Citrus Sinensis ID: 040503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.942 | 0.955 | 0.405 | 1e-151 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.960 | 0.950 | 0.393 | 1e-139 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.870 | 0.913 | 0.377 | 1e-128 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.878 | 0.899 | 0.387 | 1e-127 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.504 | 0.480 | 0.292 | 9e-27 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.684 | 0.267 | 0.252 | 4e-17 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.684 | 0.276 | 0.256 | 6e-17 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.684 | 0.276 | 0.255 | 8e-16 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.677 | 0.273 | 0.241 | 8e-14 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.461 | 0.298 | 0.267 | 6e-12 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/767 (40%), Positives = 457/767 (59%), Gaps = 44/767 (5%)
Query: 7 YFLLLLFSLLSFLQTPTSAAKK-PYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGS 65
+FLLL L F +S++ + Y+V++ + P+S D+ H + S L S
Sbjct: 11 FFLLLC---LGFCHVSSSSSDQGTYIVHM---AKSQMPSSFDL------HSNWYDSSLRS 58
Query: 66 VEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLE 125
+ ++ + + ++Y I+GF L +E A L PGV+SV P+ +LHTTR+ FLGL+
Sbjct: 59 ISDS-AELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD 117
Query: 126 KD--NFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQ-NDNY 182
+ + P ++ DV++ +D+GVWPESKS++D+G GPIPS WKG C+ N+
Sbjct: 118 EHTADLFPEAGSY------SDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNF 171
Query: 183 KGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPN 242
CN+KLIG R+ +G + + + + RD++GHGTHT +TA G+ V
Sbjct: 172 TASLCNRKLIGARFFARGYESTMGPIDES----KESRSPRDDDGHGTHTSSTAAGSVVEG 227
Query: 243 VSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLG 302
S+ G GTA+G +P+ARVA YKVCW C S+DIL+A D AI D V+V+S SLG
Sbjct: 228 ASLLGYASGTARGMAPRARVAVYKVCWL----GGCFSSDILAAIDKAIADNVNVLSMSLG 283
Query: 303 SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTS 362
++ ++ +AIG+F AM GI+ +AGN+GP S+ NVAPWI TVGA T DR+F +
Sbjct: 284 GGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPA 343
Query: 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQG 422
LGN G S+ + L D P I +A A + + C G++ P KV+G
Sbjct: 344 LAILGNGKNFTGVSLFKGEALPD-KLLPFIYAGNASNAT----NGNLCMTGTLIPEKVKG 398
Query: 423 KILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVY 481
KI++C G +KG AG VGMIL ++ +G +++ H LP + G+ +
Sbjct: 399 KIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIR 458
Query: 482 AYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFT 541
Y+ + NPTAS++ T +PS ++A F+SRGPN I P I KPD+ APGV+I+AA+T
Sbjct: 459 HYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWT 518
Query: 542 EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601
A+GP+ + RR+ + ++SGTSMSCPHV+G+ L+K++HP+WSPAAI+SA+MTTA
Sbjct: 519 GAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKT 578
Query: 602 DSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTID 661
+P+LD TG+ +TPF +GAGHV+P +A +PGL+YDLT EDYLG++C Y I
Sbjct: 579 YKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIR 638
Query: 662 LFTAPKKFTC--PKSFNLADFNYPSIAVPKLN-GTITFTRKVKNVGAANSTYKARTSEIT 718
+ + +TC KS+++AD NYPS AV G +TR V +VG A + TSE T
Sbjct: 639 SVSR-RNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETT 697
Query: 719 GVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
GV VEP++LNF + E+K++ V F+V KP+ G G + W
Sbjct: 698 GVKISVEPAVLNFKEANEKKSYTVTFTVD-SSKPS--GSNSFGSIEW 741
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 306/777 (39%), Positives = 433/777 (55%), Gaps = 40/777 (5%)
Query: 4 PNLYFLLLLFSLLSFLQTPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFL 63
P +FL ++F LL + K+ Y+V L +S + + D H FL +
Sbjct: 3 PKPFFLCIIF-LLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDW----HLSFLQEAV 57
Query: 64 GSVEEA----ESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW 119
VEE S + +SYG I GF A L E A+ L P VV+V PD ++ TT S+
Sbjct: 58 LGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSY 117
Query: 120 DFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQN 179
FLGL D F W K+RFG+ II +D+GVWPES SF D GM IP KWKGICQ
Sbjct: 118 KFLGL--DGF-GNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQE 174
Query: 180 -DNYKGVSCNKKLIGIRYINQG-TIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGG 237
+++ SCN+KLIG R+ +G + ++P+ +P+ + RD GHGTHT +T GG
Sbjct: 175 GESFSSSSCNRKLIGARFFIRGHRVANSPEESPN--MPREYISARDSTGHGTHTASTVGG 232
Query: 238 NFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVI 297
+ V +V G+G G A+G +P A +A YKVCW + C S+DIL+A D+AI D VDV+
Sbjct: 233 SSVSMANVLGNGAGVARGMAPGAHIAVYKVCW----FNGCYSSDILAAIDVAIQDKVDVL 288
Query: 298 SASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTD 357
S SLG +TIAIG+F AM GI + AAGN+GP + SV N APW+ T+GA T D
Sbjct: 289 SLSLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLD 348
Query: 358 REFTSYVTLGNKMVIKGASV-SQKGLLNDLDSYPLIGGADARIANVSEIDASE--CKKGS 414
R F + V L N ++ G S+ KG+ N G + + V+ D C +GS
Sbjct: 349 RRFPAVVRLANGKLLYGESLYPGKGIKN--------AGREVEVIYVTGGDKGSEFCLRGS 400
Query: 415 IDPAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473
+ +++GK++IC G EKG+ +AG V MIL +++ + + VH LP +
Sbjct: 401 LPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIG 460
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
YT+ + AY+N+T P A + T + +A F++RGP++ +P+I KPD+ APG
Sbjct: 461 YTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPG 520
Query: 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593
V+IIAA+ + GP+ RR+ + +MSGTSMSCPHV+GI L+++ +P+WSPAAIKSA
Sbjct: 521 VNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSA 580
Query: 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDR 653
+MTTA D + I D N + A FA GAGHVNP A++PGLVY++ DY+ Y+C
Sbjct: 581 LMTTADLYDRQGKAIKDGN--KPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTL 638
Query: 654 GYNQSTIDLFTAPKKFTCPKSFNLA---DFNYPSIAVPKLNGTIT--FTRKVKNVGAANS 708
G+ +S I L K +C NYPSIAV G T TR+V NVG+ NS
Sbjct: 639 GFTRSDI-LAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNS 697
Query: 709 TYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
Y G+ IV P L F + +++V F +K ++ + G + W
Sbjct: 698 IYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTW 754
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/729 (37%), Positives = 405/729 (55%), Gaps = 61/729 (8%)
Query: 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGA 86
K Y+VY+G +D D A + H L +GS ES + H+Y R NGF
Sbjct: 31 KNIYIVYMGRKL-------EDPDSAHLHHRAMLEQVVGSTFAPES-VLHTYKRSFNGFAV 82
Query: 87 VLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVI 146
L EE A+++ + GVVSVF +E +LHTTRSWDFLG P + ++++ +++
Sbjct: 83 KLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGF-------PLTVPRRSQVESNIV 135
Query: 147 IANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELR 206
+ +D+G+WPES SF D+G P P KWKG C+ N CN+K+IG R + G
Sbjct: 136 VGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN--NFRCNRKIIGARSYHIGR----- 188
Query: 207 AKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYK 266
+ P ++ RD GHGTHT +TA G V ++YG G GTA+GG P AR+AAYK
Sbjct: 189 -----PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYK 243
Query: 267 VCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI-AREHLKNTIAIGSFHAMMNGI 325
VCW ND C+ DIL+AYD AI DGVD+IS S+G R + + IAIGSFHA+ GI
Sbjct: 244 VCW----NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGI 299
Query: 326 VSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLND 385
++ +AGN GP+ + +++PW+L+V AST DR+F + V +GN +G S++ D
Sbjct: 300 LTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTF----D 355
Query: 386 LDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGA 445
YPL+ G D + + C S++P ++GKI++C A +G + + + GA
Sbjct: 356 NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE-ASFGPHE-FFKSLDGA 413
Query: 446 VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRP 505
G+++ S+ + LP++ L+ D + YI S ++P A++ S T N
Sbjct: 414 AGVLMTSNTRDYAD----SYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS- 468
Query: 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
+ ++ F+SRGPN + KPD++ PGV+I+AA+ +P +R + ++SGTS
Sbjct: 469 APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSV---APVGGIRRNTLFNIISGTS 525
Query: 566 MSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAG 625
MSCPH+ GI VKT +P WSPAAIKSA+MTTA ++ P + FAYG+G
Sbjct: 526 MSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE---------FAYGSG 576
Query: 626 HVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAP-KKFTCPKSFNLADFNYPS 684
HVNP A+ PGLVYD DY+ ++C +GYN + T T + + D NYPS
Sbjct: 577 HVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPS 636
Query: 685 IAV---PKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFK 741
+ P F R + +V STY+A S G++ V P++L+F G+ K+F
Sbjct: 637 FGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFT 696
Query: 742 VAF--SVKG 748
+ S+KG
Sbjct: 697 LTVRGSIKG 705
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 283/731 (38%), Positives = 391/731 (53%), Gaps = 57/731 (7%)
Query: 26 AKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFG 85
AK Y++YLG D+ + H L S S EEA+ +SY + N F
Sbjct: 34 AKDFYIIYLGDRP-------DNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFA 86
Query: 86 AVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDV 145
A L AK++ VVSV ++ KLHTT+SWDF+GL P +A + + DV
Sbjct: 87 AKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGL-------PLTAKRHLKAERDV 139
Query: 146 IIANVDSGVWPESKSFADDGMGPIPSKWKGIC-QNDNYKGVSCNKKLIGIRYINQ-GTIE 203
II +D+G+ P+S+SF D G+GP P+KWKG C N+ G CN K+IG +Y G +
