNL 313
           G+    F  ++ L  + +++  I  T+P    P+ + ++HL  NKI     + +    NL
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNL 197

Query: 314 VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSG 373
             L LS+N +       +   P L  L L NN +  ++P  L   K +Q++ L +NN+S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 7e-16
 Identities = 46/260 (17%), Positives = 82/260 (31%), Gaps = 12/260 (4%)

Query: 70  TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN 129
            +   L L NN +         + + L TL + NN      P      L  L    LS+N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKN 89

Query: 130 AFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKF 189
                       +Q L   +    ++   +   +      +  L  +     G       
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQ 147

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
            +  L  +++   N +  IP+ L     L  L+L  N ++      L  L+ L  + +  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEG------RL 303
           N++  +          LR L L+NN +           YI+ V+L  N I          
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 304 ESVIPDSPNLVTLDLSYNCL 323
                   +   + L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 3e-15
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 3/187 (1%)

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
            +   L L  N  +          + L  L L +N +S   P     L  L  + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP 311
           L+ L       L+ LR+ +     +  ++ +  +   + ++  +  K  G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
            L  + ++   +  +IP  +   P L+ L L  N I       L  L  +  + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 372 SGHIPPC 378
           S      
Sbjct: 208 SAVDNGS 214

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 3e-13
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 7/239 (2%)

Query: 148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE 207
           +  S   L  ++P+ +        +L L NN +         +L NL TL L  N  S  
Sbjct: 15  VQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
            P + +   +L  LYLS N L     +    L  L         +   +     Q+  + 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 268 ILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI 327
           +      +      +      +  + ++   I    + +    P+L  L L  N +    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

Query: 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
              +  L  L+ L L+ N I       L     ++ + L++N L         +  +  
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 40/255 (15%), Positives = 71/255 (27%), Gaps = 15/255 (5%)

Query: 286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANN 345
           P     + L  NKI    +    +  NL TL L  N +    P     L +L  L L+ N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 346 YIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGY 405
            ++         L+E+++ +     +   +   L    + E    P+  +    G   G 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 406 AS-SYTKTALNATTPFSSSCG--------RGYPYALDYVGSRTPPMGKEETIQFTTKNMS 456
              SY + A    T                G         S        +         +
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 457 YYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTF------S 510
                   T         N    ++P  +     I  + L +NN++      F      +
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 511 NLKQIESLDLSYNLL 525
                  + L  N +
Sbjct: 270 KKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 43/243 (17%), Positives = 68/243 (27%), Gaps = 41/243 (16%)

Query: 302 RLESVIPD-SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360
            LE V  D  P+   LDL  N +          L  L  L+L NN I    P     L +
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 361 VQLIDLSHNNLSGHIPP-CLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTP 419
           ++ + LS N L             L    +E      S     +        T    ++ 
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 420 FSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTG 479
             +   +G                                    +  +  I ++   +T 
Sbjct: 141 IENGAFQG------------------------------------MKKLSYIRIADTNIT- 163

Query: 480 EIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
            IP   G    +  L+L  N +T     +   L  +  L LS+N +       L     L
Sbjct: 164 TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

Query: 540 AVF 542
              
Sbjct: 222 REL 224

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 14/214 (6%)

Query: 22  QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNS 81
           +L  + LS         K      +L+        +     N L  N   +  L      
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLK 137

Query: 82  LFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFAD 141
             G         +KL+ + +++      IP  +    P L E +L  N       +S   
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKG 193

Query: 142 MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG 201
           +  LA+L +S+N ++      +      L  L L+NN L             +  + L  
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHN 251

Query: 202 NNFSG------EIPESLSKCRRLGGLYLSDNHLS 229
           NN S         P   +K     G+ L  N + 
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 469 GIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 528
            +  S   L  ++P  +   T +  L+L +N +T      F NLK + +L L  N +   
Sbjct: 14  VVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 529 IPSQLTVLTTL 539
            P     L  L
Sbjct: 71  SPGAFAPLVKL 81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 68/339 (20%), Positives = 112/339 (33%), Gaps = 28/339 (8%)

Query: 51  NLSHLNLSGEFPNWL--VENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQG 108
            ++ L         +  VE   NL  +  +NN L      P+ +  KL  + ++NN    
Sbjct: 45  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD 102

Query: 109 HIPVEIGT--YLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATG 166
             P+   T      L    ++      ++ +          +            ++++ G
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 167 CFSLEILALSNNS---------LQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRR 217
               ++  L+N +          +    S    LTNL +L    N  S   P  +     
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTN 220

Query: 218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
           L  L L+ N L       L +L+ L D+ + NN +  L P     L  L  L L  N I 
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276

Query: 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQL 337
              P     A            +      I +  NL  L L +N +    P  +  L +L
Sbjct: 277 NISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 338 SYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
             L  ANN +       L  L  +  +   HN +S   P
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 49/231 (21%), Positives = 76/231 (32%), Gaps = 40/231 (17%)

Query: 139 FADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQ 198
            A +  L  L  + NQ++   P  +     +L+ L+L+ N L+        SLTNL  L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 199 LDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPI 258
           L  N  S   P  LS   +L  L L  N +S   P             +  N  +     
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDIS 301

Query: 259 EFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDL 318
               L+ L  L L  N I    P                         +     L  L  
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP-------------------------VSSLTKLQRLFF 336

Query: 319 SYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
           + N +  S  + +  L  +++L   +N I    P  L  L  +  + L+  
Sbjct: 337 ANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 55/426 (12%), Positives = 117/426 (27%), Gaps = 80/426 (18%)

Query: 135 IPSSFAD--MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLT 192
           I   F D  +    +  +    +T  + +        +  L      ++         L 
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYLN 66

Query: 193 NLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           NL  +    N  +   P  L    +L  + +++N ++   P         + +       
Sbjct: 67  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 253 EGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS-- 310
              +       R     +  ++    +  +                +         D   
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 311 ------------PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQL 358
                        NL +L  + N +    P  I     L  L L  N ++      L  L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASL 240

Query: 359 KEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTAL 414
             +  +DL++N +S   P      L    L       ++P +                  
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG----------------- 283

Query: 415 NATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSC 474
                                      +     ++     +        L ++  + L  
Sbjct: 284 ---------------------------LTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 475 NKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-SQL 533
           N ++   P  +  LTK+  L  ++N ++    ++ +NL  I  L   +N +    P + L
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL 372

Query: 534 TVLTTL 539
           T +T L
Sbjct: 373 TRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 19/200 (9%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
             ++  +S   P       TNL+ L L  N L       + S   L  LD++NN      
Sbjct: 203 IATNNQISDITPLG---ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSL 170
           P+     L  L E  L  N  +   P     +  L  L                +   +L
Sbjct: 258 PLS---GLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 171 EILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG 230
             L L  N++         SLT L  L    N  S     SL+    +  L    N +S 
Sbjct: 310 TYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 231 EIPRWLGNLSFLVDIIMPNN 250
             P  L NL+ +  + + + 
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 4e-13
 Identities = 63/370 (17%), Positives = 119/370 (32%), Gaps = 30/370 (8%)

Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE 231
              L   ++   +      L  + TLQ D         + +     L  +  S+N L+  
Sbjct: 26  KTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 232 IPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQ 291
            P  L NL+ LVDI+M NN +  + P+          L  +  T    L +  +   +E 
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 292 VHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL--------------HGSIPNRIDRLPQL 337
              + + I            +          L                S  + + +L  L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 338 SYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP----PCLVNTSLSEGHDEPVA 393
             L+  NN I    P+ +     +  + L+ N L           L +  L+      +A
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 257

Query: 394 PTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTK 453
           P S           +   + ++     ++              S    +     +     
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 454 NMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLK 513
           N+S       LT +  +  + NK++    + +  LT I+ L+  HN ++   P   +NL 
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

Query: 514 QIESLDLSYN 523
           +I  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 42  YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 101
            +  +L    L   N+S   P   V + T L+ L  ANN +       + +   +  L  
Sbjct: 304 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSA 358

Query: 102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNA 130
            +N      P+     L  + +  L+  A
Sbjct: 359 GHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 37/290 (12%), Positives = 85/290 (29%), Gaps = 21/290 (7%)

Query: 98  TLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG 157
           TLD++       +   +     G++ F   R+  +  +   F+  + +  +D+S + +  
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 158 EIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRR 217
                + + C  L+ L+L    L   I +     +NL+ L L G +   E     +    
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSS 119

Query: 218 LGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF 277
              L   +     +       ++                     +     ++    N + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 278 GTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSY-NCLHGSIPNRIDRLPQ 336
             L               +                L  L LS    +       +  +P 
Sbjct: 180 LDLSDSVMLKNDCFQEFFQL-------------NYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 337 LSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSE 386
           L  L +     +G + +    L  +Q   ++ ++ +    P + N    E
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 31/250 (12%), Positives = 75/250 (30%), Gaps = 5/250 (2%)

Query: 294 LSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGE-IP 352
           L+   +   +   +  S  ++      + +   +        ++ ++ L+N+ IE   + 
Sbjct: 7   LTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 353 VQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKT 412
             L Q  ++Q + L    LS  I   L   S           +  S        SS ++ 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV-RLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 413 ALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDL 472
                +       +    A+ +V      +      +   K+       R    +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 473 SCNKLTGEIPTQIGYLTKIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 531
               L  +   +   L  +  L+LS   ++          +  +++L +   +  G +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 532 QLTVLTTLAV 541
               L  L +
Sbjct: 244 LKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 41/270 (15%), Positives = 78/270 (28%), Gaps = 28/270 (10%)

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR-LESVI 307
             NL   +       + +       + +   L   FSP  ++ + LS + IE   L  ++
Sbjct: 9   GKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS 367
                L  L L    L   I N + +   L  L L+      E  +Q       +L +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 368 HNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG 427
            +         +                S                  N      S+  R 
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK--------------NLQKSDLSTLVRR 173

Query: 428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLS-CNKLTGEIPTQIG 486
            P  +    S +  +  +   +F   N   +           + LS C  +  E   ++G
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH-----------LSLSRCYDIIPETLLELG 222

