Citrus Sinensis ID: 040474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE
Secondary Structure (PSIPRED)
cccccccccEEEcccccccccHHHHHHccccEEEEcccccccccccccHHHHHHHHHHccccEEEEEEcccccccHHHccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccEEEEccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccccccEEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccEEEccccccHHHHHHHHHcccEEEEEEcccccHHHccccHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccccEEEEEEEccEEEEccccccccccccccEcEEEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtynfirpdlivgsclqtpedvDKLRQIGVKTIfclqqdpdleyfgvDIIAIQEYAKTYDDIQHIRAEIrdfdafdlrMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLlskrpcfpkldaIKSATADILTGLRKELVTFswkgknctsveisgidigwgqrmpltfdkEQGLWILkrelpegryeykYIVDGewtcnkyelvsspnkdghvnnyvqvddapssVSEALRNrltsddfdltKDELHKIRAFLEACPDYE
Flexible Loop (DISEMBL)
mtynfirpdlivgscLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVtfswkgknctsveisgidigwgqrmpltFDKEQGLWILkrelpegrYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRltsddfdltkdELHKIRAFLEACPDYE
Low Complexity Region (SEG)
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE
Disordered region (IsUnstruct)
**YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSS******VNNYV***************************ELHKIRAFLE******
Disordered Region (DISOPRED)
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCT**EISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSS***********************************
Disordered Region (DISEMBL)
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE
Disordered Region (DISPRO)
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9FEB5	379	Phosphoglucan phosphatase	yes	no	1.0	0.746	0.724	1e-122
Q9SRK5	282	Phosphoglucan phosphatase	no	no	0.537	0.539	0.480	3e-34
F4J117	591	Phosphoglucan phosphatase	no	no	0.840	0.402	0.301	5e-25
Q9WUA5	330	Laforin OS=Mus musculus G	yes	no	0.537	0.460	0.274	8e-08
Q1M199	331	Laforin OS=Canis familiar	yes	no	0.547	0.468	0.265	1e-07
Q91XQ2	327	Laforin (Fragment) OS=Rat	yes	no	0.558	0.483	0.258	3e-07
O95278	331	Laforin OS=Homo sapiens G	yes	no	0.473	0.404	0.271	6e-07
P80386	270	5'-AMP-activated protein	no	no	0.307	0.322	0.358	1e-05
Q9R078	270	5'-AMP-activated protein	no	no	0.307	0.322	0.358	1e-05
Q5BIS9	270	5'-AMP-activated protein	no	no	0.307	0.322	0.369	2e-05

>sp|Q9FEB5|DSP4_ARATH Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis thaliana GN=DSP4 PE=1 SV=1

 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/283 (72%), Positives = 234/283 (82%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI +IQ YAK Y 
Sbjct: 96  MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYS 155

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQHIR EIRDFDAFDLRMRLPAV+  LYKA+ RNGGVTYVHCTAG+GRAPAVAL YMFW
Sbjct: 156 DIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHCTAGMGRAPAVALTYMFW 215

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKL EAH+LL+SKR CFPKLDAI++AT DILTGL+++ VT + K K  + VEISG+D
Sbjct: 216 VQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLD 275

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PLT DK  G WILKRELPEG++EYKYI+DGEWT N+ E    PNKDGH NNY 
Sbjct: 276 IGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA 335

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
           +V D P+SV    R RL+S+D +L ++E  K+  FLE C + E
Sbjct: 336 KVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 378

Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Acts as major regulator of the initial steps of starch degradation at the granule surface. Functions during the day by dephosphorylating the night-accumulated phospho-oligosaccharides. Can release phosphate from both the C6 and the C3 positions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: -

>sp|Q9SRK5|LSF2_ARATH Phosphoglucan phosphatase LSF2, chloroplastic OS=Arabidopsis thaliana GN=LSF2 PE=2 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQ-IGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY 59
           M Y  IR +LIVGS  Q PED+D L+Q   V  I  LQQD D+EY+G+D+ +I    K  
Sbjct: 91  MNYTLIRDELIVGSQPQKPEDIDHLKQEQNVAYILNLQQDKDIEYWGIDLDSIVRRCKEL 150

Query: 60  DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119
             I+H+R   +DFD   LR +LP  +S L  A++   G  YVHC+AGLGRAP V++AYM+
Sbjct: 151 G-IRHMRRPAKDFDPLSLRSQLPKAVSSLEWAVSEGKGRVYVHCSAGLGRAPGVSIAYMY 209

Query: 120 WVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADI 153
           W     LN A+  L+SKRPC P   AI+ AT D+
Sbjct: 210 WFCDMNLNTAYDTLVSKRPCGPNKGAIRGATYDL 243

Starch-associated phosphoglucan phosphatase that can release phosphate from the C3 glucan position. Probably participates to the regulation of starch degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 125/255 (49%), Gaps = 17/255 (6%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M Y+ I   + VGSC+QT EDV+ L + G+  I   Q   + + +G+D  +I +  +   
Sbjct: 290 MRYSKITEQIYVGSCIQTEEDVENLSEAGITAILNFQGGTEAQNWGIDSQSINDACQK-S 348

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           ++  I   I+D D+FDLR +LP  +  L + + +N  V +V CT G  R+ A  +AY+ W
Sbjct: 349 EVLMINYPIKDADSFDLRKKLPLCVGLLLRLLKKNHRV-FVTCTTGFDRSSACVIAYLHW 407

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT--------GLRKELVTFSWKGKNCT 172
           +    L+ A+  +     C P   AI  AT D++         G     VTF W G    
Sbjct: 408 MTDTSLHAAYSFVTGLHACKPDRPAIAWATWDLIAMVDDGKHDGTPTHSVTFVWNGHEGE 467

Query: 173 SVEISGIDIGWGQRMPLTFDKEQG-LWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPN 231
            V + G D     + P+    + G  +  +  L +G+Y YKYI++G+W   ++   S   
Sbjct: 468 EVLLVG-DFTGNWKEPIKATHKGGPRFETEVRLTQGKYYYKYIINGDW---RHSATSPTE 523

Query: 232 KD--GHVNNYVQVDD 244
           +D  G+ NN + V D
Sbjct: 524 RDDRGNTNNIIVVGD 538

Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation. Participates to the regulation of the initial steps of starch degradation at the granule surface. May release a different set of phosphate groups from those removed by DSP4.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q9WUA5|EPM2A_MOUSE Laforin OS=Mus musculus GN=Epm2a PE=1 SV=2

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVD-KLR-QIGVKTIFCLQQDPDL--EYFGVD----IIAI 52
           M Y+ I P++ +GSC +  E V  KL+ ++GV  +   Q + D+     G +     +  
Sbjct: 154 MHYSRILPNIWLGSCPRQLEHVTIKLKHELGVTAVMNFQTEWDIIQNSSGCNRYPEPMTP 213

Query: 53  QEYAKTY--DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRA 110
               K Y  + + +I     D         LP  +  L+ A+  NG   YVHC AG+GR+
Sbjct: 214 DTMMKLYKEEGLSYIWMPTPDMSTEGRVQMLPQAVCLLH-ALLENGHTVYVHCNAGVGRS 272

Query: 111 PAVALAYMFWVLGYKLNEAHQLLLSKRPC-FPKLDAIKSATADI 153
            A    ++ +V+G+ L +    +++KRP  +   DA+  A  D 
Sbjct: 273 TAAVCGWLHYVIGWNLRKVQYFIMAKRPAVYIDEDALAQAQQDF 316

Dual specificity protein phosphatase. May be involved in the control of glycogen metabolism, particularly in monitoring for and preventing the formation of poorly branched glycogen molecules (polyglucosans). Acts as a scaffold protein to facilitate PPP1R3C/PTG ubiquitination by NHLRC1/malin (By similarity). Forms a complex with NHLRC1/malin and HSP70 and this complex suppresses the cellular toxicity of misfolded proteins by promoting their degradation through the ubiquitin-proteasome system (UPS).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q1M199|EPM2A_CANFA Laforin OS=Canis familiaris GN=EPM2A PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 18/173 (10%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVD-KLR-QIGVKTIFCLQQDPDL-----------EYFGV 47
           M Y+ I P++ +GSC +  E +  KL+ ++G+  +   Q + D+           E    
Sbjct: 155 MHYSRILPNIWLGSCPRQVEHITIKLKHELGITAVMNFQTEWDIVQNSSGCNRYPEPMTP 214

Query: 48  DIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGL 107
           D + I+ Y +  + + +I     D         LP  +  L+ A+  NG   YVHC AG+
Sbjct: 215 DTM-IKLYKE--EGLVYIWMPTPDMSTEGRVQMLPQAVCLLH-ALLENGHTVYVHCNAGV 270

Query: 108 GRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC-FPKLDAIKSATADILTGLRK 159
           GR+ A    ++ +V+G+ L +    L++KRP  +   DA+  A  D      K
Sbjct: 271 GRSTAAVCGWLQYVMGWNLRKVQYFLMAKRPAVYIDEDALARAEEDFFQKFGK 323

Dual specificity protein phosphatase. May be involved in the control of glycogen metabolism, particularly in monitoring for and preventing the formation of poorly branched glycogen molecules (polyglucosans). Acts as a scaffold protein to facilitate PPP1R3C/PTG ubiquitination by NHLRC1/malin. Forms a complex with NHLRC1/malin and HSP70 and this complex suppresses the cellular toxicity of misfolded proteins by promoting their degradation through the ubiquitin-proteasome system (UPS).

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q91XQ2|EPM2A_RAT Laforin (Fragment) OS=Rattus norvegicus GN=Epm2a PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVD-KLR-QIGVKTIFCLQQDPDL--EYFGV----DIIAI 52
           M Y+ I P++ +GSC +  E V  KL+ ++G+  +   Q + D+     G     + +  
Sbjct: 151 MHYSRILPNIWLGSCPRQLEHVTIKLKHELGITAVMNFQTEWDIIQNSSGCNRYPEPMTP 210

Query: 53  QEYAKTY--DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRA 110
               K Y  + + +I     D         LP  +  L+ A+  NG   YVHC AG+GR+
Sbjct: 211 DTMMKLYKEEGLAYIWMPTPDMSTEGRVQMLPQAVCLLH-ALLENGHTVYVHCNAGVGRS 269

Query: 111 PAVALAYMFWVLGYKLNEAHQLLLSKRPC-FPKLDAIKSATADILTGLRK 159
            A    ++ +V+G+ L +    +++KRP  +   +A+  A  D      K
Sbjct: 270 TAAVCGWLHYVIGWSLRKVQYFIMAKRPAVYIDEEALAQAQQDFFQKFGK 319

Dual specificity protein phosphatase. May be involved in the control of glycogen metabolism, particularly in monitoring for and preventing the formation of poorly branched glycogen molecules (polyglucosans). Acts as a scaffold protein to facilitate PPP1R3C/PTG ubiquitination by NHLRC1/malin. Forms a complex with NHLRC1/malin and HSP70 and this complex suppresses the cellular toxicity of misfolded proteins by promoting their degradation through the ubiquitin-proteasome system (UPS).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O95278|EPM2A_HUMAN Laforin OS=Homo sapiens GN=EPM2A PE=1 SV=2

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 17/151 (11%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVD-KLR-QIGVKTIFCLQQDPDL-----------EYFGV 47
           M Y+ I P++ +GSC +  E V  KL+ ++G+  +   Q + D+           E    
Sbjct: 155 MHYSRILPNIWLGSCPRQVEHVTIKLKHELGITAVMNFQTEWDIVQNSSGCNRYPEPMTP 214

Query: 48  DIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGL 107
           D + I+ Y +  + + +I     D         LP  +  L+ A+   G + YVHC AG+
Sbjct: 215 DTM-IKLYRE--EGLAYIWMPTPDMSTEGRVQMLPQAVCLLH-ALLEKGHIVYVHCNAGV 270

Query: 108 GRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138
           GR+ A    ++ +V+G+ L +    L++KRP
Sbjct: 271 GRSTAAVCGWLQYVMGWNLRKVQYFLMAKRP 301

Dual specificity protein phosphatase. May be involved in the control of glycogen metabolism, particularly in monitoring for and preventing the formation of poorly branched glycogen molecules (polyglucosans). Acts as a scaffold protein to facilitate PPP1R3C/PTG ubiquitination by NHLRC1/malin. Forms a complex with NHLRC1/malin and HSP70 and this complex suppresses the cellular toxicity of misfolded proteins by promoting their degradation through the ubiquitin-proteasome system (UPS). Isoform 2, an inactive phosphatase, could function as a dominant-negative regulator for the phosphatase activity of isoform 1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
             F W G     V +SG    W  ++PLT  +   + IL  +LPEG ++YK+ VDG+WT 
Sbjct: 80  TVFRWTG-GGKEVYLSGSFNNWS-KLPLTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTH 135

Query: 222 NKYELVSSPNKDGHVNNYVQVDDAPSSVSEAL 253
           +  E + + ++ G VNN +QV      V +AL
Sbjct: 136 DPSEPIVT-SQLGTVNNIIQVKKTDFEVFDAL 166

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
             F W G     V +SG    W  ++PLT  +   + IL  +LPEG ++YK+ VDG+WT 
Sbjct: 80  TVFRWTG-GGKEVYLSGSFNNWS-KLPLTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTH 135

Query: 222 NKYELVSSPNKDGHVNNYVQVDDAPSSVSEAL 253
           +  E + + ++ G VNN +QV      V +AL
Sbjct: 136 DPSEPIVT-SQLGTVNNIIQVKKTDFEVFDAL 166

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
             F W G     V +SG    W  ++PLT      + IL  +LPEG ++YK+ VDG+WT 
Sbjct: 80  TVFRWTG-GGKEVYLSGSFNNWS-KLPLTRSHNNFVAIL--DLPEGEHQYKFFVDGQWTH 135

Query: 222 NKYELVSSPNKDGHVNNYVQVDDAPSSVSEAL 253
           +  E V + ++ G VNN +QV      V +AL
Sbjct: 136 DPSEPVVT-SQLGTVNNVIQVKKTDFEVFDAL 166

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
356535523	371	PREDICTED: uncharacterized protein LOC10	0.992	0.757	0.814	1e-135
255647912	371	unknown [Glycine max]	0.992	0.757	0.811	1e-134
388503936	382	unknown [Lotus japonicus]	0.992	0.735	0.800	1e-133
356576349	371	PREDICTED: uncharacterized protein LOC10	0.992	0.757	0.807	1e-133
52352665	375	dual protein phosphatase 4 [Castanea sat	1.0	0.754	0.795	1e-130
225448873	378	PREDICTED: uncharacterized protein LOC10	0.992	0.743	0.791	1e-129
147820654	378	hypothetical protein VITISV_036073 [Viti	0.985	0.738	0.797	1e-128
255584370	369	phosphoprotein phosphatase, putative [Ri	1.0	0.766	0.774	1e-126
388492766	385	unknown [Medicago truncatula]	0.992	0.729	0.768	1e-125
449449391	380	PREDICTED: phosphoglucan phosphatase DSP	0.992	0.739	0.727	1e-123

>gi|356535523|ref|XP_003536294.1| PREDICTED: uncharacterized protein LOC100786287 [Glycine max]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/281 (81%), Positives = 251/281 (89%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQD DLEYFGVDI AI+EYAKT +
Sbjct: 89  MNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDSDLEYFGVDINAIREYAKTCN 148

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR RLPAV+SKLYKAIN NGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 149 DIQHLRAEIRDFDAFDLRRRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFW 208

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           VLGYKLNEAH LL SKR CFPKLDAIKSATADILTGL K+ VT SW+ KNC++VEISG+D
Sbjct: 209 VLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEDKNCSTVEISGLD 268

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD ++GLW LKRELPEG YEYKYIVDGEWTCN  EL++SPNKDGHVNN++
Sbjct: 269 IGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNSDELITSPNKDGHVNNFI 328

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           QV D  SSV  +LR RLT+DD DLT DE  +I+ FLEACPD
Sbjct: 329 QVLDDTSSVRASLRKRLTADDPDLTTDEQLRIKEFLEACPD 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647912|gb|ACU24414.1| unknown [Glycine max]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 250/281 (88%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQD DLEYFG+DI AI+EYAKT +
Sbjct: 89  MNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDSDLEYFGIDINAIREYAKTCN 148

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR RLPAV+SKLYKAIN NGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 149 DIQHLRAEIRDFDAFDLRRRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFW 208

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           VLGYKLNEAH LL SKR CFPKLDAIKSATADILTGL K+ VT SW+ KNC++VEISG+D
Sbjct: 209 VLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEDKNCSTVEISGLD 268

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD ++GLW LKRELPEG YEYKYIVDGEWTCN  EL++SPNKDGHVNN++
Sbjct: 269 IGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNSDELITSPNKDGHVNNFI 328

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           QV D  SSV   LR RLT+DD DLT DE  +I+ FLEACPD
Sbjct: 329 QVLDDTSSVRAFLRKRLTADDPDLTTDEQLRIKEFLEACPD 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503936|gb|AFK40034.1| unknown [Lotus japonicus]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/281 (80%), Positives = 250/281 (88%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQ+PDLEYFGVDI AIQEYAKT++
Sbjct: 99  MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKTFN 158

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLRMRLPAV+SKLYKA+  NGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 159 DIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAVTSNGGVTYIHCTAGLGRAPAVALAYMFW 218

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           VLGYKL+EA++LL SKR CFPKLDAIKSATADILTGL K+ VT SW+ +NC+ VEISG+D
Sbjct: 219 VLGYKLDEANRLLQSKRSCFPKLDAIKSATADILTGLSKKPVTLSWEHRNCSRVEISGLD 278

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQRMPL FD ++G W L RELPEGRYEYKYIVDGEWTCNK ELV+SPNKDGHVNN+V
Sbjct: 279 IGWGQRMPLNFDDKRGSWFLNRELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFV 338

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           QV D  +  + +LR RLT DD DL KDE  +I+ FLEA PD
Sbjct: 339 QVLDGTNGANASLRERLTGDDPDLIKDERLRIKEFLEAFPD 379

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576349|ref|XP_003556295.1| PREDICTED: uncharacterized protein LOC100804010 [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/281 (80%), Positives = 248/281 (88%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKL +IGVKTIFCLQQDPDLEYFGVDI AI+EYAKT +
Sbjct: 89  MNYNFIRPDLIVGSCLQTPEDVDKLCRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCN 148

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR RLP V+SKLYKAIN NGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 149 DIQHLRAEIRDFDAFDLRRRLPVVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFW 208

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           VLGYKLNEAH LL SKR CFPKLDAIKSATADILTGL K+ VT SW+G NC++VEISG+D
Sbjct: 209 VLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEGSNCSTVEISGLD 268

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD ++GLW LKRELPEG YEYKYIVDGEWTCN  ELV+SPNKDGHVNN++
Sbjct: 269 IGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNTDELVTSPNKDGHVNNFI 328

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           QV D  + V  +LR RLT DD DLT DE  +I+ FLEACPD
Sbjct: 329 QVLDDTNRVRASLRERLTGDDPDLTTDERLRIKEFLEACPD 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52352665|gb|AAU43782.1| dual protein phosphatase 4 [Castanea sativa]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/284 (79%), Positives = 248/284 (87%), Gaps = 1/284 (0%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           + YNFIRPDLIVGSCLQTPEDVDKLR IGVKTIFCLQQ+ DLEYFGVDI  I+EYAKTYD
Sbjct: 91  INYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQNSDLEYFGVDINGIREYAKTYD 150

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR+RLPAV+SKLYKAINRNGGVTYVHCTAGLGRAPAV LAYMFW
Sbjct: 151 DIQHLRAEIRDFDAFDLRVRLPAVVSKLYKAINRNGGVTYVHCTAGLGRAPAVTLAYMFW 210

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKL EAH LL SKR CFPKLDAIKSA ADILTGLRK++VT +WK  +CT++EISG+D
Sbjct: 211 VQGYKLIEAHNLLQSKRSCFPKLDAIKSAAADILTGLRKKVVTLTWKNPDCTTLEISGLD 270

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD+EQGLWIL+REL EG YEYKYIVDGEWT N+ ELV+S NKDGHVNN+V
Sbjct: 271 IGWGQRIPLQFDEEQGLWILRRELAEGCYEYKYIVDGEWTINENELVTSANKDGHVNNFV 330

Query: 241 QV-DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
           QV DD P S +  LR RLT DD DL+ DE  KIR FLE+ PD E
Sbjct: 331 QVFDDNPDSFNANLRKRLTGDDPDLSMDERLKIRQFLESIPDEE 374

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448873|ref|XP_002263116.1| PREDICTED: uncharacterized protein LOC100246216 [Vitis vinifera] gi|296083472|emb|CBI23430.3| unnamed protein product [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/283 (79%), Positives = 244/283 (86%), Gaps = 2/283 (0%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQ+PEDVDKLR IGVKTIFCLQQD DLEYFGVDI AI EYA T+D
Sbjct: 92  MNYNFIRPDLIVGSCLQSPEDVDKLRSIGVKTIFCLQQDSDLEYFGVDINAIIEYANTFD 151

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR++LPAV+SKLYKAINRNGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 152 DIQHLRAEIRDFDAFDLRLQLPAVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFW 211

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKLNEAH LL+SKR  FPKLDAIKSATADILT L+K+ VT  WK  +CT+VEISG+D
Sbjct: 212 VQGYKLNEAHSLLMSKRSSFPKLDAIKSATADILTDLKKQPVTLKWKDNSCTTVEISGLD 271

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQRMPL FDKEQ LWIL+RELPEG YEYKYIVDGEWTCN++E V +PNKDGHVNNYV
Sbjct: 272 IGWGQRMPLRFDKEQDLWILERELPEGHYEYKYIVDGEWTCNEHEHVRAPNKDGHVNNYV 331

Query: 241 QV-DDAPSSVSEALRNRLTS-DDFDLTKDELHKIRAFLEACPD 281
            V D  P  VS  LR RLT  DD  L++DE  KIR  LEAC +
Sbjct: 332 HVFDSDPHGVSAVLRKRLTGDDDPTLSRDERLKIRQILEACSE 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820654|emb|CAN65362.1| hypothetical protein VITISV_036073 [Vitis vinifera]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/281 (79%), Positives = 243/281 (86%), Gaps = 2/281 (0%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQ+PEDVDKLR IGVKTIFCLQQD DLEYFGVDI AI EYA T+D
Sbjct: 92  MNYNFIRPDLIVGSCLQSPEDVDKLRSIGVKTIFCLQQDSDLEYFGVDINAIIEYANTFD 151

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR++LPAV+SKLYKAINRNGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 152 DIQHLRAEIRDFDAFDLRLQLPAVVSKLYKAINRNGGVTYIHCTAGLGRAPAVALAYMFW 211

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKLNEAH LL+SKR  FPKLDAIKSATADILT L+K+ VT  WK  +CT+VEISG+D
Sbjct: 212 VQGYKLNEAHSLLMSKRSSFPKLDAIKSATADILTDLKKQPVTLKWKDNSCTTVEISGLD 271

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQRMPL FDKEQ LWIL+RELPEG YEYKYIVDGEWTCN++E V +PNKDGHVNNYV
Sbjct: 272 IGWGQRMPLRFDKEQDLWILERELPEGHYEYKYIVDGEWTCNEHEHVRAPNKDGHVNNYV 331

Query: 241 QV-DDAPSSVSEALRNRLTS-DDFDLTKDELHKIRAFLEAC 279
            V D  P  VS  LR RLT  DD  L++DE  KIR  LEAC
Sbjct: 332 HVFDSDPHGVSAVLRKRLTGDDDPTLSRDERLKIRQILEAC 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584370|ref|XP_002532919.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223527312|gb|EEF29461.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/284 (77%), Positives = 245/284 (86%), Gaps = 1/284 (0%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFI PDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI AI+EYAK   
Sbjct: 85  MNYNFILPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDITAIREYAKKCG 144

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFDAFDLR+RLPAV+SKLY+AIN+NGGVTY+HCTAGLGRAP VA+AYMFW
Sbjct: 145 DIQHLRAEIRDFDAFDLRIRLPAVVSKLYRAINQNGGVTYIHCTAGLGRAPGVAMAYMFW 204

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKL++AH LLLSKR CFPKLDAIKSATADILTGLR  LVT +WK   CT+VEISG+D
Sbjct: 205 VQGYKLSDAHDLLLSKRSCFPKLDAIKSATADILTGLRGRLVTLTWKDSKCTTVEISGLD 264

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL  D+E+  WILKREL EG YEYKYI+DGEWT NK+E V+SPNKDGHVNNYV
Sbjct: 265 IGWGQRIPLKLDEERASWILKRELLEGCYEYKYIIDGEWTYNKHEPVTSPNKDGHVNNYV 324

Query: 241 QV-DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
           QV +D  +S+S A+R RLT  D DL +DE  KIR FLE CP  E
Sbjct: 325 QVLNDDTNSISAAIRKRLTGHDPDLMRDERLKIRQFLENCPKDE 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492766|gb|AFK34449.1| unknown [Medicago truncatula]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/281 (76%), Positives = 243/281 (86%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQ+ DLEYFGVDI AI+EYA + +
Sbjct: 102 MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNSDLEYFGVDIDAIREYANSCN 161

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQH+RAEIRDFD+FDLR RLPAVISKLYKAIN NGGVTY+HCTAGLGRAPAVALAYMFW
Sbjct: 162 DIQHLRAEIRDFDSFDLRKRLPAVISKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFW 221

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKLNEA+ LLLSKR CFPKLDAIKSATADILTGL K+ VT SW  +NC++VEI G+D
Sbjct: 222 VQGYKLNEANTLLLSKRSCFPKLDAIKSATADILTGLSKKPVTLSWGHRNCSTVEIPGLD 281

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD +QG W LK+E+ EGRYEYKYIVDGEWTCN  ELV+SPNKDGHVNN++
Sbjct: 282 IGWGQRVPLNFDDKQGSWFLKKEMFEGRYEYKYIVDGEWTCNNDELVTSPNKDGHVNNFI 341

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           +V D   S   +LR R+T D  DLTKDE ++I  FLEA P+
Sbjct: 342 EVLDDADSGRASLRERVTGDGPDLTKDERNRIIEFLEALPN 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449391|ref|XP_004142448.1| PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Cucumis sativus] gi|449513216|ref|XP_004164264.1| PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Cucumis sativus]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/283 (72%), Positives = 242/283 (85%), Gaps = 2/283 (0%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR IGV+T+FCLQQDPDLEYFGVDI AI  Y KT+D
Sbjct: 96  MNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTVFCLQQDPDLEYFGVDIGAIIAYTKTFD 155

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DI+H+RA+IRDFDAFDLR+RLPAV+SKL+KAINRNGGVTY+HCTAGLGRAPAVA+AYMFW
Sbjct: 156 DIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVTYIHCTAGLGRAPAVAMAYMFW 215

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GY+LNEA +LLLSKR CFPK+DAIKSATADIL+G +K+ V  SW+   C++VE++G+D
Sbjct: 216 VQGYQLNEALELLLSKRSCFPKIDAIKSATADILSGFKKKPVALSWEDDQCSTVEVAGLD 275

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PL FD+ +G WIL REL EGRYEYKYI+DG WTCNK E V+ PN+DGHVNN++
Sbjct: 276 IGWGQRIPLKFDEARGAWILNRELAEGRYEYKYIIDGIWTCNKNEPVTPPNQDGHVNNFI 335

Query: 241 QV--DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPD 281
           +V  D+ P S    LR RL  D+ +LT +E  KIR FLEACPD
Sbjct: 336 EVIEDEDPGSDRAILRRRLIGDEPELTAEERSKIRQFLEACPD 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2083845	379	SEX4 "STARCH-EXCESS 4" [Arabid	1.0	0.746	0.724	2.6e-111
UNIPROTKB|A8J2N4	428	DSP8 "Dual specificity protein	0.964	0.637	0.452	1.5e-60
TAIR|locus:2085542	282	LSF2 "LIKE SEX4 2" [Arabidopsi	0.537	0.539	0.480	6.7e-33
UNIPROTKB|Q2RBF6	271	Os11g0113100 "cDNA clone:J0231	0.537	0.560	0.5	2.9e-32
UNIPROTKB|Q2QYN1	271	LOC_Os12g02120 "Dual specifici	0.537	0.560	0.493	4.7e-32
TAIR|locus:2084133	591	LSF1 "AT3G01510" [Arabidopsis	0.840	0.402	0.305	1.5e-26
UNIPROTKB|A8J1L0	204	DSP6 "Dual-specificity protein	0.526	0.730	0.421	2.2e-25
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.353	0.384	0.346	4e-09
UNIPROTKB|E2QVF7	193	E2QVF7 "Uncharacterized protei	0.533	0.782	0.269	9e-09
UNIPROTKB|Q22X01	480	TTHERM_00633520 "Dual specific	0.462	0.272	0.285	1.2e-08

TAIR|locus:2083845 SEX4 "STARCH-EXCESS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 205/283 (72%), Positives = 234/283 (82%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
             M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI +IQ YAK Y 
Sbjct:    96 MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYS 155

Query:    61 DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
             DIQHIR EIRDFDAFDLRMRLPAV+  LYKA+ RNGGVTYVHCTAG+GRAPAVAL YMFW
Sbjct:   156 DIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHCTAGMGRAPAVALTYMFW 215

Query:   121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
             V GYKL EAH+LL+SKR CFPKLDAI++AT DILTGL+++ VT + K K  + VEISG+D
Sbjct:   216 VQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLD 275

Query:   181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
             IGWGQR+PLT DK  G WILKRELPEG++EYKYI+DGEWT N+ E    PNKDGH NNY 
Sbjct:   276 IGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA 335

Query:   241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
             +V D P+SV    R RL+S+D +L ++E  K+  FLE C + E
Sbjct:   336 KVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 378

GO:0005737 "cytoplasm" evidence=ISM

GO:0006470 "protein dephosphorylation" evidence=IEA;ISS

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA;ISS

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005982 "starch metabolic process" evidence=RCA;IMP;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019203 "carbohydrate phosphatase activity" evidence=IDA

GO:0005983 "starch catabolic process" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|A8J2N4 DSP8 "Dual specificity protein phosphatase 8" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 129/285 (45%), Positives = 181/285 (63%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKL-RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY 59
             + YN I PDLIVGSCLQT  DVD L  +  V+TIFCLQ+DPD+ YF +DII IQE     
Sbjct:   122 LNYNRILPDLIVGSCLQTVADVDHLYNKENVRTIFCLQEDPDMAYFSLDIIPIQERCAEL 181

Query:    60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119
               ++H+R  IRDFD FDLR +LP  +++L +  +   G  Y+HCTAG+GRAPA ALAYMF
Sbjct:   182 G-LKHVRFPIRDFDGFDLRRKLPKAVARLARDHDPTAGTVYIHCTAGMGRAPATALAYMF 240

Query:   120 WVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFS-WKGKNCTSVEISG 178
             W+  ++L+ A++LL  KR C P+++AI+SAT D+L G     VT + ++    T  +I+G
Sbjct:   241 WLRDFQLDAAYELLRGKRMCSPRIEAIRSATVDLLVGSEPVPVTIAVFRTGTATDFKIAG 300

Query:   179 IDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGH-VN 237
             +D+GW Q++PL  +   G  +L R L  G+Y YK++VDG WT   Y       +DG+  N
Sbjct:   301 LDVGWHQQLPLEREPGTGRMVLNRVLQPGKYAYKFVVDGHWT---YSADHPTLQDGNNTN 357

Query:   238 NYVQV--DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACP 280
             NYV+V   + P  +  A + RL     DLT++E  ++R  L  CP
Sbjct:   358 NYVEVLGREVPEHLQLA-QQRLLQPGGDLTEEERAELRMML--CP 399

GO:0000188 "inactivation of MAPK activity" evidence=IBA

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0033549 "MAP kinase phosphatase activity" evidence=IBA

GO:0043405 "regulation of MAP kinase activity" evidence=IBA

TAIR|locus:2085542 LSF2 "LIKE SEX4 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 74/154 (48%), Positives = 97/154 (62%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKLRQI-GVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY 59
             M Y  IR +LIVGS  Q PED+D L+Q   V  I  LQQD D+EY+G+D+ +I    K  
Sbjct:    91 MNYTLIRDELIVGSQPQKPEDIDHLKQEQNVAYILNLQQDKDIEYWGIDLDSIVRRCKEL 150

Query:    60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119
               I+H+R   +DFD   LR +LP  +S L  A++   G  YVHC+AGLGRAP V++AYM+
Sbjct:   151 G-IRHMRRPAKDFDPLSLRSQLPKAVSSLEWAVSEGKGRVYVHCSAGLGRAPGVSIAYMY 209

Query:   120 WVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADI 153
             W     LN A+  L+SKRPC P   AI+ AT D+
Sbjct:   210 WFCDMNLNTAYDTLVSKRPCGPNKGAIRGATYDL 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0009507 "chloroplast" evidence=IDA

GO:0005983 "starch catabolic process" evidence=IMP

GO:0019203 "carbohydrate phosphatase activity" evidence=IMP

GO:0050308 "sugar-phosphatase activity" evidence=IDA

GO:2001070 "starch binding" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q2RBF6 Os11g0113100 "cDNA clone:J023127J23, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/154 (50%), Positives = 94/154 (61%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKLR-QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY 59
             M Y  I   LIVGS  Q PED+D L+ +  V  I CLQQD D+EY+G+D   +    K  
Sbjct:    80 MNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDKDIEYWGIDFQTVVNRCKEL 139

Query:    60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119
               I+HIR    DFD   LR +LP  +S L  AI+   G  YVHCTAGLGRAPAVA+AYMF
Sbjct:   140 G-IKHIRRPAVDFDPDSLRTQLPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYMF 198

Query:   120 WVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADI 153
             W     L  A++ L SKRPC P   AI++AT D+
Sbjct:   199 WFENMDLRTAYEKLTSKRPCGPNKRAIRAATYDL 232

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0009507 "chloroplast" evidence=IBA

UNIPROTKB|Q2QYN1 LOC_Os12g02120 "Dual specificity phosphatase, catalytic domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 76/154 (49%), Positives = 94/154 (61%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKLR-QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTY 59
             M Y  I   LIVGS  Q PED+D L+ +  V  I CLQQD D+EY+G+D   +    K  
Sbjct:    80 MNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQDKDIEYWGIDFQTVVNRCKEL 139

Query:    60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF 119
               I+HIR    DFD   LR +LP  ++ L  AI+   G  YVHCTAGLGRAPAVA+AYMF
Sbjct:   140 G-IKHIRRPAVDFDPDSLRTQLPKAVASLEWAISEGKGRVYVHCTAGLGRAPAVAIAYMF 198

Query:   120 WVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADI 153
             W     L  A++ L SKRPC P   AI++AT D+
Sbjct:   199 WFENMNLKTAYEKLTSKRPCGPNKRAIRAATYDL 232

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0009507 "chloroplast" evidence=IBA

TAIR|locus:2084133 LSF1 "AT3G01510" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 78/255 (30%), Positives = 125/255 (49%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
             M Y+ I   + VGSC+QT EDV+ L + G+  I   Q   + + +G+D  +I +  +   
Sbjct:   290 MRYSKITEQIYVGSCIQTEEDVENLSEAGITAILNFQGGTEAQNWGIDSQSINDACQK-S 348

Query:    61 DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
             ++  I   I+D D+FDLR +LP  +  L + + +N  V +V CT G  R+ A  +AY+ W
Sbjct:   349 EVLMINYPIKDADSFDLRKKLPLCVGLLLRLLKKNHRV-FVTCTTGFDRSSACVIAYLHW 407

Query:   121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT--------GLRKELVTFSWKGKNCT 172
             +    L+ A+  +     C P   AI  AT D++         G     VTF W G    
Sbjct:   408 MTDTSLHAAYSFVTGLHACKPDRPAIAWATWDLIAMVDDGKHDGTPTHSVTFVWNGHEGE 467

Query:   173 SVEISGIDIG-WGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPN 231
              V + G   G W + +  T  K    +  +  L +G+Y YKYI++G+W   ++   S   
Sbjct:   468 EVLLVGDFTGNWKEPIKATH-KGGPRFETEVRLTQGKYYYKYIINGDW---RHSATSPTE 523

Query:   232 KD--GHVNNYVQVDD 244
             +D  G+ NN + V D
Sbjct:   524 RDDRGNTNNIIVVGD 538

GO:0006470 "protein dephosphorylation" evidence=IEA;IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA;IBA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005983 "starch catabolic process" evidence=IMP

GO:0043036 "starch grain" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|A8J1L0 DSP6 "Dual-specificity protein phosphatase 6" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 64/152 (42%), Positives = 89/152 (58%)

Query:     3 YNFIRPDLIVGSCLQTPEDVDKLRQI-GVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD 61
             Y+ I P+LI G+  +   +VD L    G+  I  LQ+D D+ Y+GV I  I+     +  
Sbjct:    19 YHEIIPNLICGTQPRNAGEVDTLADNEGITHILNLQEDKDMHYWGVKIEDIRRACAKHS- 77

Query:    62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
             I H+R   +DFD   LR  +P  +  L  A+   GG  YVHCTAGLGRAP V +AY++W 
Sbjct:    78 INHMRRPAKDFDKGSLRKAIPGAVHTLAGAM-AGGGRVYVHCTAGLGRAPGVCIAYLYWF 136

Query:   122 LGYKLNEAHQLLLSKRPCFPKLDAIKSATADI 153
                +L+EA+  L + RPC PK DAI+ AT D+
Sbjct:   137 TDMQLDEAYSHLTTIRPCGPKRDAIRGATYDV 168

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

GO:0009507 "chloroplast" evidence=IBA

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 36/104 (34%), Positives = 55/104 (52%)

Query:   151 ADILTGLRKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYE 210
             +D  T L +    F WKG     + +SG    W  ++PL  +K    ++   +LPEG ++
Sbjct:    58 SDSKTPLEERPTVFRWKGPG-KEIYLSGSFNNWATKIPL--NKSHNNFVAIIDLPEGEHQ 114

Query:   211 YKYIVDGEWTCNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALR 254
             YK+ VDG WT +  E V + NK G VNN ++V      V +AL+
Sbjct:   115 YKFYVDGHWTLDPKEPVVT-NKSGVVNNVIKVRKTDFEVFDALK 157

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|E2QVF7 E2QVF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 9.0e-09, P = 9.0e-09
 Identities = 44/163 (26%), Positives = 77/163 (47%)

Query:     1 MTYNFIRPDLIVGSCLQTPEDVD-KLR-QIGVKTIFCLQQDPDL--EYFGV----DIIAI 52
             M Y+ I P++ +GSC +  E +  KL+ ++G+  +   Q + D+     G     + +  
Sbjct:    17 MHYSRILPNIWLGSCPRQVEHITIKLKHELGITAVMNFQTEWDIVQNSSGCNRYPEPMTP 76

Query:    53 QEYAKTYDD--IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRA 110
                 K Y +  + +I     D         LP  +  L+ A+  NG   YVHC AG+GR+
Sbjct:    77 DTMIKLYKEEGLVYIWMPTPDMSTEGRVQMLPQAVCLLH-ALLENGHTVYVHCNAGVGRS 135

Query:   111 PAVALAYMFWVLGYKLNEAHQLLLSKRPC-FPKLDAIKSATAD 152
              A    ++ +V+G+ L +    L++KRP  +   DA+  A  D
Sbjct:   136 TAAVCGWLQYVMGWNLRKVQYFLMAKRPAVYIDEDALARAEED 178

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|Q22X01 TTHERM_00633520 "Dual specificity phosphatase, catalytic domain containing protein" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 38/133 (28%), Positives = 68/133 (51%)

Query:     6 IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
             I  ++ +G   Q+ EDV +L + G++ +  LQ + D++  G   I +  + KTY+ IQ  
Sbjct:   275 IDDNIYLGPYPQSEEDVKELSERGIRAVLNLQTEKDMQLKGAAYIKLLRFYKTYN-IQPF 333

Query:    66 RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
                + D D  D+  +L  V S+L   +       YVHCTAG+ R+P   + Y  +    K
Sbjct:   334 HFPVIDMDVIDMCYKLQDV-SRLLNYLVSTMKRVYVHCTAGMFRSPQCVIGYYTYFKNMK 392

Query:   126 LNEAHQLLLSKRP 138
             + +A + + ++ P
Sbjct:   393 VQQAIKYVENQHP 405

GO:0006470 "protein dephosphorylation" evidence=IBA

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FEB5	DSP4_ARATH	3, ., 1, ., 3, ., -	0.7243	1.0	0.7467	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	LOW CONFIDENCE prediction!
3rd Layer	3.1.3	0.691
3rd Layer	3.1.3.48	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018076001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (378 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019399001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (585 aa)				•			•		0.551
	GSVIVG00002767001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (1200 aa)				•			•		0.535
	GSVIVG00033526001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (1117 aa)				•			•		0.471
	GSVIVG00023316001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (967 aa)				•			•		0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	4e-23
pfam00782	131	pfam00782, DSPc, Dual specificity phosphatase, cat	4e-14
smart00195	138	smart00195, DSPc, Dual specificity phosphatase, ca	2e-13
cd00127	139	cd00127, DSPc, Dual specificity phosphatases (DSP)	1e-12
cd02688	82	cd02688, E_set, Early set domain associated with t	1e-08
COG2453	180	COG2453, CDC14, Predicted protein-tyrosine phospha	1e-06
pfam13350	163	pfam13350, Y_phosphatase3, Tyrosine phosphatase fa	2e-05
cd11294	83	cd11294, E_set_Esterase_like_N, N-terminal Early s	2e-04
COG2365	249	COG2365, COG2365, Protein tyrosine/serine phosphat	0.004

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 90.0 bits (224), Expect = 4e-23
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
           VTF W G     V ++G    W Q +PL      G +    ELP GRYEYK+IVDGEW  
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKS-GDGEFSATVELPPGRYEYKFIVDGEWVH 60

Query: 222 NKYELVSSPNKDGHVNNYVQV 242
           +  +L +  ++ G++NN ++V
Sbjct: 61  DP-DLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 58  TYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAY 117
               I ++   + D    ++   LP  +  +  AI + G V  VHC AG+ R+  + +AY
Sbjct: 34  LNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAIQKGGKV-LVHCQAGISRSATLIIAY 92

Query: 118 MFWVLGYKLNEAHQLLLSKRPCF 140
           +       LNEA+  +  +RP  
Sbjct: 93  LMKTRNLSLNEAYSFVKERRPII 115

Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region. Length = 131

>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQ-DPDLEYFGVDIIAIQEYAKTYDDIQH 64
           I P L +GS      ++  L+++G+  +  +    P+        + +            
Sbjct: 4   ILPHLYLGSY-SDALNLALLKKLGITHVINVTNEVPNYNGSDFTYLGVP----------- 51

Query: 65  IRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124
               I D     +    P  +  +  A ++ G V  VHC AG+ R+  + +AY+      
Sbjct: 52  ----IDDNTETKISPYFPEAVEFIEDAESKGGKV-LVHCQAGVSRSATLIIAYLMKTRNM 106

Query: 125 KLNEAHQLLLSKRPCF 140
            LN+A+  +  +RP  
Sbjct: 107 SLNDAYDFVKDRRPII 122

Length = 138

>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 16/136 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCL-QQDPDLEYFGVDIIAIQEYAKTYDDIQH 64
           I P L +GS      D + L+++G+  +  + ++ P+   F               D  +
Sbjct: 5   ITPGLYLGSY-PAASDKELLKKLGITHVLNVAKEVPNENLF-------------LSDFNY 50

Query: 65  IRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124
           +   I D  + D+       +  +  A  + G V  VHC AG+ R+  + +AY+   LG 
Sbjct: 51  LYVPILDLPSQDISKYFDEAVDFIDDAREKGGKV-LVHCLAGVSRSATLVIAYLMKTLGL 109

Query: 125 KLNEAHQLLLSKRPCF 140
            L EA++ + S+RP  
Sbjct: 110 SLREAYEFVKSRRPII 125

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like. Length = 139

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 162 VTFSWKGKNCTSVEISGIDIGW--GQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEW 219
           VTF        SV + G   GW   Q +P+T +   G+W     LP G YEYKY++DG  
Sbjct: 2   VTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG-GVWSATIPLPLGTYEYKYVIDGGK 60

Query: 220 TCNKYELVS-SPNKDGHVNNYV 240
               Y              + V
Sbjct: 61  NVLPYFDPYYVAGDGNSGASIV 82

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 1   MTYNFIRPDLI---VGSCLQT--------PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDI 49
              N    D     + S +               +L    + ++       +LE  G   
Sbjct: 4   PAGNLPSADFEATAILSEIYPGEVSIRGVRPLGYELGIQTILSLINALVIEELELLGALY 63

Query: 50  IAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGR 109
               E     D IQ +   I D    DL   L  ++  + +A+++   V  VHC  G+GR
Sbjct: 64  NVAIEEN---DGIQVLHLPILDGTVPDLE-DLDKIVDFIEEALSKGKKV-VVHCQGGIGR 118

Query: 110 APAVALAY-MFWVLGYKLNEAHQLLLSKRP 138
           +  V  AY M +      +EA  +   +RP
Sbjct: 119 SGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148

Length = 180

>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 18  TPEDVDKLRQIGVKTIFCL------QQDPDLEYFGVDIIAI---QEYAKTYDDIQHIRAE 68
           T  D+  L ++G++T+  L         PD    GV  + +    + A + +D+  +  +
Sbjct: 31  TDADLATLAELGIRTVIDLRSPAERAAAPDPLPEGVTYVHLPVLGDDASSPEDLARLLKD 90

Query: 69  IRDFDAFDLRM-----RLPAVISKLYKAINRNGGVTYVHCTAG 106
             D  AF   +        A    L + +    G    HCTAG
Sbjct: 91  PADAVAFMADLYRDLVTDAAAYRALLELLADPDGPVLFHCTAG 133

This family is closely related to the pfam00102 and pfam00782 families. Length = 163

>gnl|CDD|199894 cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLW-----ILKRELPEGRYEYKYIVD 216
           VTF         VE++G  +     + +T D + G+W      L  E+    Y Y + VD
Sbjct: 3   VTFRLFAPKAKKVEVTGDFLPGPGPVAMTKD-DDGVWSVTTGPLAPEI----YSYSFNVD 57

Query: 217 G 217
           G
Sbjct: 58  G 58

E or "early" set domains are associated with the catalytic domain of esterase at the N-terminal end. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term esterase can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminal domain of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 83

>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal transduction mechanisms]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 20  EDVDKLRQIGVKTIFCLQQ--DPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL 77
            D + L  + +KTI  L+   + ++E +   +I   + A    +           +    
Sbjct: 66  PDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRS---FPTREDAAE 122

Query: 78  RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
           R+     +     A   NG V  +HCTAG  R   VA  Y   V G     A   LL+ R
Sbjct: 123 RLVELLQL----LADAENGPV-LIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNR 177

Query: 138 PCFPKLDAIKSATADI-LTGLRKELVTFS 165
              P+   I    ++  L  L K+L TFS
Sbjct: 178 YGEPERRGILEYVSEKLLDDLEKKLQTFS 206

Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG1718	198	consensus Dual specificity phosphatase [Defense me	100.0
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	99.97
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	99.95
KOG1717	343	consensus Dual specificity phosphatase [Defense me	99.95
KOG1716	285	consensus Dual specificity phosphatase [Defense me	99.95
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	99.95
PRK12361	547	hypothetical protein; Provisional	99.91
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.91
KOG1719	183	consensus Dual specificity phosphatase [Defense me	99.91
PTZ00242	166	protein tyrosine phosphatase; Provisional	99.89
PTZ00393	241	protein tyrosine phosphatase; Provisional	99.85
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.82
KOG1720	225	consensus Protein tyrosine phosphatase CDC14 [Defe	99.82
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	99.76
PF03162	164	Y_phosphatase2: Tyrosine phosphatase family; Inter	99.74
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	99.67
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	99.66
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.63
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	99.62
KOG2836	173	consensus Protein tyrosine phosphatase IVA1 [Signa	99.53
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	99.52
PLN02727	986	NAD kinase	99.41
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	99.25
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.19
KOG1572	249	consensus Predicted protein tyrosine phosphatase [	99.19
smart00012	105	PTPc_DSPc Protein tyrosine phosphatase, catalytic	99.18
smart00404	105	PTPc_motif Protein tyrosine phosphatase, catalytic	99.18
KOG2283	434	consensus Clathrin coat dissociation kinase GAK/PT	99.06
cd00047	231	PTPc Protein tyrosine phosphatases (PTP) catalyze	98.96
smart00194	258	PTPc Protein tyrosine phosphatase, catalytic domai	98.86
COG5350	172	Predicted protein tyrosine phosphatase [General fu	98.76
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.76
PRK15375	535	pathogenicity island 1 effector protein StpP; Prov	98.61
COG2365	249	Protein tyrosine/serine phosphatase [Signal transd	98.55
PF14566	149	PTPlike_phytase: Inositol hexakisphosphate; PDB: 1	98.52
PHA02742	303	protein tyrosine phosphatase; Provisional	98.42
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.41
PHA02740	298	protein tyrosine phosphatase; Provisional	98.4
PHA02747	312	protein tyrosine phosphatase; Provisional	98.4
PF00102	235	Y_phosphatase: Protein-tyrosine phosphatase; Inter	98.39
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.38
PHA02746	323	protein tyrosine phosphatase; Provisional	98.33
PHA02738	320	hypothetical protein; Provisional	98.23
PF04179	451	Init_tRNA_PT: Initiator tRNA phosphoribosyl transf	98.0
KOG0792	1144	consensus Protein tyrosine phosphatase PTPMEG, con	98.0
KOG2386	393	consensus mRNA capping enzyme, guanylyltransferase	97.91
KOG0790	600	consensus Protein tyrosine phosphatase Corkscrew a	97.9
COG5599	302	PTP2 Protein tyrosine phosphatase [Signal transduc	97.85
KOG0791	374	consensus Protein tyrosine phosphatase, contains f	97.74
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.54
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.43
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.43
KOG0789	415	consensus Protein tyrosine phosphatase [Signal tra	97.41
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.39
PRK12568	730	glycogen branching enzyme; Provisional	97.08
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	96.98
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	96.9
PRK14705	1224	glycogen branching enzyme; Provisional	96.85
PRK12313	633	glycogen branching enzyme; Provisional	96.85
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	96.82
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.79
PRK05402	726	glycogen branching enzyme; Provisional	96.79
KOG0793	1004	consensus Protein tyrosine phosphatase [Signal tra	96.69
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	96.65
PRK14706	639	glycogen branching enzyme; Provisional	96.6
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.54
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.46
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.42
PLN02447	758	1,4-alpha-glucan-branching enzyme	96.34
PF14671	141	DSPn: Dual specificity protein phosphatase, N-term	96.26
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	96.11
KOG4228	1087	consensus Protein tyrosine phosphatase [Signal tra	96.11
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	95.94
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.94
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	95.89
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	95.84
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	95.57
PRK05402	726	glycogen branching enzyme; Provisional	95.45
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	95.21
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	95.18
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	94.98
KOG4228	1087	consensus Protein tyrosine phosphatase [Signal tra	94.96
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	94.75
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	94.72
PLN02160	136	thiosulfate sulfurtransferase	94.43
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	93.99
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	93.41
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	93.39
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	93.08
PRK01415	247	hypothetical protein; Validated	92.57
KOG4471	717	consensus Phosphatidylinositol 3-phosphate 3-phosp	92.29
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	92.29
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	91.69
PLN02316	1036	synthase/transferase	89.54
PF06602	353	Myotub-related: Myotubularin-like phosphatase doma	88.86
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	88.65
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	88.02
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	87.7
KOG1089	573	consensus Myotubularin-related phosphatidylinosito	87.62
PLN02950	909	4-alpha-glucanotransferase	86.37
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	86.25
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	86.1
PLN02950	909	4-alpha-glucanotransferase	85.99
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	85.53
PLN02316	1036	synthase/transferase	84.25
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	83.66
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	83.45
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	83.43
PLN02960	897	alpha-amylase	82.75
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	82.32
PRK03705	658	glycogen debranching enzyme; Provisional	80.54

>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=100.00  E-value=3.6e-32  Score=213.90  Aligned_cols=163  Identities=25%  Similarity=0.363  Sum_probs=141.3

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      +++|+|+||+++. ..+.+...|+++||++|||.+.+.....              .++++|..+|+.|.+...+..+|+
T Consensus        17 ~SqIt~sLfl~~G-vaA~~k~~l~~~~It~IiNat~E~pn~~--------------l~~~qy~kv~~~D~p~~~l~~hfD   81 (198)
T KOG1718|consen   17 MSQITPSLFLSNG-VAANDKLLLKKRKITCIINATTEVPNTS--------------LPDIQYMKVPLEDTPQARLYDHFD   81 (198)
T ss_pred             hhhcCcceeEecc-ccccCHHHHHhcCceEEEEcccCCCCcc--------------CCCceeEEEEcccCCcchhhhhhh
Confidence            6899999999965 4788999999999999999998764311              257999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhccccce
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRKEL  161 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~~~  161 (283)
                      .+.+.|+... .+||++||||.||+|||+++|+||||++.+|++.||+.++|++||.+ ||-||++|            +
T Consensus        82 ~vAD~I~~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~Q------------L  148 (198)
T KOG1718|consen   82 PVADKIHSVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQ------------L  148 (198)
T ss_pred             HHHHHHHHHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHH------------H
Confidence            9999998875 67899999999999999999999999999999999999999999998 88877775            4