Sbjct: 140 IIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTG--CNNKIIGAKYFKHDGNVP 197
Query: 204 ELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVA 263
++P D +GHGTHT +T G V N S+YG GTA+G P AR+A
Sbjct: 198 AGEVRSPI-----------DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLA 246
Query: 264 AYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMN 323
YKVCW CA DIL+ ++ AIHDGV++IS S+G ++ ++I++GSFHAM
Sbjct: 247 MYKVCW---ARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRK 303
Query: 324 GIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383
GI++VA+AGN GP G+V N PWILTV AS DR F S + LGN G +S
Sbjct: 304 GILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISM--FS 361
Query: 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQA 443
SYPL+ G DA + A C S+D KV+GK+++C G E
Sbjct: 362 PKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVE--STIKSY 419
Query: 444 GAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNT 503
G G I+VS + N + M P +N + G+ +Y YINST+ +AS KT T
Sbjct: 420 GGAGAIIVSDQYLDNAQIFMA---PATSVNSSVGDIIYRYINSTR--SASAVIQKTRQVT 474
Query: 504 RPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSG 563
P+ +A F+SRGPN + KPD+ APG+DI+AAFT + + + + ++SG
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 564 TSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYG 623
TSM+CPHVAG+ VK+ HPDW+PAAIKSAI+T+A +PI K FAYG
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA-------KPI--SRRVNKDAEFAYG 585
Query: 624 AGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPK---SFNLADF 680
G +NP A PGLVYD+ Y+ ++C GYN +T+ + +C
Sbjct: 586 GGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSL 645
Query: 681 NYPSIAV----PKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGE 736
NYP+I + K + F R+V NVG +S Y A GV VEP L+F+K +
Sbjct: 646 NYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQ 705
Query: 737 EKTFKVAFSVK 747
+++FKV K
Sbjct: 706 KRSFKVVVKAK 716
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 212/469 (45%), Gaps = 82/469 (17%)
Query: 227 HGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAY 286
HGTH T N GT KG +P A + AY+V S + ++++
Sbjct: 233 HGTHVAGTVAAN------------GTIKGVAPDATLLAYRVL---GPGGSGTTENVIAGV 277
Query: 287 DLAIHDGVDVISASLG-SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA 345
+ A+ DG DV++ SLG S+ + A+ AM G+V+V + GNSGP+
Sbjct: 278 ERAVQDGADVMNLSLGNSLNNPDWATSTALD--WAMSEGVVAVTSNGNSGPNG------- 328
Query: 346 PWILTVGASTTDREFTSY----VTLGNKMVIKGASVSQKGL-LNDLDSYPLIGGADARIA 400
W TVG+ T RE S + L V G+ S K + N D D +
Sbjct: 329 -W--TVGSPGTSREAISVGATQLPLNEYAVTFGSYSSAKVMGYNKED--------DVKAL 377
Query: 401 NVSEIDASECKKGS---IDPAKVQGKI-LICYGARYGDEKGQWAAQAGAVGMILVS--SK 454
N E++ E G + + GK+ ++ G+ +K A +AGA+GM++ + S
Sbjct: 378 NNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSG 437
Query: 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMM----A 510
E V M +PT L+ DGE + + + + + +KT F S+ + A
Sbjct: 438 EIEANVPGM--SVPTIKLSLEDGEKLVSALKAGE--------TKTTFKLTVSKALGEQVA 487
Query: 511 FFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS--GTSMSC 568
F+SRGP M D + KPD++APGV+I++ P+ D H PY S GTSM+
Sbjct: 488 DFSSRGPVM-DTWMIKPDISAPGVNIVSTI-----PTHDPDH----PYGYGSKQGTSMAS 537
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVN 628
PH+AG V ++K P WS IK+AIM TA S+ + N A GAG
Sbjct: 538 PHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEVYPHN--------AQGAGSAR 589
Query: 629 PNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNL 677
+A+ + Y ++ + G N++ + FT + + KS+ L
Sbjct: 590 IMNAIKADSLVSPGSYSYGTFLKENG-NETKNETFTIENQSSIRKSYTL 637
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 155/615 (25%), Positives = 259/615 (42%), Gaps = 90/615 (14%)
Query: 61 SFLGSVEE-AESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW 119
S +VE+ + + SYG +NGF + +L+ GV +V AK++
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL---AKVYYPTDA 189
Query: 120 DFLGLEKDNFIPPDSAWKKARF-GEDVIIANVDSGVWPESKS--FADDGMGPIPSKWKGI 176
+ ++ + W ++ GE +++ +DSG+ P K +DD K +
Sbjct: 190 -----KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDD-------KDVKL 237
Query: 177 CQNDNYKGVSCNKKLIGIRYINQGTIEELR-AKNPDAVIPQNLTTGRDEEGHGTHTLATA 235
++D K K RY N A N D + + +E HG H
Sbjct: 238 TKSDVEKFTDTAKHG---RYFNSKVPYGFNYADNNDTITDDTV-----DEQHGMHVAGII 289
Query: 236 GGNFVPNVSVYGSGYGTAK---GGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292
G N G+G AK G +P+A++ A KV + + + SA ++SA + +
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKI 341
Query: 293 GVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWIL-- 349
G DV++ SLGS + + L++ +A +G +V +AGNSG + E V
Sbjct: 342 GADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGL 401
Query: 350 ----TVGASTTDREFTSYVTLGNKMVIKGASVSQKGL-------LNDLDSYPLIGGADAR 398
VG+ T R T+ + N VI A G L S+ G D +
Sbjct: 402 QDNEMVGSPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSHDFTGSFDQK 461
Query: 399 IANVSEIDASECKKGSID--PAKVQGKILICYGARYG-DEKGQWAAQAGAVGMILVSSKE 455
+ + + KG++ A +GKI I + D+K ++A AGA G+I+V++
Sbjct: 462 KFYIVKDASGNLSKGALADYTADAKGKIAIVKRGEFSFDDKQKYAQAAGAAGLIIVNTDG 521
Query: 456 SGNKV--LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR-----M 508
+ + + + PT L+ G+ + ++ T +P S+ K P++
Sbjct: 522 TATPMTSIALTTTFPTFGLSSVTGQKLVDWV--TAHPDDSL-GVKITLAMLPNQKYTEDK 578
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
M+ FTS GP + FKPD+TAPG +I + + Y MSGTSM+
Sbjct: 579 MSDFTSYGP--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMAS 623
Query: 569 PHVAGIVGLVK-TLHPDWSP-----AAIKSAIMTT--ARAEDSSNRPILDQNTGEK-ATP 619
P +AG L+K L+ +P +K +T E ++ +PI D N +P
Sbjct: 624 PFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSP 683
Query: 620 FAYGAGHVNPNSALD 634
GAG V+ +A+D
Sbjct: 684 RRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 158/615 (25%), Positives = 257/615 (41%), Gaps = 90/615 (14%)
Query: 61 SFLGSVEE-AESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW 119
S +VE+ + + SYG +NGF + +L+ GV +V AK++
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL---AKVYYPTDA 189
Query: 120 DFLGLEKDNFIPPDSAWKKARF-GEDVIIANVDSGVWPESKS--FADDGMGPIPSKWKGI 176
+ ++ + W ++ GE +++ +DSG+ P K +DD K +
Sbjct: 190 -----KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDD-------KDVKL 237
Query: 177 CQNDNYKGVSCNKKLIGIRYINQGTIEELR-AKNPDAVIPQNLTTGRDEEGHGTHTLATA 235
++D K K RY N A N D + + +E HG H
Sbjct: 238 TKSDVEKFTDTAKHG---RYFNSKVPYGFNYADNNDTITDDTV-----DEQHGMHVAGII 289
Query: 236 GGNFVPNVSVYGSGYGTAK---GGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292
G N G+G AK G +P+A++ A KV + + + S+ ++SA + +
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKI 341
Query: 293 GVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWIL-- 349
G DV++ SLGS + + L++ +A +G +V +AGNSG + E V
Sbjct: 342 GADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGL 401
Query: 350 ----TVGASTTDREFTSYVTLGNKMVIKGASVSQKGL-------LNDLDSYPLIGGADAR 398
VG T R T+ + N VI A G L S G D +
Sbjct: 402 QDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPGTIQLSSNDFTGSFDQK 461
Query: 399 IANVSEIDASECKKGSID--PAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKE 455
V + + KG++ A +GKI I G D+K ++A AGA G+I+V++
Sbjct: 462 KFYVVKDASGNLSKGALADYTADAKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVNNDG 521
Query: 456 SGNKVLNM--VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR-----M 508
+ V +M PT L+ G+ + ++ T +P S+ K P++
Sbjct: 522 TATPVTSMALTTTFPTFGLSSVTGQKLVDWV--TAHPDDSL-GVKIALTLVPNQKYTEDK 578
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
M+ FTS GP + FKPD+TAPG +I + + Y MSGTSM+
Sbjct: 579 MSDFTSYGP--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMAS 623
Query: 569 PHVAGIVGLVK-TLHPDWSP-----AAIKSAIMTT--ARAEDSSNRPILDQNTGEK-ATP 619
P +AG L+K L+ +P +K +T E ++ +PI D N +P
Sbjct: 624 PFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSP 683
Query: 620 FAYGAGHVNPNSALD 634
GAG V+ +A+D
Sbjct: 684 RRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 157/615 (25%), Positives = 255/615 (41%), Gaps = 90/615 (14%)
Query: 61 SFLGSVEE-AESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW 119
S +VE+ + + SYG +NGF + +L+ GV +V AK++
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL---AKVYYPTDA 189
Query: 120 DFLGLEKDNFIPPDSAWKKARF-GEDVIIANVDSGVWPESKS--FADDGMGPIPSKWKGI 176
+ ++ + W ++ GE +++ +DSG+ P K +DD K +
Sbjct: 190 -----KANSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDD-------KDVKL 237
Query: 177 CQNDNYKGVSCNKKLIGIRYINQGTIEELR-AKNPDAVIPQNLTTGRDEEGHGTHTLATA 235
++D K K RY N A N D + + +E HG H
Sbjct: 238 TKSDVEKFTDTAKHG---RYFNSKVPYGFNYADNNDTITDDTV-----DEQHGMHVAGII 289
Query: 236 GGNFVPNVSVYGSGYGTAK---GGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292
G N G+G AK G +P+A++ A KV + + + SA ++SA + +
Sbjct: 290 GAN--------GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKI 341
Query: 293 GVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWIL-- 349
G DV++ SLGS + + L++ +A +G +V +AGNSG + E V
Sbjct: 342 GADVLNMSLGSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGL 401
Query: 350 ----TVGASTTDREFTSYVTLGNKMVIKGASVSQKGL-------LNDLDSYPLIGGADAR 398
VG T R T+ + N VI A G L S G D +
Sbjct: 402 QDNEMVGTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQK 461
Query: 399 IANVSEIDASECKKGSID--PAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKE 455
V + + KG + A +GKI I G +K ++A AGA G+I+V++
Sbjct: 462 KFYVVKDASGNLSKGKVADYTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDG 521
Query: 456 SGNKVLNM--VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR-----M 508
+ V +M PT L+ G+ + ++ + +P S+ K P++
Sbjct: 522 TATPVTSMALTTTFPTFGLSSVTGQKLVDWVAA--HPDDSL-GVKIALTLVPNQKYTEDK 578
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
M+ FTS GP + FKPD+TAPG +I + + Y MSGTSM+