Query: 487 YLTKIHALNLSHNNLTGTIPTTFSNLKQIE 516
            +  +  L +      GT+      L  ++
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 38/240 (15%), Positives = 87/240 (36%), Gaps = 12/240 (5%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           +L+  NL  +    L+     +       + +         S  ++  +D+SN+  +   
Sbjct: 6   DLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 111 PVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQ-LTGEIPERMATGCFS 169
              I +    L   +L     +  I ++ A    L RL++S     +    + + + C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 170 LEIL------ALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYL 223
           L+ L        +   +Q  +     ++T L       N    ++   + +C  L  L L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 224 SDNHL-SGEIPRWLGNLSFLVDIIMPN-NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLP 281
           SD+ +   +  +    L++L  + +    ++     +E  ++  L+ L +      GTL 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 8/204 (3%)

Query: 47  LKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF 106
           +++ +LS+  +     + ++   + L+ L L    L       +  +  L  L++S    
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 107 QGHIPV-EIGTYLPGLMEFNL------SRNAFNGSIPSSFADMQMLARLDISYNQLTGEI 159
                +  + +    L E NL      +      ++      +  L       N    ++
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 160 PERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDG-NNFSGEIPESLSKCRRL 218
              +      + +    +  L+   F + F L  L  L L    +   E    L +   L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 219 GGLYLSDNHLSGEIPRWLGNLSFL 242
             L +      G +      L  L
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHL 251

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 8e-09
 Identities = 56/458 (12%), Positives = 111/458 (24%), Gaps = 29/458 (6%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG----SIPSSFADMQMLARLDIS 151
           + +LD+           E+   L       L            I S+      LA L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 152 YNQLTGE----IPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGE 207
            N+L       + + + T    ++ L+L N  L G       S    +    + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 208 IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLR 267
           + ++  +    G L         ++     + +    +            +         
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 268 ILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI 327
                        P       +E   ++ +        V   +        S       +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEG 387
                 L   S  L      E  I  + C      L               L +      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--- 300

Query: 388 HDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEET 447
                      C   S +  S + TA   +   S      +   L    +R    G  E 
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 448 IQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNLSHNNLTG 503
            Q   +  S          +  + L+   ++      +   +     +  L+LS+N L  
Sbjct: 361 CQGLGQPGS---------VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 504 TIPTTFS-----NLKQIESLDLSYNLLHGKIPSQLTVL 536
                           +E L L       ++  +L  L
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 169 SLEILALSNNSLQGHIFSKKFS-LTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYL 223
            ++ L +    L    +++    L     ++LD    +      I  +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 224 SDNHLSGEIPRWLGNL 239
             N L       +   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 310 SPNLVTLDLSYNCL-HGSIPNRIDRLPQLSYLLLANNYIEGE----IPVQLCQLKEVQLI 364
           S ++ +LD+    L        +  L Q   + L +  +       I   L     +  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 365 DLSHNNLSGHIPPCL 379
           +L  N L      C+
Sbjct: 61  NLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDV 101
           D+++ ++    LS      L+      + + L +  L           +  +  LA L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 102 SNNFFQGHIPVEIGTYLP 119
            +N         +   L 
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 183 HIFSKKFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLSGEIPRWLG- 237
                    + L  L L   + S      +  +L     L  L LS+N L       L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 238 ----NLSFLVDIIMPNNNLEGLIPIEFCQLRF----LRIL 269
                   L  +++ +      +      L      LR++
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 289 IEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYNCLHGSIPNRI-----DRLPQLSY 339
           +  + L+   +       L + +  + +L  LDLS NCL  +   ++          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 340 LLLANNYIEGEIPVQLCQLKE 360
           L+L + Y   E+  +L  L++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 21/96 (21%)

Query: 193 NLMTLQLDGNNFSGE-IPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
           ++ +L +     S     E L   ++   + L D  L+    + + +             
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------ 50

Query: 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPA 287
                         L  L+L +N +      C    
Sbjct: 51  --------LRVNPALAELNLRSNELGDVGVHCVLQG 78

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 51/327 (15%), Positives = 91/327 (27%), Gaps = 16/327 (4%)

Query: 215 CRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNN 274
            R+   L L++  LS  +P    +L  L   +   N+L  L P     L+ L + + +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLTEL-PELPQSLKSLLVDNNNLK 91

Query: 275 TIFGTLPSCFSPAY--IEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRID 332
            +    P          +   L + +    L+ +  D+ +L  L      L         
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 333 RLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPV 392
                    L            L +L ++ L   S    +  +       +L        
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 393 APTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTT 452
                        +        N  T             +                    
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 453 KNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNL 512
            +        +  S+  +++S NKL  E+P     L +   L  S N+L   +P    NL
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNL 326

Query: 513 KQIESLDLSYNLLHGKIPSQLTVLTTL 539
           K    L + YN L  + P     +  L
Sbjct: 327 K---QLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 48/306 (15%), Positives = 83/306 (27%), Gaps = 32/306 (10%)

Query: 258 IEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIE------GRLESVIPDSP 311
           +  C  R    L+L+N  +  +LP    P ++E +  S N +         L+S++ D+ 
Sbjct: 32  LRDCLDRQAHELELNNLGL-SSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNN 88

Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL 371
           NL  L      L     +             +   I       L +L ++          
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 372 SGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTK------------------TA 413
           +  +       +L           S         +                       T 
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 414 LNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLS 473
           + A      +     P                E  Q  T           L+ +      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 474 CNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQL 533
            N  + EI +       +  LN+S+N L   +P     L   E L  S+N L  ++P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELP 323

Query: 534 TVLTTL 539
             L  L
Sbjct: 324 QNLKQL 329

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPR 234
              N+    I S      +L  L +  N    E+P    +  RL     S NHL+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPE 321

Query: 235 WLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRI 268
              NL  L    +  N L    P     +  LR+
Sbjct: 322 LPQNLKQL---HVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 122 MEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQ 181
                  NA +  I S       L  L++S N+L  E+P         LE L  S N L 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA 317

Query: 182 GHIFSKKFSLTNLMTLQLDGNNFSG--EIPESLSKCR 216
                      NL  L ++ N      +IPES+   R
Sbjct: 318 ----EVPELPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 198 QLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP 257
               N  S EI         L  L +S+N L  E+P     L  L   I   N+L  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAEVPE 321

Query: 258 IEFCQLRFLRILDLSNNTI 276
           +     + L+ L +  N +
Sbjct: 322 L----PQNLKQLHVEYNPL 336

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 8/202 (3%)

Query: 96  LATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQL 155
              ++         +P ++          +LS N       ++      L +L++   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 156 TGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKC 215
              + +    G   +      +++    +     +L  L  L +  N  +     +L   
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNT 275
             L  LYL  N L    P  L     L  + + NNNL  L       L  L  L L  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 276 IFGTLPSCFSPAYIEQVHLSKN 297
           ++      F    +    L  N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 17/218 (7%)

Query: 309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSH 368
              + + ++     L  ++P  +      + L L+ N +       L     +  ++L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 369 NNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGY 428
             L+                     P   +   +     S                    
Sbjct: 65  AELTKLQVDG-------------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 429 PYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYL 488
             +L     R     +E  ++                 +  + L+ N LT      +  L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 489 TKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526
             +  L L  N+L  TIP  F     +    L  N   
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 6/194 (3%)

Query: 190 SLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPN 249
            + + + +  D  N +  +P  L K      L+LS+N L       L   + L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 250 NNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD 309
           +  E         L  L  LDLS+N +        +   +  + +S N++       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 310 SPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN 369
              L  L L  N L    P  +   P+L  L LANN +       L  L+ +  + L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 370 NLSGHIPPCLVNTS 383
           +L   IP     + 
Sbjct: 183 SLY-TIPKGFFGSH 195

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 39/207 (18%), Positives = 59/207 (28%), Gaps = 10/207 (4%)

Query: 46  DLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNF 105
                N    NL+   P  L     +   L L+ N L+      +  + +L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 106 FQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMAT 165
                       LP L   +LS N              +   +          +P     
Sbjct: 67  LTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPAL--TVLDVSFNRLTSLPLGALR 121

Query: 166 GCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD 225
           G   L+ L L  N L+            L  L L  NN +      L+    L  L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 226 NHLSGEIPRWLGNLSFLVDIIMPNNNL 252
           N L   IP+       L    +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 18/225 (8%)

Query: 305 SVIPDS--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
            + PD    N + +    + +  ++      L  ++ L      +     VQ   L  + 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLI 66

Query: 363 LIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS 422
            ++L  N +       L N +     +    P  +    A   +           T  + 
Sbjct: 67  GLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 423 SCGRGYPYALDYVG------SRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNK 476
             G      L          S    +   + +      +S       L+ +  +    NK
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 477 LTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
           ++   P  +  L  +  ++L +N ++   P   +N   +  + L+
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 212 LSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDL 271
           L+   +L  L   DN +S   P  L +L  L+++ + NN +  + P        L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 272 SN 273
           +N
Sbjct: 225 TN 226

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 46/351 (13%), Positives = 108/351 (30%), Gaps = 32/351 (9%)

Query: 39  KFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSL----FGSFRMPIHSHQ 94
           +F      LK   ++  +        L   + +++ ++L+ N++           I S +
Sbjct: 2   RFSIEGKSLKLDAITTEDEK-SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 95  KLATLDVSNNFFQGHIPVEIGTYLPGLME--FNLSRNAFNGSIPSSFADMQMLARLDISY 152
            L   + S+ F    +  EI   L  L++      +        ++F        +D   
Sbjct: 60  DLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118

Query: 153 NQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESL 212
                E       G        ++    +  +  K  +   L ++    N       +  
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-- 176

Query: 213 SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS 272
                    +         +       + +    + +  LEGL   +  ++  L+    +
Sbjct: 177 --------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 228

Query: 273 NNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPD------SPNLVTLDLSYNCLHGS 326
           +        +  S   + ++ L+   +  R  + + D      +  L TL L YN +   
Sbjct: 229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 288

Query: 327 IPNRI-----DRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS 372
               +     +++P L +L L  N    E    + +++EV         L 
Sbjct: 289 AVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV-FSTRGRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 27/305 (8%), Positives = 66/305 (21%), Gaps = 45/305 (14%)