Q ss_pred             EEEEeeCCCcceEEEeeccCCCCccccceeecC
Q 040474          162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKE  194 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~  194 (283)
                      +.++.+..|..+|.++.+-.+= +.+|..+.++
T Consensus       149 i~YE~qL~g~~sV~MV~~p~~d-~~iPDvye~e  180 (198)
T KOG1718|consen  149 IDYEQQLFGNASVRMVQTPVGD-QLIPDVYEKE  180 (198)
T ss_pred             HHHHHHhcCCCeEEEEeccccC-ccCchhhccc
Confidence            4455556888899999987663 5788888754

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=99.97  E-value=1.1e-29  Score=202.12  Aligned_cols=130  Identities=21%  Similarity=0.394  Sum_probs=116.9

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      .++|.|+||+|++| ++.+.+.|+++||++||||+.+.+..              ...++.|+++|+.|....++...+.
T Consensus         1 ~~~I~~~l~~G~~~-~~~~~~~l~~~gi~~Vi~l~~~~~~~--------------~~~~~~~~~ipi~D~~~~~~~~~~~   65 (138)
T smart00195        1 PSEILPHLYLGSYS-SALNLALLKKLGITHVINVTNEVPNL--------------NKKGFTYLGVPILDNTETKISPYFP   65 (138)
T ss_pred             CcEEeCCeEECChh-HcCCHHHHHHcCCCEEEEccCCCCCC--------------CCCCCEEEEEECCCCCCCChHHHHH
Confidence            37899999999997 88899999999999999999876421              1257999999999977777778899


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++|+..+ +.+++|||||.+|+|||+++++||||+..|+++++|+++|+++||.+ ||.+++.+
T Consensus        66 ~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~q  131 (138)
T smart00195       66 EAVEFIEDAE-KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQ  131 (138)
T ss_pred             HHHHHHHHHh-cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHH
Confidence            9999999986 66889999999999999999999999999999999999999999987 99999887

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=99.95  E-value=1.7e-27  Score=189.38  Aligned_cols=132  Identities=25%  Similarity=0.455  Sum_probs=117.2

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      +++|.|+||+|++| ++.+.+.|+++||++||||+.+.+...            ....++.|+++|+.|.+..++...+.
T Consensus         2 ~~~i~~~l~~g~~~-~~~d~~~L~~~gi~~VI~l~~~~~~~~------------~~~~~~~~~~~~~~D~~~~~~~~~~~   68 (139)
T cd00127           2 LSEITPGLYLGSYP-AASDKELLKKLGITHVLNVAKEVPNEN------------LFLSDFNYLYVPILDLPSQDISKYFD   68 (139)
T ss_pred             cCEEcCCeEECChh-HhcCHHHHHHcCCCEEEEcccCCCCcc------------cCCCCceEEEEEceeCCCCChHHHHH
Confidence            68999999999997 888999999999999999998775311            11358999999999988777777899


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++|.... +++++|||||.+|+|||++++++|||...++++++|+++|++.||.+ ||.+++.+
T Consensus        69 ~~~~~i~~~~-~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~  134 (139)
T cd00127          69 EAVDFIDDAR-EKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQ  134 (139)
T ss_pred             HHHHHHHHHH-hcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHH
Confidence            9999999887 55789999999999999999999999999999999999999999987 99888876

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=99.95  E-value=1.2e-27  Score=201.00  Aligned_cols=131  Identities=23%  Similarity=0.402  Sum_probs=118.1

Q ss_pred             ccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHH
Q 040474            4 NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPA   83 (283)
Q Consensus         4 ~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~   83 (283)
                      .+|+|+||+|+. .++.+.+.|++.||++|||+++.....+            .....+.|..||+.|.-..++.+.|++
T Consensus       173 V~ilp~LYLg~a-~ds~NldvLkk~gI~yviNVTpnlpn~f------------e~~g~f~YkqipisDh~Sqnls~ffpE  239 (343)
T KOG1717|consen  173 VEILPNLYLGCA-KDSTNLDVLKKYGIKYVINVTPNLPNNF------------ENNGEFIYKQIPISDHASQNLSQFFPE  239 (343)
T ss_pred             hhhccchhcccc-cccccHHHHHhcCceEEEecCCCCcchh------------hcCCceeEEeeeccchhhhhhhhhhHH
Confidence            379999999999 6999999999999999999997664321            123579999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      ++.||+++..+ +.-|||||.+|+|||+|+++||||.+..+++++|+++|+.++..+ ||..|+-|
T Consensus       240 AIsfIdeArsk-~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQ  304 (343)
T KOG1717|consen  240 AISFIDEARSK-NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQ  304 (343)
T ss_pred             HHHHHHHhhcc-CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHH
Confidence            99999999754 455999999999999999999999999999999999999999998 99999987

>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=99.95  E-value=3.7e-27  Score=209.02  Aligned_cols=135  Identities=27%  Similarity=0.451  Sum_probs=122.7

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      ++++.|.|+||+|+.. .+.+...|+++||++|+|+....+...+-           ..+++.|+++|+.|.+..++..+
T Consensus        73 ~~~~~i~p~l~lg~~~-~~~~~~~l~~~~it~vln~~~~~~~~~~~-----------~~~~~~y~~i~~~D~~~~~i~~~  140 (285)
T KOG1716|consen   73 NPIVEILPNLYLGSQG-VASDPDLLKKLGITHVLNVSSSCPNPRFL-----------KEQGIKYLRIPVEDNPSTDILQH  140 (285)
T ss_pred             CCceeecCCceecCcc-cccchhhHHHcCCCEEEEecccCCccccc-----------cccCceEEeccccCCccccHHHH
Confidence            3678999999999995 99999999999999999999887543210           11379999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |+++++||+.+. .++++|||||.+|+|||+++++||||+.++|++++|+++|+++|+.+ ||.+|+.|
T Consensus       141 ~~~~~~fI~~a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~Q  208 (285)
T KOG1716|consen  141 FPEAISFIEKAR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQ  208 (285)
T ss_pred             HHHHHHHHHHHH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHH
Confidence            999999999997 67899999999999999999999999999999999999999999998 99999998

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.95  E-value=3.5e-27  Score=186.29  Aligned_cols=125  Identities=30%  Similarity=0.445  Sum_probs=110.4

Q ss_pred             eEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHH
Q 040474           10 LIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLY   89 (283)
Q Consensus        10 l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~   89 (283)
                      ||+|+.+ ++. .+.|+++||++|||++.+.+..           ......++.|+++|+.|....++...+..++++|+
T Consensus         1 lylG~~~-~a~-~~~l~~~~I~~Vin~~~~~~~~-----------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~   67 (133)
T PF00782_consen    1 LYLGSYP-AAS-IAFLKNLGITHVINLQEECPNP-----------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIE   67 (133)
T ss_dssp             EEEEEHH-HHC-HHHHHHTTEEEEEECSSSSSTS-----------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHH
T ss_pred             CEEeCHH-HHh-HHHHHHCCCCEEEEccCCCcCc-----------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhh
Confidence            7999996 777 9999999999999999876542           11123689999999999777888889999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           90 KAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        90 ~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      ++. +.+++|||||.+|+|||+++++||||...+|++++|+++|+++||.+ ||.+++.+
T Consensus        68 ~~~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~  126 (133)
T PF00782_consen   68 NAI-SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQ  126 (133)
T ss_dssp             HHH-HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHH
T ss_pred             hhh-cccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            996 56789999999999999999999999999999999999999999997 88877776

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>PRK12361 hypothetical protein; Provisional

Probab=99.91  E-value=5.5e-24  Score=204.96  Aligned_cols=133  Identities=23%  Similarity=0.316  Sum_probs=112.9

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      +++|.|+||+|+.+ .+.+.+.|++.||++||||+.+.+.....          ....++.|+++|+.|...+.. .++.
T Consensus        95 ~~~I~~~l~lG~~~-~a~d~~~L~~~gI~~Vldlt~E~~~~~~~----------~~~~~i~yl~iPi~D~~~p~~-~~l~  162 (547)
T PRK12361         95 IQKIDENLYLGCRL-FPADLEKLKSNKITAILDVTAEFDGLDWS----------LTEEDIDYLNIPILDHSVPTL-AQLN  162 (547)
T ss_pred             ceEEcCcEEECCCC-CcccHHHHHHcCCCEEEEccccccccccc----------ccccCceEEEeecCCCCCCcH-HHHH
Confidence            57899999999996 99999999999999999999765321100          012479999999999877754 5799


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-hCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      ++++||++.+ +.+++|||||.+|+|||+++++||||.+ .++++++|+++|+++||.+ ||.+.++.
T Consensus       163 ~a~~~i~~~~-~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~  229 (547)
T PRK12361        163 QAINWIHRQV-RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRA  229 (547)
T ss_pred             HHHHHHHHHH-HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            9999999997 5678999999999999999999999966 5899999999999999997 98866554

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.91  E-value=2.7e-24  Score=154.20  Aligned_cols=78  Identities=33%  Similarity=0.687  Sum_probs=71.8

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcceE
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNY  239 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~  239 (283)
                      .+|+|+|.. ++++|+|+|||++|+..+||.+.+ ++ |++++.||||.|+|||+|||+|.+||++|++ .|++|+.||+
T Consensus         2 ~~v~f~~~~-~a~~V~v~G~F~~W~~~~pm~~~~-~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~-~d~~G~~NN~   77 (79)
T cd02859           2 VPTTFVWPG-GGKEVYVTGSFDNWKKKIPLEKSG-KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE-TDDEGNVNNV   77 (79)
T ss_pred             eEEEEEEcC-CCcEEEEEEEcCCCCccccceECC-CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc-CCCCCcEeee
Confidence            589999999 559999999999999889999974 34 9999999999999999999999999999988 6999999999


Q ss_pred             EE
Q 040474          240 VQ  241 (283)
Q Consensus       240 i~  241 (283)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=99.91  E-value=4.6e-24  Score=165.88  Aligned_cols=145  Identities=21%  Similarity=0.264  Sum_probs=122.8

Q ss_pred             cccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHH
Q 040474            5 FIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAV   84 (283)
Q Consensus         5 ~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~   84 (283)
                      .|...+.+|..|-...+.+.+++.|+..|+++.++.|....   ...+..     .|++++.+|..|....+....+.++
T Consensus        27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~---s~~wk~-----~giE~L~i~T~D~~~~Ps~~~i~~a   98 (183)
T KOG1719|consen   27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP---SNLWKN-----YGIEFLVIPTRDYTGAPSLENIQKA   98 (183)
T ss_pred             eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh---hHHHHh-----ccceeEEeccccccCCCCHHHHHHH
Confidence            46677888988766788899999999999999988765332   223333     4899999999997766656678889


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccceE
Q 040474           85 ISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELV  162 (283)
Q Consensus        85 ~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~~v  162 (283)
                      ++||++-. ..|+.|+|||+||.+||+|+++||||.+.+|++++|+++++++||.+    .++.+|++.+.+|.++.+
T Consensus        99 VeFi~k~a-sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~V----lL~~~Qw~~l~ef~~~~~  171 (183)
T KOG1719|consen   99 VEFIHKNA-SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRV----LLRPAQWDVLKEFYKQIV  171 (183)
T ss_pred             HHHHHhcc-ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcce----eecHHHHHHHHHHHHHHH
Confidence            99999885 67889999999999999999999999999999999999999999997    678899999988877664

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=99.89  E-value=2.7e-22  Score=163.93  Aligned_cols=141  Identities=16%  Similarity=0.157  Sum_probs=109.7

Q ss_pred             ccccccCCeEEcCCCCCc---ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHh
Q 040474            2 TYNFIRPDLIVGSCLQTP---EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLR   78 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~---~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~   78 (283)
                      .++++...+++...|..+   .+++.|++.||++||+++.+..      +.+.+.     ..|+.|+++|++|...+...
T Consensus        10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~------~~~~~~-----~~gi~~~~~p~~D~~~P~~~   78 (166)
T PTZ00242         10 QIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY------DAELLE-----KNGIEVHDWPFDDGAPPPKA   78 (166)
T ss_pred             ceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC------CHHHHH-----HCCCEEEecCCCCCCCCCHH
Confidence            367889999998887432   4568899999999999976431      222222     25899999999998766533


Q ss_pred             hhHHHHHHHHHHHHH---cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhh
Q 040474           79 MRLPAVISKLYKAIN---RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILT  155 (283)
Q Consensus        79 ~~~~~~~~~i~~~l~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~  155 (283)
                       .+...+++++..+.   ..|++|+|||.+|+||||+++++|||...++++.+|+++|+++||..     +...|+.++.
T Consensus        79 -~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-----i~~~Q~~~l~  152 (166)
T PTZ00242         79 -VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-----INQTQLQFLK  152 (166)
T ss_pred             -HHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-----chHHHHHHHH
Confidence             45667777777653   24889999999999999999999999988999999999999999975     3456777777


Q ss_pred             cccc
Q 040474          156 GLRK  159 (283)
Q Consensus       156 ~~~~  159 (283)
                      .|.+
T Consensus       153 ~~~~  156 (166)
T PTZ00242        153 KYKP  156 (166)
T ss_pred             HHHH
Confidence            6654

>PTZ00393 protein tyrosine phosphatase; Provisional

Probab=99.85  E-value=7.9e-21  Score=160.67  Aligned_cols=133  Identities=19%  Similarity=0.244  Sum_probs=103.1

Q ss_pred             eEEcCCCCC---cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHH
Q 040474           10 LIVGSCLQT---PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVIS   86 (283)
Q Consensus        10 l~lG~~p~~---~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~   86 (283)
                      +.+-..|..   ...++.|++.||++||++++...      +...+..     .||.++++|++|...|+.. .+.+.++
T Consensus        94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Y------d~~~~~~-----~GI~~~~lpipDg~aPs~~-~i~~~l~  161 (241)
T PTZ00393         94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTY------NDGEITS-----AGINVHELIFPDGDAPTVD-IVSNWLT  161 (241)
T ss_pred             EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC------CHHHHHH-----cCCeEEEeecCCCCCCCHH-HHHHHHH
Confidence            444455522   24558899999999999976431      2222222     5999999999998887643 5677788


Q ss_pred             HHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccce
Q 040474           87 KLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKEL  161 (283)
Q Consensus        87 ~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~~  161 (283)
                      +++..+ +.|++|+|||++|+||||+++++|||. .|+++++|+++||++||.+.+     ..|..++..|.++.
T Consensus       162 ~i~~~l-~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAIn-----~~Q~~fL~~y~~~~  229 (241)
T PTZ00393        162 IVNNVI-KNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAIN-----KRQLQFLKAYKKKK  229 (241)
T ss_pred             HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhc
Confidence            888776 567899999999999999999999995 899999999999999998643     45777888777653

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.82  E-value=6.6e-20  Score=132.63  Aligned_cols=80  Identities=33%  Similarity=0.657  Sum_probs=73.6

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEee-ecCCcceeecCCCCCcce
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWT-CNKYELVSSPNKDGHVNN  238 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~-~d~~~~~~~~~~~G~~nn  238 (283)
                      .+++|+|..+.+++|+|+|+|++|+ ..+|.+. ++|.|++++.|+||.|+|||+|||.|. .||.++....|++|+.|+
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~-~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~   79 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE-GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNA   79 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC-CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccce
Confidence            4789999999999999999999998 6899986 468999999999999999999999998 999999877899999999


Q ss_pred             EEE
Q 040474          239 YVQ  241 (283)
Q Consensus       239 ~i~  241 (283)
                      +|+
T Consensus        80 v~~   82 (82)
T cd02861          80 VFV   82 (82)
T ss_pred             EcC
Confidence            974

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]

Probab=99.82  E-value=2.4e-19  Score=146.74  Aligned_cols=137  Identities=23%  Similarity=0.312  Sum_probs=102.0

Q ss_pred             ccccccCCeEEcCCCCC--cc-------------cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEE
Q 040474            2 TYNFIRPDLIVGSCLQT--PE-------------DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIR   66 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~--~~-------------~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~   66 (283)
                      +|+||+|+.+++=..+.  +.             -+..++.++++.++.|....      .+...+     ...||.+++
T Consensus        52 dfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~------yd~~~f-----~~~Gi~h~~  120 (225)
T KOG1720|consen   52 DFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRL------YDAKRF-----TDAGIDHHD  120 (225)
T ss_pred             CcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCC------CChHHh-----cccCceeee
Confidence            78999999655433111  11             13456788899999887654      122221     125899999


Q ss_pred             EeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC---CCh
Q 040474           67 AEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF---PKL  143 (283)
Q Consensus        67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~---pn~  143 (283)
                      +|++|...|++. .+.+.++.++.++ + +++|.|||++|.||||++++||||+.+||++.+|+.+||.+||..   |..
T Consensus       121 l~f~Dg~tP~~~-~v~~fv~i~e~~~-~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ  197 (225)
T KOG1720|consen  121 LFFADGSTPTDA-IVKEFVKIVENAE-K-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQ  197 (225)
T ss_pred             eecCCCCCCCHH-HHHHHHHHHHHHH-h-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHH
Confidence            999999888755 5566777777786 3 899999999999999999999999999999999999999999974   544


Q ss_pred             hHHHHhHHh
Q 040474          144 DAIKSATAD  152 (283)
Q Consensus       144 ~~~~~~~~~  152 (283)
                      ..+.-.|.+
T Consensus       198 ~~l~~~q~~  206 (225)
T KOG1720|consen  198 HKLLHKQRD  206 (225)
T ss_pred             HHHHHHHHH
Confidence            444444444

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=99.76  E-value=2.8e-18  Score=137.21  Aligned_cols=118  Identities=25%  Similarity=0.302  Sum_probs=77.9

Q ss_pred             CCeEEcCCCCC---------cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHh
Q 040474            8 PDLIVGSCLQT---------PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLR   78 (283)
Q Consensus         8 ~~l~lG~~p~~---------~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~   78 (283)
                      ..|.++.+|..         ..|++.|+..|++.||++.+..|...++++  .+.+.+.. .|+.++|+||+|...|+..
T Consensus        41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp--~L~~~~~~-~Gi~~~h~PI~D~~aPd~~  117 (168)
T PF05706_consen   41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVP--DLGEAAQA-RGIAWHHLPIPDGSAPDFA  117 (168)
T ss_dssp             SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-T--THHHHHHH-TT-EEEE----TTS---HH
T ss_pred             ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCc--cHHHHHHH-cCCEEEecCccCCCCCCHH
Confidence            35788888743         357789999999999999999999888874  33344444 5999999999999999865


Q ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh-CCCHHHHH
Q 040474           79 MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL-GYKLNEAH  130 (283)
Q Consensus        79 ~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-~~~~~~A~  130 (283)
                      . +.++++.+...+ ++|++|+|||++|+||||++++++|+... .+++++|+
T Consensus       118 ~-~~~i~~eL~~~L-~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI  168 (168)
T PF05706_consen  118 A-AWQILEELAARL-ENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI  168 (168)
T ss_dssp             H-HHHHHHHHHHHH-HTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred             H-HHHHHHHHHHHH-HcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence            3 446778888887 56889999999999999999999988543 48898886

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.74  E-value=2.3e-17  Score=134.37  Aligned_cols=125  Identities=17%  Similarity=0.280  Sum_probs=80.2

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh---H
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD---L   77 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~---~   77 (283)
                      .||..|.++||.|++| .+.++..|+++|+++||+|+.+...       .+...++.. .++.++++++.....+.   .
T Consensus         5 ~nF~~V~~~vYRS~~P-~~~n~~fL~~L~LKTII~L~~e~~~-------~~~~~f~~~-~~I~l~~~~~~~~~~~~~~~~   75 (164)
T PF03162_consen    5 LNFGMVEPGVYRSAQP-TPANFPFLERLGLKTIINLRPEPPS-------QDFLEFAEE-NGIKLIHIPMSSSKDPWVPIS   75 (164)
T ss_dssp             TT-EEEETTEEEESS---HHHHHHHHHHT-SEEEE--SS----------HHHHHHHHH-TT-EEEE-------GGG----
T ss_pred             ccccCCCCCccCCCCC-ChhhHHHHHHCCCceEEEecCCCCC-------HHHHHHHhh-cCceEEEeccccccCccccCC
Confidence            4899999999999997 8999999999999999999976522       233333344 69999999997655421   1


Q ss_pred             hhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474           78 RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP  138 (283)
Q Consensus        78 ~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~  138 (283)
                      ...+.++++.|   ++....+|||||..|..|||++++||- +.+||++..|++-.+..-.
T Consensus        76 ~~~v~~aL~~i---ld~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~  132 (164)
T PF03162_consen   76 EEQVAEALEII---LDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG  132 (164)
T ss_dssp             HHHHHHHHHHH---H-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHH---hCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC
Confidence            22344444443   344457999999999999999999998 7899999999988876443

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=99.67  E-value=1.7e-15  Score=119.87  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=91.5

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++.+|.+.+|+++.+ ++.+++.|+++||++|||++.+.|.+.... .....+.+ ...|+.|+++|+.......     
T Consensus         1 ~~~~i~~~~~~s~ql-t~~d~~~L~~~GiktVIdlR~~~E~~~~p~-~~~~~~~a-~~~gl~y~~iPv~~~~~~~-----   72 (135)
T TIGR01244         1 DIRKLTEHLYVSPQL-TKADAAQAAQLGFKTVINNRPDREEESQPD-FAQIKAAA-EAAGVTYHHQPVTAGDITP-----   72 (135)
T ss_pred             CceEcCCCeeEcCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCCCC-HHHHHHHH-HHCCCeEEEeecCCCCCCH-----
Confidence            357899999999997 999999999999999999998776543221 11212222 2359999999997543211     


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCC
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~  139 (283)
                       +.+..+.+.+....++||+||++|. ||+++.+.++. ..|++.+++++..+...-.
T Consensus        73 -~~v~~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~~~~~i~~~~~~~G~~  127 (135)
T TIGR01244        73 -DDVETFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQA-AEGVPVEEIVRRAQAAGYD  127 (135)
T ss_pred             -HHHHHHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHH-HcCCCHHHHHHHHHHcCCC
Confidence             1223333444444688999999999 99887766665 5899999999998876544

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=99.66  E-value=4.4e-16  Score=129.19  Aligned_cols=79  Identities=30%  Similarity=0.421  Sum_probs=68.6

Q ss_pred             CCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhC-CCHHHHHHHHHhhC
Q 040474           59 YDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLG-YKLNEAHQLLLSKR  137 (283)
Q Consensus        59 ~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~~v~~~r  137 (283)
                      ..++.++++|+.|...+++ ..+.+++++|..++ +.|++|+|||.+|+|||||+++||||.+.+ +..++|+..++.+|
T Consensus        70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~-~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r  147 (180)
T COG2453          70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEAL-SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR  147 (180)
T ss_pred             cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHH-hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence            4689999999999999987 58999999999998 556799999999999999999999999854 55777777777777


Q ss_pred             CC
Q 040474          138 PC  139 (283)
Q Consensus       138 ~~  139 (283)
                      +.
T Consensus       148 ~~  149 (180)
T COG2453         148 PG  149 (180)
T ss_pred             Cc
Confidence            73

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1e-15  Score=135.20  Aligned_cols=97  Identities=28%  Similarity=0.477  Sum_probs=84.5

Q ss_pred             ccceEEEEeeCCCcceEEEeeccCCCCccccceeecC-CCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCc
Q 040474          158 RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKE-QGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHV  236 (283)
Q Consensus       158 ~~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~-~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~  236 (283)
                      ...++.|+|..++ +.|++.|||.+|..++++.+... .|.|.+.++|++|.|+|||+|||+|.+|++.|+. .|..|+.
T Consensus        78 ~~~pvvi~W~~gg-~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta-~d~~Gn~  155 (289)
T KOG1616|consen   78 QGRPTVIRWSQGG-KEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA-EDSLGNL  155 (289)
T ss_pred             cCCceEEEecCCC-ceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCccc-ccccCCc
Confidence            3479999999997 99999999999999999998643 2349999999999999999999999999999998 5999999


Q ss_pred             ceEEEeccCC--CcchHHHhhc
Q 040474          237 NNYVQVDDAP--SSVSEALRNR  256 (283)
Q Consensus       237 nn~i~v~~~~--~~~~~~~~~~  256 (283)
                      ||+++|.+..  ....++++..
T Consensus       156 ~N~i~v~~~~~v~~~~~~l~~~  177 (289)
T KOG1616|consen  156 NNILEVQDPDEVFEVFQALEED  177 (289)
T ss_pred             ccceEecCccccchhhhhhhhh
Confidence            9999999966  5555665544

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=99.62  E-value=3.8e-15  Score=113.02  Aligned_cols=104  Identities=21%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      +|.+|.+.++++++| ++++++.|++.|+++|||++++.|.+.. .......+.+.. .|+.|+|+|+.... ..     
T Consensus         1 di~~i~~~~~vs~Q~-~~~d~~~la~~GfktVInlRpd~E~~~q-p~~~~~~~~a~~-~Gl~y~~iPv~~~~-~~-----   71 (110)
T PF04273_consen    1 DIRQISDDLSVSGQP-SPEDLAQLAAQGFKTVINLRPDGEEPGQ-PSSAEEAAAAEA-LGLQYVHIPVDGGA-IT-----   71 (110)
T ss_dssp             --EEEETTEEEECS---HHHHHHHHHCT--EEEE-S-TTSTTT--T-HHCHHHHHHH-CT-EEEE----TTT--------
T ss_pred             CCEecCCCeEECCCC-CHHHHHHHHHCCCcEEEECCCCCCCCCC-CCHHHHHHHHHH-cCCeEEEeecCCCC-CC-----
Confidence            578999999999997 9999999999999999999988764321 123333444444 69999999997533 22     


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL  115 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~  115 (283)
                      .+.++.+.+.+.+..++||+||+.|. ||+++.+
T Consensus        72 ~~~v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~  104 (110)
T PF04273_consen   72 EEDVEAFADALESLPKPVLAHCRSGT-RASALWA  104 (110)
T ss_dssp             HHHHHHHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence            22334445556566789999999997 9966544

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]

Probab=99.53  E-value=2e-13  Score=104.25  Aligned_cols=120  Identities=24%  Similarity=0.315  Sum_probs=89.9

Q ss_pred             cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh--HhhhHHHHHHHHHHHHHcCCCE
Q 040474           21 DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD--LRMRLPAVISKLYKAINRNGGV   98 (283)
Q Consensus        21 ~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~--~~~~~~~~~~~i~~~l~~~~~~   98 (283)
                      -++.|+++|+++||-+++..-      +....     +.+||..+..|++|...+.  +.+.+-+.+..  ...+..|..
T Consensus        33 fieELkKygvttvVRVCe~TY------dt~~l-----ek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~--~f~e~p~~c   99 (173)
T KOG2836|consen   33 FIEELKKYGVTTVVRVCEPTY------DTTPL-----EKEGITVLDWPFDDGAPPPNQVVDDWLSLVKT--KFREEPGCC   99 (173)
T ss_pred             HHHHHHhcCCeEEEEeccccc------CCchh-----hhcCceEeecccccCCCCchHHHHHHHHHHHH--HHhhCCCCe
Confidence            357899999999999987651      11111     2369999999999876554  11222222221  222457888


Q ss_pred             EEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhcccc
Q 040474           99 TYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRK  159 (283)
Q Consensus        99 VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~  159 (283)
                      |-|||.+|+||++.+++.-|+ ..||..++|++++|++|..     ++.+.|..|++.+..
T Consensus       100 vavhcvaglgrapvlvalali-e~gmkyedave~ir~krrg-----a~n~kql~~lekyrp  154 (173)
T KOG2836|consen  100 VAVHCVAGLGRAPVLVALALI-EAGMKYEDAVEMIRQKRRG-----AINSKQLLYLEKYRP  154 (173)
T ss_pred             EEEEeecccCcchHHHHHHHH-HccccHHHHHHHHHHHhhc-----cccHHHHHHHHHhCc
Confidence            999999999999998888887 8999999999999999986     578889999988754

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.52  E-value=4e-13  Score=100.58  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=95.6

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      |++.+|.+.+.+++++ +..|+..++.+|++.|||.+++.|.+. .....++...+.. .|+.|.++|+.-.....    
T Consensus         1 M~i~~I~d~lsVsgQi-~~~D~~~iaa~GFksiI~nRPDgEe~~-QP~~~~i~~aa~~-aGl~y~~iPV~~~~iT~----   73 (130)
T COG3453           1 MDIRRINDRLSVSGQI-SPADIASIAALGFKSIICNRPDGEEPG-QPGFAAIAAAAEA-AGLTYTHIPVTGGGITE----   73 (130)
T ss_pred             CCceecccceeecCCC-CHHHHHHHHHhccceecccCCCCCCCC-CCChHHHHHHHHh-cCCceEEeecCCCCCCH----
Confidence            7899999999999997 999999999999999999999887633 2334555555444 69999999997644432    


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHh
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLS  135 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~  135 (283)
                        ..++.+.+++.+.+++||.||+.|- || +.+...--...||+.+++..+-++
T Consensus        74 --~dV~~f~~Al~eaegPVlayCrsGt-Rs-~~ly~~~~~~~gm~~de~~a~g~a  124 (130)
T COG3453          74 --ADVEAFQRALDEAEGPVLAYCRSGT-RS-LNLYGLGELDGGMSRDEIEALGQA  124 (130)
T ss_pred             --HHHHHHHHHHHHhCCCEEeeecCCc-hH-HHHHHHHHHhcCCCHHHHHHHHHh
Confidence              3456667777777899999999995 98 444444446789999988776554

>PLN02727 NAD kinase

Probab=99.41  E-value=1.7e-12  Score=127.16  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             CeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHH
Q 040474            9 DLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKL   88 (283)
Q Consensus         9 ~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i   88 (283)
                      .+|++++| +++++++|++.||++|||++++.+.  .+....+..+.+.. .|++|+++|+.+...+.. +.+.++.+.+
T Consensus       262 ~~~rsgQp-spe~la~LA~~GfKTIINLRpd~E~--~q~~~~ee~eAae~-~GL~yVhIPVs~~~apt~-EqVe~fa~~l  336 (986)
T PLN02727        262 AFWRGGQV-TEEGLKWLLEKGFKTIVDLRAEIVK--DNFYQAAVDDAISS-GKIEVVKIPVEVRTAPSA-EQVEKFASLV  336 (986)
T ss_pred             eEEEeCCC-CHHHHHHHHHCCCeEEEECCCCCcC--CCchhHHHHHHHHH-cCCeEEEeecCCCCCCCH-HHHHHHHHHH
Confidence            47999997 9999999999999999999998762  22223334444444 699999999977555442 2344444444


Q ss_pred             HHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCH
Q 040474           89 YKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKL  126 (283)
Q Consensus        89 ~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~  126 (283)
                      .+   ...++||+||++|..|+|+++++|+.+.-+...
T Consensus       337 ~~---slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~  371 (986)
T PLN02727        337 SD---SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE  371 (986)
T ss_pred             Hh---hcCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence            22   346799999999999999999999997766543

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=99.25  E-value=2.5e-11  Score=99.23  Aligned_cols=117  Identities=26%  Similarity=0.378  Sum_probs=63.4

Q ss_pred             cccCC-eEEcCCCCC--cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh---Hh
Q 040474            5 FIRPD-LIVGSCLQT--PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD---LR   78 (283)
Q Consensus         5 ~I~~~-l~lG~~p~~--~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~---~~   78 (283)
                      .|-++ ||.++.+..  +++.+.|+++||++||+|+.+.|.....         .....++.++++|+.+.....   +.
T Consensus        15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p---------~~~~~g~~~~~~p~~~~~~~~~~~~~   85 (164)
T PF13350_consen   15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAP---------DPLIDGVQYVHIPIFGDDASSPDKLA   85 (164)
T ss_dssp             TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-------------TT-EEEE--SS-S-TTH-----
T ss_pred             eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCC---------CCCcCCceeeeecccccccccccccc
Confidence            45566 888887632  5678899999999999999877543211         012358999999997644331   10


Q ss_pred             ----------hhH-----------HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHH
Q 040474           79 ----------MRL-----------PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQ  131 (283)
Q Consensus        79 ----------~~~-----------~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~  131 (283)
                                ..+           .+.+..+.+.+.+..++||+||.+|+.|||.+++..| ...|.+.++.++
T Consensus        86 ~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~  158 (164)
T PF13350_consen   86 ELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA  158 (164)
T ss_dssp             -----HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence                      000           1234444444444557999999999999987766665 489998887765

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.19  E-value=1.5e-10  Score=84.11  Aligned_cols=77  Identities=27%  Similarity=0.438  Sum_probs=64.5

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECCEeeecCCcceeecCCCCCcce
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNN  238 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn  238 (283)
                      ..++|+.-.+.+++|.|.|+|++|. ..+|.+. ++|.|++++. |++|.|+|+|++||.++.||.++....+ .+..-|
T Consensus         6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~-~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~-~~~~~~   82 (85)
T cd02858           6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD-EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPG-RQVDTS   82 (85)
T ss_pred             CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC-CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeec-ccccce
Confidence            4688998888899999999999876 5789886 5899999984 8899999999999999999999988645 344433


Q ss_pred             E
Q 040474          239 Y  239 (283)
Q Consensus       239 ~  239 (283)
                      .
T Consensus        83 ~   83 (85)
T cd02858          83 G   83 (85)
T ss_pred             e
Confidence            3

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]

Probab=99.19  E-value=3e-10  Score=95.26  Aligned_cols=125  Identities=13%  Similarity=0.211  Sum_probs=94.5

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCC------c
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFD------A   74 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~------~   74 (283)
                      +||+-|.++||-|++| .+.++.+|+.++.+.||.|+.+...       +.-..++.. .+|.+.+|-+....      .
T Consensus        58 lnFs~V~~~lyRSg~P-~~~NfsFL~~L~LksIisL~pE~yp-------~~nl~f~~~-~~Ik~~~i~ie~~k~~~k~P~  128 (249)
T KOG1572|consen   58 LNFSMVDNGLYRSGFP-RPENFSFLKTLHLKSIISLCPEPYP-------EENLNFLES-NGIKLYQIGIEGEKDNKKEPF  128 (249)
T ss_pred             ccccccccceeecCCC-CccchHHHHHhhhheEEEecCCCCC-------hHHHHHHHh-cCceEEEEecccccccccCCC
Confidence            5899999999999997 9999999999999999999987621       122234444 68999999996433      1


Q ss_pred             hh-HhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 040474           75 FD-LRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP  138 (283)
Q Consensus        75 ~~-~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~  138 (283)
                      .+ ....+..+++.   .+...+.++||||..|..|+|+++.|.- +.++|++.-.++-.+..-.
T Consensus       129 ~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~  189 (249)
T KOG1572|consen  129 VNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAG  189 (249)
T ss_pred             CCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhcc
Confidence            22 22334555554   4445678999999999999999888876 7899998888776655444

>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity

Probab=99.18  E-value=1e-10  Score=87.54  Aligned_cols=78  Identities=18%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             EEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHHHHh------CCCHHHHHHHHH
Q 040474           63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMFWVL------GYKLNEAHQLLL  134 (283)
Q Consensus        63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~v~  134 (283)
                      .|.+.+++|...|+....+.+.++.+......  .+++|+|||.+|+||||+++++|++...      -.++.+++..+|
T Consensus         4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir   83 (105)
T smart00012        4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR   83 (105)
T ss_pred             EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            35556677776665444566666666655422  2679999999999999999999988654      267889999999


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      ..|+..
T Consensus        84 ~~r~~~   89 (105)
T smart00012       84 KQRPGM   89 (105)
T ss_pred             hhhhhh
Confidence            999974

Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.

>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif

Probab=99.18  E-value=1e-10  Score=87.54  Aligned_cols=78  Identities=18%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             EEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHHHHh------CCCHHHHHHHHH
Q 040474           63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMFWVL------GYKLNEAHQLLL  134 (283)
Q Consensus        63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~~------~~~~~~A~~~v~  134 (283)
                      .|.+.+++|...|+....+.+.++.+......  .+++|+|||.+|+||||+++++|++...      -.++.+++..+|
T Consensus         4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir   83 (105)
T smart00404        4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR   83 (105)
T ss_pred             EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            35556677776665444566666666655422  2679999999999999999999988654      267889999999


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      ..|+..
T Consensus        84 ~~r~~~   89 (105)
T smart00404       84 KQRPGM   89 (105)
T ss_pred             hhhhhh
Confidence            999974

>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]

Probab=99.06  E-value=3.3e-11  Score=111.62  Aligned_cols=121  Identities=20%  Similarity=0.293  Sum_probs=86.2

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCc--------------EEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEE
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVK--------------TIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIR   66 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~--------------~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~   66 (283)
                      |+++.|+++|.+.++|  +...+.+.++.+.              .|.||+.+.-   +...         .. .-....
T Consensus        13 LDltYIT~rIIamsfP--a~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~---yd~~---------~f-~g~V~~   77 (434)
T KOG2283|consen   13 LDLTYITSRIIAMSFP--AEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERL---YDPS---------RF-HGRVAR   77 (434)
T ss_pred             ccceeeeeeEEEEeCC--CCcchhhhcCCHHHHHHHHhhccCCceEEEecCcccc---CCcc---------cc-ccceee
Confidence            6889999999999998  3333333333332              3556664220   0000         01 123455


Q ss_pred             EeccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC-HHHHHHHHHhhC
Q 040474           67 AEIRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK-LNEAHQLLLSKR  137 (283)
Q Consensus        67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-~~~A~~~v~~~r  137 (283)
                      ++++|...|.+. .+..+|+-++..+.+ ....|.|||++|++|||++++||||+..... +++|+.+.-.+|
T Consensus        78 ~~~~Dh~~P~L~-~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR  149 (434)
T KOG2283|consen   78 FGFDDHNPPPLE-LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR  149 (434)
T ss_pred             cCCCCCCCCcHH-HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence            899999888866 556678888888754 4567999999999999999999999776665 999999999999

>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways

Probab=98.96  E-value=3e-09  Score=91.64  Aligned_cols=79  Identities=22%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             eEEEEEe-ccCCCchhHhhhHHHHHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHH
Q 040474           62 IQHIRAE-IRDFDAFDLRMRLPAVISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLL  134 (283)
Q Consensus        62 i~~~~ip-i~D~~~~~~~~~~~~~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~  134 (283)
                      +.++++. ++|...++....+.++++.+..... ..+++|+|||.+|+||||++++++++...     .+++.+|+..+|
T Consensus       130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR  209 (231)
T cd00047         130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR  209 (231)
T ss_pred             EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3444433 5666655544445555555554431 13679999999999999999999876443     589999999999


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      +.|+..
T Consensus       210 ~~R~~~  215 (231)
T cd00047         210 SQRPGM  215 (231)
T ss_pred             hccccc
Confidence            999975

The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.

>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain

Probab=98.86  E-value=7.7e-09  Score=90.62  Aligned_cols=73  Identities=21%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|...|.....+.+.+..+.......+++|+|||.+|+||||++++++++..     ...++.+++..+|+.|+..
T Consensus       165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~  242 (258)
T smart00194      165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGM  242 (258)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccc
Confidence            445666664333455555555554322267999999999999999999987643     3689999999999999985

>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]

Probab=98.76  E-value=8.1e-08  Score=75.35  Aligned_cols=115  Identities=18%  Similarity=0.171  Sum_probs=77.1

Q ss_pred             HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccC-----CC-chhHhhhHHHHHHHHHHHHHcCC
Q 040474           23 DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRD-----FD-AFDLRMRLPAVISKLYKAINRNG   96 (283)
Q Consensus        23 ~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D-----~~-~~~~~~~~~~~~~~i~~~l~~~~   96 (283)
                      +.-.+.|-+++|++......  +..+. .       ...-.++.+-+.|     .+ ...-..+...+++|+++.  ...
T Consensus        26 e~~~rh~~t~mlsl~a~~t~--~~~pa-~-------~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w--p~~   93 (172)
T COG5350          26 ETAARHGPTHMLSLLAKGTY--FHRPA-V-------IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW--PRF   93 (172)
T ss_pred             HHHhhcCCceEEEeeccccc--ccCcc-c-------cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC--ccc
Confidence            44458999999999875321  11110 0       0001233333333     22 111235788899999888  345


Q ss_pred             CEEEEEcCCCCChhHHHHHH-HHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHh
Q 040474           97 GVTYVHCTAGLGRAPAVALA-YMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSA  149 (283)
Q Consensus        97 ~~VlVHC~~G~~RS~~v~~a-yLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~  149 (283)
                      .++||||.+|+|||.+++.. -|.....+...+..+.++..+|.. ||...+.-+
T Consensus        94 apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~  148 (172)
T COG5350          94 APLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIA  148 (172)
T ss_pred             cceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHH
Confidence            78999999999999875443 355578899999999999999998 999877653

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.76  E-value=4.5e-08  Score=69.99  Aligned_cols=68  Identities=34%  Similarity=0.557  Sum_probs=60.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCC-ceEEEEEEECCEeeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPE-GRYEYKYIVDGEWTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~-g~y~ykf~vdg~w~~d~~~~~~  228 (283)
                      +.++|++..+++++|.+.+.|++|...++|.+. .+|.|.+.+.+.+ +.|.|+|.|||.|..++.++..
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~-~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~   72 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV-EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKA   72 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC-CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhh
Confidence            468999999999999999999987677899876 5699999999887 9999999999999999988544

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK15375 pathogenicity island 1 effector protein StpP; Provisional

Probab=98.61  E-value=1.2e-07  Score=88.44  Aligned_cols=95  Identities=14%  Similarity=0.202  Sum_probs=60.9

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHHcC--------CCEEEEEcCCCCChhHHHHHHHHHHHhC-CCHHHHHH
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAINRN--------GGVTYVHCTAGLGRAPAVALAYMFWVLG-YKLNEAHQ  131 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~~~--------~~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~  131 (283)
                      +.++|+ .++|.+.++....+...++.+.......        ....+|||.+|+||||+++++++|...+ .++++.+.
T Consensus       423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~  502 (535)
T PRK15375        423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA  502 (535)
T ss_pred             EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence            333333 4578766543334555555554432111        1224799999999999999999986444 68999999


Q ss_pred             HHHhhCCC-CCChhHHHHhHHhhhhccccc
Q 040474          132 LLLSKRPC-FPKLDAIKSATADILTGLRKE  160 (283)
Q Consensus       132 ~v~~~r~~-~pn~~~~~~~~~~~~~~~~~~  160 (283)
                      .+|..|+. .    ....+|++.+.....+
T Consensus       503 dlR~qRng~M----VQt~eQy~~l~~~~~~  528 (535)
T PRK15375        503 DFRNSRNNRM----LEDASQFVQLKAMQAQ  528 (535)
T ss_pred             HHHhcCCccc----cccHHHHHHHHHHHHH
Confidence            99999987 3    2244666666554433

>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]

Probab=98.55  E-value=2.6e-07  Score=80.50  Aligned_cols=57  Identities=30%  Similarity=0.326  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~  140 (283)
                      ....+.-.+...+++||+||.+|+.|+|.++++|++...+.....+-++++..++..
T Consensus       124 ~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~  180 (249)
T COG2365         124 LVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE  180 (249)
T ss_pred             HHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence            334433343333489999999999999999999999777777778888888877764

>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B

Probab=98.52  E-value=2.3e-07  Score=74.52  Aligned_cols=63  Identities=24%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             HHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHH
Q 040474           54 EYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF  119 (283)
Q Consensus        54 ~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm  119 (283)
                      +......++.|++||+.|...|. ...|+..++++...  ..+..+.+||.+|.|||.+.++.|.|
T Consensus        85 ~~~~~~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~--p~~~~l~fhC~~G~GRTTt~Mv~~~l  147 (149)
T PF14566_consen   85 EELVEGNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL--PKDTWLHFHCQAGRGRTTTFMVMYDL  147 (149)
T ss_dssp             HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS---TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            33344579999999999987665 44677777777665  34678999999999999998888766

...

>PHA02742 protein tyrosine phosphatase; Provisional

Probab=98.42  E-value=9.5e-07  Score=79.26  Aligned_cols=45  Identities=27%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|+|||.+|+||||++++...+..     ...+..+++..+|+.|+..
T Consensus       229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~  278 (303)
T PHA02742        229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNC  278 (303)
T ss_pred             CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccc
Confidence            36999999999999999877765432     2457889999999999874

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.41  E-value=7.2e-07  Score=64.43  Aligned_cols=59  Identities=37%  Similarity=0.646  Sum_probs=48.8

Q ss_pred             ceEEEEeeCCCcceEEEeeccCC-CC-ccccceeecCCCeEEEEEe--cCCceEEEEEEECCE
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIG-WG-QRMPLTFDKEQGLWILKRE--LPEGRYEYKYIVDGE  218 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~-W~-~~~pl~~~~~~~~~~~~~~--l~~g~y~ykf~vdg~  218 (283)
                      ..++|+.-.+.+++|.|++.+++ |. +.++|.+..++|.|+++++  +++|.++|+|.|||.
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~   73 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGD   73 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence            48999999999999999999999 86 6689996446899999998  888888888888755

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>PHA02740 protein tyrosine phosphatase; Provisional

Probab=98.40  E-value=1.2e-06  Score=78.30  Aligned_cols=45  Identities=9%  Similarity=0.067  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|+|||.+|+||||++++.-.+.     ....++.+++..+|+.|+..
T Consensus       221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~  270 (298)
T PHA02740        221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGC  270 (298)
T ss_pred             CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccc
Confidence            4699999999999999988776543     23468899999999999985

>PHA02747 protein tyrosine phosphatase; Provisional

Probab=98.40  E-value=1.2e-06  Score=78.91  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=36.9

Q ss_pred             CEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           97 GVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        97 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      ++|+|||.+|+||||++++.-.+.     ....+..+++..+|+.|+..
T Consensus       230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~  278 (312)
T PHA02747        230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAG  278 (312)
T ss_pred             CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccc
Confidence            689999999999999988776432     23578899999999999985

>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=98.39  E-value=2.2e-06  Score=73.44  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=51.4

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|...|.....+..+++.+........++|+|||.+|.||||+++++.++..     ...+..+++..+|+.|+..
T Consensus       142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~  219 (235)
T PF00102_consen  142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGA  219 (235)
T ss_dssp             SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred             eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCc
Confidence            445555443233344444554444323568999999999999999888887633     2478999999999999985

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.38  E-value=2.9e-06  Score=63.25  Aligned_cols=71  Identities=24%  Similarity=0.423  Sum_probs=56.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEec--------CCc-eEEEEEEE-CCEe--eecCCcc
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKREL--------PEG-RYEYKYIV-DGEW--TCNKYEL  226 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l--------~~g-~y~ykf~v-dg~w--~~d~~~~  226 (283)
                      ..++|+--.+.+++|+|+|+|++|+ ...+|.+. +.|.|++.++.        +.| .|.|.+.. ||+|  +.||-+-
T Consensus         5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~-~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD-EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC-CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            4688999999999999999999998 35789986 58999999874        355 56666666 7887  5788877


Q ss_pred             eeecC
Q 040474          227 VSSPN  231 (283)
Q Consensus       227 ~~~~~  231 (283)
                      ..+.+
T Consensus        84 ~~~~~   88 (99)
T cd02854          84 YVTQD   88 (99)
T ss_pred             EEEeC
Confidence            66533

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PHA02746 protein tyrosine phosphatase; Provisional

Probab=98.33  E-value=2.4e-06  Score=77.26  Aligned_cols=44  Identities=27%  Similarity=0.278  Sum_probs=36.6

Q ss_pred             CEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           97 GVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        97 ~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      ++|+|||.+|+||||++++.-.+.     ...++..+++..+|..|+..
T Consensus       248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~  296 (323)
T PHA02746        248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSS  296 (323)
T ss_pred             CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccc
Confidence            689999999999999988765432     23578999999999999985

>PHA02738 hypothetical protein; Provisional

Probab=98.23  E-value=4.3e-06  Score=75.58  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|+|||.+|+||||++++.-.+..     ...+..+++..+|+.|+..
T Consensus       227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~  276 (320)
T PHA02738        227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYS  276 (320)
T ss_pred             CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhc
Confidence            36899999999999999766654322     2468889999999999985

>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2

Probab=98.00  E-value=0.00011  Score=69.01  Aligned_cols=131  Identities=17%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             cccCCeEEcCCCCCcccH----HHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCC--CchhHh
Q 040474            5 FIRPDLIVGSCLQTPEDV----DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDF--DAFDLR   78 (283)
Q Consensus         5 ~I~~~l~lG~~p~~~~~~----~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~--~~~~~~   78 (283)
                      .+..+||+|... ..-..    ..-....+..||+|.+......            .......++++|+...  +..++.
T Consensus       291 ~~~~~i~ig~~~-~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~------------~~~~~~~~L~l~i~~~K~gs~~LR  357 (451)
T PF04179_consen  291 PGTTGIYIGKIS-SNLAISKAQLPDLESEFDCVINCSESPTPKE------------SWPKSPKYLHLPIPSSKKGSRDLR  357 (451)
T ss_pred             cCCCCeEEeccC-CccccchhhccccCCCcCEEEEcCCCccccc------------ccCCCceEEeCcCCCCcccHHHHH
Confidence            346789999985 31111    1112567889999987653210            0124578999999764  345678


Q ss_pred             hhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC----------------HHHHHHHHHhhCCCC-
Q 040474           79 MRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK----------------LNEAHQLLLSKRPCF-  140 (283)
Q Consensus        79 ~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~----------------~~~A~~~v~~~r~~~-  140 (283)
                      ..|++++.|+...+.+ .+.+|||+|..|...|..+++|.|+..+...                ..+-+.+|-+.+|.+ 
T Consensus       358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aN  437 (451)
T PF04179_consen  358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDAN  437 (451)
T ss_pred             HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCC
Confidence            8899999999998854 3789999999999999999999999877541                234477777788776 


Q ss_pred             CChhHHHH
Q 040474          141 PKLDAIKS  148 (283)
Q Consensus       141 pn~~~~~~  148 (283)
                      |+++.+++
T Consensus       438 PSRaTLqs  445 (451)
T PF04179_consen  438 PSRATLQS  445 (451)
T ss_pred             CCHHHHHH
Confidence            88877765

4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups

>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]

Probab=98.00  E-value=2.2e-05  Score=78.44  Aligned_cols=76  Identities=16%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC-C
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF-P  141 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~-p  141 (283)
                      -++|.+.|+-...|.+.++.|....+..+.+|+|||.||+||||+++++=+|..     ..+..-+.+..+|..|-.. +
T Consensus      1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred             ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence            567777777666777777777666533356999999999999999776544322     2456778888888888764 4


Q ss_pred             Ch
Q 040474          142 KL  143 (283)
Q Consensus       142 n~  143 (283)
                      +.
T Consensus      1115 T~ 1116 (1144)
T KOG0792|consen 1115 TL 1116 (1144)
T ss_pred             ch
Confidence            43

>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]

Probab=97.91  E-value=1.6e-05  Score=72.56  Aligned_cols=112  Identities=20%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             ccHHHHHhc--CCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCC---chhHhhhHHHHHHHHHHHHHc
Q 040474           20 EDVDKLRQI--GVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFD---AFDLRMRLPAVISKLYKAINR   94 (283)
Q Consensus        20 ~~~~~L~~~--gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~l~~   94 (283)
                      ..+..|+.+  .+.-+++++.-.-  ++  +.+.     ....|+.|+.+......   .......|..+++-...-.+.
T Consensus        52 dl~~~l~~~~~~vgl~iDltnt~r--yy--~~~~-----~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~  122 (393)
T KOG2386|consen   52 DLFELLKEHNYKVGLKIDLTNTLR--YY--DKPE-----LEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKL  122 (393)
T ss_pred             HHHHHHHhcCceEEEEEeccceee--ee--cccc-----ccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccC
Confidence            344556544  4566777764321  11  1011     12357888876654332   122222344444443332235


Q ss_pred             CCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474           95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~  140 (283)
                      .+.-|+|||.+|++|++-++++|||...+++..+|++.+..+|+..
T Consensus       123 ~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g  168 (393)
T KOG2386|consen  123 DDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG  168 (393)
T ss_pred             CCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc
Confidence            6788999999999999999999999999999999999999999985

>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]

Probab=97.90  E-value=1.4e-05  Score=73.04  Aligned_cols=124  Identities=16%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             HHHHHhcCCcEEEEcCcCCCCCccCCC---hHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHH------HH
Q 040474           22 VDKLRQIGVKTIFCLQQDPDLEYFGVD---IIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYK------AI   92 (283)
Q Consensus        22 ~~~L~~~gI~~Vv~l~~~~e~~~~~~~---~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~------~l   92 (283)
                      ...++.+|+-+|=|+.+..-..+ -+.   ...+-+--....-..|+..-++|.+.|.-...   +++|+++      .+
T Consensus       373 e~~~e~~G~~~v~~v~E~~t~dY-~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~---vLnFLe~V~~rq~~l  448 (600)
T KOG0790|consen  373 EGALEEYGVMRVRNVKESDTHDY-TLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGG---VLNFLEEVNHRQESL  448 (600)
T ss_pred             ccchhhcCceEEEeccccccccc-eehheeeccccCCcchhhhhhhheeecccCCCcCCccH---HHHHHHHhhhhhccc
Confidence            34567788888877765432111 000   00000000000114566666777765542211   2233322      22