Sbjct: 579 MSDFTSYGP--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMAS 623
Query: 569 PHVAGIVGLVK-TLHPDWSP-----AAIKSAIMTT--ARAEDSSNRPILDQNTGEK-ATP 619
P +AG L+K L+ +P +K +T E ++ +PI D N +P
Sbjct: 624 PFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNTAQPINDINYNNVIVSP 683
Query: 620 FAYGAGHVNPNSALD 634
GAG V+ +A+D
Sbjct: 684 RRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 150/620 (24%), Positives = 253/620 (40%), Gaps = 100/620 (16%)
Query: 61 SFLGSVEE-AESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW 119
S +VE+ + + SYG +NGF + +L+ GV +V AK++
Sbjct: 133 SVKAAVEQVTQQTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL---AKVYYPTDA 189
Query: 120 DFLGLEKDNFIPPDSAWKKARF-GEDVIIANVDSGVWPESKS--FADDGMGPIP----SK 172
+ ++ + W ++ GE +++ +D+G+ P K +DD + K
Sbjct: 190 -----KANSMANVQAVWSNYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEK 244
Query: 173 WKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTL 232
+ ++ Y +K G Y A N D + + +E HG H
Sbjct: 245 FTDTAKHGRY---FTSKVPYGFNY----------ADNNDTITDDTV-----DEQHGMHVA 286
Query: 233 ATAGGNFV---PNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA 289
G N P SV G +P+A++ A KV + + + SA ++SA + +
Sbjct: 287 GIIGANGTGDDPTKSVVGV--------APEAQLLAMKVFTNSDTSATTGSATLVSAIEDS 338
Query: 290 IHDGVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWI 348
G DV++ SLGS + + L++ +A +G +V +AGNSG + + V
Sbjct: 339 AKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGSATQGVNKDY 398
Query: 349 L------TVGASTTDREFTSYVTLGNKMVIKGASVSQKGL-------LNDLDSYPLIGGA 395
VG T R T+ + N VI A G L S G
Sbjct: 399 YGLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSF 458
Query: 396 DARIANVSEIDASECKKGSID--PAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVS 452
D + V + + + KG+ A +GKI I G +K ++A AGA G+I+V+
Sbjct: 459 DQKKFYVVKDASGDLSKGAAADYTADAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVN 518
Query: 453 SKESGNKV--LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR--- 507
+ + + + + PT L+ G+ + ++ T +P S+ K P++
Sbjct: 519 NDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDWV--TAHPDDSL-GVKIALTLLPNQKYT 575
Query: 508 --MMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTS 565
M+ FTS GP + FKPD+TAPG +I + + Y MSGTS
Sbjct: 576 EDKMSDFTSYGP--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTS 620
Query: 566 MSCPHVAGIVGLVKT--------LHPDWSPAAIKSAIMTT--ARAEDSSNRPILDQNTGE 615
M+ P +AG L+K + D+ +K +T E ++ +PI D N
Sbjct: 621 MASPFIAGSQALLKQALNNKNNPFYADYKQ--LKGTALTDFLKTVEMNTAQPINDINYNN 678
Query: 616 K-ATPFAYGAGHVNPNSALD 634
+P GAG V+ +A+D
Sbjct: 679 VIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 188/453 (41%), Gaps = 99/453 (21%)
Query: 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCAS 279
T D+E HGTH GN P S Y +G P+A++ +V
Sbjct: 187 TAVDQE-HGTHVSGILSGN-AP--SETKEPY-RLEGAMPEAQLLLMRVEI------VNGL 235
Query: 280 ADILSAYDLAIHDGVD----VISASLG--SIAREHLKNTIAIGSFHAMMNGIVSVAAAGN 333
AD Y AI D V+ VI+ S G ++A +L + +A G+ V +AGN
Sbjct: 236 ADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGN 295
Query: 334 SG-------------PDDGSVEN--VAPWILTVGASTTDREFTSYVTLGNKMVIKGASVS 378
PD G V A LTV + + D++ T T +K A
Sbjct: 296 DSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT------VKTADQQ 349
Query: 379 QKGLLNDLDSYPLIGGADARIANVSEIDASECKKG--SIDPAKVQGKI-LICYGARYGDE 435
K + P++ + R D + +G D V+GKI LI G +
Sbjct: 350 DKEM-------PVL--STNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKD 400
Query: 436 KGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASM 494
K A +AGAVG+++ +++ G + L V +P A ++ DG + +NP ++
Sbjct: 401 KIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKTI 454
Query: 495 TNSKTEFNTRPSRM-------MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPS 547
T FN P + ++ F+S G + KPD+ APG DI+++
Sbjct: 455 T-----FNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANNK--- 504
Query: 548 PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVK----TLHPDWSPAA----IKSAIMTTAR 599
Y +SGTSMS P VAGI+GL++ T +PD +P+ K +M++A
Sbjct: 505 ----------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 554
Query: 600 AEDSSNRPILDQNTGEKATPFAYGAGHVNPNSA 632
A + D++ +P GAG V+ A
Sbjct: 555 A-------LYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| 224122316 | 775 | predicted protein [Populus trichocarpa] | 0.968 | 0.958 | 0.586 | 0.0 | |
| 224056865 | 772 | predicted protein [Populus trichocarpa] | 0.951 | 0.945 | 0.589 | 0.0 | |
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.975 | 0.972 | 0.563 | 0.0 | |
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.946 | 0.944 | 0.568 | 0.0 | |
| 227053577 | 771 | subtilisin-like serine protease [Carica | 0.947 | 0.942 | 0.556 | 0.0 | |
| 356510927 | 773 | PREDICTED: subtilisin-like protease-like | 0.949 | 0.941 | 0.547 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.940 | 0.967 | 0.553 | 0.0 | |
| 296090005 | 803 | unnamed protein product [Vitis vinifera] | 0.942 | 0.900 | 0.547 | 0.0 | |
| 255567212 | 771 | Xylem serine proteinase 1 precursor, put | 0.955 | 0.950 | 0.568 | 0.0 | |
| 357462409 | 772 | Subtilisin-like protease [Medicago trunc | 0.973 | 0.967 | 0.531 | 0.0 |
| >gi|224122316|ref|XP_002330593.1| predicted protein [Populus trichocarpa] gi|222872151|gb|EEF09282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/761 (58%), Positives = 538/761 (70%), Gaps = 18/761 (2%)
Query: 9 LLLLFSLLSFLQTPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEE 68
LLL F + S LQ PT A KK YVVYLGSHSHG PT DIDR H+E LG F S E+
Sbjct: 10 LLLSFFIFSLLQPPTFAIKKSYVVYLGSHSHGLEPTQADIDRVTDSHYELLGLFTESKEK 69
Query: 69 AESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDN 128
A+ IF+SY INGF AVLEEE A L HP VVSVF ++ KLHTT SW FLGLEKD
Sbjct: 70 AKEKIFYSYTNSINGFAAVLEEEEASALAKHPDVVSVFLNKARKLHTTHSWSFLGLEKDG 129
Query: 129 FIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCN 188
+PP S WKKAR+GEDVII N+D+GVWPESKSF+D+G+GP+PSKW+GICQN +GV CN
Sbjct: 130 VVPPSSLWKKARYGEDVIIGNLDTGVWPESKSFSDEGLGPVPSKWRGICQNATKEGVPCN 189
Query: 189 KKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGS 248
+KLIG RY N+G + + + T RD EGHGTHTL+TA GNFVP +V+G+
Sbjct: 190 RKLIGARYFNKGY------GSIGGHLNSSFQTARDIEGHGTHTLSTAAGNFVPGANVFGN 243
Query: 249 GYGTAKGGSPKARVAAYKVCWKP---NENDSCASADILSAYDLAIHDGVDVISASLGSIA 305
G GTAKGGSP+ARVAAYKVCW NE C ADIL+ +D+AI DGVDV+S SLG
Sbjct: 244 GKGTAKGGSPRARVAAYKVCWPAVGVNEG-GCYEADILAGFDVAISDGVDVLSVSLGGAI 302
Query: 306 REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVT 365
E+ + IAIGSFHA GI VA+AGNSGP GSV NVAPW++TVGAST DR FT YV
Sbjct: 303 DEYSDDAIAIGSFHAFKKGITVVASAGNSGPGPGSVSNVAPWLITVGASTLDRAFTIYVA 362
Query: 366 LGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKIL 425
LGN+ +KG S+SQK L YPLI GA A+ +N SE DA+ CK G++D KV+GKIL
Sbjct: 363 LGNRKHLKGVSLSQKS-LPARKFYPLISGARAKASNQSEEDANLCKPGTLDSKKVKGKIL 421
Query: 426 ICY-GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYI 484
+C G EKG A AGAVGMIL + +ESGN +L H LP AH+ TDG++V++Y+
Sbjct: 422 VCLRGVNPRVEKGHVALLAGAVGMILANDEESGNGILADAHVLPAAHIISTDGQAVFSYL 481
Query: 485 NSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEAS 544
NST++P A +TN +TE T+P+ MA F+SRGPN+++ +I KPD+TAPGV +IAAFT A+
Sbjct: 482 NSTKDPWAYITNVRTELGTKPAPFMASFSSRGPNILEESILKPDITAPGVSVIAAFTLAT 541
Query: 545 GPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSS 604
GP+ KRRIP+ SGTSMSCPHV+GIVGL+K+LHPDWSPAAI+SAIMTTA D++
Sbjct: 542 GPTDTAYDKRRIPFNTESGTSMSCPHVSGIVGLLKSLHPDWSPAAIRSAIMTTATTRDNN 601
Query: 605 NRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFT 664
PILD ++ +ATPFAYGAGHV PN A DPGLVYDLT D+L Y+C RGY + LFT
Sbjct: 602 GDPILD-SSNTRATPFAYGAGHVQPNRAADPGLVYDLTVNDFLNYLCSRGYTAKDLKLFT 660
Query: 665 APKKFTCPKSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIV 724
K +TCPKSF+L DFNYPSI+ LN TIT TR+VKNVG+ Y E TGV V
Sbjct: 661 -DKPYTCPKSFSLTDFNYPSISAINLNDTITVTRRVKNVGSPGKYY-IHVREPTGVLVSV 718
Query: 725 EPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
P+ L F K GEEKTFKV F + K DY F G++ W
Sbjct: 719 APTTLEFKKLGEEKTFKVTFKLAPKWKLKDYTF---GILTW 756
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056865|ref|XP_002299062.1| predicted protein [Populus trichocarpa] gi|222846320|gb|EEE83867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/745 (58%), Positives = 532/745 (71%), Gaps = 15/745 (2%)
Query: 23 TSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFIN 82
T A +K YVVYLGSHSHG PT DI+R H+E LGSF E+A+ IF+SY IN
Sbjct: 25 TFATQKSYVVYLGSHSHGLEPTQSDIERVTDSHYELLGSFTEGKEKAKEKIFYSYTNNIN 84
Query: 83 GFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFG 142
GF AVLEEE A L HP VVSVF ++G KLHTTRSW+FLGLE D +PP S WKKAR+G
Sbjct: 85 GFAAVLEEEEASSLAKHPDVVSVFLNKGKKLHTTRSWNFLGLEADGMVPPYSLWKKARYG 144
Query: 143 EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTI 202
EDVII N+D+GVWPESKSF+D+GMGP+PSKW+GICQ+DN GV CN+KLIG RY N+G
Sbjct: 145 EDVIIGNLDTGVWPESKSFSDEGMGPVPSKWRGICQHDNKDGVVCNRKLIGTRYFNKGYA 204
Query: 203 EELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARV 262
N + T RD EGHGTHTL+TA GNFVP V G G GTAKGGSP AR
Sbjct: 205 AYAGHLN------SSFQTARDSEGHGTHTLSTAAGNFVPGADVLGYGNGTAKGGSPHARA 258
Query: 263 AAYKVCWKP-NENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAM 321
AAYKVCW P N ++ C ADIL+A+D+AI DGVDV+S SLG E + IAIGSFHA+
Sbjct: 259 AAYKVCWPPINGSNECFDADILAAFDVAISDGVDVLSVSLGGDPAEFSDDAIAIGSFHAV 318
Query: 322 MNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381
GI VA+AGNSGP G+V NVAPW++TVGAST DR FT YV LGN+ +KGAS+S+K
Sbjct: 319 AKGITVVASAGNSGPSPGTVSNVAPWLITVGASTMDRAFTIYVALGNRKHLKGASLSEKR 378
Query: 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD-EKGQWA 440
L + YPLI ADA+ A+ SE DA CK G++DP KV+GKIL+C G +KG A