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGR----LESVIPDSPNLVTLDLSYN 321
           L++  ++                ++++ LS N I       L   I    +L   + S  
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 322 CLH---GSIPNRIDRLPQLSYLL--LANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
                   IP  +  L Q       L    +         Q   +  +         ++ 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 377 PCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVG 436
              +           +   + +    +           N     S         +   + 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 437 SRTPPMGKEETIQFTTKNMSYYYQGRIL-------------------------TSMFGID 471
           +                 +      + L                          ++  + 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 472 LSCNKLTGEIPTQIG------YLTKIHALNLSHNNLTGTIPTT-----FSNLKQIESLDL 520
           L+   L+      +           +  L L +N +      T        +  +  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 521 SYNLL 525
           + N  
Sbjct: 310 NGNRF 314

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 137 SSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMT 196
           + + +      LD+   ++   I   +       + +  S+N +          L  L T
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 197 LQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG----EIPRWLGNLSFLVDIIMPNNNL 252
           L ++ N               L  L L++N L      +    L +L++L  +  P  N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 253 EGLIPIEFCQLRFLRILDLSNNT 275
           +        ++  +R+LD     
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQKVK 150

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 476 KLTGEIPTQIGY---LTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 526
           KLT E+  Q        +   L+L    +   I    + L Q +++D S N + 
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 22/231 (9%), Positives = 45/231 (19%), Gaps = 10/231 (4%)

Query: 302 RLESVIPDSP-NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKE 360
           ++  +  D P N + L      L             L  + ++ N +   I   +     
Sbjct: 19  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 361 VQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPF 420
                      +                + P             +     K         
Sbjct: 79  KLHEIRIEKANNLLYINPEAF------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 421 SSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGE 480
                                      +        +                 N L   
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 481 IPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS 531
                   +    L++S   +         NLK++ +    YNL   K+P+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 23/225 (10%), Positives = 50/225 (22%), Gaps = 9/225 (4%)

Query: 315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGH 374
                 + +   IP+ +        L      +            +++ I++S N++   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 375 IPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDY 434
           I   + +              +        + +      L  +          +      
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 435 VGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHAL 494
                               +   ++  IL       L+ N +                 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVIL------WLNKNGIQEIHNCAFNGTQLDELN 182

Query: 495 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTL 539
              +NNL       F        LD+S   +H      L  L  L
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 26/234 (11%), Positives = 57/234 (24%), Gaps = 9/234 (3%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIH--SHQKLATLDVSNNFFQG 108
                 ++ E P+ L     N   L      L    +         +   +  ++     
Sbjct: 14  LCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 109 HIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCF 168
              V         +    + N    +  +      +   L  +          ++ +   
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL 228
            L  +  + N       S        + L L+ N        + +  +        +N+L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPS 282
                      S  V + +    +  L       L+ LR     N      LP+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTN 193
            IP           L ++ N+L     + +      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 194 LMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLE 253
           +  LQL  N       +      +L  L L DN +S  +P    +L+ L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 254 GLIPIEFCQLRFLRILDLSNNTIFGTLPS 282
               + +    +LR   L+        PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 28/181 (15%)

Query: 192 TNLMTLQLDGNNFSGEIPESL-SKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNN 250
            +   L L+ N       + L  +   L  L L  N L+G  P      S + ++ +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 251 NLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDS 310
            ++ +    F  L  L+ L+L +N I   +P  F            +        +   +
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 311 PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNN 370
             L    L+        P++                           +++VQ+ DL H+ 
Sbjct: 149 EWLRKKSLNGGAARCGAPSK---------------------------VRDVQIKDLPHSE 181

Query: 371 L 371
            
Sbjct: 182 F 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEI 208
           ++   Q+  ++   M+   +     AL    L         +    + L    ++ +  +
Sbjct: 3   ELKPEQVE-QLKLIMSK-RYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATL 57

Query: 209 PESLSKCRRLGGLYLSDNHLSG--EIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFL 266
                    L  L LS+N L    ++   +     L  + +  N L+    ++  +   L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 267 RILDLSNNTIFGTLPSCFS 285
             L L  N++  T     +
Sbjct: 118 EELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 266 LRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCL-- 323
            + LDL        L +      I+ V   ++ +   L  +  + P L++L+LS N L  
Sbjct: 24  QQALDLKGLRSDPDLVAQ----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 324 HGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIP 376
              + + + + P L  L L+ N ++ E  +   +  +++ + L  N+LS    
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 125 NLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHI 184
           +L+      ++      + ++  LD+S+N+L    P         LE+L    +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVL--QASDNALEN 57

Query: 185 FSKKFSLTNLMTLQLDGNNF-SGEIPESLSKCRRLGGLYLSDNHLSGE 231
                +L  L  L L  N        + L  C RL  L L  N L  E
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 267 RILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS 326
           R+L L++  +   L        +  + LS N++     + +     L  L  S N L   
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 327 IPNRIDRLPQLSYLLLANNYIEG-EIPVQLCQLKEVQLIDLSHNNLSG 373
                    Q   LLL NN ++       L     + L++L  N+L  
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 249 NNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIP 308
           + +L  L  +E  QL  +  LDLS+N +    P+  +   +E +  S N +E        
Sbjct: 7   HKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64

Query: 309 DSPNLVTLDLSYNCL-HGSIPNRIDRLPQLSYLLLANNYIEGE 350
                  L L  N L   +    +   P+L  L L  N +  E
Sbjct: 65  PRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 51  NLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHI 110
           +L+H +L+    +  +E    +  L L++N L    R    +   L  L+V         
Sbjct: 4   HLAHKDLT-VLCH--LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALE 56

Query: 111 PVEIGTYLPGLMEFNLSRNAFNG-SIPSSFADMQMLARLDISYNQLTGEIPER 162
            V+    LP L E  L  N     +          L  L++  N L  E   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 172 ILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGE 231
           +L L++  L   +      L  +  L L  N      P +L+  R L  L  SDN L   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 232 IPRWLGNLSFLVDIIMPNNNLEGLIPIE-FCQLRFLRILDLSNNTI 276
                      +   + NN L+    I+       L +L+L  N++
Sbjct: 59  DGVANLPRLQELL--LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 196 TLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL 255
            L L   + +  +   L +   +  L LS N L    P  L  L  L  +   +N LE +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 256 IPIEFCQLRFLRILDLSNNTI--FGTLPSCFSPAYIEQVHLSKNKI---EGRLESVIPDS 310
             +       L+ L L NN +     +    S   +  ++L  N +   EG  E +    
Sbjct: 59  DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 311 PNLVTL 316
           P++ ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 74  TLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNG 133
            L LA+  L  +    +     +  LD+S+N  +   P      L  L     S NA   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALE- 56

Query: 134 SIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSL------QGHIFSK 187
                 A++  L  L +  N+L      +    C  L +L L  NSL      Q  +   
Sbjct: 57  -NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 188 KFSLTNLMT 196
             S+++++T
Sbjct: 116 LPSVSSILT 124

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 26/219 (11%), Positives = 60/219 (27%), Gaps = 28/219 (12%)

Query: 305 SVIPDS--PNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQ 362
            +  D      +  +L    +  ++    + L  +  ++  N+ I+    +Q   L  V 
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVT 71

Query: 363 LIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSS 422
            + L+ N L+   P                    ++            K    ++     
Sbjct: 72  KLFLNGNKLTDIKP-------------------LANLKNLGWLFLDENKVKDLSSLKDLK 112

Query: 423 SCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIP 482
                                 +    +   N           +        +    +I 
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172

Query: 483 TQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 521
             +  LTK+  L LS N+++       + LK ++ L+L 
Sbjct: 173 P-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 30/213 (14%), Positives = 64/213 (30%), Gaps = 18/213 (8%)

Query: 134 SIPSSFAD--MQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL 191
            I   F+D       + ++    +T  + +       S++ +  +N+ ++         L
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKS--VQGIQYL 67

Query: 192 TNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNN 251
            N+  L L+GN  +   P +  K      L  +       +         L  + + +N 
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDL----KKLKSLSLEHNG 123

Query: 252 LEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSP 311
           +  +  +          L  +  T    L        +       + I       +    
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLT 178

Query: 312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLAN 344
            L  L LS N +   +   +  L  L  L L +
Sbjct: 179 KLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	543
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.8e-26  Score=227.73  Aligned_cols=342  Identities=23%  Similarity=0.301  Sum_probs=200.8

Q ss_pred             cCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCE
Q 040468           68 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLAR  147 (543)
Q Consensus        68 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~  147 (543)
                      .+.+|++|+++++++...  .++..+++|++|++++|.++ .++. +.. +++|++|++++|++.+.  ..+.++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~-L~~L~~L~L~~n~i~~i--~~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIADI--TPLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-ccC-Ccccccccccccccccc--ccccccccccc
Confidence            345566666666665432  34556666666666666665 3432 332 56666666666666532  23556666666


Q ss_pred             EecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCc
Q 040468          148 LDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNH  227 (543)
Q Consensus       148 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  227 (543)
                      |+++++.+. ..+..  .....+.......+.+.....................     .....+.............+.
T Consensus       115 L~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-ccccc--ccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccc
Confidence            666666555 22221  1233444444444443322211111111111111111     111122333344444444443


Q ss_pred             CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCC
Q 040468          228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVI  307 (543)
Q Consensus       228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  307 (543)
                      ..  ....+..+++++.+.+++|.+.+..+  +..+++|+.+++++|.+.+ ++.+..++.|+.+++.+|.+++..+  +
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~  259 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--L  259 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCc--c
Confidence            32  23335566677777777777665533  3445677777777776664 3333346777777777777765432  5


Q ss_pred             CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCC
Q 040468          308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEG  387 (543)
Q Consensus       308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  387 (543)
                      ..+++|++|+++++++++..  .+..++.++.+.+.+|.+.+ + ..+..+++++.|++++|.+.+. ++ +.       
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-~~-l~-------  326 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-SP-VS-------  326 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-GG-GG-------
T ss_pred             cccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCC-cc-cc-------
Confidence            66788888888888877432  36677788888888888773 2 3467788888888888877531 10 11       


Q ss_pred             CCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCce
Q 040468          388 HDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSM  467 (543)
Q Consensus       388 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  467 (543)
                                                                                                 .+++|
T Consensus       327 ---------------------------------------------------------------------------~l~~L  331 (384)
T d2omza2         327 ---------------------------------------------------------------------------SLTKL  331 (384)
T ss_dssp             ---------------------------------------------------------------------------GCTTC
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       16688