Q ss_pred             HcCCCEEEEEcCCCCChhHHHHHH-HHH---HHhC----CCHHHHHHHHHhhCCCCCChhHHHHhHHhhh
Q 040474           93 NRNGGVTYVHCTAGLGRAPAVALA-YMF---WVLG----YKLNEAHQLLLSKRPCFPKLDAIKSATADIL  154 (283)
Q Consensus        93 ~~~~~~VlVHC~~G~~RS~~v~~a-yLm---~~~~----~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~  154 (283)
                      - .-++|.|||.||+||||++++. .||   +..|    ++....+++||+.|...    ....||+.|+
T Consensus       449 ~-~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGm----VQTEaQYkFi  513 (600)
T KOG0790|consen  449 M-DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGM----VQTEAQYKFI  513 (600)
T ss_pred             c-ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcch----hhhHHhHHHH
Confidence            2 2469999999999999995443 333   3334    57889999999999874    2233555554

>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=97.85  E-value=1.8e-05  Score=67.82  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=34.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHHH
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYMF  119 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayLm  119 (283)
                      .+.|...++    +.+..+++......  +.++++|||.||+||||++++.-.+
T Consensus       192 nW~D~~~p~----i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l  241 (302)
T COG5599         192 NWVDFNVPD----IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL  241 (302)
T ss_pred             CccccCCcC----HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence            456777775    34456666555433  5789999999999999997766543

>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]

Probab=97.74  E-value=8.1e-05  Score=66.70  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=48.1

Q ss_pred             EEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHH-HHHHhCCC-HHHHHHHHHhhCCC
Q 040474           64 HIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAY-MFWVLGYK-LNEAHQLLLSKRPC  139 (283)
Q Consensus        64 ~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ay-Lm~~~~~~-~~~A~~~v~~~r~~  139 (283)
                      +++.-++|.+.+.....+.+.+..+...+....++++|||.+|+|||||+++.- |.+..+-+ ..+.+..|.+.|..
T Consensus       255 f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~  332 (374)
T KOG0791|consen  255 FHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA  332 (374)
T ss_pred             EEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence            445567788777434445555555555655567899999999999999977765 44443433 44555554444443

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.54  E-value=0.00099  Score=49.82  Aligned_cols=78  Identities=26%  Similarity=0.433  Sum_probs=54.5

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCc-eEEEEEEEC-CE--eeecCCcceeecCCC
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVD-GE--WTCNKYELVSSPNKD  233 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vd-g~--w~~d~~~~~~~~~~~  233 (283)
                      ..++|+--.+++++|.|.++|++|. ...+|.+....|.|.+.+. +++| .|.|++..+ |.  .+.||...... .. 
T Consensus        21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~-~~-   98 (106)
T cd02855          21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE-LR-   98 (106)
T ss_pred             CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE-eC-
Confidence            4588999999999999999999995 4568888655899999886 6666 455554444 33  35677776553 22 


Q ss_pred             CCcceE
Q 040474          234 GHVNNY  239 (283)
Q Consensus       234 G~~nn~  239 (283)
                      ...++|
T Consensus        99 ~~~~~~  104 (106)
T cd02855          99 PGTASI  104 (106)
T ss_pred             CCCeEE
Confidence            335544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.43  E-value=0.0007  Score=50.39  Aligned_cols=67  Identities=24%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-----ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-----eeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-----WTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-----w~~d~~~~~~  228 (283)
                      ..+.|+.-.+.+++|.|.. |++|.     ..+||.+ ..+|.|.+.+. +.+|.+ |+|.|+|.     ...||.....
T Consensus         8 ~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~-~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~   84 (100)
T cd02860           8 EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR-GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL   84 (100)
T ss_pred             CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec-CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence            5688988888889999987 77775     4678887 36899999987 556654 88888775     6889998877


Q ss_pred             e
Q 040474          229 S  229 (283)
Q Consensus       229 ~  229 (283)
                      .
T Consensus        85 ~   85 (100)
T cd02860          85 S   85 (100)
T ss_pred             e
Confidence            5

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.00036  Score=67.74  Aligned_cols=82  Identities=26%  Similarity=0.348  Sum_probs=63.6

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCceEEEEEEECCEe-----eecCCcceeecC
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEW-----TCNKYELVSSPN  231 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w-----~~d~~~~~~~~~  231 (283)
                      ...++|+.=.+.++.|.+.|+||+|+. +.+|...++.|.|.++++ +++| +.|||.+++..     +.||-.-... .
T Consensus        35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~-~  112 (628)
T COG0296          35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQE-V  112 (628)
T ss_pred             CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccC-C
Confidence            467899988888899999999999984 566666556899999998 9999 99999997653     7888877663 4


Q ss_pred             CCCCcceEEEe
Q 040474          232 KDGHVNNYVQV  242 (283)
Q Consensus       232 ~~G~~nn~i~v  242 (283)
                      +-++.+-|...
T Consensus       113 ~p~~aS~v~~~  123 (628)
T COG0296         113 GPHTASQVVDL  123 (628)
T ss_pred             CCCCcceecCC
Confidence            44444444443

>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=97.41  E-value=0.00046  Score=64.48  Aligned_cols=74  Identities=22%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             EEEEeccCCCchhHhhhHHHHHHHHH---HHHHcCCCEEEEEcCCCCChhHHHHHHH-HHHH--h---CCCHHHHHHHHH
Q 040474           64 HIRAEIRDFDAFDLRMRLPAVISKLY---KAINRNGGVTYVHCTAGLGRAPAVALAY-MFWV--L---GYKLNEAHQLLL  134 (283)
Q Consensus        64 ~~~ipi~D~~~~~~~~~~~~~~~~i~---~~l~~~~~~VlVHC~~G~~RS~~v~~ay-Lm~~--~---~~~~~~A~~~v~  134 (283)
                      |+...++|...++.   ...++.++.   ...+...++++|||.+|+||||++++.- .+..  .   .....+.+..+|
T Consensus       267 ~~~~~WPd~~~p~~---~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR  343 (415)
T KOG0789|consen  267 YHYINWPDHGAPDS---VKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIR  343 (415)
T ss_pred             EeeCCCccccCCcc---hHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            33344556655442   233444443   2222235799999999999999988655 2222  2   234778888888


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      ..|+..
T Consensus       344 ~qR~~~  349 (415)
T KOG0789|consen  344 YQRPGA  349 (415)
T ss_pred             HHhhhc
Confidence            888864

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.39  E-value=0.0012  Score=50.92  Aligned_cols=46  Identities=30%  Similarity=0.657  Sum_probs=38.2

Q ss_pred             cceEEEeec---cCCCC--ccccceeec-CCCeEEEEEecCCc-eEEEEEEEC
Q 040474          171 CTSVEISGI---DIGWG--QRMPLTFDK-EQGLWILKRELPEG-RYEYKYIVD  216 (283)
Q Consensus       171 ~~~v~l~Gs---f~~W~--~~~pl~~~~-~~~~~~~~~~l~~g-~y~ykf~vd  216 (283)
                      .+++.|+|+   +.+|+  ...+|.+.. ..+.|.+.+.||++ .++|||++.
T Consensus        15 ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814          15 GEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             CCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            489999998   88998  556887752 45789999999998 799999993

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.08  E-value=0.0027  Score=63.09  Aligned_cols=77  Identities=23%  Similarity=0.367  Sum_probs=58.6

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEE---CCEe--eecCCcceeecCC
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV---DGEW--TCNKYELVSSPNK  232 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v---dg~w--~~d~~~~~~~~~~  232 (283)
                      ..++|+--.+.+++|.|+|+|++|+ ...||.+. .+|.|++.++ +.+|. .|||.|   ||.+  ..||.+-..+.+ 
T Consensus       138 ~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~-~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~~~e~~-  214 (730)
T PRK12568        138 PGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR-IGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVARQTELP-  214 (730)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCccceecccC-CCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcceEeecC-
Confidence            4678988888889999999999998 45788876 6899999996 77773 567777   7876  468888876532 


Q ss_pred             CCCcceEE
Q 040474          233 DGHVNNYV  240 (283)
Q Consensus       233 ~G~~nn~i  240 (283)
                       +...++|
T Consensus       215 -p~~asvV  221 (730)
T PRK12568        215 -PATASVV  221 (730)
T ss_pred             -CCCCeEE
Confidence             3444544

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=96.98  E-value=0.0058  Score=45.67  Aligned_cols=56  Identities=29%  Similarity=0.407  Sum_probs=42.9

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE  218 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~  218 (283)
                      ..+.|+.-.+.+++|.|.. ++++.  ..++|.+. .+|.|.+.+. +.+|. .|+|.|||.
T Consensus         9 ~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~-~~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856           9 EGCNFAVHSENATRIELCL-FDEDGSETRLPLTEE-YGGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             CCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc-cCCEEEEEECCCCCCC-EEEEEECCc
Confidence            4578887777789999988 44553  45788765 5899999985 66665 799999993

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=96.90  E-value=0.0041  Score=45.84  Aligned_cols=55  Identities=33%  Similarity=0.651  Sum_probs=41.7

Q ss_pred             eEEEEeeC--CCcceEEEeeccC---CCC--ccccceeec---CCCeEEEEEecCCc-eEEEEEEE
Q 040474          161 LVTFSWKG--KNCTSVEISGIDI---GWG--QRMPLTFDK---EQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       161 ~v~f~w~~--~g~~~v~l~Gsf~---~W~--~~~pl~~~~---~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .|+|.-..  ...+.|.|+||..   +|+  ..++|....   ....|++++.||.| .++|||++
T Consensus         3 ~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    3 SVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            35555422  2239999999885   798  578888753   34789999999998 59999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.85  E-value=0.0063  Score=63.71  Aligned_cols=69  Identities=22%  Similarity=0.428  Sum_probs=53.9

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEEC---CEe--eecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD---GEW--TCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd---g~w--~~d~~~~~~~  229 (283)
                      ..+.|.--.+.++.|.|+|+||+|+ ...+|.+....|.|.+.++ +.+|. .|||.|+   |.|  ..||..-..+
T Consensus       638 ~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~~~e  713 (1224)
T PRK14705        638 DGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAFGTE  713 (1224)
T ss_pred             CeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccccccc
Confidence            4678988888899999999999998 4568887556799999886 88885 5778784   555  5677766554

>PRK12313 glycogen branching enzyme; Provisional

Probab=96.85  E-value=0.0058  Score=60.47  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=53.8

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCc-eEEEEEEE-CCEe--eecCCcceee
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEG-RYEYKYIV-DGEW--TCNKYELVSS  229 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~v-dg~w--~~d~~~~~~~  229 (283)
                      .++|+--.+.+++|.|+|+|++|+ ...||.+. .+|.|.+.+. +.+| .|.|++.. ||.|  ..||......
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR-ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccccccccc-CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            789999999999999999999998 45788876 6799999997 4555 57777654 5775  5688777664

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.82  E-value=0.0045  Score=45.41  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=35.8

Q ss_pred             ceEEEeec---cCCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          172 TSVEISGI---DIGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gs---f~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      +++.|+|+   +++|+  ..++|... +++.|.+++.||++ .++|||++
T Consensus        15 e~l~v~G~~~~lG~W~~~~a~~l~~~-~~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808          15 QNVYVVGNVPELGNWSPANAVALSAA-TYPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CEEEEEeCcHHhCCCChhhCccCCCC-CCCCEEEEEEeCCCCeEEEEEEE
Confidence            89999995   78998  34688765 46789999999987 69999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.79  E-value=0.0063  Score=46.73  Aligned_cols=58  Identities=29%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-----ccccceeec--CCCeEEEEEe-cCCceEEEEEEECCEe
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDK--EQGLWILKRE-LPEGRYEYKYIVDGEW  219 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~--~~~~~~~~~~-l~~g~y~ykf~vdg~w  219 (283)
                      ..+.|+.-.+.+++|.|.. |++|+     ..++|.+..  .+|.|.+.+. +.+|. .|+|.|+|.|
T Consensus         7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~   72 (119)
T cd02852           7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPF   72 (119)
T ss_pred             CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence            4578887788789999998 77765     245676542  2689999886 77886 6999999854

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.79  E-value=0.0083  Score=60.30  Aligned_cols=70  Identities=29%  Similarity=0.534  Sum_probs=55.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCc-eEEEEEEEC-CEe--eecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVD-GEW--TCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vd-g~w--~~d~~~~~~~  229 (283)
                      ..++|+--.+.+++|.|+|+|++|+. ..+|.+..++|.|.+.+. +++| .|.|++..+ |.+  ..||..-...
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~  206 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAE  206 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEe
Confidence            46899999999999999999999973 478988656899999886 6777 677777665 454  5677766654

>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=96.69  E-value=0.0028  Score=61.26  Aligned_cols=78  Identities=21%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             EEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHH-HHH-----hCCCHHHHHHHHHhh
Q 040474           63 QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYM-FWV-----LGYKLNEAHQLLLSK  136 (283)
Q Consensus        63 ~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayL-m~~-----~~~~~~~A~~~v~~~  136 (283)
                      .++.+.+++.+.+.....+.+.-+.+.+..+-+..+|+|||..|-||||+-++.=+ +.+     ..++....++.+|..
T Consensus       894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ  973 (1004)
T KOG0793|consen  894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ  973 (1004)
T ss_pred             eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence            35566778887777665554444445555444456899999999999998433322 211     235777789999999


Q ss_pred             CCCC
Q 040474          137 RPCF  140 (283)
Q Consensus       137 r~~~  140 (283)
                      |+..
T Consensus       974 R~Gm  977 (1004)
T KOG0793|consen  974 RPGM  977 (1004)
T ss_pred             CCcc
Confidence            9974

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.65  E-value=0.015  Score=43.22  Aligned_cols=56  Identities=27%  Similarity=0.358  Sum_probs=39.3

Q ss_pred             ceEEEEeeCC---CcceEEEee---ccCCCCcc-ccceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGK---NCTSVEISG---IDIGWGQR-MPLTFD--KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~---g~~~v~l~G---sf~~W~~~-~pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .+|+|.-...   ..+++.|+|   .+.+|+.. .++...  ...+.|.+.++||+| .++|||++
T Consensus         3 v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           3 VPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             eEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4667765331   238999999   56789742 233332  235789999999999 59999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.60  E-value=0.0087  Score=59.10  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCCc-cccceeecCCCeEEEEEe-cCCceEEEEEEECC---Ee--eecCCcceeecCCC
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDG---EW--TCNKYELVSSPNKD  233 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~~-~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg---~w--~~d~~~~~~~~~~~  233 (283)
                      .++|+--.+.+++|.|+|+|++|+. ..||.+. +.|.|.+.++ +.+| ..|||.|++   .+  +.||.+-....+  
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~-~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~~~--  114 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL-DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFEVR--  114 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCccccccccccc-CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEecC--
Confidence            5899988999999999999999984 4788876 5799999986 4555 468888864   44  678887766433  


Q ss_pred             CCcceEE
Q 040474          234 GHVNNYV  240 (283)
Q Consensus       234 G~~nn~i  240 (283)
                      +...++|
T Consensus       115 ~~~~svv  121 (639)
T PRK14706        115 PNTASII  121 (639)
T ss_pred             CCCceEE
Confidence            3445554

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.54  E-value=0.018  Score=41.38  Aligned_cols=64  Identities=17%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEEC-CEeeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVD-GEWTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vd-g~w~~d~~~~~~  228 (283)
                      ..++|..-.+.+++|.|....  |. .++|.+. ++|.|.+.+...+|. .|+|.|+ |..+.||.+...
T Consensus         8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~-~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~   72 (85)
T cd02853           8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD-GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ   72 (85)
T ss_pred             CCEEEEEeCCCCCEEEEEecC--CC-cccCccC-CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence            568899888889999999643  43 5788875 579999998733775 4666666 567889998865

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.46  E-value=0.048  Score=40.40  Aligned_cols=43  Identities=26%  Similarity=0.553  Sum_probs=35.2

Q ss_pred             ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc--eEEEEEEE
Q 040474          172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG--RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g--~y~ykf~v  215 (283)
                      +++.++|+.   .+|+  ..++|... ....|.+.+.+|++  .++|||++
T Consensus        15 e~v~i~Gs~~~LG~W~~~~a~~l~~~-~~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816          15 QSVYVTGSSPELGNWDPQKALKLSDV-GFPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             CEEEEEEChHHhCCCCccccccCCCC-CCCcEEEEEEeCCCCccEEEEEEE
Confidence            899999975   6798  45688765 46789999999886  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.42  E-value=0.014  Score=56.64  Aligned_cols=73  Identities=15%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             EEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECC-EeeecCCcceeecCCCCCcceE
Q 040474          162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDG-EWTCNKYELVSSPNKDGHVNNY  239 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg-~w~~d~~~~~~~~~~~G~~nn~  239 (283)
                      ++|+.-.+.+++|.|...   + ..+||.+. ++|.|+++++ +.+| +.|+|.||| ..+.||.+.....+  .+..++
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~-~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~--~~~~S~   72 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL-GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDG--VHGPSQ   72 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeEC-CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccC--CCCCeE
Confidence            467777788899999873   2 36899886 5799999997 7788 789999999 67899999876322  233455


Q ss_pred             EEe
Q 040474          240 VQV  242 (283)
Q Consensus       240 i~v  242 (283)
                      |..
T Consensus        73 V~d   75 (542)
T TIGR02402        73 VVD   75 (542)
T ss_pred             Eec
Confidence            544

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=96.34  E-value=0.034  Score=55.64  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEec-------CCceEEEEEEEC---CEe--eecCCcc
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKREL-------PEGRYEYKYIVD---GEW--TCNKYEL  226 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l-------~~g~y~ykf~vd---g~w--~~d~~~~  226 (283)
                      ..++|+-=.+.++.|.|+|+||+|+ ...||.+. +.|.|++.++-       +.| ..|||.|.   |.+  +.||-..
T Consensus       114 ~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~-~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        114 GGITYREWAPGAKAAALIGDFNNWNPNAHWMTKN-EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCCCccCceeC-CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            5788988888899999999999998 35788875 58999998863       344 36666664   544  5677665


Q ss_pred             eeecC
Q 040474          227 VSSPN  231 (283)
Q Consensus       227 ~~~~~  231 (283)
                      ..+.+
T Consensus       192 ~~~~~  196 (758)
T PLN02447        192 YAVQA  196 (758)
T ss_pred             eeecc
Confidence            54444

>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A

Probab=96.26  E-value=0.01  Score=46.87  Aligned_cols=76  Identities=26%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             eEEEEEeccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCCh----hHHHHHHHHHHHhCCCHHHHHHHHHh
Q 040474           62 IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGR----APAVALAYMFWVLGYKLNEAHQLLLS  135 (283)
Q Consensus        62 i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~R----S~~v~~ayLm~~~~~~~~~A~~~v~~  135 (283)
                      +.|..+ ..|.++.++.. +-..+..+++.+++  ..++.+|||.+.-.+    ++.++.||+|...+|++++|++-+.+
T Consensus        32 l~Y~~F-~~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~  109 (141)
T PF14671_consen   32 LVYENF-YADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLAS  109 (141)
T ss_dssp             S----S-SS------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTT
T ss_pred             EEEecc-cCcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            344433 36888888774 44456667777754  246688888775433    46699999999999999999999988


Q ss_pred             hCCC
Q 040474          136 KRPC  139 (283)
Q Consensus       136 ~r~~  139 (283)
                      .-|.
T Consensus       110 ~~p~  113 (141)
T PF14671_consen  110 IQPP  113 (141)
T ss_dssp             TT--
T ss_pred             cCCC
Confidence            7644

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=96.11  E-value=0.068  Score=41.30  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             ceEEEEeeC---CCcceEEEeeccCCCCc-----cccceeecCCCeEEEEEecCCc-eEEEEEEECCE------------
Q 040474          160 ELVTFSWKG---KNCTSVEISGIDIGWGQ-----RMPLTFDKEQGLWILKRELPEG-RYEYKYIVDGE------------  218 (283)
Q Consensus       160 ~~v~f~w~~---~g~~~v~l~Gsf~~W~~-----~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vdg~------------  218 (283)
                      ..|+|.|..   .....+.|.++.++...     ...|.+..+...|..++.||.+ +=.|.|+.+-.            
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~   81 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA   81 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence            479999992   33488999999999842     5678888777899999999998 79999997533            


Q ss_pred             ----eeecCCcceeecCCC---CCcceEEEecc
Q 040474          219 ----WTCNKYELVSSPNKD---GHVNNYVQVDD  244 (283)
Q Consensus       219 ----w~~d~~~~~~~~~~~---G~~nn~i~v~~  244 (283)
                          -+.||-||....+..   |..-++++..+
T Consensus        82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~  114 (122)
T PF11806_consen   82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPD  114 (122)
T ss_dssp             HGGG-B--TTSSSEEE-TT---SSEEEEEE-TT
T ss_pred             HHhccCCCCCCCCCCCCCccccccccCceeCCC
Confidence                468999998866655   88899998876

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=96.11  E-value=0.0071  Score=61.49  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-c--CCCEEEEEcCCCCChhHHHHH
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-R--NGGVTYVHCTAGLGRAPAVAL  115 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-~--~~~~VlVHC~~G~~RS~~v~~  115 (283)
                      .++|...|...   -..+.|+.+... .  ..|+++|||.||.||||+.++
T Consensus       702 ~Wpd~gvPe~~---t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~  749 (1087)
T KOG4228|consen  702 AWPDHGVPETP---TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIV  749 (1087)
T ss_pred             cCCCCCCcccc---hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEE
Confidence            46777666533   223455444321 1  248999999999999999544

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.94  E-value=0.11  Score=38.74  Aligned_cols=55  Identities=20%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             ceEEEEeeCC----CcceEEEeecc---CCCCccc-----cceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGK----NCTSVEISGID---IGWGQRM-----PLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~----g~~~v~l~Gsf---~~W~~~~-----pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .+|+|.-+..    -.+++.++|+.   .+|+...     +|... ....|.+.++||.| ..+|||++
T Consensus         3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~-~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP-NWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC-CCCCEEEEEEcCCCCcEEEEEEE
Confidence            5788887632    23899999965   5798422     66543 45679999999999 59999999

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.94  E-value=0.047  Score=53.85  Aligned_cols=69  Identities=25%  Similarity=0.445  Sum_probs=54.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEEC---CE--eeecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD---GE--WTCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd---g~--w~~d~~~~~~~  229 (283)
                      ..++|+--.+.+++|.|+|+|++|. ...||.+..+.|.|.+.++ +.+|. .|+|.|+   |.  .+.||..-...
T Consensus        28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~  103 (613)
T TIGR01515        28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE  103 (613)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence            4688998899999999999999997 3468887655799999886 46665 5777774   55  47888887664

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.89  E-value=0.12  Score=37.75  Aligned_cols=43  Identities=28%  Similarity=0.653  Sum_probs=35.9

Q ss_pred             cceEEEeecc---CCCCccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          171 CTSVEISGID---IGWGQRMPLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       171 ~~~v~l~Gsf---~~W~~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .+++.++|+.   .+|+...+|...  .+.|.+.+++|++ .++|||++
T Consensus        15 Gq~l~v~G~~~~LG~W~~~~~l~~~--~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818          15 GEHVAILGSTKELGSWKKKVPMNWT--ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             CCEEEEEeChHHHCCCCCCCccccC--CCCEEEEEEeCCCCcEEEEEEE
Confidence            3899999976   689977778765  4569999999988 69999999

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.84  E-value=0.035  Score=40.78  Aligned_cols=53  Identities=26%  Similarity=0.563  Sum_probs=39.6

Q ss_pred             EEEEeeCC---CcceEEEeecc---CCCCccccceeecCCCeEEEEEecCCce-EEEEEEE
Q 040474          162 VTFSWKGK---NCTSVEISGID---IGWGQRMPLTFDKEQGLWILKRELPEGR-YEYKYIV  215 (283)
Q Consensus       162 v~f~w~~~---g~~~v~l~Gsf---~~W~~~~pl~~~~~~~~~~~~~~l~~g~-y~ykf~v  215 (283)
                      ++|.-...   +.+.+.|+|+-   .+|+...+|... +.+.|.+++.||.+. ++|||++
T Consensus         3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~-~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           3 VTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV-KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             EEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC-CCCCEEEEEEecCCCcEEEEEEE
Confidence            44544332   33778899965   579877888765 467899999999985 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.57  E-value=0.066  Score=39.77  Aligned_cols=43  Identities=35%  Similarity=0.651  Sum_probs=35.5

Q ss_pred             ceEEEeec---cCCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          172 TSVEISGI---DIGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gs---f~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      +.+.|+|+   ..+|+  ..++|... ++..|.+++.+|++ .++|||++
T Consensus        14 e~l~v~Gs~~~LG~W~~~~a~~m~~~-~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          14 EAVYISGNCNQLGNWNPSKAKRMQWN-EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CEEEEEeCcHHHCCCCccccCcccCC-CCCCEEEEEEECCCCcEEEEEEE
Confidence            89999997   56798  45678765 46689999999988 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.45  E-value=0.044  Score=55.16  Aligned_cols=64  Identities=14%  Similarity=-0.033  Sum_probs=49.8

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEE--CCEe--eecCCcc
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIV--DGEW--TCNKYEL  226 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v--dg~w--~~d~~~~  226 (283)
                      -++|+--.+.+++|.|+|+|++ ....||.+..+.|.|.+.+++..|.. |||.|  ||++  ..||..-
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPyaf   96 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYRF   96 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCceeEecccccc
Confidence            6889999999999999999997 45679998667899999999777742 44545  8865  5566653

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=95.21  E-value=0.11  Score=37.96  Aligned_cols=44  Identities=32%  Similarity=0.601  Sum_probs=35.8

Q ss_pred             ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCC--c-eEEEEEEE
Q 040474          172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPE--G-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~--g-~y~ykf~v  215 (283)
                      +.+.|+|+.   .+|+  ..++|...+.++.|.+++.+|+  | .++|||++
T Consensus        14 e~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          14 QSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            899999976   4787  5578876532678999999998  7 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=95.18  E-value=0.096  Score=49.12  Aligned_cols=89  Identities=21%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             ccceEEEEeeCCCc-------ceEEEeec--cCC--CCccccceeecCCCeEEEEEecCCc-eEEEEEEEC---C-----
Q 040474          158 RKELVTFSWKGKNC-------TSVEISGI--DIG--WGQRMPLTFDKEQGLWILKRELPEG-RYEYKYIVD---G-----  217 (283)
Q Consensus       158 ~~~~v~f~w~~~g~-------~~v~l~Gs--f~~--W~~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vd---g-----  217 (283)
                      ....|+|-|..+.+       +.|++-++  .+.  +.++.+|.+-.+..+|..++.||.. +-.|+|+++   .     
T Consensus        37 ~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~~  116 (411)
T PRK10439         37 GMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSAF  116 (411)
T ss_pred             CcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccccc
Confidence            34799999998543       24776432  222  3344578888777899999999998 799999993   1     


Q ss_pred             --------------------EeeecCCcceeecCCCCCcceEEEeccCC
Q 040474          218 --------------------EWTCNKYELVSSPNKDGHVNNYVQVDDAP  246 (283)
Q Consensus       218 --------------------~w~~d~~~~~~~~~~~G~~nn~i~v~~~~  246 (283)
                                          .-+.||.||....++.|+..|++++.+.+
T Consensus       117 ~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~  165 (411)
T PRK10439        117 APAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAP  165 (411)
T ss_pred             ccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCC
Confidence                                12489999988767777777999998743

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.98  E-value=0.36  Score=36.02  Aligned_cols=54  Identities=30%  Similarity=0.580  Sum_probs=38.8

Q ss_pred             eEEEEee---CCCcceEEEeecc---CCCC--ccccceee---cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          161 LVTFSWK---GKNCTSVEISGID---IGWG--QRMPLTFD---KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       161 ~v~f~w~---~~g~~~v~l~Gsf---~~W~--~~~pl~~~---~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .|+|.-.   ..| +.+.|+|+.   .+|+  ..++|...   .+++.|.+++.||++ .++|||++
T Consensus         8 ~V~F~i~~~t~~G-e~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           8 AVTFNERVTTSYG-ENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             EEEEEEeeEcCCC-CeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            4555543   344 889999975   5788  35677643   235689999999988 49999996

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]

Probab=94.96  E-value=0.025  Score=57.65  Aligned_cols=44  Identities=23%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHH-Hh----CCCHHHHHHHHHhhCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFW-VL----GYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~-~~----~~~~~~A~~~v~~~r~~  139 (283)
                      .+++.|||..|.||||+++++-++. ..    -++.-.+.+.+|..||.
T Consensus      1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~ 1066 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPG 1066 (1087)
T ss_pred             CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcc
Confidence            6899999999999999977666442 22    13444555555665555

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.75  E-value=0.26  Score=36.36  Aligned_cols=43  Identities=23%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             ceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          172 TSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      +.+.|+|+.   .+|+  ..++|... ....|.+.+.||.| ..+|||++
T Consensus        16 e~l~v~Gs~~~LG~W~~~~a~~l~~~-~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810          16 QSVYVVGNVPQLGNWSPADAVKLDPT-AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEChHHhCCCChhhcccccCC-CCCeEEEEEEcCCCCeEEEEEEE
Confidence            899999965   4798  44566554 45679999999998 69999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=94.72  E-value=0.16  Score=37.33  Aligned_cols=29  Identities=34%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474           94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK  125 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~  125 (283)
                      .++.+|+|+|..| .||.. ++.+| ...|.+
T Consensus        59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~   87 (101)
T cd01518          59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK   87 (101)
T ss_pred             cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence            3567899999999 58854 34444 455653

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PLN02160 thiosulfate sulfurtransferase

Probab=94.43  E-value=0.12  Score=40.70  Aligned_cols=19  Identities=21%  Similarity=0.377  Sum_probs=14.7

Q ss_pred             cCCCEEEEEcCCCCChhHHH
Q 040474           94 RNGGVTYVHCTAGLGRAPAV  113 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v  113 (283)
                      ..+.+|++||..| .||...
T Consensus        79 ~~~~~IivyC~sG-~RS~~A   97 (136)
T PLN02160         79 NPADDILVGCQSG-ARSLKA   97 (136)
T ss_pred             CCCCcEEEECCCc-HHHHHH
Confidence            4567899999999 488543

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.99  E-value=0.35  Score=36.70  Aligned_cols=47  Identities=26%  Similarity=0.567  Sum_probs=34.7

Q ss_pred             CCCcceEEEeecc---CCCC--ccccceee------cCCCeEEEEEecCCc----eEEEEEEE
Q 040474          168 GKNCTSVEISGID---IGWG--QRMPLTFD------KEQGLWILKRELPEG----RYEYKYIV  215 (283)
Q Consensus       168 ~~g~~~v~l~Gsf---~~W~--~~~pl~~~------~~~~~~~~~~~l~~g----~y~ykf~v  215 (283)
                      ..| +++.++|+-   .+|+  ..++|...      .....|.+.++||++    ..+|||+.
T Consensus        13 ~~g-q~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          13 DRD-TELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             CCC-CEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            344 899999964   6787  44566653      234569999999986    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=93.41  E-value=1.1  Score=33.04  Aligned_cols=44  Identities=30%  Similarity=0.505  Sum_probs=33.6

Q ss_pred             ceEEEeecc---CCCC--ccccceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          172 TSVEISGID---IGWG--QRMPLTFD--KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gsf---~~W~--~~~pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      +++.|+|+.   .+|+  ..++|...  .+...|.+++.+|++ .++|||+|
T Consensus        14 e~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815          14 QSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             CEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            899999965   5786  45677542  123479999999887 59999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=93.39  E-value=0.44  Score=34.43  Aligned_cols=49  Identities=22%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             CCcceEEEeeccCCCCc--cccceeecC---CCeEEEEEecCCceEEEEEEE-CC
Q 040474          169 KNCTSVEISGIDIGWGQ--RMPLTFDKE---QGLWILKRELPEGRYEYKYIV-DG  217 (283)
Q Consensus       169 ~g~~~v~l~Gsf~~W~~--~~pl~~~~~---~~~~~~~~~l~~g~y~ykf~v-dg  217 (283)
                      .++..|.+.+.|++|..  .++|.+..-   .+.|.+++.+|..-|...|+. ||
T Consensus        16 ~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg   70 (87)
T PF03423_consen   16 SGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG   70 (87)
T ss_dssp             S-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred             CCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence            35789999999999983  356776532   689999999999988888888 65

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.08  E-value=0.44  Score=35.34  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=37.7

Q ss_pred             ceEEEEeeC----CCcceEEEeecc---CCCCcc--ccceee---cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKG----KNCTSVEISGID---IGWGQR--MPLTFD---KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~----~g~~~v~l~Gsf---~~W~~~--~pl~~~---~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .+++|.-..    .| +++.|+|+.   .+|+..  +.|...   ...+.|.+.++||.| .++|||++
T Consensus         3 v~v~f~v~~~~t~~G-q~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           3 VSVRFVVNNATTQLG-ENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             EEEEEEEeccccCCC-CEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            355666532    34 899999965   579833  322211   234679999999998 59999999

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>PRK01415 hypothetical protein; Validated

Probab=92.57  E-value=0.38  Score=41.86  Aligned_cols=28  Identities=25%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474           94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      .++++|+++|.+|+ || ..++++|. ..|.
T Consensus       169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~-~~Gf  196 (247)
T PRK01415        169 LKGKKIAMVCTGGI-RC-EKSTSLLK-SIGY  196 (247)
T ss_pred             cCCCeEEEECCCCh-HH-HHHHHHHH-HcCC
Confidence            35678999999996 88 55566664 5555

>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.29  E-value=0.3  Score=46.95  Aligned_cols=36  Identities=19%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHH-HHHHH
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVA-LAYMF  119 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~-~ayLm  119 (283)
                      .+-.|...+...+.+|||||.-|=.||+-++ .|-||
T Consensus       362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll  398 (717)
T KOG4471|consen  362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL  398 (717)
T ss_pred             HHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence            3444555666778899999999999998744 44454

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=92.29  E-value=0.54  Score=34.71  Aligned_cols=72  Identities=18%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             HHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeE-EEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEE
Q 040474           24 KLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQ-HIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVH  102 (283)
Q Consensus        24 ~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~-~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVH  102 (283)
                      .+...+-..+|++++..+.....+              .. ..++|+.+.......  ..         + ...++++|+
T Consensus        14 ~~~~~~~~~liDvR~~~e~~~~~i--------------~~~~~~ip~~~~~~~~~~--~~---------~-~~~~~ivv~   67 (110)
T COG0607          14 LLLAGEDAVLLDVREPEEYERGHI--------------PGAAINIPLSELKAAENL--LE---------L-PDDDPIVVY   67 (110)
T ss_pred             HhhccCCCEEEeccChhHhhhcCC--------------Ccceeeeecccchhhhcc--cc---------c-CCCCeEEEE
Confidence            344556678999998754332222              12 566677654322100  00         2 456889999


Q ss_pred             cCCCCChhHHHHHHHHHHHhCC
Q 040474          103 CTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus       103 C~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      |.+|. || ..++.+|. ..|+
T Consensus        68 C~~G~-rS-~~aa~~L~-~~G~   86 (110)
T COG0607          68 CASGV-RS-AAAAAALK-LAGF   86 (110)
T ss_pred             eCCCC-Ch-HHHHHHHH-HcCC
Confidence            99996 88 45555554 4443

>TIGR02104 pulA_typeI pullulanase, type I

Probab=91.69  E-value=0.78  Score=45.29  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCc-----cccceeecCCCeEEEEEe-cCCc-eEEEEEEECCE--eeecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQ-----RMPLTFDKEQGLWILKRE-LPEG-RYEYKYIVDGE--WTCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~-----~~pl~~~~~~~~~~~~~~-l~~g-~y~ykf~vdg~--w~~d~~~~~~~  229 (283)
                      ..+.|+.-.+.+++|.|.+ |++|+.     .++|.+. .+|.|.+.++ +.+| .|.|+...+|.  ++.||.+....
T Consensus        19 ~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~-~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~   95 (605)
T TIGR02104        19 EKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG-ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT   95 (605)
T ss_pred             CeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC-CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence            4688998888889999997 777742     5688774 5799999997 5566 45555554665  48899987664

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN02316 synthase/transferase

Probab=89.54  E-value=0.76  Score=47.85  Aligned_cols=49  Identities=24%  Similarity=0.477  Sum_probs=39.2

Q ss_pred             CcceEEEeeccCCCCcc---ccceeec-CCCeEEEEEecCCceEEEEEEE-CCE
Q 040474          170 NCTSVEISGIDIGWGQR---MPLTFDK-EQGLWILKRELPEGRYEYKYIV-DGE  218 (283)
Q Consensus       170 g~~~v~l~Gsf~~W~~~---~pl~~~~-~~~~~~~~~~l~~g~y~ykf~v-dg~  218 (283)
                      +..+|.|.|.||+|.-.   ..|.+.. .+.+|++.+.+|+.-|.-.|+. ||.
T Consensus       169 ~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~  222 (1036)
T PLN02316        169 NEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ  222 (1036)
T ss_pred             CCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence            45889999999999732   3555554 3668999999999999999998 774

>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO

Probab=88.86  E-value=1.2  Score=40.97  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVAL  115 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~  115 (283)
                      .+..|.+.+...+..|||||..|-.||+.++.
T Consensus       219 ~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~s  250 (353)
T PF06602_consen  219 GASRIADLLHDEGSSVLVHCSDGWDRTSQLSS  250 (353)
T ss_dssp             HHHHHHHHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred             HHHHHHHHhhccCceEEEEcCCCCcccHHHHH
Confidence            34444555556788999999999999965443

Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=88.65  E-value=2.8  Score=32.30  Aligned_cols=29  Identities=21%  Similarity=0.366  Sum_probs=19.2

Q ss_pred             cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474           94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      .+..+|+|+|..|-.||..++  +++...|.
T Consensus        84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~  112 (128)
T cd01520          84 ERDPKLLIYCARGGMRSQSLA--WLLESLGI  112 (128)
T ss_pred             CCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence            456789999975435775433  66666676

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=88.02  E-value=1.6  Score=33.01  Aligned_cols=29  Identities=24%  Similarity=0.159  Sum_probs=19.4

Q ss_pred             CCCEEEEEcCCCCChhHHHHHHHHHHHhCCC
Q 040474           95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGYK  125 (283)
Q Consensus        95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~  125 (283)
                      +..+|+|+|..| +++++.++..| ...|++
T Consensus        78 ~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~  106 (122)
T cd01448          78 NDDTVVVYDDGG-GFFAARAWWTL-RYFGHE  106 (122)
T ss_pred             CCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence            567899999997 55555555444 455654

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=87.70  E-value=1.9  Score=43.25  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=49.3

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCC----ccccceeecCCCeEEEEEe-cCCceEEEEEEECCEe-------------e
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGEW-------------T  220 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~w-------------~  220 (283)
                      ...+.|..-.+.++.|.|. .|+++.    ..++|.+. .+|.|.+.+. +.+|. .|+|.|+|.|             .
T Consensus        13 ~~g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~g~-~Y~yrv~g~~~~~~g~~f~~~~~~   89 (688)
T TIGR02100        13 GQGVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER-TDDIWHGYLPGAQPGQ-LYGYRVHGPYDPENGHRFNPNKLL   89 (688)
T ss_pred             CCcEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC-CCCEEEEEECCCCCCC-EEEEEEeeeeCCCCCcccCcCcee
Confidence            3568899888888999986 444443    24677764 5789999996 77776 4999999843             5


Q ss_pred             ecCCcceee
Q 040474          221 CNKYELVSS  229 (283)
Q Consensus       221 ~d~~~~~~~  229 (283)
                      .||.+....
T Consensus        90 ~DPYA~~~~   98 (688)
T TIGR02100        90 LDPYAKALD   98 (688)
T ss_pred             cCcCceeec
Confidence            677776654

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]

Probab=87.62  E-value=1  Score=43.46  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL  115 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~  115 (283)
                      ++..+|.+++..+|..|||||.-|-.||..|+.
T Consensus       331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S  363 (573)
T KOG1089|consen  331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS  363 (573)
T ss_pred             HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence            355666777766778999999999999966544

>PLN02950 4-alpha-glucanotransferase

Probab=86.37  E-value=5.4  Score=41.33  Aligned_cols=69  Identities=22%  Similarity=0.383  Sum_probs=48.5

Q ss_pred             cceEEEEeeCC---CcceEEEeecc---CCCC--ccccceeecCCCeEEEEEecCCc--eEEEEEEE---CCE--eeecC
Q 040474          159 KELVTFSWKGK---NCTSVEISGID---IGWG--QRMPLTFDKEQGLWILKRELPEG--RYEYKYIV---DGE--WTCNK  223 (283)
Q Consensus       159 ~~~v~f~w~~~---g~~~v~l~Gsf---~~W~--~~~pl~~~~~~~~~~~~~~l~~g--~y~ykf~v---dg~--w~~d~  223 (283)
                      ...|+|.-..+   ..++|.|+|+-   .+|+  ...+|... ....|.+++++|.+  ..+|||++   +|.  |...+
T Consensus       152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~-~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~g~  230 (909)
T PLN02950        152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT-GDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLELGV  230 (909)
T ss_pred             ceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC-CCCcEEEEEEecCCCceEEEEEEEEcCCCceEEeeCC
Confidence            35677775443   23899999965   5797  44566553 46789999999988  49999999   343  76666


Q ss_pred             Cccee
Q 040474          224 YELVS  228 (283)
Q Consensus       224 ~~~~~  228 (283)
                      +.-..
T Consensus       231 NR~~~  235 (909)
T PLN02950        231 NRELS  235 (909)
T ss_pred             Cceee
Confidence            55544

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=86.25  E-value=1.8  Score=32.12  Aligned_cols=27  Identities=15%  Similarity=0.201  Sum_probs=18.3

Q ss_pred             CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474           95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus        95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      ++.+|+|||..|. ||. .++..| +..|+
T Consensus        65 ~~~~ivv~C~~G~-rs~-~a~~~L-~~~G~   91 (109)
T cd01533          65 PRTPIVVNCAGRT-RSI-IGAQSL-INAGL   91 (109)
T ss_pred             CCCeEEEECCCCc-hHH-HHHHHH-HHCCC
Confidence            4578999999996 873 344444 45565

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=86.10  E-value=3.2  Score=42.74  Aligned_cols=82  Identities=22%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEEC------CE----eeecCCc
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD------GE----WTCNKYE  225 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd------g~----w~~d~~~  225 (283)
                      ...++|+.-.+.+++|.|+.-.++|.  ..++|.+....|.|++.++ ...|. .|+|.|+      |+    .+.||..
T Consensus       134 ~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA  212 (898)
T TIGR02103       134 DSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYS  212 (898)
T ss_pred             CCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCc
Confidence            46789998888889999996555542  4578887645799999986 45564 3666664      54    4789998


Q ss_pred             ceeecCCCCCcceEEEec
Q 040474          226 LVSSPNKDGHVNNYVQVD  243 (283)
Q Consensus       226 ~~~~~~~~G~~nn~i~v~  243 (283)
                      -....+  |...-|+...
T Consensus       213 ~als~n--~~~S~VvDl~  228 (898)
T TIGR02103       213 VSLSAN--SEYSQVVDLN  228 (898)
T ss_pred             ceEcCC--CCCeEEeCCc
Confidence            877433  3443344443

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PLN02950 4-alpha-glucanotransferase

Probab=85.99  E-value=5.2  Score=41.41  Aligned_cols=64  Identities=23%  Similarity=0.459  Sum_probs=43.1

Q ss_pred             ceEEEEeeCCC--cceEEEeecc---CCCC--ccccceeec--CCCeEEEEEecCCc-eEEEEEEE---CCE---eeecC
Q 040474          160 ELVTFSWKGKN--CTSVEISGID---IGWG--QRMPLTFDK--EQGLWILKRELPEG-RYEYKYIV---DGE---WTCNK  223 (283)
Q Consensus       160 ~~v~f~w~~~g--~~~v~l~Gsf---~~W~--~~~pl~~~~--~~~~~~~~~~l~~g-~y~ykf~v---dg~---w~~d~  223 (283)
                      ..++|.-....  ++++.|+|+.   .+|+  ..++|....  ++..|++++.||.| ..+|||++   ||.   |...+
T Consensus         9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE~g~   88 (909)
T PLN02950          9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWEAGK   88 (909)
T ss_pred             EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeeecCC
Confidence            34555544322  3899999976   5687  457775432  24479999999988 59999995   343   65555

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=85.53  E-value=5.3  Score=29.79  Aligned_cols=56  Identities=18%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             ceEEEEeeCC--CcceEEEeeccCC--C-CccccceeecCCC---eEEEEEecCCceEEEEEEE
Q 040474          160 ELVTFSWKGK--NCTSVEISGIDIG--W-GQRMPLTFDKEQG---LWILKRELPEGRYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~--g~~~v~l~Gsf~~--W-~~~~pl~~~~~~~---~~~~~~~l~~g~y~ykf~v  215 (283)
                      +.++++....  ...+|.|.-.-..  + ...++|.+....+   .|.+++.++.|.+.|.|.|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            4555555443  2467777554332  1 2468888775543   4899999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PLN02316 synthase/transferase

Probab=84.25  E-value=4.8  Score=42.12  Aligned_cols=56  Identities=13%  Similarity=0.150  Sum_probs=43.5

Q ss_pred             ceEEEEeeCC-----CcceEEEeeccCCCCc------cccceeecCCCeEEEEEecCCceEEEEEEE
Q 040474          160 ELVTFSWKGK-----NCTSVEISGIDIGWGQ------RMPLTFDKEQGLWILKRELPEGRYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~-----g~~~v~l~Gsf~~W~~------~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v  215 (283)
                      .+|++-++..     ++.+|.+.|+||.|..      +..|.+.+.+..+.+++.+|..-|-..|+-
T Consensus       491 ~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        491 TTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPADNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeecCCCceEEEEEEccccceEEEEEE
Confidence            5666666554     4699999999999973      345666655667899999999998888877

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=83.66  E-value=3.7  Score=31.07  Aligned_cols=19  Identities=21%  Similarity=0.330  Sum_probs=14.5

Q ss_pred             cCCCEEEEEcCCCCChhHHH
Q 040474           94 RNGGVTYVHCTAGLGRAPAV  113 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v  113 (283)
                      .+..+|+|+|..|. ||..+
T Consensus        62 ~~~~~ivv~C~~G~-rs~~a   80 (117)
T cd01522          62 GKDRPVLLLCRSGN-RSIAA   80 (117)
T ss_pred             CCCCeEEEEcCCCc-cHHHH
Confidence            45678999999995 88543

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=83.45  E-value=4.3  Score=29.67  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=18.5

Q ss_pred             cCCCEEEEEcCCCCChhHHHHHH---HHHHHhCC
Q 040474           94 RNGGVTYVHCTAGLGRAPAVALA---YMFWVLGY  124 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v~~a---yLm~~~~~  124 (283)
                      .++..|+++|..|. |+...+.+   +.+...|+
T Consensus        65 ~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~   97 (113)
T PF00581_consen   65 DKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGF   97 (113)
T ss_dssp             TTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTT
T ss_pred             cccccceeeeeccc-ccchhHHHHHHHHHHHcCC
Confidence            35668999997775 66554444   33444454

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>smart00450 RHOD Rhodanese Homology Domain

Probab=83.43  E-value=3.4  Score=29.24  Aligned_cols=28  Identities=25%  Similarity=0.498  Sum_probs=16.8

Q ss_pred             cCCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474           94 RNGGVTYVHCTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      ..+.+|+|+|..|. |+.  .+++++...|.
T Consensus        54 ~~~~~iv~~c~~g~-~a~--~~~~~l~~~G~   81 (100)
T smart00450       54 DKDKPVVVYCRSGN-RSA--KAAWLLRELGF   81 (100)
T ss_pred             CCCCeEEEEeCCCc-HHH--HHHHHHHHcCC
Confidence            45678999996664 652  23333445554

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PLN02960 alpha-amylase

Probab=82.75  E-value=2.7  Score=42.95  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCcc-ccce-----eecCCCeEEEEEe--cCCc
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQR-MPLT-----FDKEQGLWILKRE--LPEG  207 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~-~pl~-----~~~~~~~~~~~~~--l~~g  207 (283)
                      ..|.|.-=.+|++.+.|+|+||||+.. .++.     ++ +-|.|.+.++  |..|
T Consensus       128 ~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  182 (897)
T PLN02960        128 HRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHD-DFGYWFIILEDKLREG  182 (897)
T ss_pred             cCeEEEEEcCCceeEEEeecccCCCcccchhhccccccc-ccceEEEEechhhhcC
Confidence            477887777788999999999999844 3433     22 3467887775  6655

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=82.32  E-value=4.7  Score=42.60  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             eEEEEeeCCCcceEEEee-ccCCCCc---cccceeecCCCeEEEEEe-cCCc-----eEEEEEEECC----EeeecCCcc
Q 040474          161 LVTFSWKGKNCTSVEISG-IDIGWGQ---RMPLTFDKEQGLWILKRE-LPEG-----RYEYKYIVDG----EWTCNKYEL  226 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~G-sf~~W~~---~~pl~~~~~~~~~~~~~~-l~~g-----~y~ykf~vdg----~w~~d~~~~  226 (283)
                      .++|+.-.+.+++|.|+. .+++|..   .++|.+. ..|.|.+.++ +.+|     -+.|+|.|++    ..+.||.+.
T Consensus       328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~-~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG-DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC-CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            378988888889999998 4455643   6788874 5899999886 4442     3678888876    467899887


Q ss_pred             eee
Q 040474          227 VSS  229 (283)
Q Consensus       227 ~~~  229 (283)
                      ...
T Consensus       407 al~  409 (1111)
T TIGR02102       407 SLA  409 (1111)
T ss_pred             EEe
Confidence            654

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=80.54  E-value=6.2  Score=39.44  Aligned_cols=68  Identities=21%  Similarity=0.184  Sum_probs=50.2

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-------------eeec
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-------------WTCN  222 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-------------w~~d  222 (283)
                      ...+.|+.-.+.+++|.|+. |+++.  ..++|.+. .+|.|.+.++ +.+|. .|+|.|+|.             ...|
T Consensus        18 ~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~G~-~Y~yrv~g~~~p~~g~~~~~~~~~~D   94 (658)
T PRK03705         18 GQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPAR-SGDIWHGYLPGARPGL-RYGYRVHGPWQPAQGHRFNPAKLLID   94 (658)
T ss_pred             CCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec-cCCEEEEEECCCCCCC-EEEEEEccccCcccCcccCCCcEecC
Confidence            35689988888889999987 55442  45778764 5789999986 66665 589999874             2578


Q ss_pred             CCcceee
Q 040474          223 KYELVSS  229 (283)
Q Consensus       223 ~~~~~~~  229 (283)
                      |.+....
T Consensus        95 PYA~~~~  101 (658)
T PRK03705         95 PCARQVE  101 (658)
T ss_pred             cCceEEc
Confidence            8877663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		1e-118
3lj8_A	146	Crystal Structure Of Mkp-4 Length = 146		9e-06
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		1e-05
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-05
2hcm_A	164	Crystal Structure Of Mouse Putative Dual Specificit		9e-05
2hxp_A	155	Crystal Structure Of The Human Phosphatase (Dusp9)		1e-04
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		1e-04
1mkp_A	144	Crystal Structure Of Pyst1 (Mkp3) Length = 144		4e-04
2e0t_A	151	Crystal Structure Of Catalytic Domain Of Dual Speci		4e-04

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score =  419 bits (1078), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/281 (71%), Positives = 227/281 (80%)
Query: 3   YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDI 62
           YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI +IQ YAK Y DI
Sbjct: 13  YNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDI 72
Query: 63  QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
           QHIR EIRDFDAFDLR RLPAV+  LYKA+ RNGGVTYVH TAG GRAPAVAL Y FWV 
Sbjct: 73  QHIRCEIRDFDAFDLRXRLPAVVGTLYKAVKRNGGVTYVHSTAGXGRAPAVALTYXFWVQ 132
Query: 123 GYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGIDIG 182
           GYKL EAH+LL SKR CFPKLDAI++AT DILTGL+++ VT + K K  + VEISG+DIG
Sbjct: 133 GYKLXEAHKLLXSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIG 192
Query: 183 WGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYVQV 242
           WGQR+PLT  K  G WILKRELPEG++EYKYI+DGEWT N+ E    PNKDGH NNY +V
Sbjct: 193 WGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKV 252
Query: 243 DDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
            D P+SV    R RL+S+D +L ++E  K+  FLE C + E
Sbjct: 253 VDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 293

>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4 Length = 146

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P+L +GS  +   +++ L ++G++ I  L   P+L  F         + K   D  + 
Sbjct: 6   ILPNLYLGSA-RDSANLESLAKLGIRYI--LNVTPNLPNF---------FEKN-GDFHYK 52
Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  I D  + +L    P  I  + +A+++N GV  VHC AG+ R+  V +AY+   L   
Sbjct: 53  QIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVL-VHCLAGVSRSVTVTVAYLMQKLHLS 111
Query: 126 LNEAHQLLLSKR 137
           LN+A+ L+  K+
Sbjct: 112 LNDAYDLVKRKK 123

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 164 FSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNK 223
           F W G     V +SG    W  ++PLT  +   + IL  +LPEG ++YK+ VDG+WT + 
Sbjct: 15  FRWTG-GGKEVYLSGSFNNWS-KLPLTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTHDP 70
Query: 224 YELVSSPNKDGHVNNYVQV 242
            E + + ++ G VNN +QV
Sbjct: 71  SEPIVT-SQLGTVNNIIQV 88