Sbjct: 379 LPAE-KFYPLISAADAKAADQSEEDALLCKPGALDPKKVKGKILVCLRGENGRVDKGHQA 437
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500
AGAVGMIL + + SGN+++ H LP AH+N+TDGE+V++Y+N T+ P A +TN +TE
Sbjct: 438 LLAGAVGMILANDENSGNEIIADTHVLPAAHVNFTDGEAVFSYLNFTKEPMAFLTNVRTE 497
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIM 560
T+P+ MA F+SRGPN+I+ +I KPD+TAPGV +IAAFT+A GPS E KRR PY
Sbjct: 498 LATKPAPFMASFSSRGPNIIEESILKPDITAPGVSVIAAFTQAIGPSDAEYDKRRTPYNT 557
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620
SGTSMSCPHV+GIVGL+KTLHP+WSPAAI+SAIMTTA D++ PI+D +T KATPF
Sbjct: 558 QSGTSMSCPHVSGIVGLLKTLHPEWSPAAIRSAIMTTATTRDNNGEPIMD-STNTKATPF 616
Query: 621 AYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADF 680
A GAGHV PN A DPGL+YDLT D+L ++C+RG + I LF+ K +TCPKSF+LADF
Sbjct: 617 ADGAGHVQPNHAADPGLIYDLTVNDFLNFLCNRGNTKKNIKLFS-DKPYTCPKSFSLADF 675
Query: 681 NYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTF 740
NYPSI V LN +IT TR+VKNVG+ TY GV+ V PSIL F K GEEK F
Sbjct: 676 NYPSITVTNLNDSITVTRRVKNVGSP-GTYNIHIRAPPGVTVSVAPSILRFQKIGEEKMF 734
Query: 741 KVAFSVKGDDKPTDYGFWRIGLVRW 765
KV F + TDY F G++ W
Sbjct: 735 KVTFKLAPKAVLTDYVF---GMLTW 756
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/763 (56%), Positives = 539/763 (70%), Gaps = 15/763 (1%)
Query: 1 MGLPNLYFLLLLFSLLSFLQTPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLG 60
M LP+ LL F L+ +Q PT A+ KPYVVY G HSHG P+S D + A+ H+EFLG
Sbjct: 1 MRLPSPTLCLLPFLFLTLVQRPTFASIKPYVVYFGGHSHGPKPSSFDANLAKDSHYEFLG 60
Query: 61 SFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWD 120
SFLGS E AE +IF+SY R INGF A LE+E A ++ HP VVSVF ++G K HTT SW
Sbjct: 61 SFLGSREFAEDAIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWS 120
Query: 121 FLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQND 180
FLGLEKD +P S WKKARFGED II N+D+GVWPES+SF+D+G+GP+PSKWKGICQN
Sbjct: 121 FLGLEKDGVVPSSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNG 180
Query: 181 NYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFV 240
G CN+KLIG RY N+G + N + T RDE+GHG+HTL+TAGGNFV
Sbjct: 181 YDPGFHCNRKLIGARYFNKGYASIVGHLN------SSFDTPRDEDGHGSHTLSTAGGNFV 234
Query: 241 PNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISAS 300
SV+ G GTAKGGSPKARVAAYKVC+ P + D C ADIL+A+D AI DGVDV+S S
Sbjct: 235 AGASVFYMGNGTAKGGSPKARVAAYKVCYPPVDGDECFDADILAAFDAAISDGVDVLSVS 294
Query: 301 LGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREF 360
LG +++AIGSFHA+ +GIV + +AGNSGP DG+V NVAPW +TVGAST DREF
Sbjct: 295 LGGNPTAFFNDSVAIGSFHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREF 354
Query: 361 TSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKV 420
SYV LGNK+ KG S+S K L + +PL+ ADAR N S +A CK GS+DP K
Sbjct: 355 PSYVVLGNKISFKGESLSAKALPKN-KFFPLMSAADARATNASVENALLCKDGSLDPEKA 413
Query: 421 QGKILICY-GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGES 479
+GKIL+C G +KGQ AA AGAVGM+L ++K++GN++L H LP +H+NYT G +
Sbjct: 414 KGKILVCLRGINARVDKGQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGVA 473
Query: 480 VYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAA 539
++ YINST+ P A +T+ T T+P+ ++A F+S+GPN + P I KPD+TAPGV +IAA
Sbjct: 474 IFKYINSTEYPVAYITHPVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIAA 533
Query: 540 FTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
+T+A GP+ + RR+ + +SGTSMSCPHV+GIVGL+KTLHP WSPA+IKSAIMTTA
Sbjct: 534 YTKAQGPTNQDFDTRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTAM 593
Query: 600 AEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQST 659
+D++ PIL+ N KA+PF+YGAGH+ PN A+DPGLVYDLT DYL +C GYN++
Sbjct: 594 TQDNTMEPILNANH-TKASPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNETQ 652
Query: 660 IDLFT-APKKFTCP-KSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEI 717
I F+ AP + CP K +LA+FNYPSI VPK NG+IT +R VKNVG+ STYK R +
Sbjct: 653 ISTFSDAP--YECPSKPISLANFNYPSITVPKFNGSITLSRTVKNVGSP-STYKLRIRKP 709
Query: 718 TGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRI 760
TGVS VEP L F K GEEK F V KG DY F +
Sbjct: 710 TGVSVSVEPKKLEFKKVGEEKAFTVTLKGKG-KAAKDYVFGEL 751
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/737 (56%), Positives = 537/737 (72%), Gaps = 11/737 (1%)
Query: 22 PTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFI 81
PT A ++ Y+VYLG+HSHG P+SDD+D+ H+EFLGSFLGS + A+ +I +SY R I
Sbjct: 22 PTFAIERSYIVYLGAHSHGPEPSSDDLDQVTESHYEFLGSFLGSRDNAKEAIIYSYTRHI 81
Query: 82 NGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARF 141
NGF A L++ A Q+ NHP VVSVF ++G KLHTTRSW FLGLE D IP +S WKKARF
Sbjct: 82 NGFAATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWHFLGLENDGIIPSNSIWKKARF 141
Query: 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGT 201
G+D II N+D+GVWPES SF+D+GMGPIPS+W+GICQND G CN+KLIG RY +QG
Sbjct: 142 GQDTIIGNLDTGVWPESASFSDEGMGPIPSRWRGICQNDKDAGFHCNRKLIGARYFHQGY 201
Query: 202 IEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKAR 261
+ + N + T RD EGHG+HTL+TAGGNFV SV+G G GTAKGGSPKAR
Sbjct: 202 AAAVGSLN------SSFHTPRDTEGHGSHTLSTAGGNFVEGASVFGFGNGTAKGGSPKAR 255
Query: 262 VAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAM 321
VAAYKVCW P + C ADIL+A+D+AIHDGVDV+SASLG + ++++IGSFHA+
Sbjct: 256 VAAYKVCWPPVGGNECFDADILAAFDIAIHDGVDVLSASLGGLPTPFFNDSLSIGSFHAV 315
Query: 322 MNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381
+GIV V +AGNSGP DG+V N++PW TVGAST DR+F SY+ LGNK ++G S+S K
Sbjct: 316 KHGIVVVCSAGNSGPADGTVSNISPWQFTVGASTMDRQFPSYLVLGNKKRLEGGSLSPKA 375
Query: 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQWA 440
L + +PLI ADA+ AN S DA CK G++D +KV+GKIL+C G +KGQ A
Sbjct: 376 LPPN-KFFPLISAADAKAANASADDALLCKAGTLDHSKVKGKILVCLRGENARVDKGQQA 434
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500
A AGAVGM+L +++ +GN+V+ H LP +H+N+TDG +V+ Y+NST++P A +T S TE
Sbjct: 435 ALAGAVGMVLANNELTGNEVIADPHVLPASHINFTDGVAVFTYLNSTKSPIAYITPSTTE 494
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIM 560
T+P+ MA F+S+GPN I P I KPD+TAPGV +IAA+TEA GP+ + KRR+ +
Sbjct: 495 LGTKPAPFMAAFSSKGPNTITPEILKPDITAPGVSVIAAYTEAQGPTNQDFDKRRVLFNS 554
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620
+SGTSMSCPHV+GIVGL+KTLHPDWSPAAI+SA+MTTAR D+S IL+ + KATPF
Sbjct: 555 VSGTSMSCPHVSGIVGLLKTLHPDWSPAAIRSAMMTTARTMDNSMEAILNASY-FKATPF 613
Query: 621 AYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADF 680
+YGAGHV PN A++PGLVYDL DYL ++C GYNQ+ I +F+ + +TCPK +L +F
Sbjct: 614 SYGAGHVRPNRAMNPGLVYDLNVNDYLNFLCALGYNQTLIKMFSE-RPYTCPKPISLTNF 672
Query: 681 NYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTF 740
NYPSI VPKL+G+IT TR +KNVG TYKAR + TG+S V+P L F K GEEKTF
Sbjct: 673 NYPSITVPKLHGSITVTRTLKNVGPPG-TYKARIRKPTGISVSVKPDSLKFNKIGEEKTF 731
Query: 741 KVAFSVKGDDKPTDYGF 757
+ + DY F
Sbjct: 732 SLTLQAERAGAARDYVF 748
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/739 (55%), Positives = 532/739 (71%), Gaps = 12/739 (1%)
Query: 21 TPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRF 80
TP A+K YVVYLG+HSHG +S D+DR + H++FLGSFLGS EEA+ SIF+SY +
Sbjct: 21 TPVIASKSSYVVYLGAHSHGLELSSADLDRVKESHYDFLGSFLGSPEEAQESIFYSYTKH 80
Query: 81 INGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKAR 140
INGF A L +E A +L HP VVSVF ++G KLHTTRSWDFLGLE++ +P S WKKAR
Sbjct: 81 INGFAAELNDEVAAKLAKHPKVVSVFLNKGRKLHTTRSWDFLGLEQNGVVPSSSIWKKAR 140
Query: 141 FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQG 200
FGED II N+D+GVWPESKSF+D+G+GPIPSKW+GIC + CN+KLIG R+ N+G
Sbjct: 141 FGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWRGICDHGKDSSFHCNRKLIGARFFNRG 200
Query: 201 TIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKA 260
+ + N + + RD EGHGTHTL+TAGGN V N SV+G G GTAKGGSP+A
Sbjct: 201 YASAVGSLN------SSFESPRDNEGHGTHTLSTAGGNMVANASVFGLGKGTAKGGSPRA 254
Query: 261 RVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHA 320
RVAAYKVCW P + C ADIL+A+D AIHD VDV+S SLG A +++AIGSFHA
Sbjct: 255 RVAAYKVCWPPVLGNECFDADILAAFDAAIHDRVDVLSVSLGGTAGGFFNDSVAIGSFHA 314
Query: 321 MMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQK 380
+ +GIV V +AGNSGPDDGSV NVAPW +TVGAST DREF SYV LGN M KG S+S
Sbjct: 315 VKHGIVVVCSAGNSGPDDGSVSNVAPWQITVGASTMDREFPSYVLLGNNMSFKGESLSD- 373
Query: 381 GLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQW 439
+L + +PLI +A+ N S +A C+ G++DP KV+GKIL+C G +KGQ
Sbjct: 374 AVLPGTNFFPLISALNAKATNASNEEAILCEAGALDPKKVKGKILVCLRGLNARVDKGQQ 433
Query: 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKT 499
AA AGAVGMIL +S+ +GN+++ H LP +H+++TDG SV+ YIN T +P A MT KT
Sbjct: 434 AALAGAVGMILANSELNGNEIIADAHVLPASHISFTDGLSVFEYINLTNSPVAYMTRPKT 493
Query: 500 EFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYI 559
+ T+P+ +MA F+S+GPN++ P I KPD+TAPGV++IAA+T A GP+ +RR+ +
Sbjct: 494 KLPTKPAPVMAAFSSKGPNIVTPEILKPDITAPGVNVIAAYTRAQGPTNQNFDRRRVQFN 553
Query: 560 MMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATP 619
+SGTSMSCPHV+GIVGL+KTL+P WSPAAI+SAIMT+A D+ N IL+ + KATP
Sbjct: 554 SVSGTSMSCPHVSGIVGLLKTLYPSWSPAAIRSAIMTSATTMDNINESILNA-SNVKATP 612
Query: 620 FAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKS-FNLA 678
F+YGAGHV PN A++PGLVYDL +DYL ++C GY+++ I +F+ KF CP++ +LA
Sbjct: 613 FSYGAGHVQPNQAMNPGLVYDLNTKDYLKFLCALGYSKTLISIFSN-DKFNCPRTNISLA 671
Query: 679 DFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEK 738
DFNYPSI VP+L G IT +RKVKNVG+ +TY+ + G+S V+P IL F K GEEK
Sbjct: 672 DFNYPSITVPELKGLITLSRKVKNVGSP-TTYRVTVQKPKGISVTVKPKILKFKKAGEEK 730
Query: 739 TFKVAFSVKGDDKPTDYGF 757
+F V +K + +Y F
Sbjct: 731 SFTVTLKMKAKNPTKEYVF 749
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/740 (54%), Positives = 517/740 (69%), Gaps = 12/740 (1%)
Query: 22 PTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFI 81
P+ A KK YVVYLG+HSH +S D ++ HHEFLGSFLGS + SIF+SY R I
Sbjct: 23 PSFALKKSYVVYLGAHSHKPELSSVDFNQVTQSHHEFLGSFLGSSNTTKDSIFYSYTRHI 82
