Citrus Sinensis ID: 040492

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARAES
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEccHHHHcccccccccccccccccccccccccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
maekggplpkfgewdvndpasaeGFTVIFNKARnekktggkpdspvkddsqfkhgavlgkpqskkwFCCMQAARAES
Flexible Loop (DISEMBL)
maekggplpkfgewdvndpaSAEGFTVIFNKArnekktggkpdspvkddSQFKhgavlgkpqskkWFCCMQAARAES
Low Complexity Region (SEG)
MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARAES
Disordered region (IsUnstruct)
***********************GFTVIF**********************************KKWFCCM*******
Disordered Region (DISOPRED)
*****GP**KFGEWDVNDPASAEGFTVIFN*************************************C**QAA****
Disordered Region (DISEMBL)
MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNE*************DSQFKHGAVLGKPQSKKWFCCMQAARAES
Disordered Region (DISPRO)
*******LPKFGEWDVNDPASAEGFTVIFNKAR****************************QSKKWFCCMQA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKWFCCMQAARAES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q8GYN5	211	RPM1-interacting protein	no	no	0.831	0.303	0.382	4e-06

>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 3   EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQ 62
           EK   +PKFG+WD N+P+SA+G+T IFNK R E+ +G      V   S+         P 
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGAN----VSGSSRTPTHQSSRNPN 198

Query: 63  SKKWFCCM 70
           +    CC 
Sbjct: 199 NTSSCCCF 206

Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
359485775	77	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.818	3e-30
224129214	78	predicted protein [Populus trichocarpa]	0.987	0.974	0.820	1e-28
255582868	77	NOI, putative [Ricinus communis] gi|2235	0.987	0.987	0.831	2e-28
449475642	77	PREDICTED: uncharacterized LOC101217194	0.974	0.974	0.805	5e-28
359494187	77	PREDICTED: RPM1-interacting protein 4-li	1.0	1.0	0.701	5e-25
224056477	76	predicted protein [Populus trichocarpa]	0.974	0.986	0.736	7e-23
356566419	79	PREDICTED: RPM1-interacting protein 4 [G	1.0	0.974	0.721	9e-23
356527157	79	PREDICTED: RPM1-interacting protein 4 [G	1.0	0.974	0.721	1e-22
388519587	79	unknown [Medicago truncatula]	1.0	0.974	0.708	1e-22
323669574	79	putative nitrate-induced NOI protein [Vi	1.0	0.974	0.721	2e-22

>gi|359485775|ref|XP_002267619.2| PREDICTED: uncharacterized protein LOC100254625 [Vitis vinifera] gi|296085047|emb|CBI28462.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 70/77 (90%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGK 60
          M+EKG PLPKFG+WDVNDP SA+GFT+IFNKAR+EKKTGGKPDSP K+DS FKHGA LGK
Sbjct: 1  MSEKGQPLPKFGDWDVNDPTSADGFTMIFNKARDEKKTGGKPDSPAKEDSAFKHGADLGK 60

Query: 61 PQSKKWFCCMQAARAES 77
          PQSKKWFCCMQ+  AES
Sbjct: 61 PQSKKWFCCMQSTYAES 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129214|ref|XP_002320529.1| predicted protein [Populus trichocarpa] gi|222861302|gb|EEE98844.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 67/78 (85%), Gaps = 2/78 (2%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGA--VL 58
          MAEK  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSP KD S +K GA   L
Sbjct: 1  MAEKDQPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPAKDSSTYKPGATTTL 60

Query: 59 GKPQSKKWFCCMQAARAE 76
          GKPQ+KKWFCC+QA  AE
Sbjct: 61 GKPQTKKWFCCIQATHAE 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582868|ref|XP_002532206.1| NOI, putative [Ricinus communis] gi|223528102|gb|EEF30175.1| NOI, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 69/77 (89%), Gaps = 1/77 (1%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHG-AVLG 59
          MA+KG PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSP KD+S +K G   LG
Sbjct: 1  MADKGRPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPAKDNSGYKPGTTTLG 60

Query: 60 KPQSKKWFCCMQAARAE 76
          KPQSKKWFCC+Q+A AE
Sbjct: 61 KPQSKKWFCCIQSAPAE 77

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475642|ref|XP_004154510.1| PREDICTED: uncharacterized LOC101217194 [Cucumis sativus]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 68/77 (88%), Gaps = 2/77 (2%)

Query: 1  MAEKGG--PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL 58
          MAEKG   PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG PDSP KD++ FK+G+VL
Sbjct: 1  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDETAFKNGSVL 60

Query: 59 GKPQSKKWFCCMQAARA 75
          GK Q KKWFCC+QAA +
Sbjct: 61 GKSQPKKWFCCLQAAES 77

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494187|ref|XP_003634735.1| PREDICTED: RPM1-interacting protein 4-like [Vitis vinifera] gi|296089934|emb|CBI39753.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 64/77 (83%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGK 60
          M++ G PLPKFGEWDVNDPASAEGFTVIFNKAR+EK+TGG+P+SP   ++  K G    K
Sbjct: 1  MSDNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKRTGGQPESPANVENNVKQGVEPSK 60