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 164 FSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNK 223
           F W G     V +SG    W  ++P T  +   + IL  +LPEG ++YK+ VDG+WT + 
Sbjct: 15  FRWTG-GGKEVYLSGSFNNWS-KLPXTRSQNNFVAIL--DLPEGEHQYKFFVDGQWTHDP 70
Query: 224 YELVSSPNKDGHVNNYVQV 242
            E + + ++ G VNN +QV
Sbjct: 71  SEPIVT-SQLGTVNNIIQV 88

>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity Phosphatase Complexed With Zinc Tungstate, New York Structural Genomics Consortium Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 50  IAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGR 109
           ++ Q+       +  +R  + D  A DL   L    + +  A+ R+GG   V+C  G  R
Sbjct: 44  VSRQQPGPRAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAV-RDGGSCLVYCKNGRSR 102
Query: 110 APAVALAYMFWVLGYKLNEAHQLLLSKRP 138
           + AV  AY+    G+ L+ A Q++ S RP
Sbjct: 103 SAAVCTAYLMRHRGHSLDRAFQMVKSARP 131

>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9) Length = 155

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P+L +GS  +   +++ L ++G++ I  L   P+L  F         + K   D  + 
Sbjct: 9   ILPNLYLGSA-RDSANLESLAKLGIRYI--LNVTPNLPNF---------FEKN-GDFHYK 55
Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  I D  + +L    P  I  + +A+++N GV  VH  AG+ R+  V +AY+   L   
Sbjct: 56  QIPISDHWSQNLSRFFPEAIEFIDEALSQNCGVL-VHSLAGVSRSVTVTVAYLMQKLHLS 114
Query: 126 LNEAHQLLLSKR 137
           LN+A+ L+  K+
Sbjct: 115 LNDAYDLVKRKK 126

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 158 RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDG 217
           R  ++ +S  GK    V ISG    W  ++PL   K    ++   +LPEG ++YK+ VDG
Sbjct: 10  RPTVIRWSEGGK---EVFISGSFNNWSTKIPLI--KSHNDFVAILDLPEGEHQYKFFVDG 64
Query: 218 EWTCNKYELVSSPNKDGHVNNYVQVDDA 245
           +W  +  E V + ++ G +NN + V  +
Sbjct: 65  QWVHDPSEPVVT-SQLGTINNLIHVKKS 91

>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3) Length = 144

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +G C +   ++D L + G+K I  L   P+L              +   + ++ 
Sbjct: 7   ILPFLYLG-CAKDSTNLDVLEEFGIKYI--LNVTPNLP----------NLFENAGEFKYK 53
Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  I D  + +L    P  IS + +A  +N GV  VH  AG+ R+  V +AY+   L   
Sbjct: 54  QIPISDHWSQNLSQFFPEAISFIDEARGKNCGVL-VHSLAGISRSVTVTVAYLMQKLNLS 112
Query: 126 LNEAHQLLLSKR 137
           +N+A+ ++  K+
Sbjct: 113 MNDAYDIVKMKK 124

>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity Phosphatase 26, Ms0830 From Homo Sapiens Length = 151

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 62  IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
           I+++  E  D  AFD+ +        +++A+++ GG   VHC  G+ R+  + LAY+   
Sbjct: 51  IRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLY 110
Query: 122 LGYKLNEAHQLLLSKRPCFPKLDAIKSATA 151
               L EA + +   R   P    ++   A
Sbjct: 111 HHLTLVEAIKKVKDHRGIIPNRGFLRQLLA 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	1e-101
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	4e-24
2i6j_A	161	Ssoptp, sulfolobus solfataricus protein tyrosine p	4e-20
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-19
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	6e-19
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	6e-19
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	6e-18
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	9e-18
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	3e-17
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	3e-17
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	3e-17
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	3e-17
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	8e-17
2hcm_A	164	Dual specificity protein phosphatase; structural g	1e-16
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	2e-16
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	3e-16
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	4e-16
3emu_A	161	Leucine rich repeat and phosphatase domain contain	5e-16
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	6e-16
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	9e-16
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	1e-15
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	1e-15
2oud_A	177	Dual specificity protein phosphatase 10; A central	2e-15
2hxp_A	155	Dual specificity protein phosphatase 9; human phos	4e-15
2j16_A	182	SDP-1, tyrosine-protein phosphatase YIL113W; hydro	2e-13
1rxd_A	159	Protein tyrosine phosphatase type IVA, member 1; p	3e-12
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	3e-12
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	8e-12
3cm3_A	176	Late protein H1, dual specificity protein phosphat	9e-12
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	1e-11
2q05_A	195	Late protein H1, dual specificity protein phosphat	1e-11
1ohe_A	348	CDC14B, CDC14B2 phosphatase; protein phosphatase,	7e-11
2c46_A	241	MRNA capping enzyme; phosphatase, transferase, hyd	8e-07
1yn9_A	169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	7e-06
1xri_A	151	AT1G05000; structural genomics, protein structure	1e-05
2f46_A	156	Hypothetical protein; structural genomics, joint c	1e-05
3v0d_A	339	Voltage-sensor containing phosphatase; PTP, hydrol	2e-05
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	2e-05
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  295 bits (757), Expect = e-101
 Identities = 203/283 (71%), Positives = 232/283 (81%)

Query: 1   MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYD 60
           M YNFIRPDLIVGSCLQTPEDVDKLR+IGVKTIFCLQQDPDLEYFGVDI +IQ YAK Y 
Sbjct: 11  MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYS 70

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW 120
           DIQHIR EIRDFDAFDLRMRLPAV+  LYKA+ RNGGVTYVH TAG+GRAPAVAL YMFW
Sbjct: 71  DIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMFW 130

Query: 121 VLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKELVTFSWKGKNCTSVEISGID 180
           V GYKL EAH+LL+SKR CFPKLDAI++AT DILTGL+++ VT + K K  + VEISG+D
Sbjct: 131 VQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLD 190

Query: 181 IGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV 240
           IGWGQR+PLT  K  G WILKRELPEG++EYKYI+DGEWT N+ E    PNKDGH NNY 
Sbjct: 191 IGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA 250

Query: 241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE 283
           +V D P+SV    R RL+S+D +L ++E  K+  FLE C + E
Sbjct: 251 KVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE 293

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A* Length = 157

 Score = 94.4 bits (235), Expect = 4e-24
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 6/137 (4%)

Query: 3   YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDI 62
           Y+ I   +++G+          +    V+ +  + ++ +  +        ++       +
Sbjct: 2   YHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKK-----AGV 56

Query: 63  QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
           + +R    D         L   +    K       V YVHC AG  R+  +  AY+  V 
Sbjct: 57  EQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCV-YVHCKAGRSRSATMVAAYLIQVH 115

Query: 123 GYKLNEAHQLLLSKRPC 139
            +   EA + +   R  
Sbjct: 116 NWSPEEAIEAIAKIRSH 132

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A* Length = 161

 Score = 84.1 bits (208), Expect = 4e-20
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 4   NFIRPDLIVGSCLQTPE-DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDI 62
            ++R   I GS L   E ++ + R+ GVK +  L +D ++E    D        K    +
Sbjct: 2   YWVRRKTIGGSGLPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNG-L 60

Query: 63  QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
           Q +   I D         L  +     K +        VHC  G+GR   +  +Y+    
Sbjct: 61  QPLHIPIPDGGVPSDSQFLTIM-----KWLLSEKEGNLVHCVGGIGRTGTILASYLILTE 115

Query: 123 GYKLNEAHQLLLSKRPC 139
           G ++  A   +   RP 
Sbjct: 116 GLEVESAIDEVRLVRPG 132

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 84.3 bits (207), Expect = 2e-19
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQ-GLWILKRELPEGRYEYKYIVDGEWT 220
           V   W+    + V ++G    W + + L  D +  G + +K  L  G + +++IVD E  
Sbjct: 6   VEIRWQQ-GGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELR 64

Query: 221 CNKYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACP 280
            +   L ++ ++ G+  NY++V     + +        +D       +   I   +   P
Sbjct: 65  VSD-FLPTATDQMGNFVNYIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQIGKDP 123

Query: 281 D 281
           D
Sbjct: 124 D 124

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens} Length = 151

 Score = 80.3 bits (199), Expect = 6e-19
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P L +G       +  +LR++G+  +                      A     I+++
Sbjct: 5   VWPGLYLGD-QDMANNRRELRRLGITHVLNASHSRWRGT---------PEAYEGLGIRYL 54

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
             E  D  AFD+ +        +++A+++ GG   VHC  G+ R+  + LAY+       
Sbjct: 55  GVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLT 114

Query: 126 LNEAHQLLLSKRPCFP 141
           L EA + +   R   P
Sbjct: 115 LVEAIKKVKDHRGIIP 130

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} Length = 151

 Score = 80.5 bits (199), Expect = 6e-19
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 15/138 (10%)

Query: 3   YNFIRPDLIVGSCL-QTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD 61
           ++++ P  + G  L + P     L  +GV+ +  L +                       
Sbjct: 9   FSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSDSCP------------G 56

Query: 62  IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
           +   R  I DF           V  ++    N  G    VHC  G GR   +   Y+   
Sbjct: 57  LTLHRLRIPDFCPPAPDQIDRFV--QIVDEANARGEAVGVHCALGFGRTGTMLACYLVKE 114

Query: 122 LGYKLNEAHQLLLSKRPC 139
            G    +A   +   RP 
Sbjct: 115 RGLAAGDAIAEIRRLRPG 132

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A* Length = 183

 Score = 78.5 bits (194), Expect = 6e-18
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P + VG+     +D+ KL+++G+  +    +     +   +    ++       I ++
Sbjct: 31  VTPRIYVGN-ASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKD-----SGITYL 84

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
             +  D   F+L          + +A+ +  G   VHC  G  R+P + +AY+       
Sbjct: 85  GIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMD 144

Query: 126 LNEAHQLLLSKRPCFP 141
           +  A  ++   R   P
Sbjct: 145 VKSALSIVRQNREIGP 160

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A Length = 205

 Score = 78.6 bits (194), Expect = 9e-18
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P L +G       D  KL Q+G+  +            G               +++ 
Sbjct: 49  VWPSLFLGD-AYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYR-------GMSLEYY 100

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
             E  D   FDL +    V   +  A++   G   VHC  G+ R+  + LA++       
Sbjct: 101 GIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMT 160

Query: 126 LNEAHQLLLSKRPCFP 141
           L EA Q + + R   P
Sbjct: 161 LVEAIQTVQAHRNICP 176

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} Length = 160

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P L +G+     +D+D+L +  +  I  + + P                    DI ++
Sbjct: 11  VLPGLYLGN-FIDAKDLDQLGRNKITHIISIHESPQ---------------PLLQDITYL 54

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           R  + D     ++      I+ ++      G    VH  AG+ R+  +  AY+  V G  
Sbjct: 55  RIPVADTPEVPIKKHFKECINFIHCCRLNGGNC-LVHSFAGISRSTTIVTAYVMTVTGLG 113

Query: 126 LNEAHQLLLSKRPC 139
             +  + + + RP 
Sbjct: 114 WRDVLEAIKATRPI 127

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} Length = 188

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I   L + +      +   L    +  +  +  +                   Y+DIQ++
Sbjct: 23  ITKSLYISN-GVAANNKLMLSSNQITMVINVSVEVVNTL--------------YEDIQYM 67

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  + D     L      +   ++    + G    +HC AG+ R+ A+ LAY+       
Sbjct: 68  QVPVADSPNSRLCDFFDPIADHIHSVEMKQGRT-LLHCAAGVSRSAALCLAYLMKYHAMS 126

Query: 126 LNEAHQLLLSKRPC 139
           L +AH    S RP 
Sbjct: 127 LLDAHTWTKSCRPI 140

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens} Length = 144

 Score = 75.7 bits (187), Expect = 3e-17
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I+P L++GS      D+D L++  V  I  +    +  +                D  + 
Sbjct: 7   IKPWLLLGS-QDAAHDLDTLKKNKVTHILNVAYGVENAF--------------LSDFTYK 51

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              I D    ++    P     + +A  ++G V  VH  AG+ RA A+ + ++       
Sbjct: 52  SISILDLPETNILSYFPECFEFIEEAKRKDGVV-LVHSNAGVSRAAAIVIGFLMNSEQTS 110

Query: 126 LNEAHQLLLSKRPC 139
              A  L+ + RP 
Sbjct: 111 FTSAFSLVKNARPS 124

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} Length = 165

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +G+  +   D ++L +  V  I  +                       + ++++
Sbjct: 10  ILPGLYIGN-FKDARDAEQLSKNKVTHILSVHDSAR---------------PMLEGVKYL 53

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
                D  + +L       I  +++   R      VHC AG+ R+  + +AY+  V  + 
Sbjct: 54  CIPAADSPSQNLTRHFKESIKFIHECRLRGESC-LVHCLAGVSRSVTLVIAYIMTVTDFG 112

Query: 126 LNEAHQLLLSKRPC 139
             +A   + + R C
Sbjct: 113 WEDALHTVRAGRSC 126

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} Length = 154

 Score = 74.6 bits (184), Expect = 8e-17
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 6   IRPDLIVGSCLQ-TPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQH 64
           I P L +G         +  L++ G+  I C++Q+ +  +   +              ++
Sbjct: 9   ILPGLFLGPYSSAMKSKLPVLQKHGITHIICIRQNIEANFIKPNF---------QQLFRY 59

Query: 65  IRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGY 124
           +  +I D    ++    P     +  ++   G V  VH  AG+ R+ A  +AY+    G 
Sbjct: 60  LVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKV-LVHGNAGISRSAAFVIAYIMETFGM 118

Query: 125 KLNEAHQLLLSKRPC 139
           K  +A   +  +R C
Sbjct: 119 KYRDAFAYVQERRFC 133

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Length = 164

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P L +G+  +     + L + G+     + +                       +  +
Sbjct: 15  VAPALFIGN-ARAAGATELLVRAGITLCVNVSRQQPGPRA--------------PGVAEL 59

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           R  + D  A DL   L    + +  A+   G    V+C  G  R+ AV  AY+    G+ 
Sbjct: 60  RVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSC-LVYCKNGRSRSAAVCTAYLMRHRGHS 118

Query: 126 LNEAHQLLLSKRPC 139
           L+ A Q++ S RP 
Sbjct: 119 LDRAFQMVKSARPV 132

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
             F W G     V +SG    W  ++P+T  + Q  ++   +LPEG ++YK+ VDG+WT 
Sbjct: 13  TVFRWTG-GGKEVYLSGSFNNW-SKLPMT--RSQNNFVAILDLPEGEHQYKFFVDGQWTH 68

Query: 222 NKYELVSSPNKDGHVNNYVQVDD 244
           +  E +   ++ G VNN +QV  
Sbjct: 69  DPSEPI-VTSQLGTVNNIIQVKK 90

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens} Length = 219

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P L +G    T  D  +L++ G   +            G D            DIQ+ 
Sbjct: 57  VWPKLYIGD-EATALDRYRLQKAGFTHVLNAAHGRWNVDTGPDYY-------RDMDIQYH 108

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
             E  D   FDL +      + + +A++ +     VHC  G  R+  + LAY+       
Sbjct: 109 GVEADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMT 168

Query: 126 LNEAHQLLLSKRPCFP 141
           L +A Q +   R   P
Sbjct: 169 LVDAIQQVAKNRCVLP 184

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} Length = 211

 Score = 74.4 bits (183), Expect = 4e-16
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +GS        + L  + +  +  + +                       + + 
Sbjct: 9   ILPFLYLGS-AYHASKCEFLANLHITALLNVSRRTSEAC--------------MTHLHYK 53

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D    D+       I  +     + G V  VH  AG+ R+P + +AY+     ++
Sbjct: 54  WIPVEDSHTADISSHFQEAIDFIDCVREKGGKV-LVHSEAGISRSPTICMAYLMKTKQFR 112

Query: 126 LNEAHQLLLSKRPC 139
           L EA   +  +R  
Sbjct: 113 LKEAFDYIKQRRSM 126

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} Length = 161

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I   + +GS      +VD +    + +I  +  +    +               D    +
Sbjct: 13  IIQYIHLGS-FLNAHNVDYIHNNNISSILLVGIEVPSLF--------------KDQCDIL 57

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           R +I   +   L   +P  I  + ++I R  GV  +    G+ +APA+ +A++ +     
Sbjct: 58  RLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGV-LIISGTGVNKAPAIVIAFLMYYQRLS 116

Query: 126 LNEAHQLLLSKRPC 139
              A   +    P 
Sbjct: 117 FINAFNKVQGLYPL 130

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens} Length = 190

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I   L +G       +   L+  G+  I                  I+     +   +++
Sbjct: 29  ITSSLFLGR-GSVASNRHLLQARGITCIVN--------------ATIEIPNFNWPQFEYV 73

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  + D     + +    V  K++    ++G    VHC AG+ R+  + +AY+       
Sbjct: 74  KVPLADMPHAPIGLYFDTVADKIHSVSRKHGAT-LVHCAAGVSRSATLCIAYLMKFHNVC 132

Query: 126 LNEAHQLLLSKRPC 139
           L EA+  + ++RP 
Sbjct: 133 LLEAYNWVKARRPV 146

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} Length = 145

 Score = 71.4 bits (176), Expect = 9e-16
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I   + +GS      +++ L+  GV+ I  + ++ D  +                  ++ 
Sbjct: 7   IFEHVFLGS-EWNASNLEDLQNRGVRYILNVTREIDNFF--------------PGVFEYH 51

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D +A DL          + KA         VH   G+ R+ +  +AY     G+ 
Sbjct: 52  NIRVYDEEATDLLAYWNDTYKFISKAKKHGSKC-LVHSKMGVSRSASTVIAYAMKEYGWN 110

Query: 126 LNEAHQLLLSKRPC 139
           L+ A+  +  +R  
Sbjct: 111 LDRAYDYVKERRTV 124

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A Length = 144

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +GS        D L  +G+  +  +  D    +                  Q+ 
Sbjct: 7   ILPFLYLGS-AYHAARRDMLDALGITALLNVSSDCPNHF--------------EGHYQYK 51

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D    D+       I  +    +  G V  VH  AG+ R+  + LAY+      +
Sbjct: 52  CIPVEDNHKADISSWFMEAIEYIDAVKDCRGRV-LVHSQAGISRSATICLAYLMMKKRVR 110

Query: 126 LNEAHQLLLSKRPC 139
           L EA + +  +R  
Sbjct: 111 LEEAFEFVKQRRSI 124

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} Length = 149

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +G+  Q  +D+D ++++ +  +  +     L ++                  + 
Sbjct: 7   ILPFLFLGN-EQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKG------------LFNYK 53

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           R    D +  +LR         + +A     G+  +HC AG+ R+  + +AY+       
Sbjct: 54  RLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGL-LIHCQAGVSRSATIVIAYLMKHTRMT 112

Query: 126 LNEAHQLLLSKRPC 139
           + +A++ +  KRP 
Sbjct: 113 MTDAYKFVKGKRPI 126

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} Length = 177

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +G+  Q  +D+D ++++ +  +  +     L ++                  + 
Sbjct: 11  ILPFLFLGN-EQDAQDLDTMQRLNIGYVINVTTHLPLYHY------------EKGLFNYK 57

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           R    D +  +LR         + +A     G+  +HC AG+ R+  + +AY+       
Sbjct: 58  RLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGL-LIHCQAGVSRSATIVIAYLMKHTRMT 116

Query: 126 LNEAHQLLLSKRPC 139
           + +A++ +  KRP 
Sbjct: 117 MTDAYKFVKGKRPI 130

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A Length = 155

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 14/134 (10%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P+L +GS  +   +++ L ++G++ I  +  +            +  + +   D  + 
Sbjct: 9   ILPNLYLGS-ARDSANLESLAKLGIRYILNVTPN------------LPNFFEKNGDFHYK 55

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  I D  + +L    P  I  + +A+++N GV  VH  AG+ R+  V +AY+   L   
Sbjct: 56  QIPISDHWSQNLSRFFPEAIEFIDEALSQNCGV-LVHSLAGVSRSVTVTVAYLMQKLHLS 114

Query: 126 LNEAHQLLLSKRPC 139
           LN+A+ L+  K+  
Sbjct: 115 LNDAYDLVKRKKSN 128

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A Length = 159

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 19  PEDVDKLRQIGVKTIFCLQQDP-DLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL 77
            + +++L++ GV TI  + +   D                  + I  +     D      
Sbjct: 30  NKFIEELKKYGVTTIVRVCEATYDTTLV------------EKEGIHVLDWPFDDGAPPSN 77

Query: 78  RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
           ++    +     K     G    VHC AGLGRAP +    +    G K  +A Q +  KR
Sbjct: 78  QIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKR 136

Query: 138 PC 139
             
Sbjct: 137 RG 138

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A Length = 189

 Score = 62.8 bits (152), Expect = 3e-12
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 19  PEDVDKLRQIGVKTIFCLQQDP-DLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL 77
            + +++L++ GV TI  + +   D                  + I  +     D      
Sbjct: 51  NKFIEELKKYGVTTIVRVCEATYDTTLV------------EKEGIHVLDWPFDDGAPPSN 98

Query: 78  RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR 137
           ++    +     K     G    VHC AGLGRAP +    +    G K  +A Q +  KR
Sbjct: 99  QIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKR 157

Query: 138 PC 139
             
Sbjct: 158 RG 159

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A* Length = 212

 Score = 62.4 bits (151), Expect = 8e-12
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 20  EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM 79
           +D ++L+  G++ IF      +L  + V  +    Y +    I      I D    D+  
Sbjct: 62  KDTEELKSCGIQDIFVFCTRGELSKYRVPNLL-DLYQQ--CGIITHHHPIADGGTPDIAS 118

Query: 80  RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRP 138
                I +      +N   T +H   GLGR+  VA   + ++       +A   L   R 
Sbjct: 119 CCE--IMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRG 176

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A Length = 176

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 22/140 (15%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           +  ++ +G+  +   D     ++  K +                + + +Y     +I  I
Sbjct: 35  VTNNVYLGN-YKNAMDAP-SSEVKFKYVLN--------------LTMDKYTLPNSNINII 78

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D    D+      V + L K   RN  V  VH  AG+ R+ A+ LAY+       
Sbjct: 79  HIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPV-LVHSAAGVNRSGAMILAYLMSKNKES 137

Query: 126 LN-----EAHQLLLSKRPCF 140
           L        +  +   R  F
Sbjct: 138 LPMLYFLYVYHSMRDLRGAF 157

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major} Length = 167

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 21/144 (14%)

Query: 2   TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDP-DLEYFGVDIIAIQEYAKTYD 60
            ++F+  D    S L  P  + +L+  GV+ +  +     D                   
Sbjct: 22  LFHFLILDAPSPSNL--PTYIKELQHRGVRHLVRVCGPTYDATLV------------KSR 67

Query: 61  DIQHIRAEIRDFDAFDLRMRLPAV------ISKLYKAINRNGGVTYVHCTAGLGRAPAVA 114
            I        D       +    +      +++  +  +       VHC AGLGRAP + 
Sbjct: 68  GIDVHSWPFDDGAPPTRAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILV 127

Query: 115 LAYMFWVLGYKLNEAHQLLLSKRP 138
              +         +A  L+  KR 
Sbjct: 128 ALALVEYGNVSALDAIALIREKRK 151

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR} Length = 195

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           +  ++ +G+  +   D     ++  K +                + + +Y     +I  I
Sbjct: 52  VTNNVYLGN-YKNAMDAP-SSEVKFKYVLN--------------LTMDKYTLPNSNINII 95

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D    D+      V + L K   RN  V  VHC AG+ R+ A+ LAY+       
Sbjct: 96  HIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPV-LVHCAAGVNRSGAMILAYLMSKNKES 154

Query: 126 LN-----EAHQLLLSKRPCF 140
           L        +  +   R  F
Sbjct: 155 LPMLYFLYVYHSMRDLRGAF 174

>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A Length = 348

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 24/133 (18%), Positives = 33/133 (24%), Gaps = 17/133 (12%)

Query: 7   RPDLIVGSCLQTPEDV-DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           R  L  G    +PE      +   V TI  L +                   T     H 
Sbjct: 195 RARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMYDAKRF-----------TDAGFDHH 243

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
                D            ++ +         G   VH  AGLGR   +   Y+       
Sbjct: 244 DLFFADGSTPTDA-----IVKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMT 298

Query: 126 LNEAHQLLLSKRP 138
             E    +   RP
Sbjct: 299 AAETIAWVRICRP 311

>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Length = 241

 Score = 48.2 bits (114), Expect = 8e-07
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 49  IIAIQEYAKTYDD-------IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRN-GGVTY 100
           ++ +   ++ YD        I++I+ + +              I    +   RN   +  
Sbjct: 86  LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIG 145

Query: 101 VHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138
           VHCT G  R   +  A++   + + +  A       RP
Sbjct: 146 VHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARP 183

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} Length = 169

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 49  IIAIQEYAKTYD-------DIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYV 101
           II +   +K YD        + + + ++         +    + +         G +  V
Sbjct: 59  IIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGV 118

Query: 102 HCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRP 138
           HCT G+ R   +   Y+   LG    EA       R 
Sbjct: 119 HCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARG 155

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A Length = 151

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 18  TPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL 77
              +   L+ +G+++I  L  +P  E          ++ K+   I+  +  I       +
Sbjct: 22  DSANFSFLQTLGLRSIIYLCPEPYPESN-------LQFLKSNG-IRLFQFGIEGNKEPFV 73

Query: 78  RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQ 131
            +    +   L   ++       +HC  G  R   +    +  +  + L     
Sbjct: 74  NIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLV-GCLRKLQKWCLTSIFD 126

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Length = 156

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 1   MTYNFIRPDLIVGSCLQ-TPEDVDKLRQIGVKTIFCLQQDPDLEYFG-VDIIAIQEYAKT 58
           M    +   L +    Q T  D +++ Q+G+KTI C +  PD E     D   I+++ + 
Sbjct: 15  MAILKLDEHLYISP--QLTKADAEQIAQLGIKTIICNR--PDREEESQPDFAQIKQWLEQ 70

Query: 59  YDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYM 118
              +     +                +    + I +       +C  G  R   +     
Sbjct: 71  A-GVTGFHHQPVTARDIQ-----KHDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFRR 123

Query: 119 FWVLGYKLNEA 129
               G  ++E 
Sbjct: 124 A-AEGMPVDEI 133

>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A Length = 339

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 4   NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQ 63
            ++   +I  S   +       R    +     +     ++   ++ + + Y +T  D  
Sbjct: 28  TYVTDHVIAMSFPSSGRQ-SLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH 86

Query: 64  HIRAEIRDFDAFDLRMRLPAVISKLYKAINRN-GGVTYVHCTAGLGRAPAVALAYMFWVL 122
             R  I D +   L   L   I      +  +   V  +H   G GR   +  +++    
Sbjct: 87  VYRVMIDDHNVPTLVD-LLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDG 145

Query: 123 GYKLNE-AHQLLLSKRPC 139
            +   + A +   S+R  
Sbjct: 146 KFDTAKEALEYFGSRRTD 163

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 162 VTFSWKG-KNCTSVEISGIDIGWGQ-RMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEW 219
           V F+    +   ++ + G         + L   K +   I+  +L  G Y Y + +D ++
Sbjct: 20  VKFTRHWPQYAKNIYLIGEFTSLYPGFVKL--RKIEEQGIVYLKLWPGEYGYGFQIDNDF 77

Query: 220 TCN-------KYELVSSPNKDGHVNNYVQVDDAPSSVSEALRNRLTSDDFDLTKDELHKI 272
                     K  + +S   +        V   P +  + + +   S        E+  I
Sbjct: 78  ENVLDPDNEEKKCVHTSFFPEYKKCLSKLVIKEPDNPLDKIIHIEESGFIHKFNGEII-I 136

Query: 273 R 273
           R
Sbjct: 137 R 137

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* Length = 157

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 15/141 (10%)

Query: 3   YNFIRP-DLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD 61
               +    ++ S L   +    L+Q GV  +  L  D   +    +   + +       
Sbjct: 13  RALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA-----G 67

Query: 62  IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRN-GGVTYVHCTAGLGRAPAVALAYMFW 120
           + ++   + D+            +   + A++++ G    VHC A   RA A A  Y   
Sbjct: 68  MDYVYIPV-DWQNPK-----VEDVEAFFAAMDQHKGKDVLVHCLAN-YRASAFAYLYQ-L 119

Query: 121 VLGYKLNEAHQLLLSKRPCFP 141
             G   N A  +         
Sbjct: 120 KQGQNPNMAQTMTPWNDELAI 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 33/247 (13%), Positives = 68/247 (27%), Gaps = 78/247 (31%)

Query: 3   YNFIRPDLIVGSCL--QTPEDVDKL-RQIGVKTIFCLQQDPDLEYFGVDI----IAIQEY 55
            N  +   I+ S L    P +  K+  ++    +F     P        I    +++  +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VF-----PP----SAHIPTILLSLIWF 397

Query: 56  AKTYDDIQHIRAEIRDF-----DAFDLRMRLPAVISKLYKAINRNGGVTYVH-------- 102
                D+  +  ++  +        +  + +P++  +L   +        +H        
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHRSIVDHYN 454

Query: 103 ---CTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRK 159
                      P     Y +  +G+ L                         + +T  R 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-------------------PERMTLFRM 495

Query: 160 ELVTFSW-KGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGE 218
             + F + + K      I      W     +    +Q    LK       Y+  YI D  
Sbjct: 496 VFLDFRFLEQK------IRHDSTAWNASGSILNTLQQ----LK------FYK-PYICD-- 536

Query: 219 WTCNKYE 225
               KYE
Sbjct: 537 -NDPKYE 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 49/369 (13%), Positives = 107/369 (28%), Gaps = 123/369 (33%)

Query: 16  LQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQ-HIRAEIRDFDA 74
           + + + V    ++        +Q+  ++ F  +++    Y      I+   R        
Sbjct: 55  IMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRM 111

Query: 75  F-DLRMRL--------------PAVISKLYKAI---NRNGGVTYVHCTAGLGR---APAV 113
           + + R RL                   KL +A+        V  +    G G+   A  V
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDV 170

Query: 114 ALAY---------MFWV-LGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTG------- 156
            L+Y         +FW+ L    N    +L   +    ++D   ++ +D  +        
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 157 LRKELVTF--SWKGKNC------------------------TSVEISGIDIGWGQR---- 186
           ++ EL     S   +NC                        T+      D          
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 187 ----MPLTFDKEQGLWILKR-------ELPE---------------------GRYE-YKY 213
                 +T   ++   +L +       +LP                        ++ +K+
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 214 IVDGEWTCNKYELV--SSPNK---DGHVNNYVQV----DDA--PSSVSEALRNRLTSDDF 262
           +      C+K   +  SS N      +   + ++      A  P+ +   +   +   D 
Sbjct: 350 V-----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 263 DLTKDELHK 271
            +  ++LHK
Sbjct: 405 MVVVNKLHK 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	100.0
3emu_A	161	Leucine rich repeat and phosphatase domain contain	100.0
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	99.98
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	99.97
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	99.97
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	99.97
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	99.97
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	99.97
2hxp_A	155	Dual specificity protein phosphatase 9; human phos	99.97
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	99.97
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	99.97
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	99.97
2hcm_A	164	Dual specificity protein phosphatase; structural g	99.96
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	99.96
2oud_A	177	Dual specificity protein phosphatase 10; A central	99.96
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	99.96
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	99.96
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	99.96
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	99.96
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	99.96
2j16_A	182	SDP-1, tyrosine-protein phosphatase YIL113W; hydro	99.95
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	99.95
3cm3_A	176	Late protein H1, dual specificity protein phosphat	99.94
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	99.94
2q05_A	195	Late protein H1, dual specificity protein phosphat	99.92
2i6j_A	161	Ssoptp, sulfolobus solfataricus protein tyrosine p	99.91
1xri_A	151	AT1G05000; structural genomics, protein structure	99.89
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.89
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	99.89
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.87
1ohe_A	348	CDC14B, CDC14B2 phosphatase; protein phosphatase,	99.85
1yn9_A	169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	99.84
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	99.84
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	99.83
2f46_A	156	Hypothetical protein; structural genomics, joint c	99.82
1rxd_A	159	Protein tyrosine phosphatase type IVA, member 1; p	99.8
2c46_A	241	MRNA capping enzyme; phosphatase, transferase, hyd	99.79
1d5r_A	324	Phosphoinositide phosphotase PTEN; C2 domain, phos	99.76
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	99.69
3v0d_A	339	Voltage-sensor containing phosphatase; PTP, hydrol	99.59
3n0a_A	361	Tyrosine-protein phosphatase auxilin; phosphatase-	99.58
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.55
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	99.34
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.15
3mmj_A	314	MYO-inositol hexaphosphate phosphohydrolase; phyta	99.14
1fpr_A	284	Protein-tyrosine phosphatase 1C; protein tyrosine	98.93
3f41_A	629	Phytase; tandem repeat, protein tyrosine phosphata	98.92
3f41_A	629	Phytase; tandem repeat, protein tyrosine phosphata	98.91
1g4w_R	383	Protein tyrosine phosphatase SPTP; virulence facto	98.89
2b49_A	287	Protein tyrosine phosphatase, non-receptor type 3;	98.88
3b7o_A	316	Tyrosine-protein phosphatase non-receptor type 11;	98.87
2oc3_A	303	Tyrosine-protein phosphatase non-receptor type 18;	98.86
1p15_A	253	Protein-tyrosine phosphatase alpha; transmembrane,	98.86
2i75_A	320	Tyrosine-protein phosphatase non-receptor type 4;	98.84
2p6x_A	309	Tyrosine-protein phosphatase non-receptor type 22;	98.83
2gjt_A	295	Receptor-type tyrosine-protein phosphatase PTPro;	98.83
2ooq_A	286	Receptor-type tyrosine-protein phosphatase T; prot	98.83
4grz_A	288	Tyrosine-protein phosphatase non-receptor type 6;	98.83
2i1y_A	301	Receptor-type tyrosine-protein phosphatase; recept	98.83
1wch_A	315	Protein tyrosine phosphatase, non-receptor type 13	98.82
1jln_A	297	STEP-like ptpase, protein tyrosine phosphatase, re	98.82
4az1_A	302	Tyrosine specific protein phosphatase; hydrolase,	98.81
1yfo_A	302	D1, receptor protein tyrosine phosphatase alpha; h	98.81
2cm2_A	304	Tyrosine-protein phosphatase non-receptor type 1;	98.79
2hc1_A	291	Receptor-type tyrosine-protein phosphatase beta; p	98.77
2cjz_A	305	Human protein tyrosine phosphatase PTPN5; protein	98.74
2bzl_A	325	Tyrosine-protein phosphatase, non-receptor type 14	98.74
2h4v_A	320	Receptor-type tyrosine-protein phosphatase gamma;	98.73
1l8k_A	314	T-cell protein-tyrosine phosphatase; hydrolase; 2.	98.72
3s3e_A	307	Tyrosine-protein phosphatase 10D; differentiation,	98.71
3m4u_A	306	Tyrosine specific protein phosphatase, putative; p	98.7
1zc0_A	309	Tyrosine-protein phosphatase, non-receptor type 7;	98.68
3i36_A	342	Vascular protein tyrosine phosphatase 1; PTP, hydr	98.63
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	98.62
1lyv_A	306	Protein-tyrosine phosphatase YOPH; toxin, hydrolas	98.56
4i8n_A	354	Tyrosine-protein phosphatase non-receptor type 1;	98.56
2jjd_A	599	Receptor-type tyrosine-protein phosphatase epsilo;	98.49
1ygr_A	610	CD45 protein tyrosine phosphatase; protein tyrosin	98.48
4ge6_A	314	Tyrosine-protein phosphatase non-receptor type 9;	98.48
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	98.47
1lar_A	575	Protein (LAR); tyrosine phosphatease, LAR protein,	98.47
1lar_A	575	Protein (LAR); tyrosine phosphatease, LAR protein,	98.47
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	98.44
2jjd_A	599	Receptor-type tyrosine-protein phosphatase epsilo;	98.44
1ygr_A	610	CD45 protein tyrosine phosphatase; protein tyrosin	98.38
2nlk_A	627	Protein tyrosine phosphatase, receptor type, G VA	98.36
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.34
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.3
2nlk_A	627	Protein tyrosine phosphatase, receptor type, G VA	98.28
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.66
1ohe_A	348	CDC14B, CDC14B2 phosphatase; protein phosphatase,	97.61
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.22
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	96.98
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	96.86
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.37
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.21
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.02
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.01
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	94.8
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	94.56
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	93.69
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	93.46
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	93.44
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	93.06
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	92.83
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	92.5
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	92.29
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	92.17
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	92.09
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	91.97
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	91.3
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	89.92
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.2
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	89.0
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	87.37
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	87.1
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	86.35
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	85.57
1vee_A	134	Proline-rich protein family; hypothetical protein,	85.43
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	84.95
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	84.16
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	83.85
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	83.69
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	82.89
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	82.06
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	80.89
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	80.23

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-71  Score=491.89  Aligned_cols=283  Identities=72%  Similarity=1.207  Sum_probs=265.8

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      ||+++|+|+||+|+++.++.+++.|+++||++||||+.+.+...++++...+.+.+....++.|+++|+.|...+++..+
T Consensus        11 ~n~s~I~p~LylGs~~~~~~d~~~L~~~GIt~Vlnl~~~~e~~~~g~~~~~~~~~~~~~~gi~~~~ipi~D~~~~~l~~~   90 (294)
T 3nme_A           11 MNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDFDAFDLRMR   90 (294)
T ss_dssp             CCEEEEETTEEEECCCCSTHHHHHHHHTTEEEEEECCCHHHHHHTTCCHHHHHHHHHTCTTCEEEECCCCTTCHHHHHHH
T ss_pred             CCceEEeCCEEEEcCCCCHHHHHHHHHCCCCEEEECCCCcchhhccCChhhhhhhhhhcCCcEEEEEeCCCCCCCCHHHH
Confidence            78999999999999976789999999999999999998887767777777776666665579999999999999999889


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccc
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKE  160 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~  160 (283)
                      |.+++++|++++++++++|||||.+|+|||+++++||||+..||++++|+++|+++||+.||.++++++|++++.++.++
T Consensus        91 ~~~~~~~I~~~l~~~g~~VLVHC~aG~sRS~tvv~ayLm~~~g~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~~~~k~  170 (294)
T 3nme_A           91 LPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRK  170 (294)
T ss_dssp             HHHHHHHHHHHHHHHCSEEEEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCCchhHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCChhhhhHHHHHhhhccccc
Confidence            99999999999866688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcceEE
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNYV  240 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~i  240 (283)
                      +++|+|..+++++|+|+|||++|++++||.+.+.+|.|++++.||||+|+|||+|||+|++||++|.+.+|++|+.||+|
T Consensus       171 ~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~  250 (294)
T 3nme_A          171 TVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA  250 (294)
T ss_dssp             EEEEEEECSSCSCEEEEETTTEEEEEEECEECTTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEE
T ss_pred             cceeeeccCCCCEEEEEEeccCCCCcccceEcCCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEE
Confidence            99999999878999999999999989999997668999999999999999999999999999999988779999999999


Q ss_pred             EeccCCCcchHHHhhcccCCCCCCChHHHHHHHHHHhhCCCCC
Q 040474          241 QVDDAPSSVSEALRNRLTSDDFDLTKDELHKIRAFLEACPDYE  283 (283)
Q Consensus       241 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (283)
                      .|.++++++.+++|+++++++++||+|||.+|+.+||++|+.|
T Consensus       251 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (294)
T 3nme_A          251 KVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQFLETCSEAE  293 (294)
T ss_dssp             EECCCCCTTCTTHHHHHSSSSCCCCHHHHHHHHHHHHHHCCCC
T ss_pred             EECCCCcchhHHHHHHhhcCCccccHHHHHHHHHHHHhccccc
Confidence            9999889999999999999999999999999999999999875

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}

Probab=100.00  E-value=1.9e-32  Score=222.55  Aligned_cols=132  Identities=17%  Similarity=0.255  Sum_probs=117.3

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +++++|.|+||+|+.+ .+.+.+.|+++||++|||++.+.+.            .  ...++.|+++|+.|.+.+++...
T Consensus         8 ~~~~~I~~~LylG~~~-~a~~~~~L~~~gIt~Vlnl~~~~~~------------~--~~~~~~~~~ipi~D~~~~~l~~~   72 (161)
T 3emu_A            8 LSPTQIIQYIHLGSFL-NAHNVDYIHNNNISSILLVGIEVPS------------L--FKDQCDILRLDIVSEEGHQLYDS   72 (161)
T ss_dssp             GSCEEEETTEEEEETT-GGGCHHHHHHTTEEEEEEEC---------------------CTTSEEEEECCCCSSTTHHHHH
T ss_pred             CCceEEECCEEECChH-HhhCHHHHHHCCCCEEEEeCCCCcc------------c--cCCCCEEEEEeCcCCCCCcHHHH
Confidence            3678999999999996 8999999999999999999975421            0  12479999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |.++++||++++ +.+++|||||.+|+|||+++++||||+..||++++|+++|+++||.+ ||.+|+.|
T Consensus        73 ~~~~~~fI~~~~-~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~Rp~i~pn~~f~~q  140 (161)
T 3emu_A           73 IPNAIKFIIRSI-QRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYPLIDIESGFILQ  140 (161)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            999999999987 45789999999999999999999999999999999999999999998 99999988

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=99.98  E-value=5e-32  Score=215.91  Aligned_cols=137  Identities=23%  Similarity=0.350  Sum_probs=122.0

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      .+++|.|+||+|+.+ ++.+.+.|+++||++|||++.+.+..              ...++.|+++|+.|.+.+++...|
T Consensus         3 ~~~~I~~~LylG~~~-~a~~~~~L~~~gI~~Vl~l~~~~~~~--------------~~~~~~~~~ipi~D~~~~~~~~~~   67 (144)
T 3s4e_A            3 QVGVIKPWLLLGSQD-AAHDLDTLKKNKVTHILNVAYGVENA--------------FLSDFTYKSISILDLPETNILSYF   67 (144)
T ss_dssp             CCEEEETTEEEECHH-HHTCHHHHHHTTCCEEEECSSSCCCC--------------CTTTSEEEECCCCCCTTSCGGGGH
T ss_pred             chhEEcCCEEECChh-HhCCHHHHHHcCCCEEEEccCCCCCC--------------CCCCCEEEEEeccCCCCCchHHHH
Confidence            578999999999996 88999999999999999998755321              124799999999999888888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhcccc
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRK  159 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~  159 (283)
                      .++++||++++ +++++|||||.+|+|||+++++||||+..||++++|+++|+++||.+ ||.+|+.|     +..|++
T Consensus        68 ~~~~~fi~~~~-~~~~~VlVHC~~G~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~q-----L~~~e~  140 (144)
T 3s4e_A           68 PECFEFIEEAK-RKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQ-----LRTYQE  140 (144)
T ss_dssp             HHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHH-----HHHTTH
T ss_pred             HHHHHHHHHHH-HcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH-----HHHHHH
Confidence            99999999997 46788999999999999999999999999999999999999999987 99999998     555543

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=99.97  E-value=1.7e-31  Score=212.79  Aligned_cols=137  Identities=20%  Similarity=0.271  Sum_probs=121.7

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ..++|.|+||+|+.+ ++.+.+.|+++||++|||++.+.+..              ...++.|+++|+.|.+.+++...|
T Consensus         3 ~p~~I~~~lylg~~~-~a~~~~~L~~~gI~~Vi~l~~~~~~~--------------~~~~~~~~~ip~~D~~~~~~~~~~   67 (144)
T 3ezz_A            3 GPVEILPFLYLGSAY-HAARRDMLDALGITALLNVSSDCPNH--------------FEGHYQYKCIPVEDNHKADISSWF   67 (144)
T ss_dssp             CCEEEETTEEEEEHH-HHTCHHHHHHTTCCEEEECSSSCCCT--------------TTTTSEEEECCCCSSSSCCTTTTH
T ss_pred             CcceeeCCEEECChh-hcCCHHHHHHCCCeEEEEccCCCCcc--------------CCCCceEEEEEcccCCCCChHHHH
Confidence            478999999999996 89999999999999999999765321              124799999999999988888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhcccc
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRK  159 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~  159 (283)
                      .++++||+.+. +.+++|||||.+|+|||+++++||||+..|+++++|+++|+++||.+ ||.+|+.|     +..|++
T Consensus        68 ~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~~~~aylm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~q-----L~~~e~  140 (144)
T 3ezz_A           68 MEAIEYIDAVK-DCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQ-----LLQFES  140 (144)
T ss_dssp             HHHHHHHHHHH-HTTCCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTCTTCCCCHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHH-hcCCeEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHhHHHH-----HHHHHH
Confidence            99999999987 56789999999999999999999999999999999999999999986 99999998     555544

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=219.41  Aligned_cols=162  Identities=20%  Similarity=0.286  Sum_probs=135.2

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +++++|.|+||+|+.+ .+.+.+.|+++||++|||++.+.+...              ..++.|+++|+.|.+..++...
T Consensus        18 ~~~~~I~~~LylG~~~-~a~d~~~L~~~gIt~Vi~l~~~~~~~~--------------~~~i~~~~ipi~D~~~~~~~~~   82 (188)
T 2esb_A           18 SGLSQITKSLYISNGV-AANNKLMLSSNQITMVINVSVEVVNTL--------------YEDIQYMQVPVADSPNSRLCDF   82 (188)
T ss_dssp             CCCEEEETTEEEECTT-GGGCHHHHHHTTCCEEEECCSSCCCCC--------------CTTCEEEECCCCSCTTSCGGGG
T ss_pred             CCceEEeCCEEEcCch-HhcCHHHHHHCCCcEEEEecCCCCCcC--------------CCCCEEEEEeCcCCCCccHHHH
Confidence            3689999999999996 889999999999999999998653211              2489999999999888888889


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhcccc
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRK  159 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~  159 (283)
                      |.++++||+.++ +.+++|||||.+|+|||+++++||||+..|+++++|+++|+++||.+ ||.+++.+     +..|++
T Consensus        83 ~~~~~~fI~~~~-~~~~~VLVHC~aG~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~Rp~~~pn~~f~~q-----L~~~e~  156 (188)
T 2esb_A           83 FDPIADHIHSVE-MKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQ-----LIHYEF  156 (188)
T ss_dssp             HHHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCEEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHH-----HHHHHH
Confidence            999999999987 46789999999999999999999999999999999999999999996 99999987     555544


Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeec
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDK  193 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~  193 (283)
                      ..       .+.+++.+..+-.+   .+|..+.+
T Consensus       157 ~l-------~~~~~~~~~~~~~~---~~p~~~~~  180 (188)
T 2esb_A          157 QL-------FGKNTVHMVSSPVG---MIPDIYEK  180 (188)
T ss_dssp             HH-------HSSCSCCEECCTTS---CEEGGGC-
T ss_pred             HH-------ccCCCeeeecCCCC---CCChhhHH
Confidence            33       33466666665333   67777653

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=99.97  E-value=5.7e-31  Score=217.92  Aligned_cols=141  Identities=18%  Similarity=0.350  Sum_probs=121.9

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++++|.|+||+|+.+ ++.+.+.|+++||++||||+.+.+.........    . ....++.|+++|+.|.+.+++...|
T Consensus        27 ~~~~I~p~Lylg~~~-~a~d~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~----~-~~~~gi~~~~ip~~D~~~~~~~~~~  100 (183)
T 3f81_A           27 PCNEVTPRIYVGNAS-VAQDIPKLQKLGITHVLNAAEGRSFMHVNTNAN----F-YKDSGITYLGIKANDTQEFNLSAYF  100 (183)
T ss_dssp             SEEEEETTEEEECHH-HHTCHHHHHHHTCCEEEETTBSSSTTSBCCCTG----G-GTTTTCEEEECCCCCSTTSCGGGGH
T ss_pred             CcceEeCCEEECCch-hhhCHHHHHHCCCcEEEECCCCccccccccchh----h-cccCCCEEEEEEcCCCCcccHHHHH
Confidence            788999999999996 899999999999999999998765221111111    1 1125899999999999988888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~  148 (283)
                      .++++||+.++++.+++|||||.+|+||||++++||||+..||++++|+++|+++|+..||.+|+.|
T Consensus       101 ~~~~~~i~~~~~~~~~~VlVHC~~G~~RSg~~v~ayLm~~~~~~~~~A~~~v~~~R~i~pn~~f~~q  167 (183)
T 3f81_A          101 ERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQ  167 (183)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCHHHHHH
Confidence            9999999999865478999999999999999999999999999999999999999995599999987

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=99.97  E-value=8.4e-31  Score=208.98  Aligned_cols=131  Identities=20%  Similarity=0.279  Sum_probs=118.1

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ..++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+..              ...++.|+++|+.|.+.+++..+|
T Consensus         3 ~~~~I~~~lylg~~~-~~~~~~~L~~~gi~~Vi~l~~~~~~~--------------~~~~~~~~~ipi~D~~~~~l~~~~   67 (145)
T 2nt2_A            3 SPTQIFEHVFLGSEW-NASNLEDLQNRGVRYILNVTREIDNF--------------FPGVFEYHNIRVYDEEATDLLAYW   67 (145)
T ss_dssp             CCEEEETTEEEECHH-HHTCHHHHHHTTEEEEEECCSSSCCS--------------CBTTBEEEECCCCSSTTCCCGGGH
T ss_pred             CccEeeCCEEECChh-HhCCHHHHHHCCCCEEEEeCCCCccC--------------CCCCcEEEEEEEeCCCCCcHHHHH
Confidence            367999999999996 88999999999999999999865321              114799999999998888888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++||+..+ +.+++|||||.+|+|||+++++||||+..||++++|+++|+++||.+ ||.+++.|
T Consensus        68 ~~~~~fi~~~~-~~~~~VlVHC~~G~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~q  134 (145)
T 2nt2_A           68 NDTYKFISKAK-KHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQ  134 (145)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHH-HcCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            99999999987 56789999999999999999999999999999999999999999997 99999987

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=99.97  E-value=6.3e-30  Score=207.30  Aligned_cols=131  Identities=21%  Similarity=0.368  Sum_probs=118.9

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +++++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+.               ...++.|+++|+.|.+.+++...
T Consensus         6 ~~~~~I~~~lylg~~~-~~~d~~~L~~~gI~~Vi~l~~~~~~---------------~~~~i~~~~ipi~D~~~~~~~~~   69 (160)
T 1yz4_A            6 NGMTKVLPGLYLGNFI-DAKDLDQLGRNKITHIISIHESPQP---------------LLQDITYLRIPVADTPEVPIKKH   69 (160)
T ss_dssp             SSSEEEETTEEEECTT-GGGCHHHHHHTTCCEEEEECSSCCC---------------CCTTCEEEEECCCSCTTSCGGGG
T ss_pred             CCceEEECCEEECChh-hhcCHHHHHHCCCeEEEEccCCCCC---------------ccCCCeEEEEECCCCCCccHHHH
Confidence            4789999999999996 8999999999999999999976532               12589999999999988888888


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |.++++||+.++ +.+++|||||.+|+|||+++++||||...|+++++|+++|+++||.+ ||.+++.|
T Consensus        70 ~~~~~~~i~~~~-~~~~~VlVHC~aG~~RSg~~~~aylm~~~~~~~~~a~~~v~~~R~~~~pn~~f~~q  137 (160)
T 1yz4_A           70 FKECINFIHCCR-LNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRPIANPNPGFRQQ  137 (160)
T ss_dssp             HHHHHHHHHHHH-HTTCCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCeEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            999999999887 45789999999999999999999999999999999999999999986 99999987

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A

Probab=99.97  E-value=5.1e-30  Score=206.86  Aligned_cols=132  Identities=23%  Similarity=0.354  Sum_probs=116.9

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      .++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+. .           +....++.|+++|+.|...+++...|.
T Consensus         6 p~~I~~~lylg~~~-~~~d~~~L~~~gI~~Vi~l~~~~~~-~-----------~~~~~~i~~~~ipi~D~~~~~l~~~~~   72 (155)
T 2hxp_A            6 PVQILPNLYLGSAR-DSANLESLAKLGIRYILNVTPNLPN-F-----------FEKNGDFHYKQIPISDHWSQNLSRFFP   72 (155)
T ss_dssp             CEEEETTEEEECTT-GGGCHHHHHHTTEEEEEECSSSCCC-T-----------TTTCTTCEEEECCCCGGGGGGHHHHHH
T ss_pred             CeEEECCEEECChh-hhcCHHHHHHCCCCEEEEeCCCCcc-c-----------ccCCCCeEEEEEECccCCCCCHHHHHH
Confidence            47899999999996 8999999999999999999976421 1           111125999999999988888888899


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      ++++||++.+ +.+++|||||.+|+|||+++++||||+..|+++++|+++|+++||.+ ||.+|+.|
T Consensus        73 ~~~~fi~~~~-~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~q  138 (155)
T 2hxp_A           73 EAIEFIDEAL-SQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISPNFNFMGQ  138 (155)
T ss_dssp             HHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred             HHHHHHHHHH-HcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            9999999987 46789999999999999999999999999999999999999999987 99999988

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=209.55  Aligned_cols=131  Identities=20%  Similarity=0.342  Sum_probs=118.7