Query: 82 NGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARF 141
NGF A+LEEE A ++ HP V+SVF + G KLHTTRSWDF+GLE + I +S WKKARF
Sbjct: 83 NGFAAILEEEVAAEISKHPKVLSVFENRGRKLHTTRSWDFMGLEHNGVIQSNSIWKKARF 142
Query: 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGT 201
GE VII N+D+GVWPESKSF+++G+GPIPSKW+GIC N CN+KLIG RY N+G
Sbjct: 143 GEGVIIGNLDTGVWPESKSFSEEGLGPIPSKWRGICHNGIDHTFHCNRKLIGARYFNKGY 202
Query: 202 IEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKAR 261
N + + RD EGHGTHTL+TAGGN V VSV+G G+GTAKGGSP AR
Sbjct: 203 ASVAGPLN------SSFDSPRDNEGHGTHTLSTAGGNMVARVSVFGQGHGTAKGGSPMAR 256
Query: 262 VAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAM 321
VAAYKVCW P D C ADIL+A+DLAIHDGVDV+S SLG A K+++AIGSFHA
Sbjct: 257 VAAYKVCWPPVAGDECFDADILAAFDLAIHDGVDVLSLSLGGSASTFFKDSVAIGSFHAA 316
Query: 322 MNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381
+GIV V +AGNSGP D + EN+APW +TV AST DR+F +YV LGN + KG S+S
Sbjct: 317 KHGIVVVCSAGNSGPADATAENLAPWHVTVAASTMDRQFPTYVFLGNNITFKGESLSATI 376
Query: 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQWA 440
L YP+I DA++A+ DA C+ G++DP KV+GKI++C G +KG+ A
Sbjct: 377 LAPKF--YPIIKATDAKLASARAEDAVLCQNGTLDPNKVKGKIVVCLRGINARVDKGEQA 434
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500
AGAVGM+L + K +GN+++ H LP +H+N+TDG +V+ YINST+ P A +T+ KT+
Sbjct: 435 FLAGAVGMVLANDKTTGNEIIADPHVLPASHINFTDGSAVFTYINSTKFPVAYITHPKTQ 494
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIM 560
+T+P+ MA F+S+GPN I P I KPD+TAPGV +IAA+TEA GP+ KRRIP+
Sbjct: 495 LDTKPAPFMAAFSSKGPNTIVPEILKPDITAPGVSVIAAYTEAQGPTNQVFDKRRIPFNS 554
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620
+SGTSMSCPHV+GIVGL++ L+P WSPAAIKSAIMTTA D+ P+L+ G KATPF
Sbjct: 555 VSGTSMSCPHVSGIVGLLRALYPTWSPAAIKSAIMTTATTLDNEVEPLLNATDG-KATPF 613
Query: 621 AYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADF 680
+YGAGHV PN A+DPGLVYD T +DYL ++C GYN + I +FT + C K F+L +
Sbjct: 614 SYGAGHVQPNRAMDPGLVYDTTIDDYLNFLCALGYNATQISVFTE-GPYQCRKKFSLLNL 672
Query: 681 NYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTF 740
NYPSI VPKL+G++T TR++KNVG+ TY A G++ V+PSIL F GEEK+F
Sbjct: 673 NYPSITVPKLSGSVTVTRRLKNVGSPG-TYIAHVQNPHGITISVKPSILKFKNVGEEKSF 731
Query: 741 KVAFSVKGDDKPTDYGFWRI 760
KV F +Y F ++
Sbjct: 732 KVTFKAMQGKATNNYVFGKL 751
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/732 (55%), Positives = 528/732 (72%), Gaps = 11/732 (1%)
Query: 30 YVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLE 89
Y+VYLG+HSHG PTS D+DR H++FLGSFLGS E+A+ ++F+SY + INGF A+LE
Sbjct: 7 YIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAILE 66
Query: 90 EEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIAN 149
EE A ++ HP V+SVF ++G KLHTTRSW FL LEK+ I P+S WKKARFGED II N
Sbjct: 67 EEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTIIGN 126
Query: 150 VDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKN 209
+D+GVWPESKSF+D+GMG +PSKW+G CQ++ V+CN+KLIG RY N+G N
Sbjct: 127 LDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGPLN 186
Query: 210 PDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCW 269
+ + RD EGHG+HTL+TAGG+ V SV+G G GTAKGGSP ARVAAYKVCW
Sbjct: 187 ------SSFNSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVCW 240
Query: 270 KPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVA 329
N C ADI++A+D AIHDGVDV+S SLG A ++ + +AIGSFHA+ GIV V+
Sbjct: 241 PQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVVVS 300
Query: 330 AAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSY 389
+AGN GP D SV NV+PW++TVGAST DREFT+YV LGN+ +KG S+S KGL ++ Y
Sbjct: 301 SAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSLSTKGLPSN-KFY 359
Query: 390 PLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQWAAQAGAVGM 448
P+I DA+ AN S DA CK G+++P KV+GKIL+C G +KG+ AA AGAVG
Sbjct: 360 PVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALAGAVGF 419
Query: 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508
IL + +SGN+++ H LP +H+N++DG +V+ YINST+NP A +T +T+ +P+
Sbjct: 420 ILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGIKPAPF 479
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
MA F+S+GPN I P I KPD+TAPGV+IIAA++E+ GP+ KRRIP+ SGTSMSC
Sbjct: 480 MASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSGTSMSC 539
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVN 628
PH++GIVGL+KTLHPDWSPAAIKSAIMT+AR D + P+L+ ++ KATPF+YGAGHV
Sbjct: 540 PHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLN-SSNLKATPFSYGAGHVR 598
Query: 629 PNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADFNYPSIAVP 688
PN A+DPGLVYD T DYL ++C GYN++ + +F+ K + CPKSF+L FNYPSI P
Sbjct: 599 PNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ-KPYKCPKSFSLTGFNYPSITAP 657
Query: 689 KLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKG 748
L+G++T +R VKNVG TY A G+S V+P+ L F +YGEEK+F++ KG
Sbjct: 658 NLSGSVTISRTVKNVGTP-GTYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLTLKAKG 716
Query: 749 DDKPTDYGFWRI 760
DY F R+
Sbjct: 717 RRVAEDYVFGRL 728
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/740 (54%), Positives = 529/740 (71%), Gaps = 17/740 (2%)
Query: 28 KPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAV 87
+ Y+VYLG+HSHG PTS D+DR H++FLGSFLGS E+A+ ++F+SY + INGF A+
Sbjct: 57 QSYIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFAAI 116
Query: 88 LEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVII 147
LEEE A ++ HP V+SVF ++G KLHTTRSW FL LEK+ I P+S WKKARFGED II
Sbjct: 117 LEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDTII 176
Query: 148 ANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRA 207
N+D+GVWPESKSF+D+GMG +PSKW+G CQ++ V+CN+KLIG RY N+G
Sbjct: 177 GNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYAGP 236
Query: 208 KNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKV 267
N + + RD EGHG+HTL+TAGG+ V SV+G G GTAKGGSP ARVAAYKV
Sbjct: 237 LN------SSFNSARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKV 290
Query: 268 CWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVS 327
CW N C ADI++A+D AIHDGVDV+S SLG A ++ + +AIGSFHA+ GIV
Sbjct: 291 CWPQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVV 350
Query: 328 VAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIK------GASVSQKG 381
V++AGN GP D SV NV+PW++TVGAST DREFT+YV LGN+ +K G S+S KG
Sbjct: 351 VSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKNEHLQMGMSLSTKG 410
Query: 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQWA 440
L ++ YP+I DA+ AN S DA CK G+++P KV+GKIL+C G +KG+ A
Sbjct: 411 LPSN-KFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQA 469
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500
A AGAVG IL + +SGN+++ H LP +H+N++DG +V+ YINST+NP A +T +T+
Sbjct: 470 ALAGAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQ 529
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIM 560
+P+ MA F+S+GPN I P I KPD+TAPGV+IIAA++E+ GP+ KRRIP+
Sbjct: 530 LGIKPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNA 589
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620
SGTSMSCPH++GIVGL+KTLHPDWSPAAIKSAIMT+AR D + P+L+ ++ KATPF
Sbjct: 590 QSGTSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLN-SSNLKATPF 648
Query: 621 AYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADF 680
+YGAGHV PN A+DPGLVYD T DYL ++C GYN++ + +F+ K + CPKSF+L F
Sbjct: 649 SYGAGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQ-KPYKCPKSFSLTGF 707
Query: 681 NYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTF 740
NYPSI P L+G++T +R VKNVG TY A G+S V+P+ L F +YGEEK+F
Sbjct: 708 NYPSITAPNLSGSVTISRTVKNVGTP-GTYTASVKAPPGISVAVKPNKLEFREYGEEKSF 766
Query: 741 KVAFSVKGDDKPTDYGFWRI 760
++ KG DY F R+
Sbjct: 767 RLTLKAKGRRVAEDYVFGRL 786
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567212|ref|XP_002524587.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223536140|gb|EEF37795.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/749 (56%), Positives = 531/749 (70%), Gaps = 16/749 (2%)
Query: 20 QTPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGR 79
Q PT A+KK YVVY G+HSHG+ +S D H+ FLGSFLGS + AE SIF+SY R
Sbjct: 20 QRPTFASKKSYVVYFGAHSHGAQLSSADQKLVTESHYSFLGSFLGSRDIAEDSIFYSYTR 79
Query: 80 FINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKA 139
INGF A +E+E A ++ HP VVSVF + G KLHTT SW FLGLE+D +P +S WKKA
Sbjct: 80 HINGFAANIEDEVAAEIAKHPKVVSVFLNRGKKLHTTHSWSFLGLEQDGVVPSNSLWKKA 139
Query: 140 RFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQ 199
R+G+D+II N+D+GVWPESKSF+D G GPIPSKW+GICQN + + CN+KLIG RY N+
Sbjct: 140 RYGQDIIIGNLDTGVWPESKSFSDGGYGPIPSKWRGICQNGSDPYLHCNRKLIGARYFNK 199
Query: 200 GTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPK 259
G + N + RD EGHGTHTL+TAGGNFV SV+G G G AKGGSPK
Sbjct: 200 GYASVVGHLN------STFDSPRDREGHGTHTLSTAGGNFVAGASVFGLGKGKAKGGSPK 253
Query: 260 ARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFH 319
ARVAAYKVC+ P + C ADIL+A+D AI DGVDV+S SLG A + +++AIGSFH
Sbjct: 254 ARVAAYKVCYPPVGGNECFDADILAAFDTAISDGVDVLSVSLGGEAAQLFNDSVAIGSFH 313
Query: 320 AMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQ 379
A+ +GIV + +AGNSGP DG+ N+APW +TVGAST DREF SYV LGN + KG S+S+
Sbjct: 314 AVKHGIVVICSAGNSGPADGTASNLAPWQITVGASTIDREFPSYVVLGNNISYKGESLSK 373
Query: 380 KGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQ 438
K L + YPL+ ADAR AN S DA CK GS+D K +GKIL+C G +KGQ
Sbjct: 374 KALPKN-KFYPLMSAADARAANASVEDAKLCKAGSLDRKKAKGKILVCLRGVNARVDKGQ 432
Query: 439 WAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSK 498
AA+AGAVGM+LV+ K+SGN++L VH LP +HLNYT+G ++ YINST+ P A +T +
Sbjct: 433 QAARAGAVGMVLVNDKDSGNEILADVHILPASHLNYTNGVAILNYINSTKYPIAHVTRPE 492
Query: 499 TEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPY 558