Q ss_pred             eEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCC
Q 040468          468 FGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  523 (543)
Q Consensus       468 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n  523 (543)
                      ++|++++|+++ .++ .+..+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       332 ~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88888888888 444 58888888888888888886554  788888888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3e-24  Score=211.52  Aligned_cols=320  Identities=23%  Similarity=0.262  Sum_probs=225.5

Q ss_pred             ceeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEc
Q 040468           22 QLTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  101 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l  101 (543)
                      +|++|++++++++..  +.+..+++|++|++++|+++ .++.  +.++++|++|++++|.+.+..+  +..+++|+.|++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~  117 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  117 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccccc--cccccccccccc
Confidence            688888888888743  45778888888888888887 4443  5788888888888888765433  778888888888


Q ss_pred             CCCccccCCchhhhcCCCCCcEEEcCCCcCccC-------------------CchhhcCCCCCCEEecccccccccCchH
Q 040468          102 SNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGS-------------------IPSSFADMQMLARLDISYNQLTGEIPER  162 (543)
Q Consensus       102 s~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~-------------------~~~~l~~l~~L~~L~L~~~~~~~~~~~~  162 (543)
                      +++.+. .++....  ...+.......+.+...                   ....+...+.........+...  .. .
T Consensus       118 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  191 (384)
T d2omza2         118 FNNQIT-DIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DI-S  191 (384)
T ss_dssp             CSSCCC-CCGGGTT--CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CC-G
T ss_pred             cccccc-ccccccc--cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--cc-c
Confidence            888776 3332222  34555555544433211                   1112222233333333333322  11 2


Q ss_pred             hhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCC
Q 040468          163 MATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFL  242 (543)
Q Consensus       163 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  242 (543)
                      ....+++++.+++++|.+.+..+  ...+++|+++++.+|.+...  ..+..+++|+.+++++|.+....  .+..+++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L  265 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKL  265 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccC
Confidence            23447888899999888775433  45578899999998887743  35678888999999998887433  37788899


Q ss_pred             cEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccc
Q 040468          243 VDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNC  322 (543)
Q Consensus       243 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  322 (543)
                      +.++++++.+.+..  .+..++.++.+.+..+.+.+ ......++.++.|++++|++++..  .+..+++|++|++++|+
T Consensus       266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         266 TELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             CEeeccCcccCCCC--cccccccccccccccccccc-ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            99999888887542  36677888899988888764 334445788899999999887653  36778899999999998


Q ss_pred             cccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCC
Q 040468          323 LHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHN  369 (543)
Q Consensus       323 i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  369 (543)
                      +++ ++ .+..+++|+.|++++|++++..|  +.++++|+.|++++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            884 33 58888999999999999885433  788899999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2.3e-25  Score=212.94  Aligned_cols=253  Identities=30%  Similarity=0.443  Sum_probs=175.6

Q ss_pred             CcCEEeCCCCccCc--cCchhhhcCCCCCEEEccC-CcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEE
Q 040468          193 NLMTLQLDGNNFSG--EIPESLSKCRRLGGLYLSD-NHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRIL  269 (543)
Q Consensus       193 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  269 (543)
                      .++.|++.++.+.+  .+|..+.++++|++|++++ |.+....|..++++++|++|++++|.+.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            34555555554443  2445555566666666654 44444455556666666666666666655555555556666666


Q ss_pred             EccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCc-cEEEccccccccccCccCCCCCCCCEEEccCccc
Q 040468          270 DLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNL-VTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYI  347 (543)
Q Consensus       270 ~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i  347 (543)
                      ++++|.+....+..+. ++.++.+++++|.+.+..+..+..+..+ +.+++++|++++..+..+..+.. ..+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            6666655544443332 5566666666666665555555555554 78888888888777777777654 4788888888


Q ss_pred             ccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCC
Q 040468          348 EGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRG  427 (543)
Q Consensus       348 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (543)
                      .+.+|..+..+++++.+++++|.+.+.+| .+..                                              
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~----------------------------------------------  242 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL----------------------------------------------  242 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC----------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccc-cccc----------------------------------------------
Confidence            87888888888999999999998864332 2111                                              


Q ss_pred             CcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccCh
Q 040468          428 YPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPT  507 (543)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~  507 (543)
                                                          +++|+.|+|++|++++.+|..|+++++|++|+|++|++++.+|+
T Consensus       243 ------------------------------------~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         243 ------------------------------------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ------------------------------------ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence                                                56899999999999989999999999999999999999988885


Q ss_pred             hhhccCCCCeeeCCCCcCcccCC
Q 040468          508 TFSNLKQIESLDLSYNLLHGKIP  530 (543)
Q Consensus       508 ~~~~l~~L~~L~l~~n~i~~~~~  530 (543)
                       ++.+++|+.+++++|+..+-.|
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEESTT
T ss_pred             -cccCCCCCHHHhCCCccccCCC
Confidence             5889999999999998654333

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.6e-24  Score=206.93  Aligned_cols=248  Identities=29%  Similarity=0.406  Sum_probs=169.8

Q ss_pred             ceeEEEeeCCCCCCC--cchhccCCCCCCEEeccC-CcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCE
Q 040468           22 QLTSISLSGYIDGGT--FPKFLYHQHDLKNANLSH-LNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLAT   98 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~   98 (543)
                      ++++|+|+++.+.+.  +|..+.++++|++|+|++ |.+++.+|..+ .++++|++|++++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence            588889988888874  678888888899998886 67877888774 77888888888888888877777888888888


Q ss_pred             EEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCC-CEEecccccccccCchHhhhCCCCCCEEEccC
Q 040468           99 LDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQML-ARLDISYNQLTGEIPERMATGCFSLEILALSN  177 (543)
Q Consensus        99 L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L-~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  177 (543)
                      +++++|.+...+|..+.. ++.++++++++|.+.+.+|..+..+..+ +.+++++|++.+..+..+.. + ....+++..
T Consensus       130 l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l-~~~~l~l~~  206 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-L-NLAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-C-CCSEEECCS
T ss_pred             cccccccccccCchhhcc-Ccccceeeccccccccccccccccccccccccccccccccccccccccc-c-ccccccccc
Confidence            888888877677777776 7888888888888877777777777665 77788888777555544322 3 333566666


Q ss_pred             CcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCc
Q 040468          178 NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIP  257 (543)
Q Consensus       178 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  257 (543)
                      +...+..+..+..+++++.+++.++.+.+.. ..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            6655555555556666666666666655332 234455555666666555554555555555555555555555554444


Q ss_pred             ccccCCCCCcEEEccCCc
Q 040468          258 IEFCQLRFLRILDLSNNT  275 (543)
Q Consensus       258 ~~l~~l~~L~~L~l~~~~  275 (543)
                      . +..+.+|+.+++++|+
T Consensus       286 ~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-STTGGGSCGGGTCSSS
T ss_pred             C-cccCCCCCHHHhCCCc
Confidence            2 3344455555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.8e-22  Score=190.57  Aligned_cols=245  Identities=22%  Similarity=0.288  Sum_probs=146.0

Q ss_pred             CCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEE
Q 040468           95 KLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILA  174 (543)
Q Consensus        95 ~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  174 (543)
                      ..+.++.++..++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            5667777777777 6776653   46778888887777444446777777777777777777 55445455567777777


Q ss_pred             ccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccc
Q 040468          175 LSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEG  254 (543)
Q Consensus       175 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  254 (543)
                      +++|+++.... .  ..+.+..|++..+.+....+..+.....+..+....+...                      ...
T Consensus        86 l~~n~l~~l~~-~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~----------------------~~~  140 (305)
T d1xkua_          86 LSKNQLKELPE-K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK----------------------SSG  140 (305)
T ss_dssp             CCSSCCSBCCS-S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC----------------------GGG
T ss_pred             ccCCccCcCcc-c--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc----------------------ccC
Confidence            77776653321 1  1345555555555554333333333334444443333211                      111


Q ss_pred             cCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCC
Q 040468          255 LIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRL  334 (543)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~  334 (543)
                      ..+..+..+++|+.+++.+|.+......  .+++++.|++.+|......+..+..++.+++|++++|.+++..+.++.++
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            2223445556666666666655532222  14566666666666665555566666777777777777765556666667


Q ss_pred             CCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          335 PQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      ++|+.|++++|+++ .+|..+..+++|++|++++|++.
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            77777777777666 45666666777777777777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.2e-21  Score=186.05  Aligned_cols=103  Identities=21%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             CCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEE
Q 040468           45 HDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEF  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L  124 (543)
                      +++++|+|++|+++ .+++..|.++++|++|+++++.+....+.+|..+++|++|++++|.++ .+|...   ...++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            34555555555444 333332344455555555555544444444455555555555555444 333322   2244444


Q ss_pred             EcCCCcCccCCchhhcCCCCCCEEeccc
Q 040468          125 NLSRNAFNGSIPSSFADMQMLARLDISY  152 (543)
Q Consensus       125 ~L~~~~i~~~~~~~l~~l~~L~~L~L~~  152 (543)
                      ++.+|.+....+..+.....+..++...
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             hccccchhhhhhhhhhcccccccccccc
Confidence            4444444433333333333444444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9e-22  Score=184.82  Aligned_cols=204  Identities=22%  Similarity=0.183  Sum_probs=142.7

Q ss_pred             CCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEcc-CCcCCCcccccccCCCCCcEEEc
Q 040468          169 SLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLS-DNHLSGEIPRWLGNLSFLVDIIM  247 (543)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-~~~~~~~~~~~l~~~~~L~~L~l  247 (543)
                      ++++|+|++|.++...+..+..+++|++|+++++.+....+..+.....++.+... .+.+....+..+..+++|+++++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34555555555544444445555555555555555554444445555555555543 23333344555666777777777


Q ss_pred             cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCC-cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc
Q 040468          248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFS-PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS  326 (543)
Q Consensus       248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  326 (543)
                      ++|.+....+..+....+|+.+++++|.+++..+..+. .++|+.|++++|.+++..+..|..+++|+++++++|++++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            77766655555666677777777777777766555553 67788888888888777777888889999999999998877


Q ss_pred             cCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          327 IPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       327 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      .|.+|..+++|+.|++++|++.+..+..|..+++|++|++++|++.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            7888899999999999999998777788888999999999999885