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +++++|.|+||+|+.+ ++.+.+.|+++||++|||++.+.+.               ...++.|+++|+.|.+.+++...
T Consensus         5 ~~~~~I~~~lylG~~~-~~~d~~~L~~~gI~~Vi~l~~~~~~---------------~~~~i~~~~ip~~D~~~~~l~~~   68 (165)
T 1wrm_A            5 NGMNKILPGLYIGNFK-DARDAEQLSKNKVTHILSVHDSARP---------------MLEGVKYLCIPAADSPSQNLTRH   68 (165)
T ss_dssp             SSCEEEETTEEEECTT-GGGCHHHHHHTTEEEEEECSTTCCC---------------CSTTCEEEECCCCSSTTSCCGGG
T ss_pred             CchheEECCEEECChh-HhcCHHHHHHCCCcEEEEecCCCCC---------------CCCCCeEEEEECCCCCCccHHHH
Confidence            4789999999999996 8999999999999999999876532               12589999999999887788788


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |.++++||+.++ ..+++|||||.+|+|||+++++||||...|+++++|+++|+++||.+ ||.+++.+
T Consensus        69 ~~~~~~fi~~~~-~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~q  136 (165)
T 1wrm_A           69 FKESIKFIHECR-LRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQ  136 (165)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHTSSCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCeEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHhHHHH
Confidence            999999999886 46789999999999999999999999999999999999999999997 99999987

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=99.97  E-value=6.1e-30  Score=204.84  Aligned_cols=133  Identities=20%  Similarity=0.341  Sum_probs=117.7

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      .+++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+.  +          .....++.|+++|+.|.+.+++...|
T Consensus         3 ~~~~I~~~ly~g~~~-~~~d~~~L~~~gi~~Vi~l~~e~p~--~----------~~~~~~~~~~~ipi~D~~~~~~~~~~   69 (149)
T 1zzw_A            3 ELTPILPFLFLGNEQ-DAQDLDTMQRLNIGYVINVTTHLPL--Y----------HYEKGLFNYKRLPATDSNKQNLRQYF   69 (149)
T ss_dssp             CCEEEETTEEEECTT-GGGCHHHHHHTTEEEEEECCSSSCC--T----------TGGGTCSEEEECCCCCSSSCCCHHHH
T ss_pred             CceEeeCCeEECChh-HhhCHHHHHHCCCcEEEEecCCCCC--c----------ccCCCCeEEEEEECCCCCcccHHHHH
Confidence            578999999999996 8999999999999999999875321  1          01125899999999998877777789


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++||+..+ +.+++|||||.+|+||||++++||||+..|+++++|+++|+++||.+ ||.+++.+
T Consensus        70 ~~~~~~i~~~~-~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R~~~~pn~~f~~q  136 (149)
T 1zzw_A           70 EEAFEFIEEAH-QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQ  136 (149)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHH
Confidence            99999999887 46789999999999999999999999999999999999999999987 99999987

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=99.97  E-value=7.2e-30  Score=205.48  Aligned_cols=136  Identities=21%  Similarity=0.391  Sum_probs=118.1

Q ss_pred             ccccccCCeEEcCCCCCc--ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhh
Q 040474            2 TYNFIRPDLIVGSCLQTP--EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM   79 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~--~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~   79 (283)
                      ++++|.|+||+|+.+ .+  .+.+.|+++||++|||++.+.+.......         ...++.|+++|+.|.+.+++..
T Consensus         5 ~~~~I~~~lylG~~~-~~~~~d~~~L~~~gI~~Vi~l~~~~e~~~~~~~---------~~~~~~~~~ip~~d~~~~~l~~   74 (154)
T 2r0b_A            5 EMQEILPGLFLGPYS-SAMKSKLPVLQKHGITHIICIRQNIEANFIKPN---------FQQLFRYLVLDIADNPVENIIR   74 (154)
T ss_dssp             SCEEEETTEEEECGG-GGSGGGHHHHHHTTCCEEEEEECGGGTTTSSCC---------CTTTSEEEEEECCSSTTSCCGG
T ss_pred             chheEeCCeEECCHH-HhhhccHHHHHHcCCeEEEEeCCccccccCCCC---------CcCceeEEEEECCCCCcccHHH
Confidence            578999999999996 55  68899999999999999977653221111         1247999999999988788878


Q ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .|.++++||+..+ +.+++|||||.+|+||||++++||||...|+++++|+++|+++||.+ ||.+++.+
T Consensus        75 ~~~~~~~~i~~~~-~~~~~vlvHC~aG~~RS~~~~~ayl~~~~~~~~~~a~~~v~~~R~~~~pn~~f~~q  143 (154)
T 2r0b_A           75 FFPMTKEFIDGSL-QMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRFCINPNAGFVHQ  143 (154)
T ss_dssp             GHHHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCCCEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHH
Confidence            8999999999987 46789999999999999999999999999999999999999999987 99999987

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=99.96  E-value=7e-30  Score=207.82  Aligned_cols=132  Identities=24%  Similarity=0.368  Sum_probs=119.1

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +++++|.|+||+|+++ .+.+.+.|+++||++|||++.+.+..              ...++.|+++|+.|.+.+++...
T Consensus        10 ~~~~~I~~~l~lg~~~-~~~d~~~L~~~gI~~Vi~l~~~~~~~--------------~~~~~~~~~ip~~D~~~~~~~~~   74 (164)
T 2hcm_A           10 PPFARVAPALFIGNAR-AAGATELLVRAGITLCVNVSRQQPGP--------------RAPGVAELRVPVFDDPAEDLLTH   74 (164)
T ss_dssp             CSEEEEETTEEEEEGG-GGGCHHHHHHTTEEEEEECSSSCCCC--------------CCTTCEEEECCCCSCTTSCCHHH
T ss_pred             CCCeEEeCCEEECChh-hhcCHHHHHHCCCeEEEEcCCCCCCC--------------CCCCCEEEEEeCcCCCCchHHHH
Confidence            4789999999999996 89999999999999999999876421              12589999999999887777778


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |.++++||+..+ +.+++|||||.+|+||||++++||||+..|+++++|+++|+++||.+ ||.+++.+
T Consensus        75 ~~~~~~~i~~~~-~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~~~~A~~~v~~~R~~~~pn~~f~~q  142 (164)
T 2hcm_A           75 LEPTCAAMEAAV-RDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQ  142 (164)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEEEESSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCEEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            999999999987 46789999999999999999999999999999999999999999996 99999987

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=99.96  E-value=4.2e-29  Score=201.27  Aligned_cols=139  Identities=16%  Similarity=0.267  Sum_probs=119.1

Q ss_pred             cccccCCeEEcCCCCCcccHHH-HHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDK-LRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~-L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      |++|.|+||+|++| .+.+... |+++||++||||+.+.+...++.+...+..     .++.|+++|+.|....+....+
T Consensus         2 f~~I~~~l~~g~~~-~~~~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~-----~gi~~~~~p~~d~~~~~~~~~~   75 (157)
T 3rgo_A            2 YHRIDHTVLLGALP-LKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKK-----AGVEQLRLSTVDMTGVPTLANL   75 (157)
T ss_dssp             EEECSSSEEEESCC-CGGGHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHH-----TTCEEEEECCCTTTSSCCHHHH
T ss_pred             cccccCCeEEecCc-CccchHHHHHHcCCCEEEECccccccccccCCHHHHHH-----CCCeEEEecCCCCCCCChHHHH
Confidence            68999999999997 6666554 499999999999998876655544333222     4899999999998766667789


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+++++|+..+ +.+++|||||.+|+||||+++++|||...|+++++|++.++++||.+ ||.+++.+
T Consensus        76 ~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~~a~l~~~~~~~~~~a~~~v~~~R~~~~~~~~~~~~  142 (157)
T 3rgo_A           76 HKGVQFALKYQ-ALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEV  142 (157)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEESSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCEEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            99999999987 46789999999999999999999999999999999999999999996 99988876

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=208.13  Aligned_cols=133  Identities=20%  Similarity=0.341  Sum_probs=117.9

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      .+++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+.  +          .....++.|+++|+.|.+.+++...|
T Consensus         7 ~~~~I~p~LylG~~~-~a~d~~~L~~~gI~~Vi~l~~e~p~--~----------~~~~~~i~~~~ipi~D~~~~~l~~~~   73 (177)
T 2oud_A            7 ELTPILPFLFLGNEQ-DAQDLDTMQRLNIGYVINVTTHLPL--Y----------HYEKGLFNYKRLPATDSNKQNLRQYF   73 (177)
T ss_dssp             CCEEEETTEEEECTT-TTTCHHHHHHTTEEEEEECCSSSCC--T----------TTTTTCSEEEECCCCCCSSCCCHHHH
T ss_pred             CCeEEECCEEEcChh-hhcCHHHHHHCCCcEEEEecCCCCc--c----------cccCCCceEEEEECCCCCcccHHHHH
Confidence            578999999999996 8999999999999999999875321  1          01135899999999998877877889


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++||+.++ +.+++|||||.+|+||||++++||||+..|+++++|+++|+++||.+ ||.+++.|
T Consensus        74 ~~~~~~i~~~~-~~~~~VlVHC~aG~~RSg~~v~ayLm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~q  140 (177)
T 2oud_A           74 EEAFEFIEEAH-QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQ  140 (177)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHH-hcCCcEEEEcCCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            99999999987 46789999999999999999999999999999999999999999987 99999987

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=99.96  E-value=8.9e-30  Score=204.28  Aligned_cols=137  Identities=21%  Similarity=0.345  Sum_probs=118.1

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++++|.|+||+|+.+ ++.+.+.|+++||++|||++.+.+.  ...+  .+.     ..++.|+++|+.|.+..++...|
T Consensus         1 ~~~~I~~~ly~g~~~-~~~d~~~L~~~gi~~Vi~l~~~~~~--~~~~--~~~-----~~~i~~~~ip~~d~~~~~l~~~~   70 (151)
T 2e0t_A            1 HADEVWPGLYLGDQD-MANNRRELRRLGITHVLNASHSRWR--GTPE--AYE-----GLGIRYLGVEAHDSPAFDMSIHF   70 (151)
T ss_dssp             CEEEEETTEEEECHH-HHTCHHHHHHHTCCEEEETTCCTTC--CSCT--THH-----HHTCEEEECCCCSSTTSCTHHHH
T ss_pred             CccEEeCCeEECChh-HhCCHHHHHHcCCCEEEEccCCccc--CCcc--ccC-----CCCeEEEEEecccCCCccHHHHH
Confidence            478999999999996 8899999999999999999977541  1111  111     13899999999998877777789


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~  148 (283)
                      .++++||+..+.+.+++|||||.+|+||||++++||||...|+++++|+++|+++|+..||.+|+.|
T Consensus        71 ~~~~~~i~~~~~~~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R~i~pn~~f~~q  137 (151)
T 2e0t_A           71 QTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNRGFLRQ  137 (151)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTSCSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCCHHHHHH
Confidence            9999999999853678999999999999999999999999999999999999999986699999987

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=211.87  Aligned_cols=159  Identities=19%  Similarity=0.313  Sum_probs=131.4

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++++|.|+||+|+++ ++.+.+.|+++||++|||++.+.+...              ..++.|+++|+.|...+++...|
T Consensus        25 ~~~~I~~~LylG~~~-~a~d~~~L~~~gI~~Vi~l~~~~~~~~--------------~~gi~y~~ipi~D~~~~~l~~~~   89 (190)
T 2wgp_A           25 GIAQITSSLFLGRGS-VASNRHLLQARGITCIVNATIEIPNFN--------------WPQFEYVKVPLADMPHAPIGLYF   89 (190)
T ss_dssp             TEEEEETTEEEECHH-HHTCHHHHHHTTCCEEEECCSSSCCCC--------------CTTSEEEECCCCSSTTSCGGGGH
T ss_pred             CceEEeCcEEEcChh-hhcCHHHHHHCCCcEEEEecCCCCCCC--------------CCCCEEEEEEcccCCCCCHHHHH
Confidence            578999999999996 889999999999999999997653211              24799999999999888888889


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHHhHHhhhhccccc
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKSATADILTGLRKE  160 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~~~~~~~~~~~~~  160 (283)
                      ..+++||+.++ +.+++|||||.+|+||||++++||||+..|+++++|+++|+++||.+ ||.+++.+     +..|++.
T Consensus        90 ~~~~~fi~~~~-~~~~~VlVHC~aG~~RSgtvv~ayLm~~~~~s~~~A~~~v~~~R~~~~pn~~f~~q-----L~~~e~~  163 (190)
T 2wgp_A           90 DTVADKIHSVS-RKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQ-----LIDYERQ  163 (190)
T ss_dssp             HHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHH-----HHHHHHH
T ss_pred             HHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH-----HHHHHHH
Confidence            99999999987 45788999999999999999999999999999999999999999996 99999987     5444443


Q ss_pred             eEEEEeeCCCcceEEEeeccCCCCcccccee
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTF  191 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~  191 (283)
                      .       .+.+++.+..+-.   .++|..+
T Consensus       164 l-------~~~~~~~~~~~~~---~~~p~~~  184 (190)
T 2wgp_A          164 L-------FGKSTVKMVQTPY---GIVPDVY  184 (190)
T ss_dssp             H-------HSSCSCCEEEETT---EEEEHHH
T ss_pred             H-------hCCCceEEecCCC---CCCchHH
Confidence            2       2335566665532   3555544

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=214.88  Aligned_cols=139  Identities=24%  Similarity=0.318  Sum_probs=119.4

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++++|.|+||+|+.+ .+.+.+.|+++||++|||++.+...    ...  ...++ ...++.|+++|+.|.+.+++..+|
T Consensus        53 ~~~~I~p~LylG~~~-~a~d~~~L~~~gIt~VInl~~~~~~----~~~--~~~~~-~~~~i~y~~ipi~D~~~~~l~~~~  124 (219)
T 2y96_A           53 HVNEVWPKLYIGDEA-TALDRYRLQKAGFTHVLNAAHGRWN----VDT--GPDYY-RDMDIQYHGVEADDLPTFDLSVFF  124 (219)
T ss_dssp             SEEEEETTEEEECHH-HHHCHHHHHHTTCCEEEETTBSTTS----BCC--HHHHT-TTSCCEEEECCCCSSTTSCGGGGH
T ss_pred             CceEEECCEEECChh-HhCCHHHHHHCCCeEEEECCCCccc----ccc--chhhh-cccCcEEEEEECCCCCchhHHHHH
Confidence            478999999999996 8899999999999999999875421    110  11121 125899999999999888888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~  148 (283)
                      .++++||++++...+++|||||.+|+|||+++++||||...||++++|+++|+++|+..||.+|+.|
T Consensus       125 ~~~~~fI~~~l~~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s~~eAl~~vr~~R~i~pn~~f~~q  191 (219)
T 2y96_A          125 YPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNRCVLPNRGFLKQ  191 (219)
T ss_dssp             HHHHHHHHHHHTSTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHTTSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHccCCeEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCHHHHHH
Confidence            9999999999745678999999999999999999999999999999999999999986699999987

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=212.94  Aligned_cols=130  Identities=18%  Similarity=0.325  Sum_probs=117.6

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      +++|.|+||+|+++ .+.+.+.|+++||++|||++.+.+. .             ...++.|+++|+.|...+++..+|.
T Consensus         6 p~eI~p~LylG~~~-~a~d~~~L~~~GIt~VInl~~e~~~-~-------------~~~gi~y~~ipi~D~~~~~l~~~~~   70 (211)
T 2g6z_A            6 PVEILPFLYLGSAY-HASKCEFLANLHITALLNVSRRTSE-A-------------CMTHLHYKWIPVEDSHTADISSHFQ   70 (211)
T ss_dssp             CEEEETTEEEEEHH-HHTCHHHHHHHTCCEEEECSSCCCC-T-------------TCTTSEEEECCCCSSTTSCCGGGHH
T ss_pred             CeEEECCEEEcCCc-cccCHHHHHHCCCCEEEEcCCCCcc-c-------------cccCCEEEEeeCCCCCCCCHHHHHH
Confidence            57899999999996 8899999999999999999986532 1             1258999999999998888888999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      ++++||++++ +.+++|||||.+|+|||+++++||||+..||++++|+++|+++||.+ ||.+++.|
T Consensus        71 ~~~~fI~~~~-~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~s~~eAl~~vr~~Rp~i~pN~~f~~q  136 (211)
T 2g6z_A           71 EAIDFIDCVR-EKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQ  136 (211)
T ss_dssp             HHHHHHHHHH-HTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHH-hcCCeEEEECCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHH
Confidence            9999999987 56788999999999999999999999999999999999999999987 99999987

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=99.96  E-value=2.2e-29  Score=212.28  Aligned_cols=139  Identities=22%  Similarity=0.319  Sum_probs=119.2

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++++|.|+||+|+.+ .+.+.+.|+++||++|||++.+.+.    .+..  .+++ ...++.|+++|+.|.+..++...|
T Consensus        45 ~~~~I~p~LylG~~~-~a~d~~~L~~~gIt~Vinl~~~~~~----~~~~--~~~~-~~~~i~y~~ipi~D~p~~dl~~~f  116 (205)
T 2pq5_A           45 HIDEVWPSLFLGDAY-AARDKSKLIQLGITHVVNAAAGKFQ----VDTG--AKFY-RGMSLEYYGIEADDNPFFDLSVYF  116 (205)
T ss_dssp             SEEEEETTEEEECHH-HHHCHHHHHHHTCCEEEETBCSTTS----CCCH--HHHT-TTSSCEEEECBCCCCTTSCGGGGH
T ss_pred             CceEEECCEEECChh-HhcCHHHHHHcCCeEEEEeCCCccc----CCcc--hhhh-ccCCceEEeeecCCCCcchHHHHH
Confidence            578899999999996 8899999999999999999976432    1100  1111 224799999999998888888899


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~  148 (283)
                      .++++||+.++...+++|||||.+|+|||+++++||||...|+++++|+++|+++|+..||.+|+.|
T Consensus       117 ~~~~~fI~~~l~~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s~~~A~~~vr~~R~i~pn~gf~~q  183 (205)
T 2pq5_A          117 LPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNICPNSGFLRQ  183 (205)
T ss_dssp             HHHHHHHHHHHTSTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHTTTSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEECCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCCHHHHHH
Confidence            9999999998754678999999999999999999999999999999999999999996699999987

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=99.95  E-value=3.8e-27  Score=188.33  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=116.3

Q ss_pred             CccccccCC-eEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhh
Q 040474            1 MTYNFIRPD-LIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM   79 (283)
Q Consensus         1 m~~~~I~~~-l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~   79 (283)
                      +|++||.|+ ||.|+.|..+.+++.|+++||++||||+.+.+....            ...++.|+++|+.|...++ ..
T Consensus         6 ~~~~~i~~~~l~~~~~p~~~~~~~~L~~~gi~~Vi~l~~~~~~~~~------------~~~~~~~~~~~~~d~~~~~-~~   72 (150)
T 4erc_A            6 PNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSD------------SCPGLTLHRLRIPDFCPPA-PD   72 (150)
T ss_dssp             TTCEEEETTTEEEESCCCSHHHHHHHHHTTEEEEEECSSSCCTTGG------------GCTTSEEEECCCCTTSCCC-HH
T ss_pred             CCCEEeccCceeeecCCCCHHHHHHHHHCCCCEEEEcCCCCCCccc------------ccCCceEEEEecCCCCCCC-HH
Confidence            489999999 999999767899999999999999999988754221            2258999999999987665 34


Q ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+..++++|+.++ ..+++|||||.+|+||||+++++|||...|+++++|++.++++|+.+ ||.++..+
T Consensus        73 ~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~~~~~a~~~vr~~R~~~~~~~~q~~~  141 (150)
T 4erc_A           73 QIDRFVQIVDEAN-ARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKA  141 (150)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEEECSSSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCSHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            6888999999887 45789999999999999999999999999999999999999999997 88776664

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=99.94  E-value=1.9e-27  Score=195.64  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=114.6

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCC--cEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGV--KTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLR   78 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI--~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~   78 (283)
                      +++++|.|+||+|+.+ .+.+.   +++||  ++||||+.+.+..              ...++.|+++|+.|.+.+++.
T Consensus        30 ~~~~~I~~~lylg~~~-~a~~~---~~~gI~~~~Ii~l~~~~~~~--------------~~~~~~~~~~p~~d~~~~~l~   91 (176)
T 3cm3_A           30 TIMTRVTNNVYLGNYK-NAMDA---PSSEVKFKYVLNLTMDKYTL--------------PNSNINIIHIPLVDDTTTDIS   91 (176)
T ss_dssp             CSCEECSSSEEEECHH-HHHTG---GGSSSCCSEEEECSSSCCCC--------------TTSCCEEEECCCCCSSSCCCG
T ss_pred             CCceEEeCCEEEcCHH-HhhCH---HHcCCCCCEEEEecCCCCCc--------------CCCCCEEEEEECCCCCcccHH
Confidence            3689999999999996 66666   88999  9999999876421              124899999999999888888


Q ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCC-----HHHHHHHHHhhCCCC-CChhHHHH
Q 040474           79 MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK-----LNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        79 ~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-----~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+|..+++||+.++. .+++|||||.+|+||||++++||||...+++     +.+|+++|+++||.+ ||.+++.|
T Consensus        92 ~~~~~~~~~i~~~~~-~~~~VlVHC~aG~~RSg~~v~aylm~~~~~~~~~v~~~~A~~~vr~~R~~~~pn~~f~~q  166 (176)
T 3cm3_A           92 KYFDDVTAFLSKCDQ-RNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFVENPSFKRQ  166 (176)
T ss_dssp             GGHHHHHHHHHHHHH-HTCCEEEECSSSSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCcEEEECCcCCCHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            889999999999874 4788999999999999999999999999999     999999999999996 99999987

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=183.76  Aligned_cols=134  Identities=19%  Similarity=0.262  Sum_probs=114.5

Q ss_pred             CccccccCC-eEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhh
Q 040474            1 MTYNFIRPD-LIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM   79 (283)
Q Consensus         1 m~~~~I~~~-l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~   79 (283)
                      +|++||.|+ ||+|+.|..+.+.+.|+++||++||||+.+.+...            ....++.|+++|+.|...++ ..
T Consensus         7 ~~~~~I~~~~l~~~~~p~~~~~~~~l~~~gi~~Vv~l~~~~e~~~------------~~~~~~~~~~~~~~d~~~p~-~~   73 (151)
T 2img_A            7 PNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHS------------DSCPGLTLHRLRIPDFCPPA-PD   73 (151)
T ss_dssp             TTCEEEETTTEEEESCCCSHHHHHHHHHTTEEEEEECSSSCCTTG------------GGCTTSEEEECCCCTTCCCC-HH
T ss_pred             CCcEEeecCceeeeCCCCcHHHHHHHHHCCCCEEEECCCCCCCCH------------HHHhhCCeEEEeCCCCCCCC-HH
Confidence            589999999 99999964688999999999999999998754311            01245779999999988776 35


Q ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+.+++++|++++ +.+++|||||.+|+||||+++++|||...|+++++|++.++++|+.+ ||.+++.+
T Consensus        74 ~~~~~~~~i~~~~-~~~~~vlVHC~aG~~Rsg~~~~~~l~~~~~~~~~~a~~~~r~~R~~~~~~~~q~~~  142 (151)
T 2img_A           74 QIDRFVQIVDEAN-ARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKA  142 (151)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCCCcEEEECCCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            7888999999987 45789999999999999999999999888999999999999999997 88777665

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=99.92  E-value=3.9e-25  Score=184.82  Aligned_cols=128  Identities=20%  Similarity=0.204  Sum_probs=112.9

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCC--cEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhh
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGV--KTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM   79 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI--~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~   79 (283)
                      ++++|.|+||+|+.+ .+.+.   +++||  ++||||+.+.+..              ...++.|+++|+.|.+.+++..
T Consensus        48 ~~~~I~~~Lylg~~~-~~~~~---~~~gI~~~~Vi~l~~~~~~~--------------~~~~~~~~~~p~~d~~~~~l~~  109 (195)
T 2q05_A           48 IMTRVTNNVYLGNYK-NAMDA---PSSEVKFKYVLNLTMDKYTL--------------PNSNINIIHIPLVDDTTTDISK  109 (195)
T ss_dssp             SCEECSSSEEEECHH-HHHHS---TTSSSCCSEEEECSSSCCCC--------------TTCCCEEEECCCCCSSSCCCGG
T ss_pred             CCeEEeCCEEECchh-hhhCH---HhCCCCCCEEEEECCCCCCc--------------ccCCcEEEEEEcCCCCcccHHH
Confidence            688999999999996 65555   88999  9999999876321              1258999999999988888788


Q ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCC-----HHHHHHHHHhhCCCC-CChhHHHH
Q 040474           80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK-----LNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~-----~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .|..+++||+..+ +.+++|||||.+|+||||+++++|||...+++     +.+|++.|+++||.+ ||.+++.+
T Consensus       110 ~~~~~~~~i~~~~-~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~~~~~v~~~~A~~~vr~~R~~~~~n~~f~~q  183 (195)
T 2q05_A          110 YFDDVTAFLSKCD-QRNEPVLVHCAAGVNRSGAMILAYLMSKNKESLPMLYFLYVYHSMRDLRGAFVENPSFKRQ  183 (195)
T ss_dssp             GHHHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCcEEEEcCCCCChHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            8999999999887 45789999999999999999999999999999     999999999999996 99999887

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*

Probab=99.91  E-value=1.4e-24  Score=175.49  Aligned_cols=140  Identities=19%  Similarity=0.214  Sum_probs=109.4

Q ss_pred             cccccCC-eEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            3 YNFIRPD-LIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         3 ~~~I~~~-l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      ++||.|+ ||+|+.|..+.+++.|+++||++||||+.+.+............+.+. ..|+.|+++|+.|...++. ..+
T Consensus         1 ~~~I~~~~l~~~~~~~~~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~~~-~~gi~~~~~p~~d~~~p~~-~~~   78 (161)
T 2i6j_A            1 MYWVRRKTIGGSGLPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILK-KNGLQPLHIPIPDGGVPSD-SQF   78 (161)
T ss_dssp             CEEEETTTEEEECCCSSHHHHHHHHHHTCCEEEECSCHHHHHHHHSCHHHHHHHHH-HTTCEEEECCCCTTCCCCH-HHH
T ss_pred             CCcccccceeecCCCCCHHHHHHHHHCCCCEEEEcCchhhhhhhccchhhHHHHHH-HcCceEEEecCCCCCCCCh-HHH
Confidence            5799999 999999733678999999999999999976543211101112222222 2589999999999887754 367


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+++++|.... ..  . ||||.+|+||||+++++|||...|+++++|++.++++|+.+ ||.+++.+
T Consensus        79 ~~~~~~i~~~~-~~--~-lVHC~aG~~Rtg~~~~~~l~~~~~~~~~~a~~~~r~~R~~~~~~~~q~~~  142 (161)
T 2i6j_A           79 LTIMKWLLSEK-EG--N-LVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYEQEMF  142 (161)
T ss_dssp             HHHHHHHHHCC-TT--E-EEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCSHHHHHH
T ss_pred             HHHHHHHHHhC-CC--C-EEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCHHHHHH
Confidence            77888887664 22  2 99999999999999999999888999999999999999996 88877665

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=99.89  E-value=3.8e-23  Score=165.53  Aligned_cols=126  Identities=12%  Similarity=0.219  Sum_probs=97.3

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh--Hh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD--LR   78 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~--~~   78 (283)
                      +||++|.|+||+|+.+ ++.+++.|+++||++||||+.+.+..       ...+.+.. .|+.|+++|+.|...+.  +.
T Consensus         6 ~n~~~v~~~l~~s~~~-~~~d~~~L~~~gi~~Vi~l~~~~e~~-------~~~~~~~~-~gi~~~~ipi~d~~~~~~~~~   76 (151)
T 1xri_A            6 LNFSMVDNGIFRSGFP-DSANFSFLQTLGLRSIIYLCPEPYPE-------SNLQFLKS-NGIRLFQFGIEGNKEPFVNIP   76 (151)
T ss_dssp             TTCEEEETTEEEESCC-CHHHHHHHHHHTCSEEEECCSSCCCH-------HHHHHHHH-HTCEEEECCCCCCCGGGCCCC
T ss_pred             cCcCeeCCCeEECCCc-CccCHHHHHHCCCCEEEECCCCCcCh-------hHHHHHHh-cCCeEEecccccccCccccCC
Confidence            5899999999999997 88999999999999999999876431       11222222 48999999998864331  11


Q ss_pred             -hhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCC
Q 040474           79 -MRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        79 -~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~  139 (283)
                       ..+.+++++|.   ...+++|||||.+|+||||+++++||+ ..|++.++|++.++..|+.
T Consensus        77 ~~~~~~~~~~i~---~~~~~~vlvHC~aG~~RTg~~~a~~l~-~~g~~~~~a~~~~~~~~~~  134 (151)
T 1xri_A           77 DHKIRMALKVLL---DEKNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLTSIFDEYQRFAAA  134 (151)
T ss_dssp             HHHHHHHHHHHH---CGGGCSEEEECSSSSSHHHHHHHHHHH-HTTBCHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHH---cCCCCCEEEECCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHhcCC
Confidence             23444444443   335789999999999999999977665 8999999999999988876

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.89  E-value=6.8e-23  Score=151.33  Aligned_cols=82  Identities=34%  Similarity=0.657  Sum_probs=75.4

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcce
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNN  238 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn  238 (283)
                      ..+++|+|.. ++++|+|+|+|++|+ .+||.+.  +|.|++++.|++|.|+|||+|||+|++||.+|.+ .|++|+.||
T Consensus        10 ~~~v~F~wap-~a~~V~v~GdFn~W~-~~~m~~~--~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~-~d~~G~~Nn   84 (96)
T 1z0n_A           10 ARPTVFRWTG-GGKEVYLSGSFNNWS-KLPMTRS--QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIV-TSQLGTVNN   84 (96)
T ss_dssp             CEEEEEEECS-CCSCEEEEEGGGTTC-CEECEEE--TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEE-ECTTSCEEE
T ss_pred             ceEEEEEECC-CCcEEEEEEEeCCCc-cccCEEC--CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeE-ECCCCCEeE
Confidence            5789999995 569999999999999 8999986  4799999999999999999999999999999987 699999999


Q ss_pred             EEEeccC
Q 040474          239 YVQVDDA  245 (283)
Q Consensus       239 ~i~v~~~  245 (283)
                      +|.|.+.
T Consensus        85 vi~V~~~   91 (96)
T 1z0n_A           85 IIQVKKT   91 (96)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            9999763

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=99.89  E-value=3.9e-23  Score=174.79  Aligned_cols=150  Identities=18%  Similarity=0.234  Sum_probs=114.4

Q ss_pred             CccccccCC-------eEEcCCCCC---------cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEE
Q 040474            1 MTYNFIRPD-------LIVGSCLQT---------PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQH   64 (283)
Q Consensus         1 m~~~~I~~~-------l~lG~~p~~---------~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~   64 (283)
                      +|++||.++       |.++.+|..         +.+++.|+++||++||||+.+.|...++.+  ...+.+.. .|+.|
T Consensus        27 ~~~~~v~~~~~~~~g~l~~~~~Pg~~~~~~~~~~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~--~~~~~~~~-~gi~~  103 (212)
T 1fpz_A           27 IHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVP--NLLDLYQQ-CGIIT  103 (212)
T ss_dssp             CCCEEEECGGGTCCCEEEEESCTTCEETTEECCHHHHHHHHHHHTCCEEEECCCHHHHHHTTCT--THHHHHHH-TTCEE
T ss_pred             cceEEeccCCcCCCCeEEEecCCCCCCccchhhHHHHHHHHHHCCCCEEEEcCCHHHHHhcCCc--cHHHHHHH-cCCEE
Confidence            478899875       567777742         567899999999999999987654433322  11111222 58999


Q ss_pred             EEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHH-HhCCCHHHHHHHHHhhC-CCC-C
Q 040474           65 IRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW-VLGYKLNEAHQLLLSKR-PCF-P  141 (283)
Q Consensus        65 ~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~-~~~~~~~~A~~~v~~~r-~~~-p  141 (283)
                      +++|+.|...++. ..+..++++|...+. .+++|||||.+|+||||+++++|||. ..|+++++|++.|+++| +.+ +
T Consensus       104 ~~~pi~d~~~p~~-~~~~~~~~~i~~~~~-~~~~VlVHC~aG~gRTg~~~a~~L~~~~~g~~~~~a~~~vr~~R~~~~~~  181 (212)
T 1fpz_A          104 HHHPIADGGTPDI-ASCCEIMEELTTCLK-NYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQ  181 (212)
T ss_dssp             EECCCCTTCCCCH-HHHHHHHHHHHHHHH-TTCCEEEECSSSSSHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCTTSSC
T ss_pred             EEecCCCCCCCCH-HHHHHHHHHHHHHHh-CCCCEEEECCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999887765 467888999988874 57889999999999999999999998 47999999999999999 675 3


Q ss_pred             ChhHHHHhHHhhhhccccc
Q 040474          142 KLDAIKSATADILTGLRKE  160 (283)
Q Consensus       142 n~~~~~~~~~~~~~~~~~~  160 (283)
                      +     ..|+.++..|...
T Consensus       182 ~-----~~Q~~~l~~~~~~  195 (212)
T 1fpz_A          182 T-----IKQYNYLHEFRDK  195 (212)
T ss_dssp             S-----HHHHHHHTTHHHH
T ss_pred             C-----HHHHHHHHHHHHH
Confidence            3     3445556655443

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.87  E-value=4.3e-22  Score=171.20  Aligned_cols=84  Identities=23%  Similarity=0.440  Sum_probs=77.7

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCCccccceee-cCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcc
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFD-KEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVN  237 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~-~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~n  237 (283)
                      ..+++|+|..++ ++|+|+|||++|+..++|.+. .++|.|++++.|+||+|+|||+|||+|++||++|++ .|++|+.|
T Consensus         3 ~vpv~f~W~~~a-~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~-~d~~G~~n   80 (252)
T 2qlv_B            3 MVPVEIRWQQGG-SKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTA-TDQMGNFV   80 (252)
T ss_dssp             CEEEEEEECSCC-SCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEE-BCSSCCCE
T ss_pred             cEEEEEEEeCCC-cEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEE-ecCCCcCc
Confidence            478999999876 999999999999988999985 347899999999999999999999999999999987 69999999


Q ss_pred             eEEEecc
Q 040474          238 NYVQVDD  244 (283)
Q Consensus       238 n~i~v~~  244 (283)
                      |+|+|.+
T Consensus        81 Nvi~V~~   87 (252)
T 2qlv_B           81 NYIEVRQ   87 (252)
T ss_dssp             EEEEECC
T ss_pred             ceeeccC
Confidence            9999987

>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A

Probab=99.85  E-value=2.8e-21  Score=174.56  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=104.4

Q ss_pred             ccccccCCeEEcCC-CC-------------CcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEE
Q 040474            2 TYNFIRPDLIVGSC-LQ-------------TPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRA   67 (283)
Q Consensus         2 ~~~~I~~~l~lG~~-p~-------------~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~i   67 (283)
                      +++||+|++|+|+. |.             .+.+++.|+++||++||||+++..      +...+     ...|+.|+++
T Consensus       177 ~~~~I~p~~~i~~~~P~~~~~~~~~~~~~~~~~~~~~L~~~GI~~VInL~~~~y------~~~~~-----~~~gi~~~~i  245 (348)
T 1ohe_A          177 DLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMY------DAKRF-----TDAGFDHHDL  245 (348)
T ss_dssp             CEEEEETTTEEEECCCCSSCBCSTTCCBCCTHHHHHHHHHTTEEEEEECSCCSS------CTHHH-----HTTTCEEEEC
T ss_pred             CCCEEeCCeEEEECCCccccccccccccCCHHHHHHHHHHcCCCEEEECCCCcC------Chhhh-----hcCCcEEEEe
Confidence            67899999777754 31             123577899999999999996531      11111     1258999999


Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCC--C-CChh
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPC--F-PKLD  144 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~--~-pn~~  144 (283)
                      |+.|...+...    .+.+||+.. ...+++|||||.+|+||||+++++|||...|+++++|++.++++||.  + ||.+
T Consensus       246 pi~D~~~P~~~----~~~~fi~~~-~~~~~~VLVHC~aG~gRTGtvvaayLm~~~g~s~~eAl~~vr~~Rp~~i~~pnq~  320 (348)
T 1ohe_A          246 FFADGSTPTDA----IVKEFLDIC-ENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQ  320 (348)
T ss_dssp             CCCTTCCCCHH----HHHHHHHHH-HSCSSEEEEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCTHHHH
T ss_pred             cCCCCCCCCHH----HHHHHHHHH-HhCCCcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCccCHHHH
Confidence            99997655432    234566555 36788999999999999999999999998999999999999999995  3 8889


Q ss_pred             HHHHhHHhh
Q 040474          145 AIKSATADI  153 (283)
Q Consensus       145 ~~~~~~~~~  153 (283)
                      ++.+-+...
T Consensus       321 Fl~qL~~~~  329 (348)
T 1ohe_A          321 FLVMKQTNL  329 (348)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988744333

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}

Probab=99.84  E-value=1.5e-20  Score=153.29  Aligned_cols=118  Identities=15%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             cHH-HHH-hcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHH-cCCC
Q 040474           21 DVD-KLR-QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAIN-RNGG   97 (283)
Q Consensus        21 ~~~-~L~-~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~-~~~~   97 (283)
                      +.+ .|+ ..||++||||+.+..  .+  +...+..     .|+.|+++|+.|...++.. .+...++.+...+. ..++
T Consensus        45 ~~~~ll~~~~gi~~Vi~l~~~~~--~~--~~~~~~~-----~gi~~~~~~~~d~~~p~~~-~~~~~~~~~~~~~~~~~~~  114 (169)
T 1yn9_A           45 TAEQIVKQNPSIGAIIDLTNTSK--YY--DGVHFLR-----AGLLYKKIQVPGQTLPPES-IVQEFIDTVKEFTEKCPGM  114 (169)
T ss_dssp             CHHHHHHHCTTEEEEEECCSCSC--SC--CTHHHHH-----TTCEEEECCCCSSSCCCHH-HHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHhhCCCcCEEEEcCCCCC--CC--CHHHHHh-----cCCEEEEEeCCCCCCCCHH-HHHHHHHHHHHHHHhCCCC
Confidence            344 444 699999999986542  11  2222222     4899999999998765532 34445555555443 2578


Q ss_pred             EEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           98 VTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        98 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      +|+|||.+|+||||+++++|||...|+++++|++.++++|+.+ ||.+++.|
T Consensus       115 ~vlVHC~aG~~RTg~~va~~L~~~~~~~~~~a~~~~r~~R~~~~~~~~f~~q  166 (169)
T 1yn9_A          115 LVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQD  166 (169)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred             cEEEECCCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            9999999999999999999999889999999999999999996 99999887

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=99.84  E-value=5.5e-21  Score=154.95  Aligned_cols=122  Identities=19%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHc-----
Q 040474           20 EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINR-----   94 (283)
Q Consensus        20 ~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~-----   94 (283)
                      .+++.|+++||++||+|+.+...      ...+     ...++.|+++|+.|...++. ..+..++++++..++.     
T Consensus        38 ~~~~~l~~~gi~~Iv~l~~~~~~------~~~~-----~~~~i~~~~~p~~d~~~p~~-~~~~~~~~~i~~~~~~~~~~~  105 (167)
T 3s4o_A           38 TYIKELQHRGVRHLVRVCGPTYD------ATLV-----KSRGIDVHSWPFDDGAPPTR-AVLDSWLKLLDTELARQQEDP  105 (167)
T ss_dssp             HHHHHHHTTTEEEEEECSCCCSC------THHH-----HTTTCEEEECCCCTTCCCCH-HHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCCEEEECCCCCCC------HHHH-----HHCCCeEEEeccCCCCCCCH-HHHHHHHHHHHHHHHHHhhcc
Confidence            35678899999999999986321      1111     12589999999999877664 3456666666665532     


Q ss_pred             --CCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccc
Q 040474           95 --NGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLR  158 (283)
Q Consensus        95 --~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~  158 (283)
                        .+++|||||.+|+||||+++++|||...|+++++|++.+|++||...     ...|+.++..|.
T Consensus       106 ~~~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~R~~~v-----~~~Q~~fl~~~~  166 (167)
T 3s4o_A          106 SVPPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAI-----NQTQMHWITKYK  166 (167)
T ss_dssp             TCCCCEEEEECSSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHHSTTCS-----CHHHHHHHHHCC
T ss_pred             ccCCCcEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCC-----CHHHHHHHHhhC
Confidence              37899999999999999999999998779999999999999999863     245777777664

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=99.83  E-value=3.2e-20  Score=154.09  Aligned_cols=136  Identities=21%  Similarity=0.234  Sum_probs=103.7

Q ss_pred             CCeEEcCCCCC---cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHH
Q 040474            8 PDLIVGSCLQT---PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAV   84 (283)
Q Consensus         8 ~~l~lG~~p~~---~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~   84 (283)
                      ..+++...|..   +.+++.|+++||++||||+.+.+.      ...+.     ..++.|+++|+.|...+. ...+.++
T Consensus        37 ~r~I~tq~P~~~t~~~~~~~L~~~gi~~Iv~l~~~~~~------~~~~~-----~~~i~~~~~pi~d~~~~~-~~~~~~~  104 (189)
T 3rz2_A           37 MRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYD------TTLVE-----KEGIHVLDWPFDDGAPPS-NQIVDDW  104 (189)
T ss_dssp             EEEEEECCCCTTTHHHHHHHHHTTTEEEEEECSCCCSC------CHHHH-----HSSCEEEECCCCSSSCCC-SHHHHHH
T ss_pred             CeEEEeCCCCcccHHHHHHHHHHcCCcEEEEeCCCcCC------HHHHH-----HcCcEEEEecCCCCCCCC-HHHHHHH
Confidence            33555666533   346688999999999999976421      11111     158999999998866554 3467778


Q ss_pred             HHHHHHHH-HcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccce
Q 040474           85 ISKLYKAI-NRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKEL  161 (283)
Q Consensus        85 ~~~i~~~l-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~~  161 (283)
                      +++|...+ ...+++|||||.+|+||||+++++||| ..|+++++|++.++++||...+     ..|+.++..|....
T Consensus       105 ~~~i~~~~~~~~~~~VlVHC~aG~gRSg~~va~~L~-~~g~~~~~a~~~vr~~R~~~v~-----~~Q~~~l~~~~~~l  176 (189)
T 3rz2_A          105 LSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI-EGGMKYEDAVQFIRQKRRGAFN-----SKQLLYLEKYRPKM  176 (189)
T ss_dssp             HHHHHHHHHHSTTCEEEEECSSSSTTHHHHHHHHHH-TTTCCHHHHHHHHHTTSSSCCC-----HHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHCcCCCC-----HHHHHHHHHHHHHh
Confidence            88888775 356789999999999999999999999 6899999999999999998754     36667787776544

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=99.82  E-value=2.2e-19  Score=144.52  Aligned_cols=129  Identities=17%  Similarity=0.221  Sum_probs=97.8

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeE-EEEEeccCCCchhHhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQ-HIRAEIRDFDAFDLRM   79 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~-~~~ipi~D~~~~~~~~   79 (283)
                      ||+.+|.|+||+|+.+ ++.+++.|+++||++|||++++.|... ........+++.. .|+. |+++|+.|.....   
T Consensus        15 ~n~~~v~~~l~rs~~~-~~~d~~~L~~~Gi~~IIdlR~~~E~~~-~p~~~~~~~~~~~-~gi~~~~~iPv~~~~~~~---   88 (156)
T 2f46_A           15 MAILKLDEHLYISPQL-TKADAEQIAQLGIKTIICNRPDREEES-QPDFAQIKQWLEQ-AGVTGFHHQPVTARDIQK---   88 (156)
T ss_dssp             CCCEEEETTEEEESCC-CGGGHHHHHHHTCCEEEECSCTTSSTT-CCCHHHHHHHHGG-GTCCEEEECCCCTTTCCH---
T ss_pred             cCceeccCCEEEcCCC-CHHHHHHHHHCCCCEEEECCCCccccC-CCcHHHHHHHHHH-CCCHhheECccCCCCCCH---
Confidence            7899999999999996 899999999999999999997766421 1122333333333 5899 9999998753221   


Q ss_pred             hHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC
Q 040474           80 RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        80 ~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~  140 (283)
                         +.+..+.+.+...+++|||||.+|+ ||++++++|++ ..||+.++|++.+++..-..
T Consensus        89 ---~~~~~~~~~l~~~~~pVlvHC~sG~-Rs~~l~al~l~-~~g~~~~~a~~~~~~~g~~l  144 (156)
T 2f46_A           89 ---HDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFRRA-AEGMPVDEIIRRAQAAGVNL  144 (156)
T ss_dssp             ---HHHHHHHHHHHTSCSSEEEECSSSH-HHHHHHHHHHH-HTTCCHHHHHHHHHHTTCCC
T ss_pred             ---HHHHHHHHHHHhCCCCEEEECCCCC-CHHHHHHHHHH-HcCCCHHHHHHHHHHcCCCc
Confidence               1223333444455789999999999 99999888888 58999999999999886553

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A

Probab=99.80  E-value=5.7e-19  Score=141.83  Aligned_cols=132  Identities=21%  Similarity=0.237  Sum_probs=98.1

Q ss_pred             eEEcCCCCCcc---c-HHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHH
Q 040474           10 LIVGSCLQTPE---D-VDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVI   85 (283)
Q Consensus        10 l~lG~~p~~~~---~-~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~   85 (283)
                      +|.+..| ...   + .+.|+++||++||++++....      ...+.     ..++.|+++|+.|...+. ...+.+++
T Consensus        18 ~i~s~~p-~~~t~~df~~~l~~~gi~~Iv~l~~~~~~------~~~~~-----~~~~~~~~~p~~d~~~~~-~~~~~~~~   84 (159)
T 1rxd_A           18 FLITHNP-TNATLNKFIEELKKYGVTTIVRVCEATYD------TTLVE-----KEGIHVLDWPFDDGAPPS-NQIVDDWL   84 (159)
T ss_dssp             EEECCCC-CGGGHHHHHHHHHHTTEEEEEECSCCCSC------CHHHH-----HTTCEEEECCC--CCCCC-HHHHHHHH
T ss_pred             EEEeCCC-ccccHHHHHHHHHHcCCCEEEEcCCCccC------HHHHH-----HcCCEEEeCCCcCCCCCC-HHHHHHHH
Confidence            5666665 433   3 567899999999999876421      11111     248999999988866544 44677788


Q ss_pred             HHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccc
Q 040474           86 SKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKE  160 (283)
Q Consensus        86 ~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~  160 (283)
                      ++|...+.+ .+++|||||.+|+||||+++++|||. .|++.++|++.+++.|+.+.+.     .|+.++..|.+.
T Consensus        85 ~~i~~~~~~~~~~~vlVHC~aG~~Rtg~~~a~~l~~-~~~~~~~a~~~vr~~R~~~~~~-----~q~~~l~~~~~~  154 (159)
T 1rxd_A           85 SLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKRRGAFNS-----KQLLYLEKYRPK  154 (159)
T ss_dssp             HHHHHHHHHSTTCEEEEECSSSSTTHHHHHHHHHHH-TTCCHHHHHHHHHTTCTTCCCH-----HHHHHHHHCCCC
T ss_pred             HHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHH
Confidence            888887643 46899999999999999999999994 7999999999999999987543     455567666543

>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A

Probab=99.79  E-value=2.9e-19  Score=153.67  Aligned_cols=116  Identities=18%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             HHHHhc--CCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCC-CchhHhhhHHHHHHHHHHHHHc-CCCE
Q 040474           23 DKLRQI--GVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDF-DAFDLRMRLPAVISKLYKAINR-NGGV   98 (283)
Q Consensus        23 ~~L~~~--gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~-~~~~~~~~~~~~~~~i~~~l~~-~~~~   98 (283)
                      ..|+..  ||++||||+.+...  +  +...+.     ..++.|+++|+.|. ..++ ...+..+++++.+.+++ .+++
T Consensus        74 ~~l~~~~~~i~~VInL~~e~~~--y--~~~~~~-----~~gi~y~~~p~~D~~~~P~-~~~l~~~~~~i~~~~~~~~~~~  143 (241)
T 2c46_A           74 NYLKSLKVKMGLLVDLTNTSRF--Y--DRNDIE-----KEGIKYIKLQCKGHGECPT-TENTETFIRLCERFNERNPPEL  143 (241)
T ss_dssp             HHHHHHTCEEEEEEECSSCSCS--S--CTHHHH-----TTTCEEEECCCCCTTCCCC-HHHHHHHHHHHTTC-----CEE
T ss_pred             HHHHHhCCCcceeeeccCCCCC--C--CHHHHH-----HCCCEEEEEecCCCCCCCC-hHHHHHHHHHHHHHHHhCCCCe
Confidence            345555  99999999976421  1  222221     25899999999884 3443 23455666777666533 3589


Q ss_pred             EEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           99 TYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        99 VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      |+|||++|+||||++++||||+..++++++|++.++++|+.+ ++.+++.+
T Consensus       144 VlVHC~aG~gRTGt~ia~yLm~~~~~s~~eAi~~vr~~R~~~i~~~~~l~~  194 (241)
T 2c46_A          144 IGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKE  194 (241)
T ss_dssp             EEEECSSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            999999999999999999999889999999999999999985 88888776

>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1

Probab=99.76  E-value=5.7e-19  Score=158.39  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=97.4

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcE--------------EEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEE
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKT--------------IFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIR   66 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~--------------Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~   66 (283)
                      ||++||+|+|++|++| . .+.+.+.+.||++              |+|++.+..   +..          ..-+..+++
T Consensus        17 ldl~~It~~li~~~~P-~-~~~e~l~r~~i~~Vv~~l~~~~~~~~~v~nl~~e~~---y~~----------~~~~~~~~~   81 (324)
T 1d5r_A           17 LDLTYIYPNIIAMGFP-A-ERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERH---YDT----------AKFNCRVAQ   81 (324)
T ss_dssp             BSEEEEETTEEEECCC-B-SSCCTTCCCBHHHHHHHHHHHSSSCEEEEEEESSCC---CCT----------TSCSSCEEE
T ss_pred             cceEEEcCcEEEEeCC-C-CcchhhhccCHHHHHHHHHhcCCCcEEEEEcCCCCC---CCh----------HHhCCeEEE
Confidence            5899999999999998 3 3445554555554              555543221   000          112457899


Q ss_pred             EeccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCC-CHHHHHHHHHhhCCCCCChh
Q 040474           67 AEIRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGY-KLNEAHQLLLSKRPCFPKLD  144 (283)
Q Consensus        67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~-~~~~A~~~v~~~r~~~pn~~  144 (283)
                      +|++|...|+. ..+..+++.+...+.+ .+++|+|||++|+||||++++||||...++ ++++|+++++.+|+..|. +
T Consensus        82 ~~~~D~~~P~~-~~l~~~~~~i~~~l~~~~~~~VlVHC~aG~gRTGt~ia~yL~~~~~~~~~~eal~~~~~~R~~r~~-~  159 (324)
T 1d5r_A           82 YPFEDHNPPQL-ELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKK-G  159 (324)
T ss_dssp             EEECTTSCCCH-HHHHHHHHHHHHHHTTTSCSEEEEECSSSSHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHCSSSC-S
T ss_pred             EeecCCCCCcH-HHHHHHHHHHHHHHHhcCCCeEEEECCCCCChhHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCC-C
Confidence            99999988875 3566677777777643 468999999999999999999999988884 999999999988865322 1


Q ss_pred             HHHHhHHhhhh
Q 040474          145 AIKSATADILT  155 (283)
Q Consensus       145 ~~~~~~~~~~~  155 (283)
                      ...+.|+.++.
T Consensus       160 v~~~~Q~~yl~  170 (324)
T 1d5r_A          160 VTIPSQRRYVY  170 (324)
T ss_dssp             SCSHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            23334444443

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=99.69  E-value=1.9e-16  Score=127.40  Aligned_cols=135  Identities=18%  Similarity=0.209  Sum_probs=100.3

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +||++|.|+||+|++| .......|++.|++.||+++.+.+....    ++..+.+.. .|+.++++|+ |...+. ...
T Consensus        13 ~n~~~V~~~l~~s~~p-~~a~a~~La~~Ga~vvi~~r~~~e~~~~----~~~~~~~~~-~G~~~~~i~~-Dv~~~~-~~~   84 (157)
T 3gxh_A           13 RALQQQAPQLLSSGLP-NEQQFSLLKQAGVDVVINLMPDSSKDAH----PDEGKLVTQ-AGMDYVYIPV-DWQNPK-VED   84 (157)
T ss_dssp             TTCEEEETTEEEEBCC-CHHHHHHHHHTTCCEEEECSCTTSTTSC----TTHHHHHHH-TTCEEEECCC-CTTSCC-HHH
T ss_pred             cChheecCceeEcCCC-CHHHHHHHHHcCCCEEEECCCccccccc----ccHHHHHHH-cCCeEEEecC-CCCCCC-HHH
Confidence            5899999999999997 8889999999999999999876543211    011222222 4899999999 544441 113