T T+P+ MA F+SRGPN I P I KPD+TAPGV IIAA+T+A+GP+ ++ RR+ +
Sbjct: 493 THIGTKPAPFMAAFSSRGPNTITPEILKPDITAPGVSIIAAYTQAAGPTNEDFDTRRVLF 552
Query: 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618
+SGTSMSCPHV+GIVGL+K LHP WSPAAIKSAIMTTA D++ PIL+ T KA
Sbjct: 553 NSVSGTSMSCPHVSGIVGLLKILHPTWSPAAIKSAIMTTAMTRDNNREPILNA-TYSKAN 611
Query: 619 PFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFT-APKKFTCP-KSFN 676
PF+YGAGH+ PN A++PGLVYDLT DYL ++C GYN++ I F+ AP K CP K N
Sbjct: 612 PFSYGAGHIRPNQAMEPGLVYDLTANDYLNFLCALGYNETQILSFSQAPYK--CPNKLVN 669
Query: 677 LADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGE 736
LA+FNYPSI VPK G+IT TR+VKNVG+ +STYK + TG+S VEP ILNF + GE
Sbjct: 670 LANFNYPSITVPKFKGSITVTRRVKNVGSPSSTYKVSIRKPTGISVSVEPEILNFREIGE 729
Query: 737 EKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
EKTFKV K +Y F G + W
Sbjct: 730 EKTFKVTLKGKKFKARKEYVF---GELTW 755
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462409|ref|XP_003601486.1| Subtilisin-like protease [Medicago truncatula] gi|355490534|gb|AES71737.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/767 (53%), Positives = 528/767 (68%), Gaps = 20/767 (2%)
Query: 1 MGLP--NLYFLLLLFSLLSFLQTPTSAAKKPYVVYLGSHSHGSNPTSD-DIDRARIRHHE 57
MGLP L+FLL + + L TPT A K YVVYLGSHSH S S D +R H+E
Sbjct: 1 MGLPIPTLHFLLQILLVSL-LHTPTFAEIKSYVVYLGSHSHDSEELSSVDFNRVTDSHYE 59
Query: 58 FLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTR 117
FLGSFLGS + A+ SIF+SY R INGF A LEEE A ++ HP V+SVF + G KLHTT
Sbjct: 60 FLGSFLGSSKTAKESIFYSYTRHINGFAATLEEEVAAEIAKHPKVLSVFENNGRKLHTTH 119
Query: 118 SWDFLGLEKD-NFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGI 176
SW F+GLE IP S W KARFG+ +IIAN+D+GVWPESKSF+D+G GPIPSKW+GI
Sbjct: 120 SWGFMGLEDSYGVIPSSSIWNKARFGDGIIIANLDTGVWPESKSFSDEGFGPIPSKWRGI 179
Query: 177 CQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN--LTTGRDEEGHGTHTLAT 234
C CN+KLIG RY N+G L +P N T RD EGHG+HTL+T
Sbjct: 180 CDKGRDPSFHCNRKLIGARYFNKGYASRL-------TVPLNSSFETPRDNEGHGSHTLST 232
Query: 235 AGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294
AGGN VP VSV+G GYGTAKGGSPKARVA+YKVCW P D C ADIL+A+D AIHDGV
Sbjct: 233 AGGNMVPGVSVFGQGYGTAKGGSPKARVASYKVCWPPINGDECFDADILAAFDAAIHDGV 292
Query: 295 DVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGAS 354
DV+S SLG A +++AIGSFHA GIV V +AGNSGP+D + N+APW +TVGAS
Sbjct: 293 DVLSVSLGGSASNLFNDSVAIGSFHAAKKGIVVVCSAGNSGPNDATASNLAPWYITVGAS 352
Query: 355 TTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGS 414
T DREF SYV LGN + KG S+S L + YP+I DA++A+ + DA C+ G+
Sbjct: 353 TMDREFPSYVVLGNNLTFKGESLSAARLADKF--YPIIKATDAKLASATNEDAVLCQNGT 410
Query: 415 IDPAKVQGKILICY-GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473
+DP KV+GKI++C G +KG+ A AGAVGM+L + K +GN+++ H LP +H+N
Sbjct: 411 LDPKKVKGKIVLCLRGINARVDKGEQALLAGAVGMVLANDKTTGNEIIADPHVLPASHIN 470
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
++DG V+ Y+NS+++P A +T+ T+ +T+P+ MA F+S+GPN I P I KPD+TAPG
Sbjct: 471 FSDGVEVFHYVNSSKSPVAYITHPTTKLHTKPAPFMAAFSSKGPNTIIPEILKPDITAPG 530
Query: 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593
V +IAA+TEA GP+ E RRI + +SGTSMSCPH++GIVGL+++L+P W+PAAIKSA
Sbjct: 531 VSVIAAYTEAEGPTNQEFDNRRIQFNSVSGTSMSCPHISGIVGLLRSLYPSWTPAAIKSA 590
Query: 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDR 653
IMTTA D+ PI++ T +ATPF+YGAGHV PNSA+DPGLVYD+T DY ++C
Sbjct: 591 IMTTATTLDNKAEPIMNA-TKSQATPFSYGAGHVQPNSAMDPGLVYDITTNDYFNFLCAL 649
Query: 654 GYNQSTIDLFTAPKKFTCPKSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKAR 713
GYN++ + LF+ + C K+F++ + NYPSI VP L+G++T TR +KNVGA TY
Sbjct: 650 GYNETQMSLFSK-GPYKCHKNFSILNLNYPSITVPNLSGSVTVTRTLKNVGAPG-TYIVH 707
Query: 714 TSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRI 760
+G++ V+P+IL F K GEEK F+V VK Y F ++
Sbjct: 708 VQSPSGITISVKPNILEFKKVGEEKRFEVKLKVKKGKATKSYVFGKM 754
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.921 | 0.908 | 0.515 | 1.6e-198 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.913 | 0.908 | 0.511 | 4.7e-190 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.932 | 0.938 | 0.462 | 5.4e-173 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.949 | 0.911 | 0.459 | 6.9e-173 | |
| UNIPROTKB|Q0JK21 | 741 | Os01g0702300 "Os01g0702300 pro | 0.865 | 0.896 | 0.459 | 1e-148 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.897 | 0.908 | 0.410 | 7.4e-137 | |
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.797 | 0.773 | 0.413 | 5.2e-136 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.883 | 0.873 | 0.399 | 2.3e-135 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.928 | 0.925 | 0.381 | 2.5e-129 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.893 | 0.896 | 0.387 | 8.4e-129 |
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1922 (681.6 bits), Expect = 1.6e-198, P = 1.6e-198
Identities = 374/725 (51%), Positives = 492/725 (67%)
Query: 21 TPTSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRF 80
+P A KK Y+VYLGSH+H +S +D H FL SF+GS E A+ +IF+SY R
Sbjct: 33 SPAFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRH 92
Query: 81 INGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKAR 140
INGF A+L+E A ++ HP VVSVFP++G KLHTT SW+F+ L K+ + S W KA
Sbjct: 93 INGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAG 152
Query: 141 FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQG 200
+GED IIAN+D+GVWPESKSF+D+G G +P++WKG C D V CN+KLIG RY N+G
Sbjct: 153 YGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKD----VPCNRKLIGARYFNKG 208
Query: 201 TIEELRAKNPDAVIPQNLT--TGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGSP 258
+ +P N + T RD + NFVP +V+G G GTA GGSP
Sbjct: 209 YLAYTG-------LPSNASYETCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSP 261
Query: 259 KARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSF 318
KARVAAYKVCW P + C ADIL+A + AI DGVDV+SAS+G A +++ + IAIGSF
Sbjct: 262 KARVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIGSF 321
Query: 319 HAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVS 378
HA+ NG+ V +AGNSGP G+V NVAPW++TVGAS+ DREF ++V L N KG S+S
Sbjct: 322 HAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTSLS 381
Query: 379 QKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKG 437
+ L + Y LI ADA +AN + DA CKKGS+DP KV+GKIL+C G +KG
Sbjct: 382 KP--LPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDKG 439
Query: 438 QWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNS 497
AA AGA GM+L + K SGN++++ H LP + ++Y DGE++++Y++ST++P +
Sbjct: 440 MQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKAP 499
Query: 498 KTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP 557
NT+P+ MA F+SRGPN I P I KPD+TAPGV+IIAAFTEA+GP+ ++ RR P
Sbjct: 500 TATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTP 559
Query: 558 YIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
+ SGTSMSCPH++G+VGL+KTLHP WSPAAI+SAIMTT+R ++ +P++D++ +KA
Sbjct: 560 FNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESF-KKA 618
Query: 618 TPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNL 677
PF+YG+GHV PN A PGLVYDLT DYL ++C GYN + + LF ++TC + NL
Sbjct: 619 NPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGANL 678
Query: 678 ADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEE 737
DFNYPSI VP L G+IT TRK+KNVG +TY AR E GV VEP L F K GE
Sbjct: 679 LDFNYPSITVPNLTGSITVTRKLKNVGPP-ATYNARFREPLGVRVSVEPKQLTFNKTGEV 737
Query: 738 KTFKV 742
K F++
Sbjct: 738 KIFQM 742
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
Identities = 367/718 (51%), Positives = 476/718 (66%)
Query: 30 YVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLE 89
YVVY G+HSH T D +DR + H++FLGSF GS E A +IF+SY + INGF A L+
Sbjct: 32 YVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHLD 91
Query: 90 EEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIAN 149
+ A ++ HP VVSVFP++ KLHTTRSWDFLGLE ++++P S W+KARFGED IIAN
Sbjct: 92 HDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIAN 151
Query: 150 VDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKN 209
+D+GVWPESKSF D+G+GPIPS+WKGICQN CN+KLIG RY N+G + N
Sbjct: 152 LDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKLIGARYFNKGYAAAVGHLN 211
Query: 210 PDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCW 269
P RD + +FVP VS++G G GTAKGGSP+ARVAAYKVCW
Sbjct: 212 SSFDSP------RDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVCW 265
Query: 270 KPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVA 329
P + + C AD+L+A+D AIHDG DVIS SLG +++AIGSFHA IV V
Sbjct: 266 PPVKGNECYDADVLAAFDAAIHDGADVISVSLGGEPTSFFNDSVAIGSFHAAKKRIVVVC 325
Query: 330 AAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSY 389
+AGNSGP D +V NVAPW +TVGAST DREF S + LGN KG S+S L + Y
Sbjct: 326 SAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTALPH-AKFY 384
Query: 390 PLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD-EKGQWAAQAGAVGM 448
P++ +A+ N S +DA CK GS+DP K +GKIL+C + G EKG+ A G +GM
Sbjct: 385 PIMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLRGQNGRVEKGRAVALGGGIGM 444
Query: 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508
+L ++ +GN +L H LP L D +V YI+ T+ P A +T S+T+ +P+ +
Sbjct: 445 VLENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLGLKPAPV 504
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
MA F+S+GP+++ P I KPD+TAPGV +IAA+T A P+ ++ RR+ + +SGTSMSC
Sbjct: 505 MASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRLLFNAISGTSMSC 564
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN-TGEKATPFAYGAGHV 627
PH++GI GL+KT +P WSPAAI+SAIMTTA D PI QN T KATPF++GAGHV
Sbjct: 565 PHISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPI--QNATNMKATPFSFGAGHV 622
Query: 628 NPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTC--PKSFNLADFNYPSI 685