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.1e-22  Score=184.79  Aligned_cols=204  Identities=24%  Similarity=0.271  Sum_probs=95.4

Q ss_pred             CcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC-CCcCccCCchhhcCCCCCCEEec
Q 040468           72 LETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS-RNAFNGSIPSSFADMQMLARLDI  150 (543)
Q Consensus        72 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~-~~~i~~~~~~~l~~l~~L~~L~L  150 (543)
                      +++|+|++|+++...+.+|.++++|++|+++++.+. .++......+..++.+... .+.+....+..+.++++|++|++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            444444444443333334444444444444444444 2333333323444444332 22233233334444444444444


Q ss_pred             ccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCC
Q 040468          151 SYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSG  230 (543)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  230 (543)
                      ++|.+. .++...+...++|+.+++++|.++...+..+..+++|+.|++.+|.+....+..+.++++|+++++.+|.+..
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            444443 3333333334444555555554444434444444555555555555544444445555555555555555554


Q ss_pred             cccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCc
Q 040468          231 EIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIF  277 (543)
Q Consensus       231 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  277 (543)
                      ..|..|..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            44555555555555555555555554555555555555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-20  Score=173.37  Aligned_cols=128  Identities=24%  Similarity=0.158  Sum_probs=65.8

Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcC
Q 040468          216 RRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLS  295 (543)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  295 (543)
                      ..+.+++.+++.++ ..|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|.++.. +.             
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~~-------------   72 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-------------   72 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-------------
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-cc-------------
Confidence            34445555555555 2343332  3566666666666655455556666666666666555422 11             


Q ss_pred             CCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          296 KNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                                 +..+++|++|++++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.++++|++++|.+.
T Consensus        73 -----------~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          73 -----------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             -----------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             -----------cccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccc
Confidence                       223445555555555554 33444555555555555555554444444445555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=9.8e-18  Score=162.17  Aligned_cols=68  Identities=26%  Similarity=0.428  Sum_probs=52.8

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCccccccCcCC
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLTTLA  540 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  540 (543)
                      +++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|+.|++++|+++ .+|+.+.++..|+
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence            578999999999988 67754   568889999999988 56643   468999999999987 6777666665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3e-22  Score=201.80  Aligned_cols=69  Identities=13%  Similarity=0.022  Sum_probs=48.7

Q ss_pred             cCceeEEEcccCccccc----cChhhhcccccCeeeCcCCccccccChhhh-----ccCCCCeeeCCCCcCcccCCcc
Q 040468          464 LTSMFGIDLSCNKLTGE----IPTQIGYLTKIHALNLSHNNLTGTIPTTFS-----NLKQIESLDLSYNLLHGKIPSQ  532 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~~~  532 (543)
                      .+.|++|+|++|.+++.    ++..+..+++|++|+|++|.|++.....|.     ....|+.|++++|.+.......
T Consensus       368 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~  445 (460)
T d1z7xw1         368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  445 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             cCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence            34688888888888743    345567788899999999988865444442     2347999999999887544333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-19  Score=166.17  Aligned_cols=196  Identities=26%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             eeEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcC
Q 040468           23 LTSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVS  102 (543)
Q Consensus        23 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls  102 (543)
                      +.+++.++.+++ .+|..+.  +++++|+|++|.++ .++...+.++++|++|+|++|+++...  .++.+++|++|+++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLS   85 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECC
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--cccccccccccccc
Confidence            444555555555 3443332  35666666666665 344333455666666666666654332  23455666666666


Q ss_pred             CCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCC
Q 040468          103 NNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQG  182 (543)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  182 (543)
                      +|.+. ..+..+.. +++|++|+++++.+....+..+..+.++++|++++|.+. .++...+..+++++.+++++|+++.
T Consensus        86 ~N~l~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             SSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccc-cccccccc-ccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccc
Confidence            66555 33333322 556666666665555444445555555666666655555 4444444445555555555555554


Q ss_pred             cCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcC
Q 040468          183 HIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL  228 (543)
Q Consensus       183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  228 (543)
                      ..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            44444555555555555555555 3444444455555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=9.6e-17  Score=155.08  Aligned_cols=50  Identities=22%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             cCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCC
Q 040468          464 LTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLS  521 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~  521 (543)
                      +++|+.|+|++|+++ .+|..   +++|++|+|++|+++ .+|+.   ..+|+.|.+.
T Consensus       303 ~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         303 PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            457788888888887 56643   457888888888877 55543   3356776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-20  Score=188.17  Aligned_cols=334  Identities=17%  Similarity=0.113  Sum_probs=161.8

Q ss_pred             ceeEEEeeCCCCCCC-cchhccCCCCCCEEeccCCcccccCChh---hhhcCCCCcEEEccCCccccc----CCCCCc-C
Q 040468           22 QLTSISLSGYIDGGT-FPKFLYHQHDLKNANLSHLNLSGEFPNW---LVENNTNLETLLLANNSLFGS----FRMPIH-S   92 (543)
Q Consensus        22 ~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~----~~~~~~-~   92 (543)
                      +|++||++++++++. +.+.+..++++++|+|++|.+++.....   .+..+++|++|+|++|.+++.    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            688899988888864 3344567788888888888876432222   236778888888888877532    222232 2


Q ss_pred             CCCCCEEEcCCCccccCCchhh---hcCCCCCcEEEcCCCcCccCCchhh----cC-CCCCCEEecccccccccCc---h
Q 040468           93 HQKLATLDVSNNFFQGHIPVEI---GTYLPGLMEFNLSRNAFNGSIPSSF----AD-MQMLARLDISYNQLTGEIP---E  161 (543)
Q Consensus        93 ~~~L~~L~ls~~~i~~~~~~~~---~~~l~~L~~L~L~~~~i~~~~~~~l----~~-l~~L~~L~L~~~~~~~~~~---~  161 (543)
                      ..+|++|++++|.+++.....+   ...+++|++|++++|.+.......+    .. ...................   .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            3468888888887764322222   2236778888888887653221111    11 1123333333332221110   1


Q ss_pred             HhhhCCCCCCEEEccCCcCCCcCcc----cc-cCCCCcCEEeCCCCccCcc----CchhhhcCCCCCEEEccCCcCCC--
Q 040468          162 RMATGCFSLEILALSNNSLQGHIFS----KK-FSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLSG--  230 (543)
Q Consensus       162 ~~~~~~~~L~~L~l~~n~~~~~~~~----~l-~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~--  230 (543)
                      ........++.+.++++........    .+ ........+.+..+.....    ....+...+.++.+.+.++.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            1112245566666665543321100    01 1122344455544443311    11122334555555555554321  


Q ss_pred             ---cccccccCCCCCcEEEccCCcccccC----cccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCcccccc
Q 040468          231 ---EIPRWLGNLSFLVDIIMPNNNLEGLI----PIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRL  303 (543)
Q Consensus       231 ---~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  303 (543)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.+.......                  ..
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~------------------l~  304 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL------------------LC  304 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH------------------HH
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch------------------hh
Confidence               11112223444555555555443211    112223344444444444432110000                  00


Q ss_pred             CCCCCCCCCccEEEccccccccccCc----cCCCCCCCCEEEccCcccccccc----hhhh-CCCCCCEEeCCCCcccc
Q 040468          304 ESVIPDSPNLVTLDLSYNCLHGSIPN----RIDRLPQLSYLLLANNYIEGEIP----VQLC-QLKEVQLIDLSHNNLSG  373 (543)
Q Consensus       304 ~~~~~~~~~L~~L~l~~~~i~~~~~~----~l~~~~~L~~L~l~~n~i~~~~~----~~l~-~l~~L~~L~l~~n~~~~  373 (543)
                      .........|+.++++++.++.....    .+..+++|+.|++++|++++...    ..+. ..+.|++|++++|.++.
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            00112234666777776666543222    23345567777777777654322    2222 34567777777777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=145.83  Aligned_cols=199  Identities=17%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCC-CcCccCCchhhcCCCCCCEEe
Q 040468           71 NLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSR-NAFNGSIPSSFADMQMLARLD  149 (543)
Q Consensus        71 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~-~~i~~~~~~~l~~l~~L~~L~  149 (543)
                      ++++|+++++++....+.+|.++++|++|++++|.+...++...+..++.++++.+.. +.+....+..+.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4444555554444333334444555555555544443233333333344445444432 233333334444555555555


Q ss_pred             cccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCC-CCcCEEeCCCCccCccCchhhhcCCCCCEE-EccCCc
Q 040468          150 ISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSL-TNLMTLQLDGNNFSGEIPESLSKCRRLGGL-YLSDNH  227 (543)
Q Consensus       150 L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~  227 (543)
                      ++++.+....+......++.+..+...++.+.......+..+ ..++.+++.+++++...+..+ ..++++.+ .+.+|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccc
Confidence            555544411111111122223333333333333322333332 244455555555443222222 22333333 234444


Q ss_pred             CCCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEE
Q 040468          228 LSGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILD  270 (543)
Q Consensus       228 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  270 (543)
                      +....+..|..+++|+.|++++|.++...+..+..+++|+.++
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            4433333445555555555555555544333444444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=9.2e-16  Score=138.08  Aligned_cols=185  Identities=18%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             CCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEc
Q 040468          168 FSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIM  247 (543)
Q Consensus       168 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  247 (543)
                      .+|++|++.+|.+.+.  ..+..+++|++|++++|.+....  .+..+++++++++++|.+...  ..+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            3444444444444422  22444555555555555444221  144555555555555544421  22455556666666


Q ss_pred             cCCcccccCcccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEcccccccccc
Q 040468          248 PNNNLEGLIPIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSI  327 (543)
Q Consensus       248 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  327 (543)
                      +++...+.  ..+...+.+..+.++++.+... ..+...++|+.|++.+|.+.+..  .+.++++|++|++++|++++. 
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred             cccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccch--hhcccccceecccCCCccCCC-
Confidence            55554432  2234455566666666555422 22333566777777777665432  366778888999988888743 


Q ss_pred             CccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCC
Q 040468          328 PNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLS  367 (543)
Q Consensus       328 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  367 (543)
                      + .++.+++|+.|++++|++++ ++. +.++++|++|+++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEee
Confidence            2 37788889999999998884 332 7788899998886