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHh
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSA  149 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~  149 (283)
                      +..+++.+.+   ..|+.|||||.+| .|++++.++|++ ..|+++++| +.+++.||..||.+++++-
T Consensus        85 v~~~~~~i~~---~~G~dVLVnnAgg-~r~~~l~~~~~~-~~G~~~~~A-~~v~~~rpi~~~~~~w~~~  147 (157)
T 3gxh_A           85 VEAFFAAMDQ---HKGKDVLVHCLAN-YRASAFAYLYQL-KQGQNPNMA-QTMTPWNDELAIYPKWQAL  147 (157)
T ss_dssp             HHHHHHHHHH---TTTSCEEEECSBS-HHHHHHHHHHHH-HTTCCCCHH-HHTGGGTTCGGGCHHHHHH
T ss_pred             HHHHHHHHHh---cCCCCEEEECCCC-CCHHHHHHHHHH-HcCCCHHHH-HHHHhhCcccCCcHHHHHH
Confidence            3444444433   2355899999987 499999999997 699999999 9999999955888888763

>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A

Probab=99.59  E-value=3.7e-15  Score=133.66  Aligned_cols=125  Identities=17%  Similarity=0.215  Sum_probs=94.2

Q ss_pred             CccccccCCeEEcCCCCCcc------cH----HHHH--hcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEe
Q 040474            1 MTYNFIRPDLIVGSCLQTPE------DV----DKLR--QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAE   68 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~------~~----~~L~--~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ip   68 (283)
                      |++++|+++|+++++|....      ++    ..|.  ..+.-.|+||+.+..   +  +...       . +..++++|
T Consensus        25 LDltyIT~riIam~~P~~~~e~~yRn~i~dv~~~L~~~h~~~y~V~NL~sE~~---Y--d~~~-------f-~~~v~~~p   91 (339)
T 3v0d_A           25 LDLTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERG---Y--DETK-------F-DNHVYRVM   91 (339)
T ss_dssp             EEEEEEETTEEEECCEESSSCCTTSEEHHHHHHHHHHHSTTCEEEEEEETTCC---C--CGGG-------G-TTCEEEEE
T ss_pred             eeEEEEecCEEEEECCCCCchhhccCCHHHHHHHHHHhCCCceEEEECCCCCC---C--ChHH-------c-CCeEEEec
Confidence            57899999999999973321      12    2233  245678999975531   1  1111       1 24677899


Q ss_pred             ccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCC-CHHHHHHHHHhhCCC
Q 040474           69 IRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGY-KLNEAHQLLLSKRPC  139 (283)
Q Consensus        69 i~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~-~~~~A~~~v~~~r~~  139 (283)
                      ++|...|++. .+..+++.++..+++ .+++|+|||++|+||||++++||||....+ ++++|+++++.+|+.
T Consensus        92 ~pD~~~P~~~-~l~~~~~~v~~~l~~~~~~~v~vHC~~G~gRtg~~ia~~Li~~~~~~~~~~Al~~~~~~R~~  163 (339)
T 3v0d_A           92 IDDHNVPTLV-DLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTD  163 (339)
T ss_dssp             ECTTSCCCHH-HHHHHHHHHHHHHHTCTTCEEEEECSSSSHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHSS
T ss_pred             cCCCCCCCHH-HHHHHHHHHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence            9999888754 567788888888754 357999999999999999999999977777 899999999999984

>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus}

Probab=99.58  E-value=5.5e-15  Score=133.36  Aligned_cols=125  Identities=21%  Similarity=0.311  Sum_probs=92.0

Q ss_pred             CccccccCCeEEcCCCCCc---------ccH-HHHH--hcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEe
Q 040474            1 MTYNFIRPDLIVGSCLQTP---------EDV-DKLR--QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAE   68 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~---------~~~-~~L~--~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ip   68 (283)
                      ||+++|+++|++.++|...         +++ ..|.  ..|.-.|+||++..    |..  .       .. .-.++++|
T Consensus        22 LDltyIT~riIam~~P~~~~e~~yrn~i~~v~~~L~~~H~~~y~V~NLse~~----Yd~--~-------~f-~~~V~~~~   87 (361)
T 3n0a_A           22 LDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKS----YRT--A-------KF-HSRVSECS   87 (361)
T ss_dssp             CEEEESSSSEEEEEC------------CHHHHHHHHHHHTTCEEEEECSSSC----CGG--G-------SC-GGGEEECC
T ss_pred             ccEEEEcCCEEEEECCCCCchhhhcCCHHHHHHHHHHhCCCeEEEEECCCCC----CCh--h-------hc-CCcEEEee
Confidence            6899999999999997321         111 2333  23678899997532    111  0       11 22578899


Q ss_pred             ccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhCC-CHHHHHHHHHhhCCCC
Q 040474           69 IRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLGY-KLNEAHQLLLSKRPCF  140 (283)
Q Consensus        69 i~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~-~~~~A~~~v~~~r~~~  140 (283)
                      ++|...|++. .+..+++.++..+++ .++.|+|||++|+||||++++||||....+ ++++|+++++.+|+..
T Consensus        88 ~pD~~~P~l~-~l~~~~~~i~~~l~~~~~~~v~VHC~aG~GRtg~~ia~~Li~~~~~~~~~eAl~~~~~~R~~~  160 (361)
T 3n0a_A           88 WPIRQAPSLH-NLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGI  160 (361)
T ss_dssp             CCSSSCCCHH-HHHHHHHHHHHHHHHCTTCEEEEEECSCTHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHSTTC
T ss_pred             cCCCCCCCHH-HHHHHHHHHHHHHhcCCCCeEEEEeCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCC
Confidence            9999888744 566788888887754 457899999999999999999999976665 8999999999999874

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.55  E-value=1.3e-14  Score=142.57  Aligned_cols=81  Identities=12%  Similarity=0.045  Sum_probs=71.1

Q ss_pred             ccceEEEEeeCC-CcceEEEeeccCCCC-ccccceeecCCCeEEEEEecCCceEEEEEEECCEee--ecCCcceee--cC
Q 040474          158 RKELVTFSWKGK-NCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWT--CNKYELVSS--PN  231 (283)
Q Consensus       158 ~~~~v~f~w~~~-g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~--~d~~~~~~~--~~  231 (283)
                      .+.+|+|++... ++++|.|+||||+|+ ...||.+.  +|.|++++.||||+|+|||+|||+|+  +||++|...  .|
T Consensus        16 ~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~--~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~   93 (696)
T 4aee_A           16 GRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI--EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHT   93 (696)
T ss_dssp             EEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE--TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEEC
T ss_pred             CcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec--CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccccccc
Confidence            456889988884 369999999999996 56899887  79999999999999999999999999  778887765  78


Q ss_pred             CCCCcceEE
Q 040474          232 KDGHVNNYV  240 (283)
Q Consensus       232 ~~G~~nn~i  240 (283)
                      ++|+.|+|.
T Consensus        94 ~~g~~n~~~  102 (696)
T 4aee_A           94 SFFPEYKKC  102 (696)
T ss_dssp             SSCTTSEEE
T ss_pred             CCcccccee
Confidence            999999995

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=99.34  E-value=2.3e-12  Score=113.81  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=80.4

Q ss_pred             ccCC-eEEcCCCC--CcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCc-------h
Q 040474            6 IRPD-LIVGSCLQ--TPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDA-------F   75 (283)
Q Consensus         6 I~~~-l~lG~~p~--~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~-------~   75 (283)
                      |.++ ||.++.+.  +..+++.|+++||++||||+.+.|....+.+        ....|+.|+++|+.+...       +
T Consensus        42 vr~G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd--------~~~~Gi~~~~iPi~~~~~~~~~~~~p  113 (296)
T 1ywf_A           42 LRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSREVARRGPG--------RVPDGIDVHLLPFPDLADDDADDSAP  113 (296)
T ss_dssp             SCTTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSC--------CCCTTCEEEECCCCCSCC--------
T ss_pred             ccCcceeccCCcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCC--------CCCCCCEEEEecCccccccccccccc
Confidence            4456 89998863  3688899999999999999976543221111        123689999999976432       0


Q ss_pred             -------------------hH--------hhhH----H---------HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHH
Q 040474           76 -------------------DL--------RMRL----P---------AVISKLYKAINRNGGVTYVHCTAGLGRAPAVAL  115 (283)
Q Consensus        76 -------------------~~--------~~~~----~---------~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~  115 (283)
                                         +.        ...+    .         ..+..+.+.+.+ +++|||||.+|++|||.+++
T Consensus       114 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~l~~l~~-~~pvl~HC~aGkDRTG~~~a  192 (296)
T 1ywf_A          114 HETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLLAA-GRPVLTHCFAGKDRTGFVVA  192 (296)
T ss_dssp             -----------------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHT-TCCEEEECSSSSSHHHHHHH
T ss_pred             hhhHHHHHhhhcccccccchhhhcccchHHHHHHHHHHHHHhcchhHHHHHHHHHHhcc-CCCEEEECCCCCccccHHHH
Confidence                               00        0001    0         122223333333 78999999999999999988


Q ss_pred             HHHHHHhCCCHHHHHHHHH
Q 040474          116 AYMFWVLGYKLNEAHQLLL  134 (283)
Q Consensus       116 ayLm~~~~~~~~~A~~~v~  134 (283)
                      ++|. ..|++.+++++-..
T Consensus       193 lll~-~~g~~~~~I~~DY~  210 (296)
T 1ywf_A          193 LVLE-AVGLDRDVIVADYL  210 (296)
T ss_dssp             HHHH-HTTCCHHHHHHHHH
T ss_pred             HHHH-HcCCCHHHHHHHHH
Confidence            8877 79999999987443

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.15  E-value=8.5e-11  Score=114.50  Aligned_cols=78  Identities=18%  Similarity=0.247  Sum_probs=62.6

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceee---cCCCCC
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSS---PNKDGH  235 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~---~~~~G~  235 (283)
                      ..|.|.+...+ +.++|+|+||+|. ...+|.+  +++.|.+++.||||+|+|||+|||+|+.||.+|.+.   .++++.
T Consensus        17 ~~~~~~~~~~~-~~~yl~G~Fn~w~~~~~~m~~--~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~~   93 (645)
T 4aef_A           17 AEVEFSLIREG-SYAYLLGDFNAFNEGSFRMEQ--EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYKF   93 (645)
T ss_dssp             EEEEEEEECCS-SCEEEEETTTTTCTTSSEEEE--CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGTE
T ss_pred             EEEEEecCCCC-eEEEEEEcCCCCCCCcccceE--cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCcCc
Confidence            46778888776 7899999999998 4467765  478999999999999999999999999999998662   344555


Q ss_pred             cceEE
Q 040474          236 VNNYV  240 (283)
Q Consensus       236 ~nn~i  240 (283)
                      .+.+.
T Consensus        94 ~~~~~   98 (645)
T 4aef_A           94 HREVN   98 (645)
T ss_dssp             EEEEE
T ss_pred             cccee
Confidence            54443

>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein tyrosine phosphatase, inositol phosphate, I phosphatase; HET: IHP; 1.60A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 1u24_A 1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A 3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A

Probab=99.14  E-value=6.4e-11  Score=104.18  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=63.0

Q ss_pred             CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHH-HHHhCCCHHHHHHHHHhhCC
Q 040474           60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYM-FWVLGYKLNEAHQLLLSKRP  138 (283)
Q Consensus        60 ~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayL-m~~~~~~~~~A~~~v~~~r~  138 (283)
                      .|+.|+++|++|...|.. ..+...++++.. + ..++.|+|||.+|+|||++++++|+ |+..+++++++++.++....
T Consensus       180 ~Gl~Y~rlPi~D~~aP~~-e~id~fl~~v~~-l-~~~~~i~vHC~aG~GRTgt~ma~y~ll~~~~vs~eeii~r~~~lgg  256 (314)
T 3mmj_A          180 AGMRYFRIAATDHVWPTP-ENIDRFLAFYRT-L-PQDAWLHFHSEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGG  256 (314)
T ss_dssp             TTCEEEEEEECTTSCCCH-HHHHHHHHHHHT-C-CTTCEEEEECSSSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCcCCCCCCCH-HHHHHHHHHHHH-c-CCCCCEEEECCCCCchHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence            689999999999887763 346666666655 3 3467899999999999999999994 55579999999999998887


Q ss_pred             C
Q 040474          139 C  139 (283)
Q Consensus       139 ~  139 (283)
                      .
T Consensus       257 ~  257 (314)
T 3mmj_A          257 F  257 (314)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase, substrate specificity, residue shift, signaling protein; HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB: 1gwz_A

Probab=98.93  E-value=1.1e-09  Score=96.09  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHH----HHhC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMF----WVLG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm----~~~~----~~~~~A~~~v~~~r  137 (283)
                      +++|.+.|.....+...++.+.....  ..+++|+|||.+|+||||++++++++    ...|    ++..+++..+|+.|
T Consensus       174 ~WpD~~vP~~~~~~l~~~~~v~~~~~~~~~~~pivVHCsaGvGRTGtfia~~~~l~~l~~~g~~~~vdv~~~v~~lR~qR  253 (284)
T 1fpr_A          174 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQR  253 (284)
T ss_dssp             CSCTTSCCSCSHHHHHHHHHHHHHHTTSTTCCCEEEESSBSSHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHHhcCCCceecHHHHHHHHHhhC
Confidence            67787766533334344444433321  24689999999999999999998764    3345    68999999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       254 ~~~  256 (284)
T 1fpr_A          254 SGM  256 (284)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            985

>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida}

Probab=98.92  E-value=2.8e-09  Score=101.35  Aligned_cols=78  Identities=13%  Similarity=0.073  Sum_probs=64.4

Q ss_pred             CCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh--CCCHHHHHHHHHhh
Q 040474           59 YDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL--GYKLNEAHQLLLSK  136 (283)
Q Consensus        59 ~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~--~~~~~~A~~~v~~~  136 (283)
                      ..|+.|++||++|...|... .+...++++.. + ..++.++|||.+|+|||++++++|+|.+.  ++++++++..++..
T Consensus       198 ~~Gl~Y~Ripi~D~~~P~~e-~id~fl~~v~~-l-~~~~~i~vHC~AG~GRTgT~m~~y~m~k~~~~~s~~diI~Rq~~l  274 (629)
T 3f41_A          198 QHGANYFRLTLQDHFRPDDP-DVDKFLEFYKS-L-PKDAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDDIIQRQKLI  274 (629)
T ss_dssp             TTTCEEEEEEECTTSCCCHH-HHHHHHHHHHT-S-CTTCEEEEECSSSSHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             hCCCeEEEccCCCCCCCCHH-HHHHHHHHHHh-c-CCCCCEEEECCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence            46999999999999877643 46667777766 3 34678999999999999999999988665  79999999998887


Q ss_pred             CCC
Q 040474          137 RPC  139 (283)
Q Consensus       137 r~~  139 (283)
                      -..
T Consensus       275 gg~  277 (629)
T 3f41_A          275 GIV  277 (629)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            664

>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida}

Probab=98.91  E-value=2.8e-09  Score=101.33  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-hCCCHHHHHHHHHhhCC
Q 040474           60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRP  138 (283)
Q Consensus        60 ~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~v~~~r~  138 (283)
                      .|+.|+++|+.|...|... .+...++++...  ..++.++|||.+|+|||++++++|+|.+ .+++++++++.+...-.
T Consensus       497 ~Gi~Y~Ripi~D~~aP~~e-~id~fl~~v~~l--p~~~~v~vHC~aG~GRTtT~mv~y~m~k~~~~s~~dii~rq~~lgg  573 (629)
T 3f41_A          497 NGLHYYRIAATDHIWPSAA-NIDEFINFTRTM--PANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDILSRQYLLGG  573 (629)
T ss_dssp             TTCEEEEEEECTTSCCCHH-HHHHHHHHHHHS--CTTCEEEEECSSSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCCCCCCCHH-HHHHHHHHHHhc--CCCCCEEEeCCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhhCc
Confidence            6899999999999877643 467777877763  3467899999999999999999996654 48999999999988775


Q ss_pred             C
Q 040474          139 C  139 (283)
Q Consensus       139 ~  139 (283)
                      .
T Consensus       574 ~  574 (629)
T 3f41_A          574 N  574 (629)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase activating protein, 4-helix bundle, disorder, signaling protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1 c.45.1.2 PDB: 1g4u_S

Probab=98.89  E-value=1.3e-09  Score=99.53  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             eEEEEEe-ccCCCchhHhhhHHHHHHHHHHHHH--------cCCCEEEEEcCCCCChhHHHHHHHHHHHh-CCCHHHHHH
Q 040474           62 IQHIRAE-IRDFDAFDLRMRLPAVISKLYKAIN--------RNGGVTYVHCTAGLGRAPAVALAYMFWVL-GYKLNEAHQ  131 (283)
Q Consensus        62 i~~~~ip-i~D~~~~~~~~~~~~~~~~i~~~l~--------~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-~~~~~~A~~  131 (283)
                      +.+++++ ++|.+.|.....|...++.+.....        ...++|+|||.+|+||||+++++++|... .++..+++.
T Consensus       271 V~h~~y~~WpD~gvP~~~~~ll~~i~~v~~~~~~~~~~~~~~~~~PivVHCsAGvGRTGtfiaidll~~~~~vdv~~~v~  350 (383)
T 1g4w_R          271 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA  350 (383)
T ss_dssp             EEEEEECSCCTTSCCSSHHHHHHHHHHHHTSCCCCCTTCSCTTSSCCEEESSSSSHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred             EEEEeeCCcCCcCCCCCHHHHHHHHHHHHHHHhhhccccccCCCCCEEEEeCcCCcHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            5566666 7887776533334334444333211        01367999999999999999999998654 489999999


Q ss_pred             HHHhhCCC
Q 040474          132 LLLSKRPC  139 (283)
Q Consensus       132 ~v~~~r~~  139 (283)
                      .+|..|+.
T Consensus       351 ~lR~qR~g  358 (383)
T 1g4w_R          351 DFRDSRNN  358 (383)
T ss_dssp             HHHHHTCT
T ss_pred             HHHhhCCC
Confidence            99999994

>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU genomics, structural genomics consortium, SGC, hydrolase; 1.54A {Homo sapiens}

Probab=98.88  E-value=3.2e-09  Score=93.31  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=52.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHH---Hh--CCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW---VL--GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~---~~--~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|+....|.+.++.+.... ..+++|+|||.+|+||||++++++++.   ..  .++..+++..+|+.|+..
T Consensus       182 ~WpD~gvP~~~~~~l~~i~~v~~~~-~~~~PivVHCsaGvGRTGtfia~d~~~~~l~~~~~v~~~~~v~~lR~qR~~~  258 (287)
T 2b49_A          182 AWPDHGVPDDSSDFLEFVNYVRSLR-VDSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMM  258 (287)
T ss_dssp             CSCSSSCCSSCHHHHHHHHHHHHHC-CTTCCEEEECSSSSHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhc-cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccc
Confidence            6778777654334555555555442 346899999999999999999876432   12  378999999999999985

>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11, tyrosine phosphatase, structural genomics, STR genomics consortium, SGC, deafness; 1.60A {Homo sapiens} PDB: 3jrl_A* 3mow_A* 3o5x_A*

Probab=98.87  E-value=4.8e-09  Score=93.36  Aligned_cols=74  Identities=18%  Similarity=0.260  Sum_probs=53.0

Q ss_pred             EeccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHH----HhC----CCHHHHHHHHHhh
Q 040474           67 AEIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFW----VLG----YKLNEAHQLLLSK  136 (283)
Q Consensus        67 ipi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~----~~~----~~~~~A~~~v~~~  136 (283)
                      .+++|.+.|.....+...++.+.....  ..+++|+|||.+|+||||++++++++.    ..|    ++..+++..+|+.
T Consensus       208 ~~WpD~gvP~~~~~~l~fl~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~g~~~~vdv~~~v~~lR~q  287 (316)
T 3b7o_A          208 RTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQ  287 (316)
T ss_dssp             CCCCSSSCCSSSHHHHHHHHHHHHHHHTSTTCCCEEEEESSSSHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHTT
T ss_pred             cCcccCCCCCChHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCcHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHh
Confidence            467887776543334444444433221  246899999999999999999987642    345    6899999999999


Q ss_pred             CCCC
Q 040474          137 RPCF  140 (283)
Q Consensus       137 r~~~  140 (283)
                      |+..
T Consensus       288 R~~~  291 (316)
T 3b7o_A          288 RSGM  291 (316)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            9985

>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine phosphatase, human, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.86  E-value=4.1e-09  Score=93.28  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHH----HHHHh----CCCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAY----MFWVL----GYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ay----Lm~~~----~~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|.....|.+.++.+........++|+|||.+|+||||++++++    ++...    .++..+++..+|+.|+.
T Consensus       198 ~WpD~gvP~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~~~~ll~~~~~~~vdv~~~v~~lR~qR~~  277 (303)
T 2oc3_A          198 SWPDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPA  277 (303)
T ss_dssp             CCCSSSCCSCSHHHHHHHHHHHHHHCSSCCCEEEECSSSSHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHTTSTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcceeEEEeHHHHHHHHHhcccCCCcCHHHHHHHHHhhccc
Confidence            46777666533333333333333322246899999999999999999988    55432    46889999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       278 ~  278 (303)
T 2oc3_A          278 A  278 (303)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase, phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2

Probab=98.86  E-value=2e-09  Score=92.92  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHH-HcCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHH
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAI-NRNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLL  134 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~  134 (283)
                      +.++++ .++|.+.|.....+.+.++.+.+.. ...+++|+|||.+|+||||+++++++|...     .++..+++..+|
T Consensus       140 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~pivVHCsaGvGRTGtfia~~~~~~~l~~~~~vdv~~~v~~lR  219 (253)
T 1p15_A          140 IRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLR  219 (253)
T ss_dssp             EEEEEECCSCSSSCCSSSCSHHHHHHHHHHHTTTTTSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSCCCTTHHHHHHH
T ss_pred             EEEeeeCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCCEEEEcCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            344444 5678776653334444444443321 124689999999999999999999876543     578889999999


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      +.|+..
T Consensus       220 ~qR~~~  225 (253)
T 1p15_A          220 LQRPHM  225 (253)
T ss_dssp             TTSTTS
T ss_pred             HhCccc
Confidence            999985

>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP, tyrosine phosphatase, MEG-1, structural genomics structural genomics consortium, SGC; 2.45A {Homo sapiens}

Probab=98.84  E-value=1.7e-08  Score=89.92  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=51.5

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHH---H--hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW---V--LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~---~--~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+.+.+..+.......+++|+|||.+|+||||+++++..+.   .  ..++..+++..+|+.|+..
T Consensus       209 ~WPD~gvP~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~v~~~~~v~~lR~qR~~~  286 (320)
T 2i75_A          209 AWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPVVVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMM  286 (320)
T ss_dssp             CCCSSSSCSCTHHHHHHHHHHHHHHTTCCSCEEEECSSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSTTC
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhccCCCCEEEEcCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcCC
Confidence            56787766533344444554444332346899999999999999998864321   2  2468999999999999985

>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine phosphatase, lymphoid phosphatase, PEP, LYP, struct genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A* 2qcj_A* 3olr_A* 3omh_A*

Probab=98.83  E-value=7.5e-09  Score=91.81  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHH---HhC-----CCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW---VLG-----YKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~---~~~-----~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|.....+.+.+..+.......+++|+|||.+|+||||+++++..+.   ..|     ++..+++..+|..|+.
T Consensus       192 ~WPD~gvP~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~~~~l~~~~~~~~~dv~~~v~~lR~qR~~  271 (309)
T 2p6x_A          192 NWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPS  271 (309)
T ss_dssp             CCCCTTCGGGGHHHHHHHHHHHHHCCSCSSCEEEECSSSSSHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHTTSTT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhccCCCcEEEEeCCCCcHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHhCcc
Confidence            56787777644334333443333222246899999999999999998876432   333     6899999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       272 ~  272 (309)
T 2p6x_A          272 L  272 (309)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine phosphatase, glepp1, PTPU2, structural genom structural genomics consortium, SGC; 2.15A {Homo sapiens} PDB: 2g59_A 2pi7_A

Probab=98.83  E-value=6.8e-09  Score=91.55  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             eccCCCchhH--hhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHH-HHHHH----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDL--RMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALA-YMFWV----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~--~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~a-yLm~~----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|..  ...+.+.++.+.......+++|+|||.+|+||||+++++ ++|..    ..++..+++..+|..|+..
T Consensus       186 ~WPD~gvP~~~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~ll~~l~~~~~vdv~~~v~~lR~qR~~~  265 (295)
T 2gjt_A          186 AWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSM  265 (295)
T ss_dssp             CCCCSSSCCHHHHHHHHHHHHHHHHHHHHCCSCEEEESSSSSHHHHHHHHHHHHHHHHHHCSEECHHHHHHHHHTTSTTS
T ss_pred             CCCCCCCCCcccHHHHHHHHHHHHHhhccCCCcEEEEECCCCccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccc
Confidence            5678776653  122333333333332346789999999999999998877 45533    2468999999999999985

>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine phosphatase, human, structural GE structural genomics consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo sapiens} PDB: 1rpm_A 2c7s_A

Probab=98.83  E-value=3.6e-09  Score=92.92  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHh
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLS  135 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~  135 (283)
                      +.++++ .++|.+.|.....+.+.++.+.......+++|+|||.+|+||||+++++++|..     ...+..+++..+|.
T Consensus       177 V~h~~y~~WpD~gvP~~~~~ll~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiai~~~l~~l~~~~~vdv~~~v~~lR~  256 (286)
T 2ooq_A          177 LRLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELRA  256 (286)
T ss_dssp             EEEEEECSCCTTCCCSCSHHHHHHHHHHHHHSCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCcHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence            344443 467777665332333333333322112468999999999999999999887643     24688999999999


Q ss_pred             hCCCC
Q 040474          136 KRPCF  140 (283)
Q Consensus       136 ~r~~~  140 (283)
                      .|+..
T Consensus       257 qR~~~  261 (286)
T 2ooq_A          257 QRVNL  261 (286)
T ss_dssp             HSTTS
T ss_pred             hCccc
Confidence            99985

>4grz_A Tyrosine-protein phosphatase non-receptor type 6; phosphatase domain, hydrolase; 1.37A {Homo sapiens} PDB: 4gry_A 4gs0_A* 1gwz_A 1fpr_A*

Probab=98.83  E-value=8e-09  Score=90.76  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHH----hC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWV----LG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~----~~----~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....+...++.+.....  ...++|+|||.+|+||||++++++++..    .|    ++..+++..+|..|
T Consensus       176 ~Wpd~gvP~~~~~~l~~~~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~~~vdv~~~v~~lR~qR  255 (288)
T 4grz_A          176 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQR  255 (288)
T ss_dssp             SCCTTSCCSSSHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHTTS
T ss_pred             CcCcCCcccChHHHHHHHHHHHHHHhhcCCCCcEEEEeCCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhc
Confidence            46777766533344444444443322  2468999999999999999998887532    34    78999999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       256 ~~~  258 (288)
T 4grz_A          256 SGM  258 (288)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            985

>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein tyrosine phosphatase precursor, phosph structural genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A

Probab=98.83  E-value=4.6e-09  Score=92.91  Aligned_cols=73  Identities=18%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH---h---CCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV---L---GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~---~---~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....|.+.++.+.......+++|+|||.+|+||||+++++.++..   .   .++..+++..+|..|+..
T Consensus       196 ~WPD~gvP~~~~~ll~~~~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~vdv~~~v~~lR~qR~~~  274 (301)
T 2i1y_A          196 SWPAEGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGL  274 (301)
T ss_dssp             CCCSSSBCSCSHHHHHHHHHHHHSCCCSSCCEEEECSSSSHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHTTSTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCchhHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCccc
Confidence            467777665333333333333322112467999999999999999998876532   2   378999999999999985

>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase, phosphate ION, colorectal cancer alternative splicing, coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP: c.45.1.2

Probab=98.82  E-value=8.5e-09  Score=91.69  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=51.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+...++.+...  ..+++|+|||.+|+||||++++++++..     ..++..+++..+|..|+..
T Consensus       213 ~WPD~gvP~~~~~ll~~i~~v~~~--~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~lR~qR~~~  288 (315)
T 1wch_A          213 AWPDHDTPSQPDDLLTFISYMRHI--HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGM  288 (315)
T ss_dssp             SCCTTSCCSCHHHHHHHHHHHHHH--CCSSCEEEECSSSSHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSTTC
T ss_pred             ecCCCCCCCCHHHHHHHHHHHHhh--CCCCCEEEEcCCCCcHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccc
Confidence            567777665333444444444332  3468999999999999999988876532     2578999999999999985

>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R; PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase; 1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A

Probab=98.82  E-value=1.8e-08  Score=88.95  Aligned_cols=79  Identities=18%  Similarity=0.126  Sum_probs=55.2

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHH
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLL  133 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v  133 (283)
                      +.++++ .++|.+.|+....|.+.+..+.....  ..+++|+|||.+|+||||++++++++..     ..++..+++..+
T Consensus       185 V~h~~y~~WPD~gvP~~~~~ll~~i~~v~~~~~~~~~~~PivVHCsaGvGRTGtfia~~~~~~~l~~~~~vdv~~~v~~l  264 (297)
T 1jln_A          185 VKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQL  264 (297)
T ss_dssp             EEEEEECCSCTTSSCSCSHHHHHHHHHHHHHHHTCTTSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred             EEEccccCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEeCCCchhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            334444 46787776544344444555443321  2468999999999999999998876432     247899999999


Q ss_pred             HhhCCCC
Q 040474          134 LSKRPCF  140 (283)
Q Consensus       134 ~~~r~~~  140 (283)
                      |..|+..
T Consensus       265 R~qR~~~  271 (297)
T 1jln_A          265 RVDRGGM  271 (297)
T ss_dssp             HHHSTTS
T ss_pred             HHhCcCc
Confidence            9999985

>4az1_A Tyrosine specific protein phosphatase; hydrolase, drug design; 2.18A {Trypanosoma cruzi}

Probab=98.81  E-value=7e-09  Score=91.75  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=50.8

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh-------CCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL-------GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-------~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+.+.+..+...  ..+++|+|||.+|+||||++++++++...       .++..+++..+|..|+..
T Consensus       193 ~Wpd~gvP~~~~~~l~~~~~v~~~--~~~~PivVHCsaGvGRTGtfiai~~~~~~l~~~~~~~~~v~~~v~~lR~qR~~~  270 (302)
T 4az1_A          193 GWPDHGIPQSATSLEALLTNVKNS--PTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGM  270 (302)
T ss_dssp             SSCTTSCCSCHHHHHHHHHHHHHS--CTTSCEEEESSSSSSHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHSTTC
T ss_pred             CCCcCCccCCHHHHHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhcCccc
Confidence            356777665333333333333322  14589999999999999999998876543       377899999999999985

>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal transduction, glycoprotein, phosphorylation, signal; 2.25A {Mus musculus} SCOP: c.45.1.2

Probab=98.81  E-value=4.4e-09  Score=93.03  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=53.6

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHh
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLS  135 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~  135 (283)
                      +.++++ .++|.+.|.....+.+.++.+.......+++|+|||.+|+||||++++++++..     ..++..+++..+|.
T Consensus       190 V~h~~y~~WpD~gvP~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~lR~  269 (302)
T 1yfo_A          190 ITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRA  269 (302)
T ss_dssp             EEEEEECCCCSSSCCSCSHHHHHHHHHHHHHSCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHSSEECHHHHHHHHTT
T ss_pred             EEEEeecccCCCCcCCCHHHHHHHHHHHHHhccCCCCCEEEECCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            333433 567777665333343334433332222468999999999999999998876532     25789999999999


Q ss_pred             hCCCC
Q 040474          136 KRPCF  140 (283)
Q Consensus       136 ~r~~~  140 (283)
                      .|+..
T Consensus       270 qR~~~  274 (302)
T 1yfo_A          270 QRCQM  274 (302)
T ss_dssp             TSTTS
T ss_pred             hcccc
Confidence            99985

>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism, phosphorylation, endoplasmic reticulum, oxidation, hydrolase, acetylation; 1.5A {Homo sapiens} SCOP: c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A 2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A* 2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A* 2zn7_A* ...

Probab=98.79  E-value=1e-08  Score=90.77  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHH--HcCCCEEEEEcCCCCChhHHHHHHH----HHHHh----CCCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAI--NRNGGVTYVHCTAGLGRAPAVALAY----MFWVL----GYKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l--~~~~~~VlVHC~~G~~RS~~v~~ay----Lm~~~----~~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....|...+..+....  ...+++|+|||.+|+||||++++++    ++...    .++..+++..+|..|
T Consensus       184 ~WpD~gvP~~~~~~l~~l~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~~~vdv~~~v~~lR~qR  263 (304)
T 2cm2_A          184 TWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFR  263 (304)
T ss_dssp             CCCSSSCCSSSHHHHHHHHHHHHHTTTSTTSBCEEEESSSSSSHHHHHHHHHHHHHHHHHSSCGGGCCHHHHHHHHTTTS
T ss_pred             CcCcCCCCCCHHHHHHHHHHHHHHhhccCCCCcEEEEcCcCCchhhHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHhc
Confidence            3577766643323333333332221  1246799999999999999998875    34444    378999999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       264 ~~~  266 (304)
T 2cm2_A          264 MGL  266 (304)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            985

>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine phosphatase, WPD-loop, sulfamic acid, inhibitor, drug design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A 2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A* 2i4h_A* 2i5x_A* 2ahs_A

Probab=98.77  E-value=1.1e-08  Score=90.01  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=54.3

Q ss_pred             eEEEEEe-ccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHH
Q 040474           62 IQHIRAE-IRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLL  133 (283)
Q Consensus        62 i~~~~ip-i~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v  133 (283)
                      +.++++. ++|.+.|.-...+.+.+..+...+.  ..+++|+|||.+|+||||++++++++...     ..+..+++..+
T Consensus       181 V~h~~y~~WPD~gvP~~~~~ll~~i~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiai~~~l~~l~~~~~vdv~~~v~~l  260 (291)
T 2hc1_A          181 IRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDL  260 (291)
T ss_dssp             EEEEEECCCCSSSCCSCHHHHHHHHHHHHHHHHHSSCCCCEEEECSSSSHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred             EEEeeecCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCchhHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            4444443 5777766533334444444433322  24679999999999999999998876432     47888999999


Q ss_pred             HhhCCCC
Q 040474          134 LSKRPCF  140 (283)
Q Consensus       134 ~~~r~~~  140 (283)
                      |..|+..
T Consensus       261 R~qR~~~  267 (291)
T 2hc1_A          261 RLHRVHM  267 (291)
T ss_dssp             HTTSTTS
T ss_pred             HHhCccc
Confidence            9999985

>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase, STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB: 2bij_A 2bv5_A*

Probab=98.74  E-value=2e-08  Score=88.92  Aligned_cols=73  Identities=16%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHH---HcCCCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAI---NRNGGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l---~~~~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|+....|.+.+..+....   ....++|+|||.+|+||||+++++.++.     ...++..+++..+|..|+.
T Consensus       200 ~WPD~gvP~~~~~ll~~i~~v~~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~lR~qR~~  279 (305)
T 2cjz_A          200 SWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGG  279 (305)
T ss_dssp             CCCSSCCGGGHHHHHHHHHHHHHHHHHTCSSCCCEEEEESSSSHHHHHHHHHHHHHHHHHHHSCBCHHHHHHHHHHHSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCEEEEeCCCcchhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHhCcc
Confidence            4678777754444444454444311   1246899999999999999999887653     2467899999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       280 ~  280 (305)
T 2cjz_A          280 M  280 (305)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14, hydrolase; 1.65A {Homo sapiens}

Probab=98.74  E-value=2.6e-08  Score=88.95  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHH----------HcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHH
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAI----------NRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQL  132 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l----------~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~  132 (283)
                      .++|.+.|.-...|...++.+....          ...+++|+|||.+|+||||+++++.++..     ..++..+++..
T Consensus       214 ~WPD~gvP~~~~~~l~fl~~v~~~~~~~~~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~  293 (325)
T 2bzl_A          214 DWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRL  293 (325)
T ss_dssp             CCCSSSCCSCHHHHHHHHHHHHHHHHHHTGGGTTSCCCCCCEEEESSSSSHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccCCCCCEEEEeCCCCcHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4677776653333433444333221          12468999999999999999998887643     25789999999


Q ss_pred             HHhhCCCC
Q 040474          133 LLSKRPCF  140 (283)
Q Consensus       133 v~~~r~~~  140 (283)
                      +|+.|+..
T Consensus       294 lR~qR~~~  301 (325)
T 2bzl_A          294 LREQRMFM  301 (325)
T ss_dssp             HHTTSTTC
T ss_pred             HHHhcccC
Confidence            99999985

>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor phosphatase, human, structural GENO structural genomics consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB: 3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A* 3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A* 3qcn_A

Probab=98.73  E-value=1.1e-08  Score=91.20  Aligned_cols=70  Identities=16%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH---cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN---RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|...   ..+++++.....   ...++|+|||.+|+||||+++++.++..     ..++..+++..+|..|+.
T Consensus       218 ~WPD~gvP~~~---~~~l~~i~~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~lR~qR~~  294 (320)
T 2h4v_A          218 QWPDMGVPEYA---LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY  294 (320)
T ss_dssp             CCCSSSSCSCS---HHHHHHHHHHHHTCCTTCCCEEEESSSSSHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTTTSTT
T ss_pred             CCCcCCCCCCH---HHHHHHHHHHHhhccCCCCCEEEECCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcc
Confidence            56787766533   234455544321   2458999999999999999988876643     247899999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       295 ~  295 (320)
T 2h4v_A          295 L  295 (320)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo sapiens} SCOP: c.45.1.2

Probab=98.72  E-value=1.8e-08  Score=89.51  Aligned_cols=70  Identities=20%  Similarity=0.310  Sum_probs=49.4

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-----cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-----RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-----~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....   +++++....+     ..+++|+|||.+|+||||++++++++..     ..+++.+++..+|..|
T Consensus       179 ~WpD~gvP~~~~~---~l~~l~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~lR~qR  255 (314)
T 1l8k_A          179 TWPDFGVPESPAS---FLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYR  255 (314)
T ss_dssp             CCCSSSCCSCSHH---HHHHHHHHHHTTTTSTTSCCEEEEESSSSSHHHHHHHHHHHHHHSSSSCCCCHHHHHHHHTTTB
T ss_pred             CCCCCCCCCCHHH---HHHHHHHHHHHhhccCCCCcEEEEcCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            4577766643323   3444443321     2368999999999999999998865432     2478999999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       256 ~~~  258 (314)
T 1l8k_A          256 MGL  258 (314)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            985

>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis, signal transduction, developm protein, hydrolase; 2.40A {Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*

Probab=98.71  E-value=2.2e-08  Score=88.78  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|+....+.+.+..+........++|+|||.+|+||||+++++..+..+     ..+..+++..+|+.|+..
T Consensus       207 ~WPD~gvP~~~~~ll~fi~~v~~~~~~~~~PIvVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~V~~lR~qR~~m  284 (307)
T 3s3e_A          207 TWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWM  284 (307)
T ss_dssp             CCCSSSCCSSTHHHHHHHHHHHHHHCSCCSCEEEECSSSSHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHSTTS
T ss_pred             CcccCCCCCChHHHHHHHHHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhhCCCC
Confidence            4567766654434444555555444345679999999999999998888766432     357889999999999985

>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine phosphatase, hydrolase; 2.39A {Trypanosoma brucei}

Probab=98.70  E-value=1.7e-08  Score=89.50  Aligned_cols=70  Identities=20%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHH---h--CCC--HHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWV---L--GYK--LNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~---~--~~~--~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|.....+   ++++....+ ..+++|+|||.+|+||||++++++++..   .  ..+  ..+++..+|..|+.
T Consensus       196 ~WpD~gvP~~~~~~---l~~~~~v~~~~~~~PivVHCsaGvGRTGtfiai~~~l~~l~~~~~~d~~v~~~v~~lR~qR~~  272 (306)
T 3m4u_A          196 GWPDHGVPESAASF---DELLSVIKNCVTTSPILVHCSAGIGRTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFG  272 (306)
T ss_dssp             SCCTTSCCSCHHHH---HHHHHHHHTCCCSSCEEEECSSSSHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHSTT
T ss_pred             CCCCCCCCCCHHHH---HHHHHHHHhhCCCCCEEEEcCCCCcchheeehHHHHHHHHHcCCCcchHHHHHHHHHHhcCcc
Confidence            56777766533333   444433321 1358999999999999999998887642   2  345  77999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       273 ~  273 (306)
T 3m4u_A          273 M  273 (306)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human tyrosine phosphatase catalytic domain, LC-PTP, hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A 2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A* 3d42_A* 2a3k_A

Probab=98.68  E-value=1.4e-08  Score=90.07  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=50.9

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-----cCCCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-----RNGGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-----~~~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|+..   ..+++++....+     ..+++|+|||.+|+||||++++++++.     ...++..+++..+|..|
T Consensus       203 ~WpD~gvP~~~---~~ll~~i~~v~~~~~~~~~~~PIvVHCsaGvGRTGtfiai~~~l~~l~~~~~vdv~~~v~~lR~qR  279 (309)
T 1zc0_A          203 AWPDHQTPESA---GPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDR  279 (309)
T ss_dssp             SCCTTSCCSCH---HHHHHHHHHHHTSCCCCSSCCCEEEEESSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHS
T ss_pred             cccCCCCCCCH---HHHHHHHHHHHHHHhhcCCCCCEEEEeCCCcchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhC
Confidence            45777766533   333444443321     246899999999999999999988753     23578999999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       280 ~~~  282 (309)
T 1zc0_A          280 GGM  282 (309)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            985

>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A {Rattus norvegicus} PDB: 2nz6_A 2cfv_A

Probab=98.63  E-value=4.9e-08  Score=87.75  Aligned_cols=73  Identities=18%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+...+..+.....  ..+++|+|||.+|+||||+++++.++.     ....+..+++..+|..|+..
T Consensus       207 ~WPD~gvP~~~~~ll~f~~~v~~~~~~~~~~~PiVVHCSAGvGRTGtfiaid~~l~~l~~~~~vdv~~~V~~lR~qR~~m  286 (342)
T 3i36_A          207 SWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLM  286 (342)
T ss_dssp             CSCSSSSCSCSHHHHHHHHHHHHHHTTSCSSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred             CcCcCCCCCCHHHHHHHHHHHHHHHHhCCCCCCEEEEcCCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCccc
Confidence            55777776544344444444444332  236799999999999999988877553     23578999999999999985

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=98.62  E-value=8.6e-08  Score=91.20  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHH----hC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWV----LG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~----~~----~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....+...++.+.....  ..+++|+|||.+|+||||+++++.++..    .+    ++..+++..+|..|
T Consensus       416 ~Wpd~gvP~~~~~~l~~~~~v~~~~~~~~~~~PivVHCsaG~GRTGtfia~d~~~~~l~~~~~~~~vdv~~~v~~lR~qR  495 (532)
T 2b3o_A          416 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQR  495 (532)
T ss_dssp             CCCSSSCCSSSHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSSHHHHHHHHHHHHHHHHHSCTTSCCCHHHHHHHHTTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHhhC
Confidence            46777766533334334444433221  2468999999999999999998876543    24    78999999999999


Q ss_pred             CCC-CCh
Q 040474          138 PCF-PKL  143 (283)
Q Consensus       138 ~~~-pn~  143 (283)
                      +.. .+.
T Consensus       496 ~~~Vqt~  502 (532)
T 2b3o_A          496 SGMVQTE  502 (532)
T ss_dssp             TTSSCSH
T ss_pred             cccCCCH
Confidence            985 443

>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A {Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A* 1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A* 1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A* 1pa9_A* 1yts_A

Probab=98.56  E-value=1.4e-07  Score=83.44  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHHHh---CCCHHHHHHHHHhhCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFWVL---GYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~---~~~~~~A~~~v~~~r~~  139 (283)
                      .++++|||.+|+||||+++++.++...   .++..+++..+|..|+.
T Consensus       234 ~~piVVHCSAGvGRTGtfiaid~ll~~~~~~vdv~~~V~~lR~qR~~  280 (306)
T 1lyv_A          234 KLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG  280 (306)
T ss_dssp             SSCCEEECSSSSSHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHTCT
T ss_pred             CCCcEEEcCCCCchhHHHHHHHHHHHhhcCCCCHHHHHHHHHhcCCc
Confidence            457899999999999999888776443   68899999999999996

>4i8n_A Tyrosine-protein phosphatase non-receptor type 1; PTP1B, hydrolase-hydrolase inhibitor CO; HET: 1CG; 2.50A {Homo sapiens}

Probab=98.56  E-value=8.8e-08  Score=86.50  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-----cCCCEEEEEcCCCCChhHHHHHHHHHH----H----hCCCHHHHHHHHH
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-----RNGGVTYVHCTAGLGRAPAVALAYMFW----V----LGYKLNEAHQLLL  134 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-----~~~~~VlVHC~~G~~RS~~v~~ayLm~----~----~~~~~~~A~~~v~  134 (283)
                      .++|.+.|.....|   ++++....+     ...++|+|||.+|+||||+++++.++.    .    ...+..+++..+|
T Consensus       212 ~WPD~gvP~~~~~~---l~~l~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~~~vdv~~~V~~lR  288 (354)
T 4i8n_A          212 TWPDFGVPESPASF---LNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMR  288 (354)
T ss_dssp             SCCTTCCCSCHHHH---HHHHHHHHHTTTTCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHH
T ss_pred             ccccCCccCCHHHH---HHHHHHHHHHhhccCCCCCEEEEeCCCcchHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence            45677666533333   444443322     135799999999999999988775432    1    2478999999999


Q ss_pred             hhCCCC
Q 040474          135 SKRPCF  140 (283)
Q Consensus       135 ~~r~~~  140 (283)
                      ..|+..
T Consensus       289 ~qR~~m  294 (354)
T 4i8n_A          289 KFRMGL  294 (354)
T ss_dssp             TTSTTC
T ss_pred             HhCccc
Confidence            999985

>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane, phosphoprotein, consorti structural, glycoprotein, SGC, PTPRE, membrane genomics; 3.20A {Homo sapiens}

Probab=98.49  E-value=1.5e-07  Score=90.72  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             EeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHH-----HHhCCCHHHHHHHHHhhCCCC
Q 040474           67 AEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMF-----WVLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        67 ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm-----~~~~~~~~~A~~~v~~~r~~~  140 (283)
                      ..++|.+.|.....+...+..+.......+++|+|||.+|+||||++++...+     ....++..+++..+|+.|+..
T Consensus       194 ~~WpD~gvP~~~~~~l~~~~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~v~v~~~v~~lR~qR~~~  272 (599)
T 2jjd_A          194 TSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQM  272 (599)
T ss_dssp             CCCCSSSCCSCSHHHHHHHHHHHHHSCTTCCCEEEECSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTC
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHhhccCCCceEEEEeCCCCcccchhhHHHHHHHHHhccCCcCHHHHHHHHHHhhhcc
Confidence            35677776643333433444433321124689999999999999998875432     334689999999999999985

>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase, RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR; 2.90A {Homo sapiens} PDB: 1ygu_A*

Probab=98.48  E-value=1.9e-07  Score=90.19  Aligned_cols=79  Identities=9%  Similarity=0.041  Sum_probs=52.8

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHH----------HcCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCC
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAI----------NRNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYK  125 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l----------~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~  125 (283)
                      +.++++ .++|.+.|.....|...+..+.+..          ...+++|+|||.+|+||||+++++.++...     .++
T Consensus       494 V~h~~y~~WPd~gvP~~~~~ll~~i~~v~~~~~~~~~~~~~~~~~~~PivVHCsaGvGRTGtf~ai~~~l~~~~~~~~vd  573 (610)
T 1ygr_A          494 VYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVD  573 (610)
T ss_dssp             EEEEEECSCCSSSCCSCHHHHHHHHHHHHTTSCCCC-------CCCCCEEEEESSSSTTHHHHHHHHHHHHHHHHSSBCC
T ss_pred             EEEeeeCCCCCCCCCCCHHHHHHHHHHHHHHhhhhccccccccCCCCCEEEEeCCCCcchhHHHHHHHHHHHHhhCCccC
Confidence            344444 4677776653333333333333211          023579999999999999999988765332     478


Q ss_pred             HHHHHHHHHhhCCCC
Q 040474          126 LNEAHQLLLSKRPCF  140 (283)
Q Consensus       126 ~~~A~~~v~~~r~~~  140 (283)
                      ..+++..+|..|+..
T Consensus       574 v~~~V~~lR~qR~~~  588 (610)
T 1ygr_A          574 IFQVVKALRKARLGM  588 (610)
T ss_dssp             HHHHHHHHHHHSTTT
T ss_pred             HHHHHHHHHHhCccc
Confidence            999999999999985

>4ge6_A Tyrosine-protein phosphatase non-receptor type 9; hydrolase-hydrolase inhibitor complex; HET: B26; 1.40A {Homo sapiens} PDB: 4ge2_A* 4ge5_A* 2pa5_A*

Probab=98.48  E-value=3.2e-07  Score=81.48  Aligned_cols=45  Identities=18%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|+|||.+|+||||++++...+.     ....+..+++..+|+.|+..
T Consensus       233 ~~PivVHCSaGvGRTGtfiaid~~l~~l~~~~~vdv~~~V~~lR~qR~~m  282 (314)
T 4ge6_A          233 EPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFS  282 (314)
T ss_dssp             SCCEEEECSSSSHHHHHHHHHHHHHHHHHHHSCBCHHHHHHHHTTTSTTC
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccc
Confidence            4689999999999999987765432     23568889999999999875

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=98.47  E-value=6e-07  Score=85.22  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHH----HHhC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMF----WVLG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm----~~~~----~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....+...++.+.....  ...++|+|||.+|+||||+++++.++    ...|    .+..+++..+|+.|
T Consensus       422 ~WPD~gvP~~~~~~l~~~~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~~~vdv~~~v~~lR~qR  501 (525)
T 2shp_A          422 TWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR  501 (525)
T ss_dssp             CCCSSSCCSCHHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSHHHHHHHHHHHHHHHHHHHCTTSEECHHHHHHHHHTTS
T ss_pred             CCCCCCcccChHHHHHHHHHHHHHHhccCCCCCEEEEcCCCCchhHHHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHhC
Confidence            45677666533334444444433221  24689999999999999998887654    2335    68889999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       502 ~~~  504 (525)
T 2shp_A          502 SGM  504 (525)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            985

>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A 2nv5_A

Probab=98.47  E-value=2.6e-07  Score=88.66  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHH
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLL  133 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v  133 (283)
                      +.++++ .++|.+.|.....|.+.+..+.....  ..+++|+|||.+|+||||+++++.++..     ...+..+++..+
T Consensus       463 V~h~~y~~WPD~gvP~~~~~~l~~i~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~v~~l  542 (575)
T 1lar_A          463 IRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTL  542 (575)
T ss_dssp             EEEEEECCSCSSSCCSSCHHHHHHHHHHHHHHHHTTCCSCEEEESSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            334443 36777766544344444444444322  2468999999999999999988876632     256899999999


Q ss_pred             HhhCCCC
Q 040474          134 LSKRPCF  140 (283)
Q Consensus       134 ~~~r~~~  140 (283)
                      |+.|+..
T Consensus       543 R~qR~~~  549 (575)
T 1lar_A          543 RTQRPAM  549 (575)
T ss_dssp             TTTSTTS
T ss_pred             HhhCchh
Confidence            9999985

>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A 2nv5_A

Probab=98.47  E-value=2.8e-07  Score=88.44  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=53.3

Q ss_pred             eEEEEE-eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHh
Q 040474           62 IQHIRA-EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLS  135 (283)
Q Consensus        62 i~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~  135 (283)
                      +.++++ .++|.+.|+....+.+.+..+.......+++|+|||.+|+||||+++++.+|..     ...+..+++..+|+
T Consensus       174 V~h~~y~~WpD~gvP~~~~~~l~~~~~v~~~~~~~~~pivVHCsaGvGRTGtfiaid~~l~~l~~~~~v~i~~~v~~lR~  253 (575)
T 1lar_A          174 LRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRS  253 (575)
T ss_dssp             EEEEEECCSCSSSCCSCSHHHHHHHHHHHHHSCTTCCCEEEESSSSSSHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcccCHHHHHHHHHHHHHhcCCCCCCEEEEecCCCcceeEEEEhHHHHHHHhccCCCCHHHHHHHHHh
Confidence            344444 467877765333333333333322112457999999999999999988776532     35789999999999


Q ss_pred             hCCCC
Q 040474          136 KRPCF  140 (283)
Q Consensus       136 ~r~~~  140 (283)
                      .|+..
T Consensus       254 qR~~~  258 (575)
T 1lar_A          254 QRNYM  258 (575)
T ss_dssp             TSTTS
T ss_pred             hhhcc
Confidence            99985

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=98.44  E-value=3.4e-07  Score=88.23  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=52.4

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHH----HhC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFW----VLG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~----~~~----~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.....+...+..+.....  ...++|+|||.+|+||||+++++.++.    ..|    ++..+++..+|..|
T Consensus       416 ~WPD~gvP~~~~~~l~fl~~v~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~~~~vdv~~~V~~lR~qR  495 (595)
T 3ps5_A          416 SWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQR  495 (595)
T ss_dssp             CCCSSSSCSCSHHHHHHHHHHHHHHHHCTTCCCEEEECSSSSHHHHHHHHHHHHHHHHHHHCSSCEECHHHHHHHHHTTS
T ss_pred             CcccCCccCCHHHHHHHHHHHHHHHhhcCCCCCEEEEcCCCCchHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHhhc
Confidence            46787766543334444444443321  146799999999999999988876542    235    68999999999999