PN A++PGLVYDL +DYL ++C GYN S I +F+ FTC PK +L + NYPSI
Sbjct: 623 QPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSG-NNFTCSSPK-ISLVNLNYPSI 680
Query: 686 AVPKLNGT-ITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKV 742
VP L + +T +R VKNVG S Y + + GV V+P+ LNFTK GE+KTFKV
Sbjct: 681 TVPNLTSSKVTVSRTVKNVGRP-SMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKV 737
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 5.4e-173, P = 5.4e-173
Identities = 344/743 (46%), Positives = 469/743 (63%)
Query: 29 PYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVL 88
PY+VYLGSH +G + ++++ RA HH+ LGS LGS + A+ +I +SY + INGF A L
Sbjct: 18 PYIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHL 77
Query: 89 EEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIA 148
EEE A Q+ HP VV+V KLHTTRSWDF+ +E+D I PDS WK RFG+DVIIA
Sbjct: 78 EEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGRFGQDVIIA 137
Query: 149 NVDSGVWPESKSFADDGM-GPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRA 207
N+DSGVWPES SF D+ + G +P +WKG C + GVSCNKKLIG RY N+ ++
Sbjct: 138 NLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNK----DMLL 193
Query: 208 KNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGSPKARVAAYKV 267
NP AV + RD E FVP S++G GTAKGG+P+ARVAAYKV
Sbjct: 194 SNPGAV---DGNWSRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKV 250
Query: 268 CWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIA-----REHLKNTIAIGSFHAMM 322
CW + CA+AD+L+ ++ AIHDG DVIS S G A L+ + +GS HA M
Sbjct: 251 CW----SGECAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAM 306
Query: 323 NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGL 382
NG+ V +AGNSGP + +V N APW+ TV AST DR+F + VTLGN + G S+ +
Sbjct: 307 NGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSL-ETTT 365
Query: 383 LNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGD----EKGQ 438
L+ Y +I +DA +A+ AS C G++DP KV+ KI++C R GD KG
Sbjct: 366 LHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVC--VRGGDIPRVTKGM 423
Query: 439 WAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSK 498
AG GMIL + + G+ ++ H LP + Y++ S+Y Y++S++NP A+++ SK
Sbjct: 424 TVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSK 483
Query: 499 TEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPY 558
TE + S +A F+SRGP+ P + KPD+ APGVDI+AAFTE P+ +RR Y
Sbjct: 484 TEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEY 543
Query: 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618
++SGTSM+CPH++G++GL+K P+WSPAA++SAIMTTAR +D++ P+ D + G +AT
Sbjct: 544 AILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDHD-GREAT 602
Query: 619 PFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFN-L 677
FA+GAG+++PN A+DPGLVYDL+ EDY ++C G+N S + +A FTCP+ +
Sbjct: 603 AFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGN-FTCPEKVPPM 661
Query: 678 ADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEE 737
D NYPSI VP L T T R++K VG +TY+A GV+ VEP+ L F K GE
Sbjct: 662 EDLNYPSIVVPALRHTSTVARRLKCVGRP-ATYRATWRAPYGVNMTVEPAALEFGKDGEV 720
Query: 738 KTFKVAFSVKGDDKPTDYGFWRI 760
K FKV F + D Y F R+
Sbjct: 721 KEFKVTFKSEKDKLGKGYVFGRL 743
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
Identities = 346/753 (45%), Positives = 455/753 (60%)
Query: 27 KKPYVVYLGSHSHGSN---PTSDDID------RARIRHHEFLGSFLGSVEEAESSIFHSY 77
K+ YVVYLG H+HG + D+D +A H E L LG E+A +IF+SY
Sbjct: 37 KQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAREAIFYSY 96
Query: 78 GRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWK 137
R INGF A L+ A ++ PGVVSVFP+ G KLHTTRSW FLGL P +AWK
Sbjct: 97 TRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAPTGAAWK 156
Query: 138 KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYI 197
KARFGED II N+D+GVWPES+SF DDG+GPIPS W+G CQ SCN+KLIG R+
Sbjct: 157 KARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKLIGARFF 216
Query: 198 NQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGS 257
N+G + N T RD + V SV+G G GTA GGS
Sbjct: 217 NKGYASAVGNLNTSL-----FDTPRDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGGS 271
Query: 258 PKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGS 317
P ARVAAY+VC+ P C ADIL+A+D AIHDGV V+S SLG A ++ + +AIGS
Sbjct: 272 PMARVAAYRVCYTPVNGSECFDADILAAFDAAIHDGVHVLSVSLGGDAGDYFADGLAIGS 331
Query: 318 FHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377
FHA+ +GI V +AGNSGP G+V NVAPW+ T AST DREF +YV N +KG S+
Sbjct: 332 FHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDREFPAYVVF-NDTKLKGQSL 390
Query: 378 SQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEK 436
S L S+P+I + A N ++ ++ C GS+DP KV+GKI++C G EK
Sbjct: 391 SASALSPASSSFPMIDSSLAASPNRTQNESQLCFLGSLDPEKVKGKIVVCLRGVNPRVEK 450
Query: 437 GQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTN 496
G+ +AG GM+L + +GN+++ H LP H+ ++DG+ +++Y+ +T++P ++T
Sbjct: 451 GEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSDGQILFSYLKNTKSPAGTITR 510
Query: 497 SKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRI 556
+T T+P+ MA F+S+GPN + P I KPD+TAPGV ++AA+T AS P+ KRR+
Sbjct: 511 PETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSVVAAWTRASAPTDLAFDKRRV 570
Query: 557 PYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEK 616
+ SGTSMSCPHVAG+VGL++TL PDWSPAAI+SA+MTTA D+ IL+ +
Sbjct: 571 AFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVDNERHAILNSSFAA- 629
Query: 617 ATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTA---PKKFTCPK 673
A PF +GAGHV+P A++PGLVYDL DYL ++C YN + + +F F CP
Sbjct: 630 ANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNATVMAMFAGGGGAAPFRCPA 689
Query: 674 SF-NLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFT 732
S + D NYPSI V L + T R VKNVG YKA + GV V P L F
Sbjct: 690 SPPKVQDLNYPSITVVNLTSSATVRRTVKNVGKPG-VYKAYVTSPAGVRVTVSPDTLPFL 748
Query: 733 KYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
GE+KTF+V F V DY F G + W
Sbjct: 749 LKGEKKTFQVRFEVTNASLAMDYSF---GALVW 778
|
|
| UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
Identities = 318/692 (45%), Positives = 416/692 (60%)
Query: 88 LEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKA-RFGEDVI 146
++E ++ PGV++V PD K+HTTRSWDFL LE++ AWK A ++G D I
Sbjct: 39 IDESFVGVIKQLPGVLAVIPDVLHKVHTTRSWDFLELERNG--AATGAWKDAAKYGVDAI 96
Query: 147 IANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEE-- 204
I NVD+GVWPES SF DDG +PS+W+G C N CN KLIG + N G +
Sbjct: 97 IGNVDTGVWPESASFKDDGYS-VPSRWRGKCITGNDTTFKCNNKLIGAGFFNLGFLASGL 155
Query: 205 LRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGSPKARVAA 264
L+ K P L T RD FVP+ SV+G G GTAKGGSP ARVAA
Sbjct: 156 LQGKPPSQAA--ELYTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAA 213
Query: 265 YKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNG 324
YK C+ + C+S+DIL+A A+ DGV+V+S S+G A ++L + IAIG+F+A+ G
Sbjct: 214 YKACYA----EGCSSSDILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFYAVQKG 269
Query: 325 IVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLG---NKMVIKGASVSQKG 381
++ V +A NSGP GSV NVAPWILTVGAST DR+F +YVT G + M IKG S+S
Sbjct: 270 VIVVCSASNSGPQPGSVTNVAPWILTVGASTMDRDFPAYVTFGGVTSSMTIKGQSLSNST 329
Query: 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY-GARYGDEKGQWA 440
L Y +I +A ANV +++ C GS+D KV+GKI++C G EKG
Sbjct: 330 LPQG-QRYAMINAKNANAANVPSENSTLCFPGSLDSDKVRGKIVVCTRGVNARVEKGLVV 388
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500
QAG VGM+L + +G V+ H + AH++Y+ +++ Y+ ST NP +T S
Sbjct: 389 KQAGGVGMVLCNYAGNGEDVIADPHLIAAAHVSYSQCINLFNYLGSTDNPVGYITASDAR 448
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIM 560
+P+ +MA F+SRGPN I P I KPD+TAPGV +IAA++EA P+ RR+PY +
Sbjct: 449 LGVKPAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRVPYNI 508
Query: 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620
MSGTSMSCPHV+GIVGL+KT +PDW+PA IKSAIMTTA D+ + I D+ TG ATPF
Sbjct: 509 MSGTSMSCPHVSGIVGLIKTKYPDWTPAMIKSAIMTTAITGDNDSGKIRDE-TGAAATPF 567
Query: 621 AYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDL--FTAP-KKFTCPKSFNL 677
AYG+GHV ALDPGLVYD T DY ++C Q+ + L F K C +
Sbjct: 568 AYGSGHVRSVQALDPGLVYDTTSADYADFLCALRPTQNPLPLPVFGDDGKPRACSQGAQY 627
Query: 678 A---DFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSE-ITGVSTIVEPSILNFTK 733
D NYPSIAVP L+G+ T R+VKNVGAA Y +E + GV V P L+F
Sbjct: 628 GRPEDLNYPSIAVPCLSGSATVRRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFES 687
Query: 734 YGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
YGEE+ F V V+ +Y F G + W
Sbjct: 688 YGEEREFTVRLEVQDAAAAANYVF---GSIEW 716
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
Identities = 294/717 (41%), Positives = 429/717 (59%)
Query: 55 HHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLH 114
H + S L S+ ++ + + ++Y I+GF L +E A L PGV+SV P+ +LH
Sbjct: 48 HSNWYDSSLRSISDS-AELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
TTR+ FLGL++ + +A DV++ +D+GVWPESKS++D+G GPIPS WK
Sbjct: 107 TTRTPLFLGLDEHTA----DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWK 162
Query: 175 GICQ-NDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXX 233
G C+ N+ CN+KLIG R+ +G E ++ + + RD++
Sbjct: 163 GGCEAGTNFTASLCNRKLIGARFFARG-YESTMGPIDES---KESRSPRDDDGHGTHTSS 218
Query: 234 XXXXNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293
+ V S+ G GTA+G +P+ARVA YKVCW C S+DIL+A D AI D
Sbjct: 219 TAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWL----GGCFSSDILAAIDKAIADN 274
Query: 294 VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
V+V+S SLG ++ ++ +AIG+F AM GI+ +AGN+GP S+ NVAPWI TVGA
Sbjct: 275 VNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGA 334
Query: 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKG 413