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.2e-15  Score=137.33  Aligned_cols=186  Identities=23%  Similarity=0.316  Sum_probs=76.3

Q ss_pred             CCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEE
Q 040468           69 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARL  148 (543)
Q Consensus        69 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L  148 (543)
                      +.+|++|++.+|++.+.  .++..+++|++|++++|.+. .+.. + ..+++++++++++|.++. + ..+.++++|+++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~-l-~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-L-KNLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc-c-cccccccccccccccccc-c-cccccccccccc
Confidence            34444444444444322  22444444444444444443 1111 1 124444444444444431 1 233444444444


Q ss_pred             ecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcC
Q 040468          149 DISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHL  228 (543)
Q Consensus       149 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  228 (543)
                      +++++... ....  +...+.++.+.++++.+...  ..+..+++|+.|++.++.+...  ..+.++++|+.|++++|.+
T Consensus       113 ~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccc-ccch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            44444333 1111  11233444444444433321  1233344444444444444322  1234445555555555544


Q ss_pred             CCcccccccCCCCCcEEEccCCcccccCcccccCCCCCcEEEcc
Q 040468          229 SGEIPRWLGNLSFLVDIIMPNNNLEGLIPIEFCQLRFLRILDLS  272 (543)
Q Consensus       229 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  272 (543)
                      ... + .+..+++|+.|++++|.+++..  .+..+++|+.|+++
T Consensus       186 ~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         186 SDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             CCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            421 1 2444555555555555554332  24455555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.9e-16  Score=136.62  Aligned_cols=161  Identities=27%  Similarity=0.360  Sum_probs=118.3

Q ss_pred             cccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEe
Q 040468          286 PAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLID  365 (543)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  365 (543)
                      +++++.|++.++.++..  ..++.+++|++|++++|++++..  .+..+++|+.|++++|.+.. ++ .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccccc
Confidence            45666777777766543  23566788888888888887543  27888888888888888763 33 377888889998


Q ss_pred             CCCCcccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCc
Q 040468          366 LSHNNLSGHIPPCLVNTSLSEGHDEPVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKE  445 (543)
Q Consensus       366 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (543)
                      +++|..... + .+.                                                                 
T Consensus       113 l~~~~~~~~-~-~~~-----------------------------------------------------------------  125 (199)
T d2omxa2         113 LFNNQITDI-D-PLK-----------------------------------------------------------------  125 (199)
T ss_dssp             CCSSCCCCC-G-GGT-----------------------------------------------------------------
T ss_pred             ccccccccc-c-ccc-----------------------------------------------------------------
Confidence            888876421 0 010                                                                 


Q ss_pred             cceeeeccCCcccccccccCceeEEEcccCccccccChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcC
Q 040468          446 ETIQFTTKNMSYYYQGRILTSMFGIDLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  525 (543)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i  525 (543)
                                       .+++|+.|++++|++. .+ +.+..+++|++|++++|.+++..  .+.++++|+.|++++|++
T Consensus       126 -----------------~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         126 -----------------NLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             -----------------TCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             -----------------hhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCC
Confidence                             0568889999999887 34 45888899999999999988543  488899999999999998


Q ss_pred             cccCCccccccCcCCcC
Q 040468          526 HGKIPSQLTVLTTLAVF  542 (543)
Q Consensus       526 ~~~~~~~~~~l~~L~~l  542 (543)
                      +. ++ .+..+++|+.|
T Consensus       185 ~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC-CG-GGGGCTTCSEE
T ss_pred             CC-Cc-cccCCCCCCcC
Confidence            74 43 47788888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=148.80  Aligned_cols=224  Identities=17%  Similarity=0.176  Sum_probs=129.7

Q ss_pred             CEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcC
Q 040468           48 KNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLS  127 (543)
Q Consensus        48 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~  127 (543)
                      +++|+++..+.......++.  ..+..+.+.+..+... ........+|++|++++|.+.......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35667666554333333322  2345566655544222 22233455778888887776644445556667788888888


Q ss_pred             CCcCccCCchhhcCCCCCCEEecccc-cccccCchHhhhCCCCCCEEEccCCc-CCCcC-ccccc-CCCCcCEEeCCCCc
Q 040468          128 RNAFNGSIPSSFADMQMLARLDISYN-QLTGEIPERMATGCFSLEILALSNNS-LQGHI-FSKKF-SLTNLMTLQLDGNN  203 (543)
Q Consensus       128 ~~~i~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~l~-~l~~L~~L~l~~~~  203 (543)
                      +|.+++..+..+.++++|++|+++++ .+++.....+...+++|++|++++|. +++.. ...+. ..++|+.|++.++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            87776656666777778888888775 34322223344557778888887763 33211 11122 24667777777642


Q ss_pred             --cCcc-CchhhhcCCCCCEEEccCCc-CCCcccccccCCCCCcEEEccCC-cccccCcccccCCCCCcEEEccCC
Q 040468          204 --FSGE-IPESLSKCRRLGGLYLSDNH-LSGEIPRWLGNLSFLVDIIMPNN-NLEGLIPIEFCQLRFLRILDLSNN  274 (543)
Q Consensus       204 --~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~  274 (543)
                        ++.. +...+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|+.|++.++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2221 12223456777777777653 44445555666777777777775 344444445566667777776665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=7.5e-16  Score=136.60  Aligned_cols=101  Identities=21%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             CCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEcc
Q 040468          264 RFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLA  343 (543)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~  343 (543)
                      .+|+.|+++++.+.. ......+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++.
T Consensus        46 ~~L~~L~l~~~~i~~-l~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCC-chhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            345555555555442 222222444555555555444322  12344445555555544442 22 24444445555554


Q ss_pred             CcccccccchhhhCCCCCCEEeCCCCcc
Q 040468          344 NNYIEGEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       344 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      +|.+.. + ..+..+++++.+++++|.+
T Consensus       121 ~~~~~~-~-~~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         121 HNGISD-I-NGLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCC
T ss_pred             cccccc-c-ccccccccccccccccccc
Confidence            444431 1 1234444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.1e-16  Score=140.43  Aligned_cols=219  Identities=18%  Similarity=0.155  Sum_probs=117.0

Q ss_pred             CEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEcc
Q 040468           97 ATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALS  176 (543)
Q Consensus        97 ~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  176 (543)
                      +.++.++..++ .+|..+.   +++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45566655555 5565443   3566666666666643344566666666666666665544444445555555555544


Q ss_pred             C-CcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCCCcccccccCCCCCcEEEccCCccccc
Q 040468          177 N-NSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLSGEIPRWLGNLSFLVDIIMPNNNLEGL  255 (543)
Q Consensus       177 ~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  255 (543)
                      . +.+....+..+..+++|+.+++.++.+....+  +..+                     ..+..+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~---------------------~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKI---------------------HSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTT---------------------CBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--cccc---------------------ccccccccccccccccccc
Confidence            3 33433333444445555555555544432111  1111                     1122222223333333333


Q ss_pred             CcccccCC-CCCcEEEccCCcCccCCCCCCCcccccEE-EcCCCccccccCCCCCCCCCccEEEccccccccccCccCCC
Q 040468          256 IPIEFCQL-RFLRILDLSNNTIFGTLPSCFSPAYIEQV-HLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGSIPNRIDR  333 (543)
Q Consensus       256 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~  333 (543)
                      .+..+..+ ..++.+++.++.+.......+...+++++ .+.+|.++......|.++++|++|++++|+++...+..+..
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            23333333 25666677766666555555555555544 45666777666666788888888888888888544445666


Q ss_pred             CCCCCEEEc
Q 040468          334 LPQLSYLLL  342 (543)
Q Consensus       334 ~~~L~~L~l  342 (543)
                      +++|+.+++
T Consensus       224 l~~L~~l~~  232 (242)
T d1xwdc1         224 LKKLRARST  232 (242)
T ss_dssp             CCEEESSSE
T ss_pred             CcccccCcC
Confidence            555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-16  Score=146.45  Aligned_cols=180  Identities=19%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             CCCcEEEccCCccccc-CCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCC-cCccC-CchhhcCCCCCC
Q 040468           70 TNLETLLLANNSLFGS-FRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRN-AFNGS-IPSSFADMQMLA  146 (543)
Q Consensus        70 ~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~-~i~~~-~~~~l~~l~~L~  146 (543)
                      .+|++|+++++.+... +...+..+++|++|++++|.+.+..+..+.+ +++|++|++++| .++.. +...+.++++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhcc
Confidence            3444455544443221 1222344444555555444444333333333 444555555443 22211 111123344455


Q ss_pred             EEeccccc-cccc-CchHhhhCCCCCCEEEccCCc--CCCcCcc-cccCCCCcCEEeCCCCc-cCccCchhhhcCCCCCE
Q 040468          147 RLDISYNQ-LTGE-IPERMATGCFSLEILALSNNS--LQGHIFS-KKFSLTNLMTLQLDGNN-FSGEIPESLSKCRRLGG  220 (543)
Q Consensus       147 ~L~L~~~~-~~~~-~~~~~~~~~~~L~~L~l~~n~--~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~  220 (543)
                      +|+++++. +++. +...+...+++|+.|+++++.  ++..... ....+++|++|+++++. +++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            55554432 1111 111122223445555554431  2211111 11234555555555432 33333344455555555


Q ss_pred             EEccCC-cCCCcccccccCCCCCcEEEccCC
Q 040468          221 LYLSDN-HLSGEIPRWLGNLSFLVDIIMPNN  250 (543)
Q Consensus       221 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~  250 (543)
                      |++++| .+++.....++.+++|+.|++.+|
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555553 233333344555566666666555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=6.6e-15  Score=129.25  Aligned_cols=159  Identities=24%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             CCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEe
Q 040468           70 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLD  149 (543)
Q Consensus        70 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~  149 (543)
                      .++++|+++++++...  .++..+++|++|++++|.++ .++. +.. +++|++|++++|.+.. + ..+.+++.|+.|+
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIAD-I-TPLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-ccC-Cccccccccccccccc-c-ccccccccccccc
Confidence            3444444444443221  12344444444444444443 2221 222 4444444444444331 1 1234444444444