Query: 61 PQSKKWFCCMQAARAES 77
          PQ+KKWFCC+QA RAES
Sbjct: 61 PQTKKWFCCLQAPRAES 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056477|ref|XP_002298875.1| predicted protein [Populus trichocarpa] gi|222846133|gb|EEE83680.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 3  EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK-DDSQFKHGAVLGKP 61
          + G PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP+SP K DDS  K G    KP
Sbjct: 1  DTGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKVDDSHVKSGVNPAKP 60

Query: 62 QSKKWFCCMQAARAES 77
          Q KKWFCC+Q+  A+S
Sbjct: 61 QPKKWFCCIQSPPADS 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566419|ref|XP_003551429.1| PREDICTED: RPM1-interacting protein 4 [Glycine max]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 60/79 (75%), Gaps = 2/79 (2%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK--DDSQFKHGAVL 58
          M+EKG PLPKFGEWDVNDP SAEGFTVIFNKAR+EKKTGG PDSP K   D   K     
Sbjct: 1  MSEKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGNPDSPGKTATDPHSKPAVEP 60

Query: 59 GKPQSKKWFCCMQAARAES 77
          GK Q+KKWFCCMQ   AES
Sbjct: 61 GKTQTKKWFCCMQNPSAES 79

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527157|ref|XP_003532179.1| PREDICTED: RPM1-interacting protein 4 [Glycine max] gi|255626713|gb|ACU13701.1| unknown [Glycine max]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 61/79 (77%), Gaps = 2/79 (2%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK--DDSQFKHGAVL 58
          M+EKG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P+SP K   D   K     
Sbjct: 1  MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATDPHSKPAVEP 60

Query: 59 GKPQSKKWFCCMQAARAES 77
          GK Q+KKWFCCMQ   AES
Sbjct: 61 GKTQTKKWFCCMQNPSAES 79

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519587|gb|AFK47855.1| unknown [Medicago truncatula]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 61/79 (77%), Gaps = 2/79 (2%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVL-- 58
          M++ G PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG P+SP K  ++      L  
Sbjct: 1  MSDNGRPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGNPESPGKTATEPHSKPALDP 60

Query: 59 GKPQSKKWFCCMQAARAES 77
           KPQSKKWFCCMQ   AES
Sbjct: 61 AKPQSKKWFCCMQNPPAES 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323669574|dbj|BAJ78239.1| putative nitrate-induced NOI protein [Vicia faba]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 63/79 (79%), Gaps = 2/79 (2%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVK--DDSQFKHGAVL 58
          M+EKG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG  +SP K   + Q K  +  
Sbjct: 1  MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNTESPGKTATEPQSKPASDP 60

Query: 59 GKPQSKKWFCCMQAARAES 77
          GKPQSKKWFCC+Q   AES
Sbjct: 61 GKPQSKKWFCCIQNPPAES 79

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
TAIR|locus:2058284	73	AT2G04410 "AT2G04410" [Arabido	0.922	0.972	0.753	1.4e-25
TAIR|locus:2176620	130	NOI "AT5G55850" [Arabidopsis t	0.922	0.546	0.643	1.1e-18
TAIR|locus:2162002	80	AT5G63270 "AT5G63270" [Arabido	0.857	0.825	0.562	1.8e-14
TAIR|locus:2827881	69	AT2G17660 "AT2G17660" [Arabido	0.792	0.884	0.590	3e-14
TAIR|locus:4010713927	68	AT4G35655 "AT4G35655" [Arabido	0.727	0.823	0.645	4.9e-14
TAIR|locus:505006667	73	AT5G40645 "AT5G40645" [Arabido	0.740	0.780	0.584	2.1e-13
TAIR|locus:2101185	89	AT3G48450 "AT3G48450" [Arabido	0.415	0.359	0.812	1.4e-12
TAIR|locus:2090250	211	RIN4 "RPM1 interacting protein	0.480	0.175	0.567	1.5e-07
TAIR|locus:1009023455	99	AT5G19473 "AT5G19473" [Arabido	0.402	0.313	0.451	0.00073

TAIR|locus:2058284 AT2G04410 "AT2G04410" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)

Query:     1 MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQF-KHGAVLG 59
             MA+KG PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GGK DSP KD+  + K+G VL 
Sbjct:     1 MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLE 60

Query:    60 KPQSKKWFCCMQA 72
             KP +KKWFCC++A
Sbjct:    61 KP-AKKWFCCIRA 72

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2176620 NOI "AT5G55850" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/73 (64%), Positives = 52/73 (71%)

Query:     3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKD-DSQFKHGAV-LGK 60
             +KG PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP K  +   K G     K
Sbjct:    19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query:    61 PQSKKWFCCMQAA 73
             PQ  K    + A+
Sbjct:    79 PQPVKKMALLHAS 91

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2162002 AT5G63270 "AT5G63270" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 45/80 (56%), Positives = 52/80 (65%)

Query:     1 MAE-KGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT----GGKPDSPVK------DD 49
             MAE KG PLPKFGEWDVN+PASAEGFTVIF+KA +EKKT    G  P+S V        D
Sbjct:     1 MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSD 60