Q ss_pred             CCC-CCh
Q 040474          138 PCF-PKL  143 (283)
Q Consensus       138 ~~~-pn~  143 (283)
                      +.. .+.
T Consensus       496 ~~mVqt~  502 (595)
T 3ps5_A          496 SGMVQTE  502 (595)
T ss_dssp             TTSSCSH
T ss_pred             ccccCCH
Confidence            985 443

>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane, phosphoprotein, consorti structural, glycoprotein, SGC, PTPRE, membrane genomics; 3.20A {Homo sapiens}

Probab=98.44  E-value=3.5e-07  Score=88.16  Aligned_cols=73  Identities=18%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+.+.+..+..... ..+++|+|||.+|+||||+++++.++..+     .++..+++..+|..|+..
T Consensus       489 ~WPD~gvP~~~~~ll~~i~~v~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~vdv~~~V~~lR~qR~~m  567 (599)
T 2jjd_A          489 GWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHM  567 (599)
T ss_dssp             CSCSSSCCSCCHHHHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHhccCCCcEEEEeCCCCchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhCccc
Confidence            56787766543344444444444321 24689999999999999999888765322     368999999999999985

>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase, RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR; 2.90A {Homo sapiens} PDB: 1ygu_A*

Probab=98.38  E-value=2.1e-07  Score=89.92  Aligned_cols=70  Identities=14%  Similarity=0.009  Sum_probs=50.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH---cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN---RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|.....   +++++.....   ..+++|+|||.+|+||||+++++.++..     ..++..+++..+|+.|+.
T Consensus       195 ~WPD~gvP~~~~~---~l~~~~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~v~v~~~v~~lR~qR~~  271 (610)
T 1ygr_A          195 SWPDHGVPEDPHL---LLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCL  271 (610)
T ss_dssp             SCCTTSCCSCHHH---HHHHHHHHTTSCCTTCCCEEEECSSSSHHHHHHHHHHHHHHTHHHHSEECHHHHHHHHHTTSTT
T ss_pred             CCCCCCCCCCHHH---HHHHHHHHHHhhccCCCCeEEEcCCCCCchhhHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhcC
Confidence            5677776653323   3444433211   1367999999999999999988877632     357899999999999998


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       272 ~  272 (610)
T 1ygr_A          272 M  272 (610)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment); PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma, D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}

Probab=98.36  E-value=5.5e-07  Score=87.25  Aligned_cols=71  Identities=15%  Similarity=0.035  Sum_probs=51.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|...  +...+..+.......+++|+|||.+|+||||+++++.++..     ..++..+++..+|..|+..
T Consensus       493 ~WPD~gvP~~~--~~~li~~v~~~~~~~~~PivVHCsaGiGRtGtf~a~~~~l~~l~~~~~vdv~~~v~~lR~qR~~~  568 (627)
T 2nlk_A          493 KWPNPDAPISS--TFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGV  568 (627)
T ss_dssp             SSSCTTSCGGG--HHHHHHHHHHHHTTCCSCEEEEESSSCHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHSTTS
T ss_pred             CCCCCCcCChh--HHHHHHHHHHhhccCCCeEEEEeCCCCchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhh
Confidence            45676666422  33344554444334678999999999999999988875422     2478999999999999985

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.34  E-value=1.5e-06  Score=79.81  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             cceEEEEeeCCCc-------ceEEEe--eccCC--CCccccceeecCCCeEEEEEecCCceE-EEEEEEC----------
Q 040474          159 KELVTFSWKGKNC-------TSVEIS--GIDIG--WGQRMPLTFDKEQGLWILKRELPEGRY-EYKYIVD----------  216 (283)
Q Consensus       159 ~~~v~f~w~~~g~-------~~v~l~--Gsf~~--W~~~~pl~~~~~~~~~~~~~~l~~g~y-~ykf~vd----------  216 (283)
                      ...|+|.|..+.+       +.|.|.  |..+.  +-.+.+|.+..+.+.|+.++.|+++.| .|.|+||          
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~~~m~r~~~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~~~  109 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSAPS  109 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCCC-
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccCccccccCCCCCeEEEEEEECCCcEEEEEEEecCccccccccc
Confidence            4689999999986       788888  32221  113457998667899999999999999 9999999          


Q ss_pred             --------------CEeeecCCcceeecCCCCCcceEEEeccCCC
Q 040474          217 --------------GEWTCNKYELVSSPNKDGHVNNYVQVDDAPS  247 (283)
Q Consensus       217 --------------g~w~~d~~~~~~~~~~~G~~nn~i~v~~~~~  247 (283)
                                    |..+.||.||....+..|...|++++.+.+.
T Consensus       110 ~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~  154 (403)
T 3c8d_A          110 PDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPL  154 (403)
T ss_dssp             -CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCC
T ss_pred             chHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCc
Confidence                          7788999999886555688899999988433

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.30  E-value=3.3e-06  Score=65.21  Aligned_cols=56  Identities=25%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             ceEEEEeeCC--CcceEEEeec---cCCCCc--cccceeec---CCCeEEEEEecCCce-EEEEEEE
Q 040474          160 ELVTFSWKGK--NCTSVEISGI---DIGWGQ--RMPLTFDK---EQGLWILKRELPEGR-YEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~--g~~~v~l~Gs---f~~W~~--~~pl~~~~---~~~~~~~~~~l~~g~-y~ykf~v  215 (283)
                      ..|+|.-...  ..+.|.|+|+   +.+|+.  .++|....   +.+.|.+++.||.|. ++|||++
T Consensus         9 v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            9 SQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             EEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             EEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            4677776653  2389999999   899983  57888862   578999999999984 9999999

>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment); PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma, D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}

Probab=98.28  E-value=6.3e-07  Score=86.84  Aligned_cols=70  Identities=16%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH---cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN---RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~  139 (283)
                      .++|.+.|...   ..+++|+.....   ...++|+|||.+|+||||+++++.++..     ..++..+++..+|+.|+.
T Consensus       200 ~WPD~gvP~~~---~~ll~~i~~~~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l~~l~~~~~v~v~~~v~~lR~qR~~  276 (627)
T 2nlk_A          200 QWPDMGVPEYA---LPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNY  276 (627)
T ss_dssp             CCCSSSSCSCS---HHHHHHHHHHHHTCCSSCCCEEEECSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCcCh---HHHHHHHHHHHhhccCCCceEEEEcCCCCCCccEEEEHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Confidence            56787766533   234555544322   2458999999999999999887765532     347899999999999997


Q ss_pred             C
Q 040474          140 F  140 (283)
Q Consensus       140 ~  140 (283)
                      .
T Consensus       277 ~  277 (627)
T 2nlk_A          277 L  277 (627)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.66  E-value=5.2e-05  Score=56.35  Aligned_cols=57  Identities=30%  Similarity=0.539  Sum_probs=43.6

Q ss_pred             ceEEEEeeCC--CcceEEEeecc---CCCC--ccccceeec---CCCeEEEEEecCCce-EEEEEEEC
Q 040474          160 ELVTFSWKGK--NCTSVEISGID---IGWG--QRMPLTFDK---EQGLWILKRELPEGR-YEYKYIVD  216 (283)
Q Consensus       160 ~~v~f~w~~~--g~~~v~l~Gsf---~~W~--~~~pl~~~~---~~~~~~~~~~l~~g~-y~ykf~vd  216 (283)
                      ..|+|.-...  ..+.|.|+||.   .+|+  ..++|...+   +++.|++++.||+|. ++|||++.
T Consensus         7 v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~   74 (108)
T 1ac0_A            7 VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI   74 (108)
T ss_dssp             CCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred             EEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence            4566766553  23899999975   6898  456888753   357899999999995 99999994

>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A

Probab=97.61  E-value=0.0001  Score=66.20  Aligned_cols=72  Identities=25%  Similarity=0.277  Sum_probs=57.1

Q ss_pred             cCCCchhHhhhHHHHHHHHHHHHHcC--CCEEEEEcCCCCC--h--hHHHHHHHHHHHhCCCHHHHHHHHHhh-CCCCCC
Q 040474           70 RDFDAFDLRMRLPAVISKLYKAINRN--GGVTYVHCTAGLG--R--APAVALAYMFWVLGYKLNEAHQLLLSK-RPCFPK  142 (283)
Q Consensus        70 ~D~~~~~~~~~~~~~~~~i~~~l~~~--~~~VlVHC~~G~~--R--S~~v~~ayLm~~~~~~~~~A~~~v~~~-r~~~pn  142 (283)
                      .|.++.++.. +-..+.+|++.+++.  .++++|||..|..  |  |+++++||+|...|+++++|+..+... ||..|.
T Consensus        49 ~dfgp~~~~~-~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~r~naa~L~~~y~~~~~~~~~~~a~~~~~~~~~~~~~f  127 (348)
T 1ohe_A           49 ADFGPLNLAM-VYRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETSYIPF  127 (348)
T ss_dssp             SCCCCCCHHH-HHHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTTTTCCCCCB
T ss_pred             hhcCCccHHH-HHHHHHHHHHHHhChhhcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCcccc
Confidence            6888888774 445678888888642  4689999999985  3  778999999999999999999988876 443344

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.22  E-value=0.0011  Score=63.93  Aligned_cols=69  Identities=28%  Similarity=0.496  Sum_probs=56.3

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEE---CCEe--eecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV---DGEW--TCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v---dg~w--~~d~~~~~~~  229 (283)
                      ..++|+.-.+.+++|.|+|+|++|+ ..+||.+...+|.|.+.++ +.+|.+ |+|.|   ||.+  ..||......
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEECCTTCSSEE
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEecCccceeec
Confidence            4688988888889999999999997 5689987445799999997 788874 88888   6775  6788877664

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=96.98  E-value=0.0023  Score=62.73  Aligned_cols=69  Identities=25%  Similarity=0.428  Sum_probs=56.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEE---CCEe--eecCCcceee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV---DGEW--TCNKYELVSS  229 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v---dg~w--~~d~~~~~~~  229 (283)
                      ..+.|..-.+.++.|.|+|+|++|+ ...||.+....|.|.+.++ +.+|. .|||.|   ||++  ..||.+....
T Consensus       136 ~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~~  211 (722)
T 3k1d_A          136 SGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGTE  211 (722)
T ss_dssp             EEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSBC
T ss_pred             ceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceeec
Confidence            4578988888899999999999998 5689988655799999997 88885 577777   5665  6788888764

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=96.86  E-value=0.0032  Score=62.09  Aligned_cols=71  Identities=14%  Similarity=0.323  Sum_probs=55.0

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-------cCCceEEEEEEEC---CEe--eecCCcc
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-------LPEGRYEYKYIVD---GEW--TCNKYEL  226 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-------l~~g~y~ykf~vd---g~w--~~d~~~~  226 (283)
                      ..+.|..-.+.++.|.|+|+|++|+ ..+||.+. ..|.|.+.++       +++|.+ |||.|+   |.|  ..||...
T Consensus        65 ~gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           65 GATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD-KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             TEEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC-TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             CeEEEEEECCCCCEEEEEEecCCCCCceeeceeC-CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            5789988888889999999999997 56899875 5789999998       678864 888886   455  3477666


Q ss_pred             eeecCC
Q 040474          227 VSSPNK  232 (283)
Q Consensus       227 ~~~~~~  232 (283)
                      ....+.
T Consensus       143 ~~~~~~  148 (755)
T 3aml_A          143 YATFDA  148 (755)
T ss_dssp             CEEECC
T ss_pred             eEeecc
Confidence            554443

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.37  E-value=0.038  Score=53.03  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCccee
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVS  228 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~  228 (283)
                      .++|+.-.+.++.|.|++.    ...++|.+. .+|.|.+.+++.+|.+ |+|.|||..+.||.+...
T Consensus        35 ~~~f~vwap~a~~v~l~~~----~~~~~m~~~-~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~   96 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN----GTEHVMTSL-GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   96 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET----TEEEECEEE-ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             eEEEEEECCCCCEEEEEEc----CCEEeCeeC-CCcEEEEEEECCCCcE-EEEEECCeEecCCCcccc
Confidence            7899888888899999994    247899986 4789999999888886 999999976789887765

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.21  E-value=0.037  Score=52.60  Aligned_cols=64  Identities=17%  Similarity=0.227  Sum_probs=53.4

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-eeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-WTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-w~~d~~~~~~  228 (283)
                      ..+.|+.-.+.++.|.|++.++   ..+||.+. .+|.|.+.++ +.+|. .|+|.|||. ...||.....
T Consensus         9 ~~~~f~vwap~a~~v~l~~~~~---~~~~m~~~-~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~   74 (558)
T 3vgf_A            9 NEVIFTLWAPYQKSVKLKVLEK---GLYEMERD-EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ   74 (558)
T ss_dssp             TEEEEEEECTTCSCCEEEETTT---EEEECEEC-TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred             CcEEEEEECCCCCEEEEEEecC---ceeecccC-CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence            4688988888889999999887   57999986 4799999997 88885 699999987 7888887643

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.02  E-value=0.12  Score=37.57  Aligned_cols=67  Identities=21%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             ceEEEEeeCCCcceEEEeeccC--CCC--ccccceeecCCCeEEEEEecCCc-eEEEEEEECCE--eeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDI--GWG--QRMPLTFDKEQGLWILKRELPEG-RYEYKYIVDGE--WTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~--~W~--~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~vdg~--w~~d~~~~~~  228 (283)
                      +.+++-++ .+.++|+|...+.  +|.  .-++|.+..-.+.+..+++|+.| .++|+|- ||.  |..++..-..
T Consensus         5 ~~vtiyY~-~g~~~vylHyg~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~Nyt   78 (104)
T 2laa_A            5 NKVTIYYK-KGFNSPYIHYRPAGGSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKNYS   78 (104)
T ss_dssp             CEEEEEEE-CSSSSCEEEEEETTSCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSCEE
T ss_pred             CEEEEEEc-CCCCcEEEEEcCCCCCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCccEE
Confidence            34555555 4569999998874  797  34677765323433699999976 6999995 865  8776554433

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.01  E-value=0.032  Score=54.95  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             EEEEeeCCCcceEEEeeccCCCC-----ccccceeecCCCeEEEEEe-cC------CceEEEEEEECCE
Q 040474          162 VTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDKEQGLWILKRE-LP------EGRYEYKYIVDGE  218 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~~~~~~~~~~~-l~------~g~y~ykf~vdg~  218 (283)
                      +.|..-.+.++.|.|++ |+.|.     ..++|.+. .+|.|.+.++ +.      +|.|.|+|.|+|.
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~   84 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA-GSGVWAVTVPVSSIKAAGITGAVYYGYRAWGP   84 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC-STTEEEEEEEHHHHHHTTCCSCCEEEEEEEBT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccC-CCCEEEEEECCcccccccCCCCEEEEEEEEee
Confidence            88988888889999998 77654     46888875 4689999887 67      8999999999974

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=94.80  E-value=0.061  Score=52.15  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-------------eeecC
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-------------WTCNK  223 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-------------w~~d~  223 (283)
                      ..+.|+.-.+.++.|.|++ |+.+.  ..++|.+. .+|.|.+.++ +.+|.+ |+|.|+|.             ...||
T Consensus        19 ~g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~-~~g~w~~~v~~~~~g~~-Y~y~v~~~~~p~~g~~~~~~~~~~DP   95 (657)
T 2wsk_A           19 QGVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH-SGDIWHGYLPDARPGLR-YGYRVHGPWQPAEGHRFNPAKLLIDP   95 (657)
T ss_dssp             SEEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE-ETTEEEEEEETCCTTCE-EEEEEECCCCGGGTCCCCTTSCBCCT
T ss_pred             CeEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC-CCCEEEEEECCCCCCCE-EEEEEeeeecCccCcccccceEEcCc
Confidence            5689998888889999999 77654  46889865 4789999886 788876 99999983             46677


Q ss_pred             Ccceee
Q 040474          224 YELVSS  229 (283)
Q Consensus       224 ~~~~~~  229 (283)
                      .+....
T Consensus        96 ya~~~~  101 (657)
T 2wsk_A           96 CARQID  101 (657)
T ss_dssp             TCSCEE
T ss_pred             Ccceec
Confidence            766553

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=94.56  E-value=0.082  Score=51.79  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCC-----ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-------------ee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWG-----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-------------WT  220 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~-----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-------------w~  220 (283)
                      ..+.|+.-.+.++.|.|++ |+.+.     ..++|.+. .+|.|.+.++ +.+|.+ |+|.|+|.             ..
T Consensus        29 ~g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~-~~gvw~~~v~~~~~g~~-Y~y~v~g~~~p~~g~~~~~~~~~  105 (718)
T 2vr5_A           29 DGVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK-TGDIWHVFVPGLRPGQL-YAYRVYGPYKPELGLRFNPNKVL  105 (718)
T ss_dssp             TEEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE-SSSEEEEEEETCCTTCE-EEEEEECCEETTTTEECCTTSCB
T ss_pred             CeEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC-CCCEEEEEeCCCCCCCE-EEEEEeeecCcccCcccCCCceE
Confidence            4689998888889999999 65443     36888875 5789999886 789987 99999985             34


Q ss_pred             ecCCcceee
Q 040474          221 CNKYELVSS  229 (283)
Q Consensus       221 ~d~~~~~~~  229 (283)
                      .||.+....
T Consensus       106 ~DPya~~~~  114 (718)
T 2vr5_A          106 IDPYAKAIN  114 (718)
T ss_dssp             CCTTCSCBC
T ss_pred             cCcCccccc
Confidence            677766553

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=93.69  E-value=0.12  Score=52.92  Aligned_cols=70  Identities=21%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             cceEEEEeeCCCcceEEEee-ccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEEC------CE----eeecCCc
Q 040474          159 KELVTFSWKGKNCTSVEISG-IDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD------GE----WTCNKYE  225 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~G-sf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd------g~----w~~d~~~  225 (283)
                      ...+.|..-.+.++.|.|++ .+++|. ..++|.+....|.|.+.+. +.+|.+ |+|.|+      |.    ...||..
T Consensus       303 ~~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa  381 (1083)
T 2fhf_A          303 DSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYA  381 (1083)
T ss_dssp             TTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTC
T ss_pred             CCeEEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCcc
Confidence            35789998888889999999 889997 4688986556789999886 788865 777774      43    4778887


Q ss_pred             ceee
Q 040474          226 LVSS  229 (283)
Q Consensus       226 ~~~~  229 (283)
                      ....
T Consensus       382 ~~~~  385 (1083)
T 2fhf_A          382 HSLS  385 (1083)
T ss_dssp             SCBC
T ss_pred             ceec
Confidence            7664

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=93.46  E-value=0.16  Score=48.46  Aligned_cols=56  Identities=11%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             eEEEEeeCCCcceEEE-eeccCCCC----ccccceeecCC---CeEEEEEecCCceEEEEEEEC
Q 040474          161 LVTFSWKGKNCTSVEI-SGIDIGWG----QRMPLTFDKEQ---GLWILKRELPEGRYEYKYIVD  216 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l-~Gsf~~W~----~~~pl~~~~~~---~~~~~~~~l~~g~y~ykf~vd  216 (283)
                      .++|.-..+.+++|.| .|.|++|+    ..+||.+...+   +.|++.++.....+.|||.|.
T Consensus        24 ~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           24 RVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             EEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            3344433456799999 89999996    36899975433   469999997777789999885

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=93.44  E-value=0.33  Score=46.45  Aligned_cols=55  Identities=31%  Similarity=0.437  Sum_probs=42.4

Q ss_pred             eEEEEeeCCC--cceEEEeecc---CCCC--ccccceeecC---CCeEEEEEecCCce-EEEEEEE
Q 040474          161 LVTFSWKGKN--CTSVEISGID---IGWG--QRMPLTFDKE---QGLWILKRELPEGR-YEYKYIV  215 (283)
Q Consensus       161 ~v~f~w~~~g--~~~v~l~Gsf---~~W~--~~~pl~~~~~---~~~~~~~~~l~~g~-y~ykf~v  215 (283)
                      .|+|.-....  .+.|.|+|+-   .+|+  ..++|...+.   +..|++++.||.|. ++|||+|
T Consensus       498 ~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          498 AVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             EEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             EEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            4677766532  3899999976   4798  4678887532   47899999999984 9999998

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=93.06  E-value=0.19  Score=48.93  Aligned_cols=58  Identities=19%  Similarity=0.412  Sum_probs=44.0

Q ss_pred             cceEEEEeeCC---CcceEEEeeccC---CCC--ccc-cceee--cCCCeEEEEEecCCc-eEEEEEEEC
Q 040474          159 KELVTFSWKGK---NCTSVEISGIDI---GWG--QRM-PLTFD--KEQGLWILKRELPEG-RYEYKYIVD  216 (283)
Q Consensus       159 ~~~v~f~w~~~---g~~~v~l~Gsf~---~W~--~~~-pl~~~--~~~~~~~~~~~l~~g-~y~ykf~vd  216 (283)
                      ...|+|.-...   ..+.+.|+||..   +|+  ..+ +|...  .+...|++++.||.| .++|||++=
T Consensus       583 ~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~~  652 (683)
T 3bmv_A          583 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKK  652 (683)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred             eEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            34678887652   238999999775   898  456 77762  346789999999988 699999983

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=92.83  E-value=0.25  Score=48.38  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=51.5

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEe-cCCceEEEEEEE--CCEe--eecCCccee
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV--DGEW--TCNKYELVS  228 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v--dg~w--~~d~~~~~~  228 (283)
                      ...++|+.-.+.++.|.|++.+++|. ..+||.+. .+|.|.+.++ +.+|. .|+|.|  +|.|  ..||.....
T Consensus       112 ~~~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~-~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~~~  185 (718)
T 2e8y_A          112 ADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL-EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAKAV  185 (718)
T ss_dssp             SSEEEEEEECTTCSEEEEEEECTTSCCEEEECEEC-GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCSSB
T ss_pred             CCcEEEEEECCCCCEEEEEEEcCCCcceEEeCccC-CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCccccc
Confidence            35789988888889999999988886 56899875 4789999887 56663 466665  4774  568877655

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=92.50  E-value=0.25  Score=48.00  Aligned_cols=56  Identities=23%  Similarity=0.430  Sum_probs=42.6

Q ss_pred             ceEEEEeeCC---CcceEEEeeccC---CCCc--cc-cceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGK---NCTSVEISGIDI---GWGQ--RM-PLTFD--KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~---g~~~v~l~Gsf~---~W~~--~~-pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      ..|+|.-...   ..+.+.|+||..   +|+.  .+ +|...  .....|++++.||.| .++|||++
T Consensus       580 v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          580 VSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             EEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             EEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            4677877652   248999999764   8983  45 67762  356789999999988 69999998

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=92.29  E-value=0.27  Score=47.75  Aligned_cols=56  Identities=20%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             ceEEEEeeCC---CcceEEEeeccC---CCC--ccc-cceee--cCCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGK---NCTSVEISGIDI---GWG--QRM-PLTFD--KEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~---g~~~v~l~Gsf~---~W~--~~~-pl~~~--~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      ..|+|.-...   ..+.+.|+||..   +|+  ..+ +|...  .....|++++.||.| .++|||++
T Consensus       587 v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          587 VSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             EEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             EEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            4678877652   248999999764   898  345 67652  346799999999988 69999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=92.17  E-value=0.2  Score=47.82  Aligned_cols=57  Identities=19%  Similarity=0.401  Sum_probs=41.8

Q ss_pred             ceEEEEeeCCCcceEEE-eeccCCCCc------cccceeecCC---CeEEEEEecCCceEEEEEEEC
Q 040474          160 ELVTFSWKGKNCTSVEI-SGIDIGWGQ------RMPLTFDKEQ---GLWILKRELPEGRYEYKYIVD  216 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l-~Gsf~~W~~------~~pl~~~~~~---~~~~~~~~l~~g~y~ykf~vd  216 (283)
                      ..++|+-..+.+++|.| .|.+++|+.      .+||.+...+   +.|++.++.....+.|+|.|.
T Consensus        23 ~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           23 LHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             EEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             EEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            34455444556799999 799998864      6899876433   469999987777788888885

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=92.09  E-value=0.37  Score=45.23  Aligned_cols=57  Identities=25%  Similarity=0.376  Sum_probs=42.4

Q ss_pred             cceEEEEeeCC---CcceEEEeecc---CCCCcc---ccceeecCCCeEEEEEecCCce-EEEEEEE
Q 040474          159 KELVTFSWKGK---NCTSVEISGID---IGWGQR---MPLTFDKEQGLWILKRELPEGR-YEYKYIV  215 (283)
Q Consensus       159 ~~~v~f~w~~~---g~~~v~l~Gsf---~~W~~~---~pl~~~~~~~~~~~~~~l~~g~-y~ykf~v  215 (283)
                      ...|+|.-...   -.++|.|+||-   .+|+..   .+|.....++.|+++++||.|. ++|||++
T Consensus       419 ~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          419 PVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             ccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCCCcEEEEEEE
Confidence            35678886542   23899999976   479843   4676643345999999999885 9999998

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=91.97  E-value=0.32  Score=47.25  Aligned_cols=55  Identities=20%  Similarity=0.411  Sum_probs=42.9

Q ss_pred             ceEEEEeeCC----CcceEEEeecc---CCCCc--------cc-cceeecCCCeEEEEEecCCce-EEEEEEE
Q 040474          160 ELVTFSWKGK----NCTSVEISGID---IGWGQ--------RM-PLTFDKEQGLWILKRELPEGR-YEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~----g~~~v~l~Gsf---~~W~~--------~~-pl~~~~~~~~~~~~~~l~~g~-y~ykf~v  215 (283)
                      ..|+|.-...    -.+++.|+||.   .+|+.        .+ ||... +...|++++.||+|. ++|||++
T Consensus       582 v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~-~~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          582 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAP-NYPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCT-TTTSEEEEEEEETTCEEEEEEEE
T ss_pred             EEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccC-CCCcEEEEEEeCCCCeEEEEEEE
Confidence            4577877653    23899999976   56986        45 77764 567899999999984 9999998

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=91.30  E-value=0.62  Score=44.70  Aligned_cols=65  Identities=14%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEEC-CEeeecCCcceee
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVD-GEWTCNKYELVSS  229 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vd-g~w~~d~~~~~~~  229 (283)
                      ...+.|+.-.+.++.|.|++.   |. .+||.+. ++|.|.+.++ +.+|. .|+|.|+ |..+.||......
T Consensus        41 ~~~~~F~vwap~a~~v~l~~~---~~-~~~m~~~-~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           41 ADVVRFRLWATGQQKVMLRLA---GK-DQEMQAN-GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             TTEEEEEEECTTCSCEEEEET---TE-EEECEEC-STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             CCcEEEEEECCCCCEEEEEEC---CC-cccCeec-CCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            356899988888899999983   43 5899986 4689998885 77886 5888884 6678899877653

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=89.92  E-value=0.38  Score=48.13  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             EEEEeeCCCcceEEEee-ccCCCCc---cccceeecCCCeEEEEEecCCce-----EEEEEEEC--CE--eeecCCccee
Q 040474          162 VTFSWKGKNCTSVEISG-IDIGWGQ---RMPLTFDKEQGLWILKRELPEGR-----YEYKYIVD--GE--WTCNKYELVS  228 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~G-sf~~W~~---~~pl~~~~~~~~~~~~~~l~~g~-----y~ykf~vd--g~--w~~d~~~~~~  228 (283)
                      +.|+.-.+.++.|.|+. .+++|..   .++|.+. .+|.|.+.+.+.||.     +.|+|.|+  |.  ...||.+-..
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~~  224 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN-NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKSL  224 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC-TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSCB
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC-CCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCccceec
Confidence            88998888889999998 6777753   6899885 579999999776662     67777776  33  4678887654

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.20  E-value=0.92  Score=45.65  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCC----ccccceeecCCCeEEEEEe-cCCceEEEEEEE--CCE--eeecCCccee
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIV--DGE--WTCNKYELVS  228 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~v--dg~--w~~d~~~~~~  228 (283)
                      ...+.|+.-.+.++.|.|+. |++|.    ..+||.+. ..|.|.+.++ +.+|. .|+|.|  +|.  ...||.....
T Consensus       324 ~~gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~~  399 (921)
T 2wan_A          324 KDATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS-DNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARAI  399 (921)
T ss_dssp             SSEEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC-GGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSSB
T ss_pred             CCeEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC-CCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCcceee
Confidence            35688988888889999997 88884    56899885 4689999887 56775 366655  665  3568877654

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=89.00  E-value=0.98  Score=44.09  Aligned_cols=66  Identities=18%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             EEEEeeCCCcceEEEee-ccCCCC---ccccceeecCCCeEEEEEec-C-Cc-----eEEEEEEEC--CE--eeecCCcc
Q 040474          162 VTFSWKGKNCTSVEISG-IDIGWG---QRMPLTFDKEQGLWILKREL-P-EG-----RYEYKYIVD--GE--WTCNKYEL  226 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~G-sf~~W~---~~~pl~~~~~~~~~~~~~~l-~-~g-----~y~ykf~vd--g~--w~~d~~~~  226 (283)
                      +.|+.-.+.++.|.|++ .+++|.   ..++|.+. .+|.|.+.++- . +|     -+.|+|.|+  |.  ...||.+.
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya~  104 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG-ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAK  104 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC-GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC-CCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCcee
Confidence            88998888889999999 788886   36889874 57899988863 1 34     266778786  64  46788776


Q ss_pred             ee
Q 040474          227 VS  228 (283)
Q Consensus       227 ~~  228 (283)
                      .+
T Consensus       105 ~~  106 (714)
T 2ya0_A          105 SL  106 (714)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=87.37  E-value=0.74  Score=43.01  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=23.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCChhHHHHHH
Q 040474           85 ISKLYKAINRNGGVTYVHCTAGLGRAPAVALA  116 (283)
Q Consensus        85 ~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~a  116 (283)
                      ...|.+.+..+|..|||||..|-.||+-+++.
T Consensus       318 a~~ia~~v~~~g~sVLVhcsDGwDrT~ql~SL  349 (512)
T 2yf0_A          318 AVFLAKAITVENASVLVHCSDGWDRTSQVCSL  349 (512)
T ss_dssp             HHHHHHHHHTTCCCEEECTTTSSSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeEEEECCCCccccHHHHHH
Confidence            33455555567889999999999999765443

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=87.10  E-value=1  Score=44.68  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             ccceEEEEeeCCCcceEEEeeccCCCCcc--ccceeecCCCeEEEEEe-cCCceEEEEEEECCE----------eeecCC
Q 040474          158 RKELVTFSWKGKNCTSVEISGIDIGWGQR--MPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE----------WTCNKY  224 (283)
Q Consensus       158 ~~~~v~f~w~~~g~~~v~l~Gsf~~W~~~--~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~----------w~~d~~  224 (283)
                      ....++|+.-.+.+++|.|++-++.|...  .++.+. .+|.|.+.++ +.+|. .|+|.|++.          ...||.
T Consensus       134 ~~~g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~-~~g~W~~~~~~~~~g~-~Y~y~v~~~~~~~~~~~~~~~~DPy  211 (884)
T 4aio_A          134 SEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKE-SNGVWSVTGPREWENR-YYLYEVDVYHPTKAQVLKCLAGDPY  211 (884)
T ss_dssp             CSSEEEEEEECTTCSEEEEEEESTTTSCEEEEEECEE-ETTEEEEEEEGGGTTC-EEEEEEEEEETTTTEEEEEEECCTT
T ss_pred             ECCEEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecC-CCCEEEEEECCCCCCC-EEEEEEeCCCCCcccccCccccCCC
Confidence            34679999878888999999965555533  233333 4789999997 66775 488888752          346777


Q ss_pred             ccee
Q 040474          225 ELVS  228 (283)
Q Consensus       225 ~~~~  228 (283)
                      ....
T Consensus       212 a~~~  215 (884)
T 4aio_A          212 ARSL  215 (884)
T ss_dssp             CSEE
T ss_pred             eeee
Confidence            6654

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=86.35  E-value=0.98  Score=43.41  Aligned_cols=59  Identities=8%  Similarity=0.162  Sum_probs=43.2

Q ss_pred             cceEEEEee----CCCcceEEEeeccCCCCcccccee--ec---CCCeEEEEEecCCceEEEEEEECC
Q 040474          159 KELVTFSWK----GKNCTSVEISGIDIGWGQRMPLTF--DK---EQGLWILKRELPEGRYEYKYIVDG  217 (283)
Q Consensus       159 ~~~v~f~w~----~~g~~~v~l~Gsf~~W~~~~pl~~--~~---~~~~~~~~~~l~~g~y~ykf~vdg  217 (283)
                      ...+.|+.-    .+.+++|.|++.+++-...+||.+  ..   ..+.|.+.++.......|+|.|+|
T Consensus        29 ~~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           29 TQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             TCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            356888755    667899999998865224589987  32   247899999866566779999974

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=85.57  E-value=1.2  Score=41.80  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHH
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALA  116 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~a  116 (283)
                      +...|.+.+...+..|||||..|-.||+-++..
T Consensus       329 ~a~~ia~~l~~~~~sVLvhcsdGwDrT~ql~SL  361 (528)
T 1zsq_A          329 GALRIADKVESGKTSVVVHSSDGWDRTAQLTSL  361 (528)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCceEEEECCCCccchHHHHHH
Confidence            344455556555568999999999999775543

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=85.43  E-value=1.2  Score=33.38  Aligned_cols=22  Identities=5%  Similarity=0.024  Sum_probs=15.7

Q ss_pred             CCCEEEEEcCCCCChhHHHHHHHH
Q 040474           95 NGGVTYVHCTAGLGRAPAVALAYM  118 (283)
Q Consensus        95 ~~~~VlVHC~~G~~RS~~v~~ayL  118 (283)
                      ++.+|+|+|..|. ||. .++.+|
T Consensus        73 ~~~~ivv~C~sG~-RS~-~aa~~L   94 (134)
T 1vee_A           73 ENTTLYILDKFDG-NSE-LVAELV   94 (134)
T ss_dssp             GGCEEEEECSSST-THH-HHHHHH
T ss_pred             CCCEEEEEeCCCC-cHH-HHHHHH
Confidence            4578999999995 884 344434

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=84.95  E-value=0.38  Score=45.77  Aligned_cols=55  Identities=20%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             EEEEeeCCCcceEEE-eeccCCCC---ccccceeecCC---CeEEEEEecCCceEEEEEEEC
Q 040474          162 VTFSWKGKNCTSVEI-SGIDIGWG---QRMPLTFDKEQ---GLWILKRELPEGRYEYKYIVD  216 (283)
Q Consensus       162 v~f~w~~~g~~~v~l-~Gsf~~W~---~~~pl~~~~~~---~~~~~~~~l~~g~y~ykf~vd  216 (283)
                      ++|+-..+.+++|.| .|.+++|+   ..+||.+...+   +.|++.++.....+.|||.|.
T Consensus        25 ~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           25 LRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             CCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            334333445699999 79999996   36899875443   459999987766778888774

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=84.16  E-value=0.2  Score=47.10  Aligned_cols=44  Identities=27%  Similarity=0.384  Sum_probs=0.0

Q ss_pred             ceEEEeeccC---CCCc--cccceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          172 TSVEISGIDI---GWGQ--RMPLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       172 ~~v~l~Gsf~---~W~~--~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      +++.|+||..   +|+.  .++|........|++++.||+| .++|||+|
T Consensus       446 ~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          446 DSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------
T ss_pred             CeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            8899999764   6973  5788743346789999999999 59999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=83.85  E-value=0.8  Score=46.10  Aligned_cols=48  Identities=27%  Similarity=0.511  Sum_probs=33.9

Q ss_pred             ceEEEeecc-------CCCCcc---ccceeecCCCeEEEEEecCCceEEEEEEECCEee
Q 040474          172 TSVEISGID-------IGWGQR---MPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWT  220 (283)
Q Consensus       172 ~~v~l~Gsf-------~~W~~~---~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~  220 (283)
                      ..+.+.|++       .+|+..   .-|... .+|.|+.+-.||+|.|+||+-++|.|.
T Consensus       164 ~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~-~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          164 VTAVLVGDLQQALGAANNWSPDDDHTLLKKI-NPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CCEEEEETTSGGGTCSSSSCTTCGGGBCEEE-ETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccchhhhccccccCCCCCCcceeecc-CCcceeeeeccCCcceeEEEeecCccc
Confidence            356667755       457622   233333 368899988999999999999997763

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=83.69  E-value=1.3  Score=36.50  Aligned_cols=48  Identities=13%  Similarity=0.048  Sum_probs=38.4

Q ss_pred             cceEEEeeccCCCC--ccccceeecC-CCeEEEEEecCCceEEEEEEECCEe
Q 040474          171 CTSVEISGIDIGWG--QRMPLTFDKE-QGLWILKRELPEGRYEYKYIVDGEW  219 (283)
Q Consensus       171 ~~~v~l~Gsf~~W~--~~~pl~~~~~-~~~~~~~~~l~~g~y~ykf~vdg~w  219 (283)
                      .++++|+|+.++|.  ...+|..... .+.|...+.|+-|. +|||.-+..|
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~   62 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENE   62 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTC
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCc
Confidence            37899999999985  5578887643 68999999998764 8999987655

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=82.89  E-value=2  Score=41.25  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHH
Q 040474           84 VISKLYKAINRNGGVTYVHCTAGLGRAPAVALA  116 (283)
Q Consensus        84 ~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~a  116 (283)
                      +...|.+.+...+..|||||..|-.||+-++..
T Consensus       401 ~A~~ia~~l~~~~~sVLVhcsDGwDrT~qlsSL  433 (657)
T 1lw3_A          401 GALRIADKVESGKTSVVVHSSDGWDRTAQLTSL  433 (657)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCceEEEECCCCccchHHHHHH
Confidence            334455556555568999999999999775543

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=82.06  E-value=2.5  Score=43.00  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             EEEEeeCCCcceEEEee-ccCCCCc---cccceeecCCCeEEEEEecC--Cc-----eEEEEEEEC--CE--eeecCCcc
Q 040474          162 VTFSWKGKNCTSVEISG-IDIGWGQ---RMPLTFDKEQGLWILKRELP--EG-----RYEYKYIVD--GE--WTCNKYEL  226 (283)
Q Consensus       162 v~f~w~~~g~~~v~l~G-sf~~W~~---~~pl~~~~~~~~~~~~~~l~--~g-----~y~ykf~vd--g~--w~~d~~~~  226 (283)
                      +.|+.-.+.++.|.|++ .+++|.+   .++|.+. .+|.|.+.++-.  +|     -+.|+|.|+  |.  ...||...
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~-~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa~  411 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG-ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAK  411 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC-GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC-CCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccce
Confidence            78998888889999999 7888863   6899874 578999888631  23     256777775  54  46788755


Q ss_pred             e
Q 040474          227 V  227 (283)
Q Consensus       227 ~  227 (283)
                      .
T Consensus       412 ~  412 (1014)
T 2ya1_A          412 S  412 (1014)
T ss_dssp             S
T ss_pred             e
Confidence            4

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=80.89  E-value=1.4  Score=31.60  Aligned_cols=18  Identities=22%  Similarity=0.695  Sum_probs=13.9

Q ss_pred             cCCCEEEEEcCCCCChhHH
Q 040474           94 RNGGVTYVHCTAGLGRAPA  112 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~  112 (283)
                      .++.+|+|+|..|. ||..
T Consensus        54 ~~~~~ivv~C~~G~-rS~~   71 (103)
T 3iwh_A           54 NKNEIYYIVCAGGV-RSAK   71 (103)
T ss_dssp             CTTSEEEEECSSSS-HHHH
T ss_pred             cCCCeEEEECCCCH-HHHH
Confidence            35678999999994 8843

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=80.23  E-value=1.8  Score=32.93  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=16.3

Q ss_pred             CCCEEEEEcCCCCChhHHHHHHHHHHHhCC
Q 040474           95 NGGVTYVHCTAGLGRAPAVALAYMFWVLGY  124 (283)
Q Consensus        95 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~  124 (283)
                      ++.+|+|+|..|. ||. .++.+| ...|+
T Consensus        79 ~~~~ivvyC~~G~-rS~-~aa~~L-~~~G~  105 (148)
T 2fsx_A           79 HERPVIFLCRSGN-RSI-GAAEVA-TEAGI  105 (148)
T ss_dssp             --CCEEEECSSSS-THH-HHHHHH-HHTTC
T ss_pred             CCCEEEEEcCCCh-hHH-HHHHHH-HHcCC
Confidence            4578999999995 874 333333 34443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1vhra_	178	c.45.1.1 (A:) VH1-related dual-specificity phospha	4e-19
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	6e-16
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-13
d1m3ga_	145	c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapien	9e-13
d1mkpa_	144	c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapien	3e-12
d1fpza_	176	c.45.1.1 (A:) Kinase associated phosphatase (kap)	2e-10
d1d5ra2	174	c.45.1.1 (A:14-187) Phoshphoinositide phosphatase	6e-09
d1ohea2	182	c.45.1.1 (A:199-380) Proline directed phosphatase	1e-08
d1i9sa_	194	c.45.1.1 (A:) mRNA capping enzyme, triphosphatase	2e-08
d1xria_	151	c.45.1.1 (A:) Putative phosphatase At1g05000 {Thal	4e-05
d1rxda_	152	c.45.1.1 (A:) Protein tyrosine phosphatase type IV	1e-04

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: VH1-related dual-specificity phosphatase, VHR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 4e-19
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           + P + VG+     +D+ KL+++G+  +    +     +   +    ++       I ++
Sbjct: 26  VTPRIYVGNA-SVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKD-----SGITYL 79

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
             +  D   F+L          + +A+ +  G   VHC  G  R+P + +AY+       
Sbjct: 80  GIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMD 139

Query: 126 LNEAHQLLLSKRPCFP 141
           +  A  ++   R   P
Sbjct: 140 VKSALSIVRQNREIGP 155

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 69.2 bits (169), Expect = 6e-16
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTC 221
             F W G     V +SG    W     L   + Q  ++   +LPEG ++YK+ VDG+WT 
Sbjct: 4   TVFRWTG-GGKEVYLSGSFNNWS---KLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTH 59

Query: 222 NKYELVSSPNKDGHVNNYVQVDD 244
           +        ++ G VNN +QV  
Sbjct: 60  DP-SEPIVTSQLGTVNNIIQVKK 81

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 2e-13
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 162 VTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGL-WILKRELPEGRYEYKYIVDGEWT 220
           V   W+    + V ++G    W + + L  D +    + +K  L  G + +++IVD E  
Sbjct: 6   VEIRWQQ-GGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELR 64

Query: 221 CNKYELVSSPNKDGHVNNYVQV 242
            +   L ++ ++ G+  NY++V
Sbjct: 65  VSD-FLPTATDQMGNFVNYIEV 85

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]} Length = 145

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 9e-13
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +GSC     D+  L+  G+  +  +       + G                ++ 
Sbjct: 7   ILPYLFLGSC-SHSSDLQGLQACGITAVLNVSASCPNHFEG--------------LFRYK 51

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
              + D    ++       I  +    N  G V  VH  AG+ R+  + LAY+      +
Sbjct: 52  SIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRV-LVHSQAGISRSATICLAYLMQSRRVR 110

Query: 126 LNEAHQLLLSKRPC 139
           L+EA   +  +R  
Sbjct: 111 LDEAFDFVKQRRGV 124

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 6   IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           I P L +G   +   ++D L + G+K I  +  +    +                + ++ 
Sbjct: 7   ILPFLYLGCA-KDSTNLDVLEEFGIKYILNVTPNLPNLFENAG------------EFKYK 53

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
           +  I D  + +L    P  IS + +A  +N GV  VH  AG+ R+  V +AY+   L   
Sbjct: 54  QIPISDHWSQNLSQFFPEAISFIDEARGKNCGV-LVHSLAGISRSVTVTVAYLMQKLNLS 112

Query: 126 LNEAHQLLLSKRPC 139
           +N+A+ ++  K+  
Sbjct: 113 MNDAYDIVKMKKSN 126

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 20  EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRM 79
           +D ++L+  G++ IF      +L  + V  +    Y +    I      I D    D   
Sbjct: 38  KDTEELKSCGIQDIFVFCTRGELSKYRVPNLL-DLYQQC--GIITHHHPIADGGTPD-IA 93

Query: 80  RLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL-GYKLNEAHQLLLSKRP 138
               ++ +L   +  N   T +H   GLGR+  VA   + ++       +A   L   R 
Sbjct: 94  SCCEIMEELTTCLK-NYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRG 152

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 6e-09
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 4   NFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFC-LQQDPDLEYFGVDIIAIQEYAKTYDDI 62
            +I P++I        E ++ + +  +  +   L       Y   ++ A + Y     + 
Sbjct: 13  TYIYPNIIAMGFPA--ERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNC 70

Query: 63  QHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVL 122
           +  +    D +   L +  P            +  V  +HC AG GR   +  AY+    
Sbjct: 71  RVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRG 130

Query: 123 GY-KLNEAHQLLLSKRPCFPKL 143
            + K  EA       R    K 
Sbjct: 131 KFLKAQEALDFYGEVRTRDKKG 152

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]} Length = 182

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 24/134 (17%), Positives = 33/134 (24%), Gaps = 17/134 (12%)

Query: 7   RPDLIVGSCLQTPEDV-DKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHI 65
           R  L  G    +PE      +   V TI  L +                   T     H 
Sbjct: 35  RARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMY-----------DAKRFTDAGFDHH 83

Query: 66  RAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYK 125
                D       +     + +         G   VH  AGLGR   +   Y+       
Sbjct: 84  DLFFADGSTPTDAI-----VKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMT 138

Query: 126 LNEAHQLLLSKRPC 139
             E    +   RP 
Sbjct: 139 AAETIAWVRICRPG 152

>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 194

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: mRNA capping enzyme, triphosphatase domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 62  IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRN-GGVTYVHCTAGLGRAPAVALAYMFW 120
           I++I+ + +              I    +   R+   +  VHCT G  R   +  A++  
Sbjct: 80  IKYIKLQCKGHGECPTTENTETFIRLCERFNERSPPELIGVHCTHGFNRTGFLICAFLVE 139

Query: 121 VLGYKLNEAHQLLLSKRPC 139
            + + +  A       RP 
Sbjct: 140 KMDWSIEAAVATFAQARPP 158

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 12/130 (9%)

Query: 4   NF--IRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDD 61
           NF  +   +          +   L+ +G+++I  L  +P  E     + +        + 
Sbjct: 7   NFSMVDNGIFRSGFP-DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKS--------NG 57

Query: 62  IQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV 121
           I+  +  I       + +    +   L   ++       +HC  G  R   +       +
Sbjct: 58  IRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLR-KL 116

Query: 122 LGYKLNEAHQ 131
             + L     
Sbjct: 117 QKWCLTSIFD 126

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Protein tyrosine phosphatase type IVa
species: Human (Homo sapiens), pr-1 [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 17  QTPED-VDKLRQIGVKTIF-CLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDA 74
            T    +++L++ GV TI    +   D                  + I  +     D   
Sbjct: 20  ATLNKFIEELKKYGVTTIVRVCEATYDTTLV------------EKEGIHVLDWPFDDGAP 67

Query: 75  FDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLL 134
              ++    +     K     G    VHC AGLGRAP +    +    G K  +A Q + 
Sbjct: 68  PSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIR 126

Query: 135 SKRPC 139
            KR  
Sbjct: 127 QKRRG 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1vhra_	178	VH1-related dual-specificity phosphatase, VHR {Hum	99.98
d1mkpa_	144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	99.98
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	99.97
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.93
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	99.91
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	99.9
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	99.84
d1rxda_	152	Protein tyrosine phosphatase type IVa {Human (Homo	99.84
d1i9sa_	194	mRNA capping enzyme, triphosphatase domain {Mouse	99.79
d1d5ra2	174	Phoshphoinositide phosphatase Pten (Pten tumor sup	99.78
d2pt0a1	313	Myo-inositol hexaphosphate phosphohydrolase (phyta	98.99
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	98.97
d1g4us2	243	SptP tyrosine phosphatase, catalytic domain {Salmo	98.61
d1wcha_	308	Tyrosine-protein phosphatase, non-receptor type 13	98.53
d1lara1	317	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	98.46
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.45
d2shpa1	307	Tyrosine phosphatase {Human (Homo sapiens), shp-2	98.41
d1yfoa_	288	Tyrosine phosphatase {Mouse (Mus musculus) [TaxId:	98.4
d1rpma_	278	Tyrosine phosphatase {Human (Homo sapiens), mu [Ta	98.38
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.38
d1jlna_	297	Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl	98.37
d1p15a_	245	Protein-tyrosine phosphatase alpha {Mouse (Mus mus	98.31
d1l8ka_	273	Tyrosine phosphatase {Human (Homo sapiens), T-cell	98.3
d1lara2	249	RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1fpra_	284	Tyrosine phosphatase {Human (Homo sapiens), shp-1	98.23
d2f71a1	297	Tyrosine phosphatase {Human (Homo sapiens), 1B [Ta	98.22
d1lyva_	283	Protein-tyrosine phosphatase YopH, catalytic domai	98.13
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.46
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.18
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.11
d1ohea1	157	Proline directed phosphatase CDC14b2 {Human (Homo	96.89
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	96.85
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	96.8
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	96.67
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	96.1
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	94.4
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	93.14
d1zsqa2	387	Myotubularin-related protein 2, C-terminal domain	89.51
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	84.18
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	84.11

>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: VH1-related dual-specificity phosphatase, VHR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.5e-33  Score=226.88  Aligned_cols=141  Identities=18%  Similarity=0.332  Sum_probs=124.2

Q ss_pred             ccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhH
Q 040474            2 TYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRL   81 (283)
Q Consensus         2 ~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~   81 (283)
                      .+++|+|+||+|+.+ ++.+.+.|+++||++||||+.+.+...+......    + ...++.|+++|+.|.+..++..+|
T Consensus        22 p~~~I~~~LylG~~~-~a~d~~~L~~~gI~~Iin~~~~~~~~~~~~~~~~----~-~~~~i~y~~ipi~D~~~~~i~~~~   95 (178)
T d1vhra_          22 PCNEVTPRIYVGNAS-VAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANF----Y-KDSGITYLGIKANDTQEFNLSAYF   95 (178)
T ss_dssp             SEEEEETTEEEECHH-HHTCHHHHHHHTCCEEEETTBSSSTTSBCCCHHH----H-TTTTCEEEECCCCCSTTCCGGGGH
T ss_pred             CcCEeeCCEEECChh-HhcCHHHHHHcCCEEEEEcCcccccccccccccc----c-ccCCcEEEEEecCCCcchhHHHHH
Confidence            368999999999996 8999999999999999999987765444433221    1 235899999999999988999999


Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHH
Q 040474           82 PAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKS  148 (283)
Q Consensus        82 ~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~  148 (283)
                      ..+++||++++.+++++|||||.+|+|||+++++||||++.||++++|+++|+++||..||.+|+.|
T Consensus        96 ~~~~~fi~~~~~~~~~~VLVHC~~G~sRS~~vv~aYLm~~~~~s~~~A~~~vr~~R~i~pn~~f~~q  162 (178)
T d1vhra_          96 ERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQ  162 (178)
T ss_dssp             HHHHHHHHHHHTSTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HHHHHHhhhhhhcCCceEEEEcCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCCHHHHHH
Confidence            9999999998866777999999999999999999999999999999999999999997799999987

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

Probab=99.98  E-value=2.4e-32  Score=215.99  Aligned_cols=132  Identities=22%  Similarity=0.299  Sum_probs=118.8

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      .++|.|+||+|+.. ++.+.+.|++.||++|||++.+.+....            ...++.|+++|+.|.+..++..+|.
T Consensus         4 P~eI~p~lylG~~~-~a~~~~~l~~~gI~~Iin~~~~~~~~~~------------~~~~~~y~~~~~~D~~~~~i~~~~~   70 (144)
T d1mkpa_           4 PVEILPFLYLGCAK-DSTNLDVLEEFGIKYILNVTPNLPNLFE------------NAGEFKYKQIPISDHWSQNLSQFFP   70 (144)
T ss_dssp             CEEEETTEEEECTT-SCCCHHHHHHTTEEEEEECCSSCCCEEE------------EETTEEEEECCCCCSTTCCSGGGHH
T ss_pred             CCeEECCEEECChh-HhcCHHHHHhCCCcEEEEccccCCcccc------------CCCceEEEEEEEecCCCCCHHHHHH
Confidence            47899999999995 9999999999999999999876532111            1257999999999998888889999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .++++|++++ +.|++|||||.+|+|||+++++||||++.|+++++|+++|+++||.+ ||.+++.|
T Consensus        71 ~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~vv~aYLm~~~~~~~~~A~~~v~~~Rp~i~pn~~f~~q  136 (144)
T d1mkpa_          71 EAISFIDEAR-GKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSNISPNFNFMGQ  136 (144)
T ss_dssp             HHHHHHHHHH-HTTCEEEEECSSCSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCCCCSTTHHH
T ss_pred             HHHHHHHHhh-hccceEEEEecccccchHHHHHHHHHHHhCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            9999999998 56789999999999999999999999999999999999999999997 99999987

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=99.97  E-value=2e-32  Score=216.69  Aligned_cols=130  Identities=20%  Similarity=0.325  Sum_probs=117.1