Q ss_pred             cccccccccCchHhhhCCCCCCEEEccCCcCCCcCcccccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccCCcCC
Q 040468          150 ISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFSKKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       150 L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  229 (543)
                      ++++... ..+ . +..+++|+.+++++|++...  ..+..+++++.|++.+|.+++.  ..+.++++|++|++++|+++
T Consensus       113 l~~~~~~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQIT-DID-P-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCC-CCG-G-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-c-cchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            4444433 111 1 22244444444444444321  2234444455555554444422  12444555555555555544


Q ss_pred             CcccccccCCCCCcE
Q 040468          230 GEIPRWLGNLSFLVD  244 (543)
Q Consensus       230 ~~~~~~l~~~~~L~~  244 (543)
                      +. + .+..+++|++
T Consensus       186 ~i-~-~l~~L~~L~~  198 (199)
T d2omxa2         186 DI-S-VLAKLTNLES  198 (199)
T ss_dssp             CC-G-GGGGCTTCSE
T ss_pred             CC-c-cccCCCCCCc
Confidence            21 1 2444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=9.8e-15  Score=129.26  Aligned_cols=180  Identities=18%  Similarity=0.243  Sum_probs=128.2

Q ss_pred             EeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCcc
Q 040468           27 SLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFF  106 (543)
Q Consensus        27 ~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i  106 (543)
                      .+....+++..+.  ..+.+|++|+++++.++ .++.  +..+++|++|++++|++++..+  ++.+++|++|++++|.+
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCccc--cccCccccccccccccc
Confidence            4444455543332  34567888888888876 3333  4678888888888888765443  67788888888888888


Q ss_pred             ccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccccCchHhhhCCCCCCEEEccCCcCCCcCcc
Q 040468          107 QGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTGEIPERMATGCFSLEILALSNNSLQGHIFS  186 (543)
Q Consensus       107 ~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  186 (543)
                      + .++ .+.. +++|+.|++++|.+..  ...+..++.++.++++++.+. ..+  ....+++|+++++++|.+.+.  .
T Consensus       103 ~-~l~-~l~~-l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~-~~~--~~~~l~~L~~l~l~~n~l~~i--~  172 (210)
T d1h6ta2         103 K-DLS-SLKD-LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISDI--V  172 (210)
T ss_dssp             C-CGG-GGTT-CTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCC--G
T ss_pred             c-ccc-cccc-cccccccccccccccc--ccccccccccccccccccccc-ccc--ccccccccccccccccccccc--c
Confidence            7 555 3333 7888888888887762  346777888888888888876 332  234478888888888887753  2


Q ss_pred             cccCCCCcCEEeCCCCccCccCchhhhcCCCCCEEEccC
Q 040468          187 KKFSLTNLMTLQLDGNNFSGEIPESLSKCRRLGGLYLSD  225 (543)
Q Consensus       187 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  225 (543)
                      .+..+++|+.|++++|.++. ++ .+.++++|++|++++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            47788888888888888874 33 478888888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=2.1e-15  Score=131.68  Aligned_cols=85  Identities=24%  Similarity=0.343  Sum_probs=39.0

Q ss_pred             cccEEEcCCCcccc-ccCCCCCCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeC
Q 040468          288 YIEQVHLSKNKIEG-RLESVIPDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDL  366 (543)
Q Consensus       288 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  366 (543)
                      .+++|++++|+++. .....|..+++|++|++++|.+....+..+..+++|+.|++++|++....+..|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            34444444444432 22333444444555555444444444444444444555555555444333444444555555555


Q ss_pred             CCCccc
Q 040468          367 SHNNLS  372 (543)
Q Consensus       367 ~~n~~~  372 (543)
                      ++|.+.
T Consensus       110 ~~N~l~  115 (192)
T d1w8aa_         110 YDNQIS  115 (192)
T ss_dssp             CSSCCC
T ss_pred             CCcccc
Confidence            555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.3e-15  Score=133.10  Aligned_cols=130  Identities=20%  Similarity=0.216  Sum_probs=91.5

Q ss_pred             eEEEeeCCCCCCCcchhccCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           24 TSISLSGYIDGGTFPKFLYHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        24 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      +.++.++.+++ .+|..+  .+++++|+|++|.++..++...|.++++|++|+++++++....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45667777766 455443  257777777777776555555567777777777777777777777777777777777777


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCCEEecccccccc
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLARLDISYNQLTG  157 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~  157 (543)
                      |++. .++...+..+++|++|+|++|+++...+..|..+++|++|++++|.+..
T Consensus        88 N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            7777 6666666567777777777777776666667777777777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.1e-14  Score=119.79  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             CCCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCccc
Q 040468          308 PDSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       308 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                      .+..++++|++++|+|+ .++..+..+++|+.|++++|++.. ++ .+..+++|++|++++|.+.
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc
Confidence            34456666777777666 334445556666677777666663 32 3566666666666666664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=7e-15  Score=141.22  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             ccccCCCCcCEEeCCCCccCccC----chhhhcCCCCCEEEccCCcCCCc----------ccccccCCCCCcEEEccCCc
Q 040468          186 SKKFSLTNLMTLQLDGNNFSGEI----PESLSKCRRLGGLYLSDNHLSGE----------IPRWLGNLSFLVDIIMPNNN  251 (543)
Q Consensus       186 ~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~~~  251 (543)
                      ..+.....++.|++++|.+....    ...+...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            33445667777777777665332    22344556777777766543311          11223445566666666665


Q ss_pred             ccccC----cccccCCCCCcEEEccCCcCccCCCCCCCcccccEEEcCCCccccccCCCCCCCCCccEEEccccccccc-
Q 040468          252 LEGLI----PIEFCQLRFLRILDLSNNTIFGTLPSCFSPAYIEQVHLSKNKIEGRLESVIPDSPNLVTLDLSYNCLHGS-  326 (543)
Q Consensus       252 ~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-  326 (543)
                      +....    ...+...++|+.|++++|.+.......+ ...+..+.         ........+.|+.+++++|.+... 
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~---------~~~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-ARALQELA---------VNKKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-HHHHHHHH---------HHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cccccccchhhhhcccccchheecccccccccccccc-cccccccc---------cccccccCcccceeecccccccccc
Confidence            54321    1223344556666665554431100000 00000000         000012345667777777666532 


Q ss_pred             ---cCccCCCCCCCCEEEccCcccccc-----cchhhhCCCCCCEEeCCCCccc
Q 040468          327 ---IPNRIDRLPQLSYLLLANNYIEGE-----IPVQLCQLKEVQLIDLSHNNLS  372 (543)
Q Consensus       327 ---~~~~l~~~~~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~~~  372 (543)
                         +...+..++.|+.|++++|.++..     +...+..+++|+.|++++|.+.
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence               223344566677777777776532     2233556677777777777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=110.46  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=26.8

Q ss_pred             EEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468          315 TLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       315 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      +|++++|+++ .++ .++.+++|++|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i   55 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL   55 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccc
Confidence            4555555554 222 2445555555555555554 3344445555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=114.61  Aligned_cols=127  Identities=19%  Similarity=0.169  Sum_probs=74.9

Q ss_pred             cCCCCCCEEeccCCcccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCC
Q 040468           42 YHQHDLKNANLSHLNLSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGL  121 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L  121 (543)
                      .++.++++|+|++|+++ .++. ++..+++|++|++++|.+...  ..+..+++|++|++++|.++ .++..++..+++|
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence            34556666777776665 4443 345566677777777766443  23666677777777777766 5555544446677


Q ss_pred             cEEEcCCCcCccCC-chhhcCCCCCCEEecccccccccCch---HhhhCCCCCCEEE
Q 040468          122 MEFNLSRNAFNGSI-PSSFADMQMLARLDISYNQLTGEIPE---RMATGCFSLEILA  174 (543)
Q Consensus       122 ~~L~L~~~~i~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~  174 (543)
                      ++|++++|.+.... ...+..+++|++|++++|.+. ..+.   .++..+|+|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            77777777665321 134566667777777776665 3332   2333456666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=1.8e-13  Score=131.25  Aligned_cols=192  Identities=18%  Similarity=0.172  Sum_probs=95.4

Q ss_pred             chhccCCCCCCEEeccCCcccccCChhh---hhcCCCCcEEEccCCccccc----------CCCCCcCCCCCCEEEcCCC
Q 040468           38 PKFLYHQHDLKNANLSHLNLSGEFPNWL---VENNTNLETLLLANNSLFGS----------FRMPIHSHQKLATLDVSNN  104 (543)
Q Consensus        38 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~----------~~~~~~~~~~L~~L~ls~~  104 (543)
                      ...+.....++.|+|++|.+..+....+   +...++|+.++++++.....          +..++..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3445566777777777776654332222   23456777777776543211          1122445667777777777


Q ss_pred             ccccCCchhhh---cCCCCCcEEEcCCCcCccCCchh-------------hcCCCCCCEEecccccccccCchH---hhh
Q 040468          105 FFQGHIPVEIG---TYLPGLMEFNLSRNAFNGSIPSS-------------FADMQMLARLDISYNQLTGEIPER---MAT  165 (543)
Q Consensus       105 ~i~~~~~~~~~---~~l~~L~~L~L~~~~i~~~~~~~-------------l~~l~~L~~L~L~~~~~~~~~~~~---~~~  165 (543)
                      .+.......+.   ..+++|++|++++|.+.......             ....+.|+.+.++++.+.......   ...
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            66533222221   12566777777776654111111             123345666666665554221111   122


Q ss_pred             CCCCCCEEEccCCcCCCc-----CcccccCCCCcCEEeCCCCccCcc----CchhhhcCCCCCEEEccCCcCC
Q 040468          166 GCFSLEILALSNNSLQGH-----IFSKKFSLTNLMTLQLDGNNFSGE----IPESLSKCRRLGGLYLSDNHLS  229 (543)
Q Consensus       166 ~~~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~  229 (543)
                      ..+++++|++++|.+...     ....+...++|+.|++++|.++..    +...+..+++|++|++++|.+.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            345566666666655421     122234455566666655554322    1233345555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.7e-12  Score=103.49  Aligned_cols=86  Identities=23%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             hcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCC-chhhcCCCCC
Q 040468           67 ENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSI-PSSFADMQML  145 (543)
Q Consensus        67 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~-~~~l~~l~~L  145 (543)
                      ..+++|++|++++|++. .+|..+..+++|++|++++|.++ .++ .+.. +++|++|++++|+++... ...+..+++|
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccc-ccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            34444444444444442 22333444444444444444444 232 1222 444444444444444211 1234444444