Query:    50 SQFKHGAVLGKPQSK-KWFC 68
                 H +    P++K KWFC
Sbjct:    61 QNNNHSSQ--NPKAKNKWFC 78

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2827881 AT2G17660 "AT2G17660" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/66 (59%), Positives = 44/66 (66%)

Query:     3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQ 62
             E G  LPKFGEWDVNDPA+A+GFTVIF+KA  +KKTG    S  K +SQ K      KP 
Sbjct:     5 EAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTGR---SSTKTNSQRKQDG--DKPA 59

Query:    63 SKKWFC 68
              KKW C
Sbjct:    60 VKKWLC 65

GO:0003674 "molecular_function" evidence=ND

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:4010713927 AT4G35655 "AT4G35655" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/62 (64%), Positives = 44/62 (70%)

Query:     7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPVKDDSQFKHGAVLGKPQSKKW 66
             PLPKFGEWDVNDPA+AEGFTVIF+KA  +KKTG    S  K  SQ K   V  KP +KKW
Sbjct:     9 PLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTGR---SSSKAPSQRKQDGV--KP-TKKW 62

Query:    67 FC 68
              C
Sbjct:    63 LC 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006667 AT5G40645 "AT5G40645" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:     7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG--GKPDSPVKDDSQFKHGAVLGKPQSK 64
             PLPKFGEWDVNDPASAEGFTVIF KAR++KKT   G+  S  +D+++ +      +P +K
Sbjct:    14 PLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQD-----EP-TK 67

Query:    65 KWFCC 69
             K FCC
Sbjct:    68 KRFCC 72

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2101185 AT3G48450 "AT3G48450" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query:     7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKKT 38
             PLPKFGEWD  +P SAEGFTVIFNKAR++KKT
Sbjct:     9 PLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2090250 RIN4 "RPM1 interacting protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 21/37 (56%), Positives = 29/37 (78%)

Query:     3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 39
             EK   +PKFG+WD N+P+SA+G+T IFNK R E+ +G
Sbjct:   143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

GO:0005634 "nucleus" evidence=ISM

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA;IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0034051 "negative regulation of plant-type hypersensitive response" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:1009023455 AT5G19473 "AT5G19473" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query:     7 PLPKFGEWDVNDPASAEGFTVIFNKARNEKK 37
             P+P+FG WD   P  A  ++V+F+KAR  +K
Sbjct:    12 PVPQFGGWDQKGPNDATNYSVVFSKARANRK 42


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        77   0.00091  102 3  11 23  0.46    29
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.26u 0.07s 9.33t   Elapsed:  00:00:03
  Total cpu time:  9.26u 0.07s 9.33t   Elapsed:  00:00:03
  Start:  Fri May 10 22:01:14 2013   End:  Fri May 10 22:01:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029075001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (149 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	77
pfam05627	39	pfam05627, AvrRpt-cleavage, Cleavage site for path	4e-15

>gnl|CDD|203293 pfam05627, AvrRpt-cleavage, Cleavage site for pathogenic type III effector avirulence factor Avr

 Score = 61.9 bits (150), Expect = 4e-15
 Identities = 29/39 (74%), Positives = 32/39 (82%)

Query: 1  MAEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 39
              G  +PKFGEWD N+PASAEGFTVIFNKAR+EKKTG
Sbjct: 1  TQVAGSAVPKFGEWDENNPASAEGFTVIFNKARDEKKTG 39

This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.85

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.85  E-value=1e-22  Score=117.71  Aligned_cols=38  Identities=74%  Similarity=1.243  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHhhhhcC
Q 040492            2 AEKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG   39 (77)
Q Consensus         2 ~~~~~~vPKFG~WD~~~pas~~~yTviF~kar~~Kk~~   39 (77)
                      .+++++|||||+||++||+++++|||||+|||++|+++
T Consensus         2 ~~~~~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    2 PQKGSHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ----------SGGGTT-TT---SS-EEEE---------
T ss_pred             CcCCCCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            35778999999999999999999999999999999975

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	77
2nud_C	35	The Structure Of The Type Iii Effector Avrb Complex		3e-06

>pdb|2NUD|C Chain C, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide Length = 35

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 3  EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEK 36
          EK   +PKFG+WD N+P+SA+G+T IFNK R E+
Sbjct: 2  EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	4e-13

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV} Length = 35

 Score = 56.6 bits (136), Expect = 4e-13
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 3  EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEK 36
          EK   +PKFG+WD N+P+SA+G+T IFNK R E+
Sbjct: 2  EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	99.84

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=99.84  E-value=1.1e-22  Score=114.60  Aligned_cols=34  Identities=59%  Similarity=1.084  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCceehhHHHHhhh
Q 040492            3 EKGGPLPKFGEWDVNDPASAEGFTVIFNKARNEK   36 (77)
Q Consensus         3 ~~~~~vPKFG~WD~~~pas~~~yTviF~kar~~K   36 (77)
                      +++++|||||+||++||+++++|||||+|||++|
T Consensus         2 ~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            2 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             -------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            5788999999999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00