Q ss_pred             cccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHH
Q 040474            3 YNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLP   82 (283)
Q Consensus         3 ~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~   82 (283)
                      .++|.|+||+|+.. ++.+.+.|+++||++|||++.+.+..              ....+.|+++|+.|.+..++...|.
T Consensus         4 p~eI~p~LylG~~~-~a~~~~~L~~~gI~~Iin~~~~~~~~--------------~~~~~~y~~i~i~D~~~~~i~~~~~   68 (145)
T d1m3ga_           4 PVEILPYLFLGSCS-HSSDLQGLQACGITAVLNVSASCPNH--------------FEGLFRYKSIPVEDNQMVEISAWFQ   68 (145)
T ss_dssp             CEEETTTEEECCST-HHHHHHHHHHHTCSEEEECSSSSSEE--------------ECSSSEEEECCCCCSTTCCCTTSHH
T ss_pred             CeEEECCEEEcChh-hhcCHHHHHHcCCcEEEEecCCCCcC--------------CCCceEEEEEeccCCchhhHHHHHH
Confidence            47899999999995 89999999999999999998765321              1246899999999998888888999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474           83 AVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus        83 ~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      .+++||++++ ++|++|||||.+|+|||+++++||||++.+|++++|+++|+++||.+ ||.+|+.|
T Consensus        69 ~~~~~i~~~~-~~~~~VlVHC~~G~sRS~~v~~aYLm~~~~~~~~~A~~~v~~~Rp~v~pn~~f~~q  134 (145)
T d1m3ga_          69 EAIGFIDWVK-NSGGRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVISPNFSFMGQ  134 (145)
T ss_dssp             HHHHHHHHHH-HTTCCEEECCSSSSSHHHHHHHHHHHHTTCCHHHHHHHHHSCSCCCCSSCSSCCCC
T ss_pred             HHHHHHHHhh-ccCceEEEEcccccccHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            9999999887 56789999999999999999999999999999999999999999987 99988876

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=3.3e-26  Score=164.62  Aligned_cols=84  Identities=23%  Similarity=0.439  Sum_probs=76.0

Q ss_pred             cceEEEEeeCCCcceEEEeeccCCCCccccceeec-CCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcc
Q 040474          159 KELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDK-EQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVN  237 (283)
Q Consensus       159 ~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~-~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~n  237 (283)
                      ..||+|+|...+ ++|+|+|||++|+...+|.+.. .+|.|.+++.|+||+|+|||+|||+|++||++|.+ .|++|+.|
T Consensus         3 ~vpv~f~w~~~g-~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~-~d~~G~~n   80 (87)
T d2qlvb1           3 MVPVEIRWQQGG-SKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTA-TDQMGNFV   80 (87)
T ss_dssp             CEEEEEEECSCC-SCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEE-BCSSCCCE
T ss_pred             EEEEEEEECCCC-eEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCee-ECCCCCEe
Confidence            378999999987 8899999999999888877654 37899999999999999999999999999999976 79999999


Q ss_pred             eEEEecc
Q 040474          238 NYVQVDD  244 (283)
Q Consensus       238 n~i~v~~  244 (283)
                      |+|.|.+
T Consensus        81 nvi~V~~   87 (87)
T d2qlvb1          81 NYIEVRQ   87 (87)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999963

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.93  E-value=7.4e-26  Score=162.49  Aligned_cols=80  Identities=35%  Similarity=0.676  Sum_probs=73.4

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCcceeecCCCCCcceE
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVSSPNKDGHVNNY  239 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~~~~~~G~~nn~  239 (283)
                      +|++|+|...+ ++|+|+|||++|+ +.+|.+.  +|.|++++.|+||.|+|||+|||+|++||++|.+ .|+.|+.||+
T Consensus         2 ~P~~f~w~~~a-~~V~v~Gsfn~W~-~~~~~~~--~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~-~d~~G~~Nnv   76 (87)
T d1z0na1           2 RPTVFRWTGGG-KEVYLSGSFNNWS-KLPMTRS--QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIV-TSQLGTVNNI   76 (87)
T ss_dssp             EEEEEEECSCC-SCEEEEEGGGTTC-CEECEEE--TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEE-ECTTSCEEEE
T ss_pred             CCEEEEEcCCC-EEEEEEEEeCCCC-ccccccC--CCcEEEEEECCCceEEEEEEECCEEEeCCCCCee-ECCCCCEEEE
Confidence            79999999865 9999999999998 4677764  6899999999999999999999999999999987 6999999999


Q ss_pred             EEecc
Q 040474          240 VQVDD  244 (283)
Q Consensus       240 i~v~~  244 (283)
                      |.|.+
T Consensus        77 i~V~~   81 (87)
T d1z0na1          77 IQVKK   81 (87)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99976

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=177.88  Aligned_cols=134  Identities=20%  Similarity=0.171  Sum_probs=102.4

Q ss_pred             ccccccCCeEE-cCCCCCc-------------ccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEE
Q 040474            2 TYNFIRPDLIV-GSCLQTP-------------EDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRA   67 (283)
Q Consensus         2 ~~~~I~~~l~l-G~~p~~~-------------~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~i   67 (283)
                      |++||+|+.++ ++.|...             ..++.|+++||++||||+++..      +...+     ...|+.|+++
T Consensus        17 D~~wI~P~~~ia~s~P~~~~~~~~~~~~~~~~~~l~~l~~~gi~~Ii~l~~~~~------~~~~~-----~~~gi~~~~~   85 (182)
T d1ohea2          17 DLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKNHNVTTIIRLNKRMY------DAKRF-----TDAGFDHHDL   85 (182)
T ss_dssp             CEEEEETTTEEEECCCCSSCBCSTTCCBCCTHHHHHHHHHTTEEEEEECSCCSS------CTHHH-----HTTTCEEEEC
T ss_pred             CcceEccCCeEEEcCCCccccccccccccCHHHHHHHHHhcCCCEEEEecCCCc------Ccccc-----ccCCcEEEec
Confidence            68999998555 4555211             2267899999999999986531      12222     1258999999


Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC---CChh
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF---PKLD  144 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~---pn~~  144 (283)
                      |++|...|..    ..+.++|+.+. +.+++|+|||.+|+||||++++||||+..||++.+|+++||++||..   |+.+
T Consensus        86 p~~D~~~P~~----~~i~~~i~~~~-~~~~~V~VHC~~G~gRsgt~~a~yL~~~~~~~~~~Al~~vr~~Rp~~i~~~qq~  160 (182)
T d1ohea2          86 FFADGSTPTD----AIVKEFLDICE-NAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQ  160 (182)
T ss_dssp             CCCTTCCCCH----HHHHHHHHHHH-SCSSEEEEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCTHHHH
T ss_pred             CCCCCCCcCH----HHHHHHHHHHH-cCCCcEEEEeCCCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCccCHHHH
Confidence            9999887763    34566776664 67889999999999999999999999999999999999999999963   5556


Q ss_pred             HHHHhHH
Q 040474          145 AIKSATA  151 (283)
Q Consensus       145 ~~~~~~~  151 (283)
                      ++..-+.
T Consensus       161 fl~~~~~  167 (182)
T d1ohea2         161 FLVMKQT  167 (182)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554333

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-24  Score=172.78  Aligned_cols=146  Identities=18%  Similarity=0.202  Sum_probs=113.9

Q ss_pred             ccCCeEEcCCCCC---------cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchh
Q 040474            6 IRPDLIVGSCLQT---------PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFD   76 (283)
Q Consensus         6 I~~~l~lG~~p~~---------~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~   76 (283)
                      +.+.|-++++|..         .++++.|++.||++|+||+++.|...++.+.  +.+.+.. .++.|+++|++|...++
T Consensus        15 ~~~~lgl~~~Pg~~~~~~~r~~~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~--~~~~~~~-~gi~~~~~p~~D~~~p~   91 (176)
T d1fpza_          15 CSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPN--LLDLYQQ-CGIITHHHPIADGGTPD   91 (176)
T ss_dssp             CCCEEEEESCTTCEETTEECCHHHHHHHHHHHTCCEEEECCCHHHHHHTTCTT--HHHHHHH-TTCEEEECCCCTTCCCC
T ss_pred             CccceEEecCCCCCCcccccCHHHHHHHHHhCCCCEEEEeCChhhhhhcCCCc--HHHHHHH-cCCEEEeCCccCCCchh
Confidence            3555777787632         3567889999999999999988776666541  2222223 58999999999998887


Q ss_pred             HhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-hCCCHHHHHHHHHhhCC-CCCChhHHHHhHHhhh
Q 040474           77 LRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRP-CFPKLDAIKSATADIL  154 (283)
Q Consensus        77 ~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~v~~~r~-~~pn~~~~~~~~~~~~  154 (283)
                      .. .+.+++++|.+.+ +++++|+|||++|+||||++++||||+. .++++++|+++|+++|+ ..+    ....|++++
T Consensus        92 ~~-~~~~~~~~i~~~l-~~~~~V~VHC~~G~gRtg~v~~~~Li~~~~~~~~~~Ai~~vr~~R~~~~i----~t~~Q~~~l  165 (176)
T d1fpza_          92 IA-SCCEIMEELTTCL-KNYRKTLIHSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI----QTIKQYNYL  165 (176)
T ss_dssp             HH-HHHHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHCTTSS----CSHHHHHHH
T ss_pred             hH-HHHHHHHHHHHHH-HcCCeEEEEecCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCC----CCHHHHHHH
Confidence            54 5788999999998 4578899999999999999999999975 58999999999999984 331    134677778


Q ss_pred             hccccc
Q 040474          155 TGLRKE  160 (283)
Q Consensus       155 ~~~~~~  160 (283)
                      ..|..+
T Consensus       166 ~~f~~~  171 (176)
T d1fpza_         166 HEFRDK  171 (176)
T ss_dssp             TTHHHH
T ss_pred             HHHHHH
Confidence            776554

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=4.6e-21  Score=151.71  Aligned_cols=127  Identities=12%  Similarity=0.186  Sum_probs=97.7

Q ss_pred             CccccccCCeEEcCCCCCcccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhh
Q 040474            1 MTYNFIRPDLIVGSCLQTPEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMR   80 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~   80 (283)
                      +||++|.++||.|++| ++.+++.|+++||++||||+.+.+..       ...+.+.. .++.++++|+.|...+.....
T Consensus         6 ~nF~~V~~~lyRs~~~-t~~~~~~L~~lgIktIidLr~~~e~~-------~~~~~~~~-~gi~~~~ip~~~~~~~~~~~~   76 (151)
T d1xria_           6 LNFSMVDNGIFRSGFP-DSANFSFLQTLGLRSIIYLCPEPYPE-------SNLQFLKS-NGIRLFQFGIEGNKEPFVNIP   76 (151)
T ss_dssp             TTCEEEETTEEEESCC-CHHHHHHHHHHTCSEEEECCSSCCCH-------HHHHHHHH-HTCEEEECCCCCCCGGGCCCC
T ss_pred             cccceecCCceecCCC-CHHHHHHHHHCCCCEEEECCCcchhh-------cccchhhh-cCceEeecCcccccccccccc
Confidence            5899999999999997 99999999999999999999876542       22222222 589999999998776543322


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhC
Q 040474           81 LPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKR  137 (283)
Q Consensus        81 ~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r  137 (283)
                      -..+..++.......+++|||||.+|++|||+++++||+ ..||+.+++++-.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~pvlvHC~~GkdRTG~v~a~~l~-~~g~~~~~i~~dy~~~~  132 (151)
T d1xria_          77 DHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRK-LQKWCLTSIFDEYQRFA  132 (151)
T ss_dssp             HHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHH-HTTBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHH-HcCCCHHHHHHHHHHhc
Confidence            333333333344445788999999999999999999986 79999999998766544

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Protein tyrosine phosphatase type IVa
species: Human (Homo sapiens), pr-1 [TaxId: 9606]

Probab=99.84  E-value=2.1e-20  Score=147.99  Aligned_cols=134  Identities=22%  Similarity=0.243  Sum_probs=96.5

Q ss_pred             CCeEEcCCCCCccc----HHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHH
Q 040474            8 PDLIVGSCLQTPED----VDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPA   83 (283)
Q Consensus         8 ~~l~lG~~p~~~~~----~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~   83 (283)
                      ....+...| ....    ++.|++.||++||+|+++...      ...+..     .++.++++|++|...++.. .+..
T Consensus         9 ~rfI~tq~P-~~~t~~~f~~~l~~~~i~~Iv~l~e~~y~------~~~~~~-----~~i~~~~~~~~d~~~p~~~-~~~~   75 (152)
T d1rxda_           9 MRFLITHNP-TNATLNKFIEELKKYGVTTIVRVCEATYD------TTLVEK-----EGIHVLDWPFDDGAPPSNQ-IVDD   75 (152)
T ss_dssp             EEEEECCCC-CGGGHHHHHHHHHHTTEEEEEECSCCCSC------CHHHHH-----TTCEEEECCC--CCCCCHH-HHHH
T ss_pred             ceEEEECCC-CchhHHHHHHHHHHhCCeEEeecccccCC------chheee-----cceEEEEeeCCCCCCCCHH-HHHH
Confidence            334455555 4333    456889999999999876522      122222     5899999999998877643 4455


Q ss_pred             HHHHHHHHHH-cCCCEEEEEcCCCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCCChhHHHHhHHhhhhccccc
Q 040474           84 VISKLYKAIN-RNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCFPKLDAIKSATADILTGLRKE  160 (283)
Q Consensus        84 ~~~~i~~~l~-~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~pn~~~~~~~~~~~~~~~~~~  160 (283)
                      .++++...++ .++++|+|||.+|+||||+++++|||. .|+++++|++.+|++||...     ...|+.++..|.++
T Consensus        76 ~~~~~~~~~~~~~~~~v~VHC~~G~gRsg~~~a~~l~~-~~~~~~~av~~vr~~R~~~i-----~~~Q~~fl~~y~~~  147 (152)
T d1rxda_          76 WLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAVQFIRQKRRGAF-----NSKQLLYLEKYRPK  147 (152)
T ss_dssp             HHHHHHHHHHHSTTCEEEEECSSSSTTHHHHHHHHHHH-TTCCHHHHHHHHHTTCTTCC-----CHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHH-hCcCHHHHHHHHHHhCCCCC-----chHHHHHHHHHHHH
Confidence            5666655543 357899999999999999999999984 79999999999999999752     23467778777654

>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: mRNA capping enzyme, triphosphatase domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.5e-19  Score=148.66  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=85.5

Q ss_pred             HhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcC
Q 040474           26 RQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCT  104 (283)
Q Consensus        26 ~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~  104 (283)
                      +..++..|+||+.+..  .  .+...+     ...|+.|+++|+.|.........+...+++++..++. .+++|+|||.
T Consensus        53 ~~~~~~~vinlt~~~~--~--Y~~~~~-----~~~gi~~~~~~~~~~~~~P~~~~~~~f~~~v~~~~~~~~~~~V~VHC~  123 (194)
T d1i9sa_          53 LKVKMSLLVDLTNTSR--F--YDRNDI-----EKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERSPPELIGVHCT  123 (194)
T ss_dssp             TTCCEEEEEECSSCSS--S--SCTHHH-----HTTTCEEEECCCCCTTCCCCHHHHHHHHHHHTTC-----CCEEEEECS
T ss_pred             hCCCceEEEEccCCCC--C--cCHHHH-----HhcCceEEEecCCCCCCCCChHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            4578999999986542  1  122222     2368999999998754322233455556666655432 4689999999


Q ss_pred             CCCChhHHHHHHHHHHHhCCCHHHHHHHHHhhCCCC-CChhHHHH
Q 040474          105 AGLGRAPAVALAYMFWVLGYKLNEAHQLLLSKRPCF-PKLDAIKS  148 (283)
Q Consensus       105 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r~~~-pn~~~~~~  148 (283)
                      +|+||||++++||||++.|+++++|+++++++||.. ++.+++++
T Consensus       124 ~G~~Rsg~~i~ayL~~~~~~s~~~Ai~~~~~~Rp~~i~~~~~~~~  168 (194)
T d1i9sa_         124 HGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKE  168 (194)
T ss_dssp             SSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999985 99888876

>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.8e-19  Score=141.91  Aligned_cols=140  Identities=16%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             CccccccCCeEEcCCCCCcc------cH----HHHH--hcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEe
Q 040474            1 MTYNFIRPDLIVGSCLQTPE------DV----DKLR--QIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAE   68 (283)
Q Consensus         1 m~~~~I~~~l~lG~~p~~~~------~~----~~L~--~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ip   68 (283)
                      |++++|+|+|+++++|....      ++    ..|.  ..+.-.++|++.....   ..          ..-+..++++|
T Consensus        10 lDlt~It~riiv~~~P~~~~e~~~~~~i~~v~~~l~~~~~~~~~v~nl~~~~~y---~~----------~~~~~~~~~~~   76 (174)
T d1d5ra2          10 LDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHY---DT----------AKFNCRVAQYP   76 (174)
T ss_dssp             BSEEEEETTEEEECCCBSSCCTTCCCBHHHHHHHHHHHSSSCEEEEEEESSCCC---CT----------TSCSSCEEEEE
T ss_pred             cceeEEeCCEEEEeCCCCCcHHhhcCCHHHHHHHHHhccCCcEEEEecccCCCC---Ch----------HHcCCeEEEeC
Confidence            68899999999999973331      11    1222  3455667777643311   11          11257788999


Q ss_pred             ccCCCchhHhhhHHHHHHHHHHHHHc-CCCEEEEEcCCCCChhHHHHHHHHHHHhC-CCHHHHHHHHHhhCCCCCChhHH
Q 040474           69 IRDFDAFDLRMRLPAVISKLYKAINR-NGGVTYVHCTAGLGRAPAVALAYMFWVLG-YKLNEAHQLLLSKRPCFPKLDAI  146 (283)
Q Consensus        69 i~D~~~~~~~~~~~~~~~~i~~~l~~-~~~~VlVHC~~G~~RS~~v~~ayLm~~~~-~~~~~A~~~v~~~r~~~pn~~~~  146 (283)
                      ++|...|++. .+..+++.++..+.. ++++|+|||.+|+||||++++||||+..+ +++++|+++++.+|+..|.. ..
T Consensus        77 ~~d~~~Ps~~-~i~~~~~~~~~~~~~~~~~~v~VHC~~G~gRSg~~~~ayL~~~~~~~~~~~al~~~~~~R~~~~~~-v~  154 (174)
T d1d5ra2          77 FEDHNPPQLE-LIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKG-VT  154 (174)
T ss_dssp             ECTTSCCCHH-HHHHHHHHHHHHHTTTSCSEEEEECSSSSHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHCSSSCS-SC
T ss_pred             CCCCCCcCHH-HHHHHHHHHHHHhccCCCCEEEEEeCCCcchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCC-CC
Confidence            9999887654 566778887777643 45789999999999999999999998877 59999999999999876422 22


Q ss_pred             HHhHHhhhh
Q 040474          147 KSATADILT  155 (283)
Q Consensus       147 ~~~~~~~~~  155 (283)
                      .+.|..++.
T Consensus       155 ~psQ~ryl~  163 (174)
T d1d5ra2         155 IPSQRRYVY  163 (174)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            334555554

>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
domain: Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
species: Selenomonas ruminantium [TaxId: 971]

Probab=98.99  E-value=5.4e-10  Score=96.65  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             CCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-hCCCHHHHHHHHHhhCC
Q 040474           60 DDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-LGYKLNEAHQLLLSKRP  138 (283)
Q Consensus        60 ~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-~~~~~~~A~~~v~~~r~  138 (283)
                      .++.|+++|++|...|. ...+..++++|.+.  ..+++++|||.+|+|||++++++|+|.+ .+++++||+..-...+.
T Consensus       179 ~g~~Y~ripi~D~~~P~-~~~id~~i~~i~~~--~~~~~ivvhc~~g~~rt~~~~~~~~~~~~~~~~~~d~i~rq~~l~~  255 (313)
T d2pt0a1         179 AGMRYFRIAATDHVWPT-PENIDRFLAFYRTL--PQDAWLHFHCEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGG  255 (313)
T ss_dssp             TTCEEEEEEECTTSCCC-HHHHHHHHHHHHTC--CTTCEEEEECSSSSHHHHHHHHHHHHHHCTTSCHHHHHHHHHHTTS
T ss_pred             hCceEEEecCCCCCCCC-HHHHHHHHHHHHhC--CCCCCEEEECCCCCcHHHHHHHHHHHHHccCCCHHHHHHHHHHhcc
Confidence            58999999999998886 44677777777643  4567999999999999999999997755 57899999987666554


Q ss_pred             C
Q 040474          139 C  139 (283)
Q Consensus       139 ~  139 (283)
                      .
T Consensus       256 ~  256 (313)
T d2pt0a1         256 F  256 (313)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=6.4e-10  Score=94.93  Aligned_cols=117  Identities=19%  Similarity=0.245  Sum_probs=73.4

Q ss_pred             cccCC-eEEcCCCCC--cccHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhH----
Q 040474            5 FIRPD-LIVGSCLQT--PEDVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDL----   77 (283)
Q Consensus         5 ~I~~~-l~lG~~p~~--~~~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~----   77 (283)
                      .|-++ ||.|+.+..  ..+.+.|.++||++||+|+...|....+.+        ....++.++++|+++......    
T Consensus        18 ~vr~g~l~RS~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~~~~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~   89 (272)
T d1ywfa1          18 ALRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSREVARRGPG--------RVPDGIDVHLLPFPDLADDDADDSA   89 (272)
T ss_dssp             TSCTTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSC--------CCCTTCEEEECCCCCSCC-------
T ss_pred             cccCCceEecCCcCcCCHHHHHHHHHCCCcEEEECCCHHHHhhcCCC--------CCCCCceEEEecCcccccccccccc
Confidence            45667 888877533  467889999999999999977653221111        113578899988865321100    


Q ss_pred             ------------------------------hhhHHHHH-------------HHHHHHHHcCCCEEEEEcCCCCChhHHHH
Q 040474           78 ------------------------------RMRLPAVI-------------SKLYKAINRNGGVTYVHCTAGLGRAPAVA  114 (283)
Q Consensus        78 ------------------------------~~~~~~~~-------------~~i~~~l~~~~~~VlVHC~~G~~RS~~v~  114 (283)
                                                    ...+....             ..+...+ ..+++||+||.+|+.|||.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~~~~~-~~~~pvL~HCtaGKDRTG~~a  168 (272)
T d1ywfa1          90 PHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLL-AAGRPVLTHCFAGKDRTGFVV  168 (272)
T ss_dssp             ------------------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH-HTTCCEEEECSSSSSHHHHHH
T ss_pred             hhhHHHHHHhhhccccchhhhhhhhhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHh-ccCCCEEEecCCCCcchHHHH
Confidence                                          00011111             1111222 357899999999999998555


Q ss_pred             HHHHHHHhCCCHHHHHH
Q 040474          115 LAYMFWVLGYKLNEAHQ  131 (283)
Q Consensus       115 ~ayLm~~~~~~~~~A~~  131 (283)
                      +. |+...|.+.++.++
T Consensus       169 al-lL~llGV~~e~I~~  184 (272)
T d1ywfa1         169 AL-VLEAVGLDRDVIVA  184 (272)
T ss_dssp             HH-HHHHTTCCHHHHHH
T ss_pred             HH-HHHHcCCCHHHHHH
Confidence            55 55589999887765

>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: SptP tyrosine phosphatase, catalytic domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.61  E-value=4.4e-08  Score=81.81  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--------cCCCEEEEEcCCCCChhHHHHHHHHHHHh-CCCHHHHHHHHHhhCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--------RNGGVTYVHCTAGLGRAPAVALAYMFWVL-GYKLNEAHQLLLSKRP  138 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--------~~~~~VlVHC~~G~~RS~~v~~ayLm~~~-~~~~~~A~~~v~~~r~  138 (283)
                      .++|.+.++....|...++.+....+        ...++++|||.+|+||||+++++..+... ..+..+++..+|+.|+
T Consensus       142 ~Wpd~~vP~~~~~l~~li~~v~~~~~~~~~~~~~~~~~PivVHCsaGvGRTGtf~a~~~l~~~~~vdv~~iv~~lR~qR~  221 (243)
T d1g4us2         142 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDSRN  221 (243)
T ss_dssp             SCCTTSCCSCHHHHHHHHHHHHC-------------CCCEEEECSSSSSHHHHHHHHHHHHHCTTCCHHHHHHHHHTTSC
T ss_pred             CcCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccCCCCCCEEEEECCCCCcchHHHHHHHHHhcCCCCHHHHHHHHHhcCC
Confidence            55677666544444444444433211        12468999999999999999988776554 4789999999999997


Q ss_pred             C
Q 040474          139 C  139 (283)
Q Consensus       139 ~  139 (283)
                      .
T Consensus       222 ~  222 (243)
T d1g4us2         222 N  222 (243)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1e-07  Score=82.29  Aligned_cols=71  Identities=20%  Similarity=0.293  Sum_probs=48.6

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.-...|...+..+...  .+.++|+|||.+|+||||+++++..+..     ...+..+++..+|..|+..
T Consensus       206 ~Wpd~~vP~~~~~~l~~l~~v~~~--~~~~PivVHCsaGvGRtG~fia~d~~l~~l~~~~~vdv~~~v~~lR~qR~~~  281 (308)
T d1wcha_         206 AWPDHDTPSQPDDLLTFISYMRHI--HRSGPIITHCSAGIGRSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGM  281 (308)
T ss_dssp             SCCTTSCCSCHHHHHHHHHHHHHH--CCSSCEEEECSSSSHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSTTC
T ss_pred             CccccccCCCchhHHHHHHHHHHh--ccCCcEEEEeccccchhHHHHHHHHHHHHHHccCCCCHHHHHHHHHhhCccc
Confidence            345655554333343344443332  3467999999999999999887765432     2468999999999999985

>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.8e-07  Score=81.17  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHH-----HhCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFW-----VLGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~-----~~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.-...|.+.+..+...-....++|+|||.+|+||||+++++..+.     ....+..+++..+|+.|+..
T Consensus       181 ~Wpd~~~P~~~~~~l~~i~~v~~~~~~~~~PivVHCs~GvGRtG~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  258 (317)
T d1lara1         181 AWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYM  258 (317)
T ss_dssp             CSCSSSCCSCSHHHHHHHHHHHHHSCTTCCCEEEESSSSSSHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHTTSTTS
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHhhcCCCCcEEEEecccccceeeeehhHhHHHHHhcCCCCCHHHHHHHHHhhcccc
Confidence            34555554323234334444433322335789999999999999987765332     22478999999999999985

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.45  E-value=2.4e-07  Score=65.93  Aligned_cols=63  Identities=17%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             ceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEecCCceEEEEEEECCEeeecCCccee
Q 040474          160 ELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRELPEGRYEYKYIVDGEWTCNKYELVS  228 (283)
Q Consensus       160 ~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~vdg~w~~d~~~~~~  228 (283)
                      ..++|+.-.+.+++|.|++.+.    ..+|.+. ++|.|.+++.+.+|.+ |+|.|||.|+.||.+-..
T Consensus        21 ~g~~FrvwAP~A~~V~l~~~~~----~~~m~~~-~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~   83 (97)
T d2bhua1          21 AGTRFRLWTSTARTVAVRVNGT----EHVMTSL-GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   83 (97)
T ss_dssp             CCEEEEEECSSCSSEEEEETTE----EEECEEE-ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             CeEEEEEECCCCCEeEEEeeCC----ccCCEEc-cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcC
Confidence            4689998899999999999643    4788887 4789999999999976 999999999999997654

>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo sapiens), shp-2 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-2 [TaxId: 9606]

Probab=98.41  E-value=3e-07  Score=79.30  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHH----HHHhC----CCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYM----FWVLG----YKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayL----m~~~~----~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.-...|...+..+....+  ...++|+|||.+|+||||+++++..    +...+    .+..+++..+|+.|
T Consensus       204 ~Wpd~~vP~~~~~ll~li~~v~~~~~~~~~~~PivVHCs~GvgRtGtfia~~~~l~~l~~~~~~~~vdv~~~V~~lR~qR  283 (307)
T d2shpa1         204 TWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQR  283 (307)
T ss_dssp             CCCSSSCCSCHHHHHHHHHHHHHHHHHSTTCCCEEEECSSSSHHHHHHHHHHHHHHHHHHHCTTSEECHHHHHHHHHTTS
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCEEEEeCCCCcHHHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHhhc
Confidence            35666655433334444444443322  2457899999999999999877643    22334    58889999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       284 ~~~  286 (307)
T d2shpa1         284 SGM  286 (307)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            985

>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.6e-07  Score=80.29  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....|...++.+...-....++|+|||.+|+||||+++++..+..     ...+..+++..+|+.|+..
T Consensus       191 ~Wpd~~~P~~~~~~l~l~~~v~~~~~~~~~PivVHCs~G~gRtG~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  268 (288)
T d1yfoa_         191 SWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQM  268 (288)
T ss_dssp             CCCSSSCCSCSHHHHHHHHHHHHHSCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHSSEECHHHHHHHHTTTSTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhccccCCcEEEEeCCCCcccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Confidence            456666654333344444444433223457999999999999999777664422     2468889999999999885

>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), mu [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), mu [TaxId: 9606]

Probab=98.38  E-value=2e-07  Score=79.20  Aligned_cols=73  Identities=18%  Similarity=0.169  Sum_probs=47.3

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHHcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAINRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|...|.-...+.+.+..+........++|+|||.+|+||||+++++..+..     ...+..+++..+|+.|+..
T Consensus       182 ~Wpd~~~P~~~~~~l~~i~~v~~~~~~~~~PivVHCs~G~gRsG~f~al~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  259 (278)
T d1rpma_         182 GWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNM  259 (278)
T ss_dssp             CSCSSSCCSCSHHHHHHHHHHHHHSCTTSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHSTTS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCCchhhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Confidence            445555443222333333333333222357899999999999999876654322     2358999999999999985

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=9e-07  Score=64.46  Aligned_cols=69  Identities=26%  Similarity=0.420  Sum_probs=55.7

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCC-ccccceeecCCCeEEEEEecCCceEEEEEEE---CCEee--ecCCcceee
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWG-QRMPLTFDKEQGLWILKRELPEGRYEYKYIV---DGEWT--CNKYELVSS  229 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~-~~~pl~~~~~~~~~~~~~~l~~g~y~ykf~v---dg~w~--~d~~~~~~~  229 (283)
                      -++|+.-.+.++.|.|+|+||+|. +..+|.+..+.|.|.+.+.....-..|||.|   ||+|.  .||.+-..+
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~e   95 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQ   95 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhcccc
Confidence            488998888889999999999997 5678876656889999998665556778777   78875  588887665

>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Mouse (Mus musculus), ptp-sl/br7 [TaxId: 10090]

Probab=98.37  E-value=7.1e-07  Score=76.51  Aligned_cols=76  Identities=17%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|.+.|.....+...+..+.....  ...++|+|||.+|+||||+++++..+..     ...+..+++..+|+.|+..
T Consensus       192 ~Wpd~~vP~~~~~~l~~i~~v~~~~~~~~~~~PivVHCsaGvGRtG~fial~~~l~~l~~~~~vdv~~~v~~lR~qR~~~  271 (297)
T d1jlna_         192 SWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGM  271 (297)
T ss_dssp             CSCTTSSCSCSHHHHHHHHHHHHHHHTCTTSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHSTTS
T ss_pred             CcCCCCCCCChHHHHHHHHHHHHHHhcccCCCceEEEecccccchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHhhcccc
Confidence            55666655433334444444443321  2356899999999999999887665432     2468889999999999985


Q ss_pred             -CCh
Q 040474          141 -PKL  143 (283)
Q Consensus       141 -pn~  143 (283)
                       .+.
T Consensus       272 Vqt~  275 (297)
T d1jlna_         272 VQTS  275 (297)
T ss_dssp             SCSH
T ss_pred             cCCH
Confidence             443

>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=2.6e-07  Score=77.04  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHH-HcCCCEEEEEcCCCCChhHHHHHHHHHHH-----hCCCHHHHHHHHHhhCCCC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAI-NRNGGVTYVHCTAGLGRAPAVALAYMFWV-----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|...|.-...|...++.+.... ....++|+|||.+|+||||+++++..+..     ...+..+++..+|+.|+..
T Consensus       147 ~Wpd~~~P~~~~~~l~~~~~v~~~~~~~~~~PivVHCs~G~gRsg~f~a~~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  225 (245)
T d1p15a_         147 GWPEVGIPSDGKGMINIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHM  225 (245)
T ss_dssp             CSCSSSCCSSSCSHHHHHHHHHHHTTTTTSCCEEEESSSSSHHHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHTTSTTS
T ss_pred             CCCccCCCCCHHHHHHHHHHHHhhhccCCCCCEEEEcCCCCccccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcccc
Confidence            3456555433334444555544432 12346899999999999999887654322     2468889999999999984

>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), T-cell [TaxId: 9606]

Probab=98.30  E-value=5.6e-07  Score=76.15  Aligned_cols=45  Identities=24%  Similarity=0.416  Sum_probs=37.0

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHHHh-----CCCHHHHHHHHHhhCCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFWVL-----GYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~~~-----~~~~~~A~~~v~~~r~~~  140 (283)
                      .++|+|||.+|+||||+++++..+..+     ..+..+++..+|+.|+..
T Consensus       205 ~~PivVHCs~GvgRtGtf~al~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  254 (273)
T d1l8ka_         205 HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGL  254 (273)
T ss_dssp             SCCEEEEESSSSSHHHHHHHHHHHHHHSSSSCCCCHHHHHHHHTTTBTTC
T ss_pred             CceEEEEecccccceehHHHHHHHHHHHHhCCCcCHHHHHHHHHHhcccc
Confidence            468999999999999998877654332     468899999999999985

>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: RPTP Lar
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.1e-06  Score=71.50  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=46.7

Q ss_pred             ccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHH-HHH----hCCCHHHHHHHHHhhCCCC
Q 040474           69 IRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYM-FWV----LGYKLNEAHQLLLSKRPCF  140 (283)
Q Consensus        69 i~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayL-m~~----~~~~~~~A~~~v~~~r~~~  140 (283)
                      ++|.+.|.....+.+.+..+.+...  ...++|+|||.+|.||||+++++.. |..    .-.+..+++..+|+.|+..
T Consensus       150 Wpd~~~P~~~~~~~~li~~v~~~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~l~~~~~vdv~~~v~~lR~qR~~~  228 (249)
T d1lara2         150 WPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAM  228 (249)
T ss_dssp             SCSSSCCSSCHHHHHHHHHHHHHHHHTTCCSCEEEESSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHHTTTSTTS
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCCeeehHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcccc
Confidence            5555544322233333444433321  3467999999999999999776653 322    1357889999999999885

>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), shp-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), shp-1 [TaxId: 9606]

Probab=98.23  E-value=5.7e-07  Score=76.61  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             ccCCCchhHhhhHHHHHHHHHHHHHc--CCCEEEEEcCCCCChhHHHHHHHH----HHHhC----CCHHHHHHHHHhhCC
Q 040474           69 IRDFDAFDLRMRLPAVISKLYKAINR--NGGVTYVHCTAGLGRAPAVALAYM----FWVLG----YKLNEAHQLLLSKRP  138 (283)
Q Consensus        69 i~D~~~~~~~~~~~~~~~~i~~~l~~--~~~~VlVHC~~G~~RS~~v~~ayL----m~~~~----~~~~~A~~~v~~~r~  138 (283)
                      ++|.+.|.-...|...+..+......  +.++|+|||.+|+||||+++++..    +...+    ++..+++..+|+.|+
T Consensus       175 Wpd~~~P~~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRtG~fial~~~~~~l~~~~~~~~vdv~~~v~~lR~qR~  254 (284)
T d1fpra_         175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRS  254 (284)
T ss_dssp             SCTTSCCSCSHHHHHHHHHHHHHHTTSTTCCCEEEESSBSSHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHTTST
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCccchHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHhhCc
Confidence            45555443233344445554444321  236899999999999999887653    22333    689999999999999


Q ss_pred             CC
Q 040474          139 CF  140 (283)
Q Consensus       139 ~~  140 (283)
                      ..
T Consensus       255 ~~  256 (284)
T d1fpra_         255 GM  256 (284)
T ss_dssp             TS
T ss_pred             cc
Confidence            85

>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo sapiens), 1B [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Human (Homo sapiens), 1B [TaxId: 9606]

Probab=98.22  E-value=1.1e-06  Score=75.14  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=46.1

Q ss_pred             eccCCCchhHhhhHHHHHHHHHHHHH--cCCCEEEEEcCCCCChhHHHHHHHH----HHHh----CCCHHHHHHHHHhhC
Q 040474           68 EIRDFDAFDLRMRLPAVISKLYKAIN--RNGGVTYVHCTAGLGRAPAVALAYM----FWVL----GYKLNEAHQLLLSKR  137 (283)
Q Consensus        68 pi~D~~~~~~~~~~~~~~~~i~~~l~--~~~~~VlVHC~~G~~RS~~v~~ayL----m~~~----~~~~~~A~~~v~~~r  137 (283)
                      .++|.+.|.-...+...+..+.....  ...++|+|||.+|+||||+++++..    |...    .++..+++..+|+.|
T Consensus       177 ~Wpd~~vP~~~~~~l~l~~~v~~~~~~~~~~~PivVHCs~G~gRtGtf~ald~~~~~l~~~~~~~~vdV~~~v~~lR~qR  256 (297)
T d2f71a1         177 TWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFR  256 (297)
T ss_dssp             CCCTTCCCSCHHHHHHHHHHHHHTTTTCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHTTTS
T ss_pred             CcccCCCCCCHHHHHHHHHHHHHhhccCCCCceEEEeeccccCceehhHHHHHHHHHHHhhcCCCccCHHHHHHHHHhhc
Confidence            34555555423233333333333211  1246899999999999999887642    3222    257889999999999


Q ss_pred             CCC
Q 040474          138 PCF  140 (283)
Q Consensus       138 ~~~  140 (283)
                      +..
T Consensus       257 ~~~  259 (297)
T d2f71a1         257 MGL  259 (297)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            985

>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Higher-molecular-weight phosphotyrosine protein phosphatases
domain: Protein-tyrosine phosphatase YopH, catalytic domain
species: Yersinia enterocolitica [TaxId: 630]

Probab=98.13  E-value=2e-06  Score=73.08  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCCCChhHHHHHHHHHH---HhCCCHHHHHHHHHhhCCC
Q 040474           96 GGVTYVHCTAGLGRAPAVALAYMFW---VLGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        96 ~~~VlVHC~~G~~RS~~v~~ayLm~---~~~~~~~~A~~~v~~~r~~  139 (283)
                      .++|+|||.+|+||||+++++.++.   ....+..+++..+|+.|+.
T Consensus       211 ~~PivVHCs~GvGRtGtfia~~~~~~~~~~~vdv~~~v~~lR~qR~~  257 (283)
T d1lyva_         211 KLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNG  257 (283)
T ss_dssp             SSCCEEECSSSSSHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHTCT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcCCC
Confidence            4689999999999999987765432   2246899999999999953

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.46  E-value=3.2e-05  Score=53.81  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             ccceEEEEeeCCCcceEEEeeccCCCCccccceeecCCCeEEEEEe-cCCceEEEEEEECCE-eeecCCccee
Q 040474          158 RKELVTFSWKGKNCTSVEISGIDIGWGQRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE-WTCNKYELVS  228 (283)
Q Consensus       158 ~~~~v~f~w~~~g~~~v~l~Gsf~~W~~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~-w~~d~~~~~~  228 (283)
                      ....++|+.-.+.++.|.|++...+   .++|.+. ++|.|.+.+. +.+| +.|+|.|||. .+.||.....
T Consensus         7 ~~~gv~FrvwAP~A~~V~l~~~~~~---~~~m~~~-~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~   74 (90)
T d1eh9a1           7 DGNEVIFTLWAPYQKSVKLKVLEKG---LYEMERD-EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQ   74 (90)
T ss_dssp             SSSCEECCEECTTCSCCBCCCSSSC---CCCCCCC-TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSCC
T ss_pred             eCCCEEEEEECCCCCEEEEEeecCC---cccceeC-CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcC
Confidence            3456899999999999999987544   4688875 5899999995 7888 6699999865 5778877544

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.18  E-value=0.00054  Score=48.72  Aligned_cols=56  Identities=20%  Similarity=0.401  Sum_probs=42.7

Q ss_pred             ceEEEEeeC----CCcceEEEeecc---CCCC--ccccceeecC---CCeEEEEEecCCce-EEEEEEEC
Q 040474          160 ELVTFSWKG----KNCTSVEISGID---IGWG--QRMPLTFDKE---QGLWILKRELPEGR-YEYKYIVD  216 (283)
Q Consensus       160 ~~v~f~w~~----~g~~~v~l~Gsf---~~W~--~~~pl~~~~~---~~~~~~~~~l~~g~-y~ykf~vd  216 (283)
                      ..|+|.-..    .| +.|.|+|+.   .+|+  ..++|.....   .+.|++++.||+|. ++|||++.
T Consensus         6 v~V~F~v~~~~t~~G-q~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~~   74 (105)
T d3bmva2           6 ICVRFVVNNASTVYG-ENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIKK   74 (105)
T ss_dssp             EEEEEEEESCCCCTT-CEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred             EEEEEEEcccccCCC-CEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEEE
Confidence            567887653    34 899999985   4896  5577776432   35799999999995 99999874

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.11  E-value=0.00073  Score=48.24  Aligned_cols=56  Identities=30%  Similarity=0.579  Sum_probs=41.5

Q ss_pred             ceEEEEeeCCC--cceEEEeecc---CCCC--ccccceeec---CCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGKN--CTSVEISGID---IGWG--QRMPLTFDK---EQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~g--~~~v~l~Gsf---~~W~--~~~pl~~~~---~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      ..|+|.-...-  .+.|+|+||.   .+|+  ..++|...+   .++.|..++.||+| .++|||++
T Consensus         7 v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           7 VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             CCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             EEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            45667655431  3899999985   5897  456776542   25679999999998 59999998

>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0017  Score=49.16  Aligned_cols=69  Identities=26%  Similarity=0.283  Sum_probs=54.0

Q ss_pred             cCCCchhHhhhHHHHHHHHHHHHHcC--CCEEEEEcCCCCCh----hHHHHHHHHHHHhCCCHHHHHHHHHhhCCC
Q 040474           70 RDFDAFDLRMRLPAVISKLYKAINRN--GGVTYVHCTAGLGR----APAVALAYMFWVLGYKLNEAHQLLLSKRPC  139 (283)
Q Consensus        70 ~D~~~~~~~~~~~~~~~~i~~~l~~~--~~~VlVHC~~G~~R----S~~v~~ayLm~~~~~~~~~A~~~v~~~r~~  139 (283)
                      .|.++.++.. +-..+..+.+.+++.  .++.+|||.+.-.+    ++.+++||+|...+|++++|++.+.+..|.
T Consensus        46 ~DFGPLNL~~-lyrfc~~l~~~L~~~~~~~k~Iv~yts~d~~kraNAa~Lig~Y~Vi~l~~sp~~a~~~l~~~~p~  120 (157)
T d1ohea1          46 ADFGPLNLAM-VYRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFLVGCYMVIYLGRTPEEAYRILIFGETS  120 (157)
T ss_dssp             SCCCCCCHHH-HHHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTTTTCC
T ss_pred             cccCCchHHH-HHHHHHHHHHHHcChhhcCCeEEEECCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Confidence            6899888774 444566678887542  35678999876655    677999999999999999999999887654

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.0018  Score=45.95  Aligned_cols=56  Identities=23%  Similarity=0.448  Sum_probs=42.8

Q ss_pred             cceEEEEeeC----CCcceEEEeecc---CCCC--ccccceeecC---CCeEEEEEecCCc-eEEEEEEE
Q 040474          159 KELVTFSWKG----KNCTSVEISGID---IGWG--QRMPLTFDKE---QGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       159 ~~~v~f~w~~----~g~~~v~l~Gsf---~~W~--~~~pl~~~~~---~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      ..+|+|.-..    .| +.+.|+||.   .+|+  ..++|.....   ...|.+++.+|.| .++|||++
T Consensus         5 ~v~V~F~v~~~~t~~G-q~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           5 QVSVRFVVNNATTNLG-QNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             EEEEEEEEESCCCCSS-CEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             EEEEEEEEcceEcCCC-CEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            3567888643    34 899999985   6897  4578876532   3568999999999 69999998

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=96.80  E-value=0.0019  Score=46.12  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=41.1

Q ss_pred             ceEEEEeeCCC----cceEEEeecc---CCCC--ccccceeec------CCCeEEEEEecCCc-eEEEEEEE
Q 040474          160 ELVTFSWKGKN----CTSVEISGID---IGWG--QRMPLTFDK------EQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       160 ~~v~f~w~~~g----~~~v~l~Gsf---~~W~--~~~pl~~~~------~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      ..|+|+.+...    .+.|+|+|+.   .+|+  ..++|....      ..+.|++++.||+| .++|||++
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            46778776532    3899999986   4797  345666542      23579999999998 59999987

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=96.67  E-value=0.0018  Score=45.32  Aligned_cols=46  Identities=24%  Similarity=0.443  Sum_probs=34.8

Q ss_pred             CCcceEEEeeccC---CCCcc--c-cceeecCCCeEEEEEecCCc-eEEEEEEE
Q 040474          169 KNCTSVEISGIDI---GWGQR--M-PLTFDKEQGLWILKRELPEG-RYEYKYIV  215 (283)
Q Consensus       169 ~g~~~v~l~Gsf~---~W~~~--~-pl~~~~~~~~~~~~~~l~~g-~y~ykf~v  215 (283)
                      .| +.|.|+|+..   +|+..  . .+......+.|.+.+.||+| .++|||++
T Consensus        16 ~G-q~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1          16 IG-DTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             TT-CEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             CC-CEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            44 9999999865   89732  2 23333345689999999999 59999998

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.10  E-value=0.0074  Score=43.21  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=48.0

Q ss_pred             cccceEEEEeeCCCcceEEEeeccCCCC--ccccceeecCCCeEEEEEe-cCCceEEEEEEECCE----------eeecC
Q 040474          157 LRKELVTFSWKGKNCTSVEISGIDIGWG--QRMPLTFDKEQGLWILKRE-LPEGRYEYKYIVDGE----------WTCNK  223 (283)
Q Consensus       157 ~~~~~v~f~w~~~g~~~v~l~Gsf~~W~--~~~pl~~~~~~~~~~~~~~-l~~g~y~ykf~vdg~----------w~~d~  223 (283)
                      +....+.|+.-.+.+++|.|+-...++.  ...+|.....+|.|.+.++ +.+|.+ |+|.|+|.          ...||
T Consensus        14 ~~~~g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~-Y~y~v~~~~~~~~~~~~~~~~DP   92 (115)
T d2fhfa1          14 LTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDP   92 (115)
T ss_dssp             EETTEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCT
T ss_pred             EeCCcEEEEEECCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCE-EEEEEEcccccccCCcceEecce
Confidence            3456789999999999999975333332  2234555455789999996 778875 77777653          24566


Q ss_pred             Cccee
Q 040474          224 YELVS  228 (283)
Q Consensus       224 ~~~~~  228 (283)
                      .....
T Consensus        93 YA~a~   97 (115)
T d2fhfa1          93 YAHSL   97 (115)
T ss_dssp             TCSCB
T ss_pred             eeEEE
Confidence            66644

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=94.40  E-value=0.18  Score=37.14  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             ccceEEEEeeCCC-------cceEEEeeccCCCC----ccccceeecCCCeEEEEEecCCc-eEEEEEEE-C--------
Q 040474          158 RKELVTFSWKGKN-------CTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRELPEG-RYEYKYIV-D--------  216 (283)
Q Consensus       158 ~~~~v~f~w~~~g-------~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~l~~g-~y~ykf~v-d--------  216 (283)
                      .+..|+|-|....       .+.|+|.++-....    .+-.|.+..+..+|..++.||.. +-.|+|+. .        
T Consensus        21 ~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~gTDVW~~s~~vpad~rgsY~fip~~~~~~~~~~  100 (145)
T d3c8da1          21 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSAP  100 (145)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCCC
T ss_pred             CCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCCCCeEEEEEEECcccEEEEEEEecCcccCCCcC
Confidence            4578999998743       35688877543322    23468888778899999999987 79999984 1        


Q ss_pred             -CE-------e-------eecCCcceeecCCCCCcceEEEecc
Q 040474          217 -GE-------W-------TCNKYELVSSPNKDGHVNNYVQVDD  244 (283)
Q Consensus       217 -g~-------w-------~~d~~~~~~~~~~~G~~nn~i~v~~  244 (283)
                       +.       |       +.||-||....+.-|+-.++++..+
T Consensus       101 ~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~lp~  143 (145)
T d3c8da1         101 SPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQ  143 (145)
T ss_dssp             --CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTT
T ss_pred             CccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccccCC
Confidence             11       1       5799999777778888888888755

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=93.14  E-value=0.1  Score=39.20  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=43.3

Q ss_pred             eEEEEeeCCCcceEEEeeccCCCC----ccccceeecCCCeEEEEEe--------cCCceEEEEEEECCEe
Q 040474          161 LVTFSWKGKNCTSVEISGIDIGWG----QRMPLTFDKEQGLWILKRE--------LPEGRYEYKYIVDGEW  219 (283)
Q Consensus       161 ~v~f~w~~~g~~~v~l~Gsf~~W~----~~~pl~~~~~~~~~~~~~~--------l~~g~y~ykf~vdg~w  219 (283)
                      -++|..-.+.+++|.|+--..++.    ..++|.+. .+|.|.+.++        +.+|.+ |.|.|||.|
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~-~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPA-GSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEEC-STTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccc-cccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            468988888889999998665554    34677764 5789999985        677754 788899865

>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Myotubularin-like phosphatases
domain: Myotubularin-related protein 2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.28  Score=42.05  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCChhHHHHHHH
Q 040474           86 SKLYKAINRNGGVTYVHCTAGLGRAPAVALAY  117 (283)
Q Consensus        86 ~~i~~~l~~~~~~VlVHC~~G~~RS~~v~~ay  117 (283)
                      ..|.+.+...+..|||||..|-.||+.++..-
T Consensus       202 ~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~  233 (387)
T d1zsqa2         202 LRIADKVESGKTSVVVHSSDGWDRTAQLTSLA  233 (387)
T ss_dssp             HHHHHHHHTTCCCEEEECSSSSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEEeCCCCCchhHHHHHHH
Confidence            44455554555689999999999997655443

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.3  Score=34.08  Aligned_cols=18  Identities=22%  Similarity=0.372  Sum_probs=13.6

Q ss_pred             cCCCEEEEEcCCCCChhHH
Q 040474           94 RNGGVTYVHCTAGLGRAPA  112 (283)
Q Consensus        94 ~~~~~VlVHC~~G~~RS~~  112 (283)
                      ....+|+++|..|+ ||+.
T Consensus        80 ~~~~~ii~yC~sG~-~A~~   97 (120)
T d1urha2          80 SYDKPIIVSCGSGV-TAAV   97 (120)
T ss_dssp             CSSSCEEEECCSSS-THHH
T ss_pred             CccCceEEEccchh-HHHH
Confidence            34578999999997 6643

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.11  E-value=0.17  Score=35.64  Aligned_cols=79  Identities=11%  Similarity=0.082  Sum_probs=38.5

Q ss_pred             cHHHHHhcCCcEEEEcCcCCCCCccCCChHHHHHHhhhCCCeEEEEEeccCCCchhHhhhHHHHHHHHHHHHHcCCCEEE
Q 040474           21 DVDKLRQIGVKTIFCLQQDPDLEYFGVDIIAIQEYAKTYDDIQHIRAEIRDFDAFDLRMRLPAVISKLYKAINRNGGVTY  100 (283)
Q Consensus        21 ~~~~L~~~gI~~Vv~l~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~l~~~~~~Vl  100 (283)
                      ....|.+.|. .+|+++.+.+....            ..+|-  +++|+.+....... ........+...+ .++.+|+
T Consensus        14 ~a~~l~~~g~-~liDvR~~~e~~~g------------hi~ga--~~ip~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~iv   76 (119)
T d1tq1a_          14 VAHDLLLAGH-RYLDVRTPEEFSQG------------HACGA--INVPYMNRGASGMS-KNTDFLEQVSSHF-GQSDNII   76 (119)
T ss_dssp             HHHHHHHHTC-CEEEESCHHHHHHC------------CBTTB--EECCSCCCSTTTCC-CTTTHHHHHTTTC-CTTSSEE
T ss_pred             HHHHHHHCcC-EEEECCCHHHHHcC------------CCCCc--cchhhccccccccc-ccHHHHHHHHHhc-CCCcEEE
Confidence            3445556676 48899875532111            11232  45566543221111 1111122222222 3467899


Q ss_pred             EEcCCCCChhHHHHHHHH
Q 040474          101 VHCTAGLGRAPAVALAYM  118 (283)
Q Consensus       101 VHC~~G~~RS~~v~~ayL  118 (283)
                      |+|..|. ||.. ++.+|
T Consensus        77 ~~C~~G~-rs~~-a~~~L   92 (119)
T d1tq1a_          77 VGCQSGG-RSIK-ATTDL   92 (119)
T ss_dssp             EEESSCS-HHHH-HHHHH
T ss_pred             EEcCCcC-cHHH-HHHHH
Confidence            9999995 8743 34434