Q ss_pred             CEEeccccccc
Q 040468          146 ARLDISYNQLT  156 (543)
Q Consensus       146 ~~L~L~~~~~~  156 (543)
                      ++|++++|.+.
T Consensus        93 ~~L~l~~N~i~  103 (124)
T d1dcea3          93 VLLNLQGNSLC  103 (124)
T ss_dssp             CEEECTTSGGG
T ss_pred             CEEECCCCcCC
Confidence            44444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=4.2e-14  Score=123.35  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             CCCCccEEEccccccccccCccCCCCCCCCEEEccCcccccccchhhhCCCCCCEEeCCCCcc
Q 040468          309 DSPNLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNYIEGEIPVQLCQLKEVQLIDLSHNNL  371 (543)
Q Consensus       309 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  371 (543)
                      .+++|++|++++|+++. ++ .+..+++|+.|++++|+++ .++..+..+++|+.|++++|.+
T Consensus        46 ~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i  105 (198)
T d1m9la_          46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEEC
T ss_pred             cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccc
Confidence            34455555555555442 21 2444455555555555544 2333333334455555555444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.1e-11  Score=100.39  Aligned_cols=142  Identities=14%  Similarity=0.062  Sum_probs=85.3

Q ss_pred             CccEEEccccccccccCccCCCCCCCCEEEccCcc-cccccchhhhCCCCCCEEeCCCCcccccCCCCcccCCCCCCCCC
Q 040468          312 NLVTLDLSYNCLHGSIPNRIDRLPQLSYLLLANNY-IEGEIPVQLCQLKEVQLIDLSHNNLSGHIPPCLVNTSLSEGHDE  390 (543)
Q Consensus       312 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  390 (543)
                      ..+.++.+++.+. ..|..+..+++|+.|++++|+ ++...+..|.++++|+.|++++|.+....+..|..         
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~---------   78 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF---------   78 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS---------
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccc---------
Confidence            3445666666666 456666667777777776553 66444566777777777777777775433333332         


Q ss_pred             CCCCCCCCCCCCCCccccccccccCCccCCCCCCCCCCcccccccCCCCCCCCCccceeeeccCCcccccccccCceeEE
Q 040468          391 PVAPTSSSCGRASGYASSYTKTALNATTPFSSSCGRGYPYALDYVGSRTPPMGKEETIQFTTKNMSYYYQGRILTSMFGI  470 (543)
Q Consensus       391 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  470 (543)
                                                                                               +++|++|
T Consensus        79 -------------------------------------------------------------------------l~~L~~L   85 (156)
T d2ifga3          79 -------------------------------------------------------------------------TPRLSRL   85 (156)
T ss_dssp             -------------------------------------------------------------------------CSCCCEE
T ss_pred             -------------------------------------------------------------------------cccccce
Confidence                                                                                     4577777


Q ss_pred             EcccCccccccChhhhcccccCeeeCcCCcccc-ccChhhhccCCCCeeeCCCCcCcccCCccccccC
Q 040468          471 DLSCNKLTGEIPTQIGYLTKIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPSQLTVLT  537 (543)
Q Consensus       471 ~ls~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~  537 (543)
                      +|++|+++ .+|.......+|+.|+|++|++.. ....++..........+..+.+.+..|..+..++
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             eccCCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            77777777 555443334467788888887752 2223333333334444555666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2.4e-12  Score=112.02  Aligned_cols=107  Identities=22%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             hcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCccCCchhhcCCCCCC
Q 040468           67 ENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFNGSIPSSFADMQMLA  146 (543)
Q Consensus        67 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~  146 (543)
                      ..+++|++|++++|++...  .++..+++|++|++++|.++ .++..... +++|++|++++|.++. + ..+.++++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~-l-~~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-L-SGIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCC-H-HHHHHHHHSS
T ss_pred             hcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccccccc-cccccccccccccccc-c-cccccccccc
Confidence            5556666666666655432  23555666666666666655 44432222 3456666666666552 1 3455556666


Q ss_pred             EEecccccccccCch-HhhhCCCCCCEEEccCCcC
Q 040468          147 RLDISYNQLTGEIPE-RMATGCFSLEILALSNNSL  180 (543)
Q Consensus       147 ~L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~  180 (543)
                      +|++++|.+. .++. ..+..+++|+.|++++|.+
T Consensus       119 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhc-cccccccccCCCccceeecCCCcc
Confidence            6666666655 3322 2334456666666666544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.5e-10  Score=94.71  Aligned_cols=103  Identities=16%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             EEEeeCCCCCCCcchhccCCCCCCEEeccCCc-ccccCChhhhhcCCCCcEEEccCCcccccCCCCCcCCCCCCEEEcCC
Q 040468           25 SISLSGYIDGGTFPKFLYHQHDLKNANLSHLN-LSGEFPNWLVENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVSN  103 (543)
Q Consensus        25 ~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~  103 (543)
                      .++.++.++. ..|..+..+++|++|++++++ ++ .++...|.++++|+.|++++|++....+.+|..+++|++|+|++
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3455555544 334445555666666665443 43 44444445566666666666666555555566666666666666


Q ss_pred             CccccCCchhhhcCCCCCcEEEcCCCcC
Q 040468          104 NFFQGHIPVEIGTYLPGLMEFNLSRNAF  131 (543)
Q Consensus       104 ~~i~~~~~~~~~~~l~~L~~L~L~~~~i  131 (543)
                      |+++ .++..++. ..+|++|++++|++
T Consensus        90 N~l~-~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALE-SLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCS-CCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCCc-ccChhhhc-cccccccccCCCcc
Confidence            6655 55555554 23455666655554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=9.1e-08  Score=79.48  Aligned_cols=80  Identities=20%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             cCceeEEEcccCcccccc--ChhhhcccccCeeeCcCCccccccChhhhccCCCCeeeCCCCcCcccCCc-------ccc
Q 040468          464 LTSMFGIDLSCNKLTGEI--PTQIGYLTKIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPS-------QLT  534 (543)
Q Consensus       464 ~~~L~~L~ls~n~l~~~~--~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-------~~~  534 (543)
                      +++|++|+|++|+++...  +..++.+++|+.|++++|.|+...+-......+|+.|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            789999999999999432  35578899999999999999955443444456899999999999865442       255


Q ss_pred             ccCcCCcCC
Q 040468          535 VLTTLAVFR  543 (543)
Q Consensus       535 ~l~~L~~l~  543 (543)
                      .+++|+.|+
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7.5e-08  Score=79.99  Aligned_cols=66  Identities=24%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             hhcCCCCcEEEccCCcccccC--CCCCcCCCCCCEEEcCCCccccCCchhhhcCCCCCcEEEcCCCcCc
Q 040468           66 VENNTNLETLLLANNSLFGSF--RMPIHSHQKLATLDVSNNFFQGHIPVEIGTYLPGLMEFNLSRNAFN  132 (543)
Q Consensus        66 ~~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~~l~~L~~L~L~~~~i~  132 (543)
                      +..+++|++|++++|+++...  +..+..+++|++|++++|.++ .++....-...+|++|++++|++.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            345666666666666664332  233445666666666666665 333321111335666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=8.5e-06  Score=67.53  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=26.9

Q ss_pred             ceeEEEcccCccccccC----hhhhcccccCeeeCcCCccccc-------cChhhhccCCCCeeeCCCCc
Q 040468          466 SMFGIDLSCNKLTGEIP----TQIGYLTKIHALNLSHNNLTGT-------IPTTFSNLKQIESLDLSYNL  524 (543)
Q Consensus       466 ~L~~L~ls~n~l~~~~~----~~l~~l~~L~~L~ls~n~i~~~-------~~~~~~~l~~L~~L~l~~n~  524 (543)
                      +|++|+|++|.+.....    ..+...++|++|+|++|.+...       +.+.+..-++|+.|+++.+.
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            44444555444443221    2334445555555555543311       23334444556666655543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=1.1e-05  Score=66.92  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=17.0

Q ss_pred             CCCCcEEEccCCcccccCC----CCCcCCCCCCEEEcCCCccc
Q 040468           69 NTNLETLLLANNSLFGSFR----MPIHSHQKLATLDVSNNFFQ  107 (543)
Q Consensus        69 l~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~ls~~~i~  107 (543)
                      .+.|++|++++|.+.+...    ..+...+.|++|++++|.+.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3445555555554432211    12233444555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=0.00013  Score=60.14  Aligned_cols=17  Identities=0%  Similarity=0.059  Sum_probs=8.3

Q ss_pred             cCCCCCCEEEcCCCccc
Q 040468           91 HSHQKLATLDVSNNFFQ  107 (543)
Q Consensus        91 ~~~~~L~~L~ls~~~i~  107 (543)
                      ...++|++|++++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCSCCEEECTTSCCC
T ss_pred             hcCCccCeeeccCCccc
Confidence            34445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00022  Score=58.55  Aligned_cols=111  Identities=15%  Similarity=0.272  Sum_probs=49.2

Q ss_pred             CCCCCCEEeccCC-cccccCChhh---hhcCCCCcEEEccCCccccc----CCCCCcCCCCCCEEEcCCCccccCCchhh
Q 040468           43 HQHDLKNANLSHL-NLSGEFPNWL---VENNTNLETLLLANNSLFGS----FRMPIHSHQKLATLDVSNNFFQGHIPVEI  114 (543)
Q Consensus        43 ~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~ls~~~i~~~~~~~~  114 (543)
                      +.++|++|+++++ .++......+   +...++|++|++++|.+...    +...+...+.++.+++++|.+.......+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666553 3432222211   13445566666666655322    12223445556666666655543222222


Q ss_pred             h---cCCCCCcEEEcC--CCcCcc----CCchhhcCCCCCCEEecccc
Q 040468          115 G---TYLPGLMEFNLS--RNAFNG----SIPSSFADMQMLARLDISYN  153 (543)
Q Consensus       115 ~---~~l~~L~~L~L~--~~~i~~----~~~~~l~~l~~L~~L~L~~~  153 (543)
                      .   ...+.|+.++|.  +|.+..    .+.+.+...+.|++|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1   113455554443  333331    12233444555566655544