T DR+F + LGN G S+ + L D P I +A +N + + + C G
Sbjct: 335 GTLDRDFPALAILGNGKNFTGVSLFKGEALPD-KLLPFIYAGNA--SNAT--NGNLCMTG 389
Query: 414 SIDPAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHL 472
++ P KV+GKI++C G +KG AG VGMIL ++ +G +++ H LP +
Sbjct: 390 TLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTV 449
Query: 473 NYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532
G+ + Y+ + NPTAS++ T +PS ++A F+SRGPN I P I KPD+ AP
Sbjct: 450 GEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAP 509
Query: 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592
GV+I+AA+T A+GP+ + RR+ + ++SGTSMSCPHV+G+ L+K++HP+WSPAAI+S
Sbjct: 510 GVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRS 569
Query: 593 AIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICD 652
A+MTTA +P+LD TG+ +TPF +GAGHV+P +A +PGL+YDLT EDYLG++C
Sbjct: 570 ALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCA 629
Query: 653 RGYNQSTIDLFTAPKKFTC-P-KSFNLADFNYPSIAVPKLN-GTITFTRKVKNVGAANST 709
Y I + + +TC P KS+++AD NYPS AV G +TR V +VG A T
Sbjct: 630 LNYTSPQIRSVSR-RNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAG-T 687
Query: 710 YKAR-TSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
Y + TSE TGV VEP++LNF + E+K++ V F+V KP+ G G + W
Sbjct: 688 YSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSS-KPS--GSNSFGSIEW 741
|
|
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 5.2e-136, Sum P(2) = 5.2e-136
Identities = 268/648 (41%), Positives = 369/648 (56%)
Query: 137 KKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQND-NYKGVSCNKKLIGIR 195
KKA+ G+ +I+ +DSGVWPESKSF D GMGP+P WKGICQ + CN+K+IG R
Sbjct: 146 KKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSHCNRKIIGAR 205
Query: 196 YINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGS-GYGTAK 254
Y +G A N A ++ + RD + V S G G+A
Sbjct: 206 YYVKGYERYYGAFN--ATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGGFAKGSAS 263
Query: 255 GGSPKARVAAYKVCW-KPN----ENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EH 308
GG+P AR+A YK CW KPN E + C D+L+A D AI DGV VIS S+G+
Sbjct: 264 GGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIGTTEPFPF 323
Query: 309 LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGN 368
++ IA+G+ HA+ IV A+AGNSGP G++ N+APWI+TVGAST DR F + LGN
Sbjct: 324 TQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFVGGLVLGN 383
Query: 369 KMVIKGASVSQKGLLNDLDSY-PLIGGADARIANVSEIDASECKKGSIDPAKVQGKILIC 427
IK S++ +D + PL+ ++ + ++ + S+C S+ P V GK+++C
Sbjct: 384 GYTIKTDSITAF----KMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKVVLC 439
Query: 428 Y---GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYI 484
G+R G KG +AG GMIL + +GN+V + H +PTA + T + + YI
Sbjct: 440 LRGAGSRIG--KGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEYI 497
Query: 485 NSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEAS 544
+ +NP A + KT + + + M F+SRGPN++DP I KPD+TAPG+ I+AA++ A
Sbjct: 498 KTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGAD 557
Query: 545 GPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSS 604
PS +R Y + SGTSMSCPHVAG + L+K +HP WS AAI+SA+MTTA +
Sbjct: 558 SPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTNDK 617
Query: 605 NRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTID-LF 663
+PI D TG A PFA G+GH P A DPGLVYD ++ YL Y C N + ID F
Sbjct: 618 KKPIQD-TTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCS--VNITNIDPTF 674
Query: 664 TAPKKFTCPKSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAANST--YKARTSEITGVS 721
P K P +N NYPSIAVP L T+T R V NVG NST Y +G+S
Sbjct: 675 KCPSKI--PPGYN---HNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGIS 729
Query: 722 TIVEPSILNFTKYGEEKTFKVAFS-VKGDD-KPTDYGFWRIGLVRWFS 767
P+IL+F + G+++ FK+ +K T+ G ++ G WFS
Sbjct: 730 VKAIPNILSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFG---WFS 774
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| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 283/709 (39%), Positives = 421/709 (59%)
Query: 67 EEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEK 126
++A + I ++Y +GF A L+EE A+ + GV++V P+ +LHTTRS DFLG+
Sbjct: 71 DDASTRIIYNYETAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGP 130
Query: 127 DNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGV 185
+ + W + DV++ +D+G+WPES SF+D G+GP+P+KWKG+CQ +
Sbjct: 131 E---VSNRIWSDSLADHDVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTA 187
Query: 186 SCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSV 245
+CN+K++G R G A + L + RD++ + V + ++
Sbjct: 188 NCNRKIVGARIFYNG----YEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANL 243
Query: 246 YGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIA 305
YG G A+G +P+ARVAAYKVCW C S+DIL+A D A+ DGVDV+S SLG A
Sbjct: 244 YGYAGGVARGMAPRARVAAYKVCWA----GGCFSSDILAAVDRAVSDGVDVLSISLGGGA 299
Query: 306 REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVT 365
+ ++++I SF AM G+ +AGN+GPD S+ N++PWI TVGAST DR+F + VT
Sbjct: 300 SRYYLDSLSIASFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVT 359
Query: 366 LGNKMVIKGASVSQKGL--LNDLDSYPLI--GGADARIANVSEIDA-SECKKGSIDPAKV 420
LGN I G S+ KGL L+ + YP++ GG N S D S C +G++ P V
Sbjct: 360 LGNGANITGVSL-YKGLRNLSPQEQYPVVYLGG------NSSMPDPRSLCLEGTLQPHDV 412
Query: 421 QGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGES 479
GKI+IC G +KGQ +AG +GMIL ++ +G +++ H LP + +G +
Sbjct: 413 SGKIVICDRGISPRVQKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIA 472
Query: 480 VYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAA 539
+Y S PTA+++ T+ RPS ++A F+SRGPN++ I KPDV APGV+I+AA
Sbjct: 473 AKSYSKSAPKPTATLSFGGTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAA 532
Query: 540 FTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
++ + PS + RR+ + ++SGTSMSCPHVAG+ L+K HPDWSPA IKSA+MTTA
Sbjct: 533 WSGDASPSSLSSDSRRVGFNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAY 592
Query: 600 AEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQST 659
D++ RP+ D TG+ +TPF +GAGH++P AL PGLVYD+ DYL ++C +
Sbjct: 593 VHDNTYRPMKDAATGKASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQ 652
Query: 660 IDLFTAPKKFTCPKSFNLA-DFNYPSIAV---PKLNGTITFTRKVKNVGAANSTYKARTS 715
+ FT TC +F+ A D NYP+I+V + + +T R V NVG +STY + +
Sbjct: 653 LRTFTKNSNMTCRHTFSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPPSSTYHVKVT 712
Query: 716 EITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGF--WRIGL 762
+ G IVEP+ L+F ++ ++KV + K K ++G W G+
Sbjct: 713 KFKGADVIVEPNTLHFVSTNQKLSYKVTVTTKAAQKAPEFGALSWSDGV 761
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| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 289/757 (38%), Positives = 416/757 (54%)
Query: 23 TSAAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFIN 82
+S+ Y+VY+G HG P + + A HH L + LGS + A +I +SY +
Sbjct: 20 SSSRSNVYIVYMGERHHGLRP--ELVQEA---HHGMLAAVLGSEQAAMDAILYSYRHGFS 74
Query: 83 GFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSA-WKKARF 141
GF AVL A +L + PGVV V + LHTTRSWDF+G+ N P ++RF
Sbjct: 75 GFAAVLTGGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGV---NPSPSGGGILLESRF 131
Query: 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGIC-QNDNYKGVSCNKKLIGIRYINQG 200
GED II +D+G+WPES SF DDG+G +P +WKG C + + +CN+K+IG ++ +G
Sbjct: 132 GEDSIIGVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKG 191
Query: 201 TIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPNVSVYGSGYGTAKGGSPKA 260
E N + + RD V N S G G A+GG+ +A
Sbjct: 192 YEAEYGKMNTSDIY--EFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRA 249
Query: 261 RVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR--EHLKNTIAIGSF 318
R+A YKVCW + C +ADIL+A+D AIHDGVDVIS SLG ++ + ++IGSF
Sbjct: 250 RLAVYKVCWATGD---CTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVLSIGSF 306
Query: 319 HAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVS 378
HA+ G+V V +AGNSGP +V N APWI+TV A T DR F + + LGN G ++
Sbjct: 307 HAVAKGVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTL- 365
Query: 379 QKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKG- 437
G + S ++ D N + DA C GS++ V+G +++C+ R
Sbjct: 366 YSGK-HPSKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASV 424
Query: 438 --QWAAQAGAVGMILVS--SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTAS 493
+ +A VG+I +K+ + + +P ++Y G ++ AY S +NP A
Sbjct: 425 AVETVKKARGVGVIFAQFLTKDIASSL-----DIPCVQVDYQVGTAILAYTTSMRNPVAQ 479
Query: 494 MTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHK 553
+ KT + +A+F+SRGP+ + P+I KPD+ APGV+I+AA++ A+ S +
Sbjct: 480 FSFPKTIVGELVAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAIS---SAI 536
Query: 554 RRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNT 613
+ + + SGTSMSCPH++G+V L+K++HP+WSPAA+KSA++TTA D+ ++ +
Sbjct: 537 GSVNFKIDSGTSMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAA 596
Query: 614 G-EKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTC- 671
A PF YG GHVNPN A PGLVYD+ DY+ ++C GYN S I T ++ TC
Sbjct: 597 PYNDANPFDYGGGHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQ-QQTTCQ 655
Query: 672 --PKS-FNLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSI 728
PKS NL N PSI +P+L G +T +R V NVG A S Y+AR GV V PS+
Sbjct: 656 HTPKSQLNL---NVPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSL 712
Query: 729 LNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRW 765
L F + FKV F K K G + G + W
Sbjct: 713 LTFNSTVRKLPFKVTFQAKLKVK----GRYTFGSLTW 745
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| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 277/714 (38%), Positives = 411/714 (57%)
Query: 65 SVEEAESS-IFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLG 123
S E AE S I H Y +GF AV+ + A L NHP V++VF D +LHTTRS FLG
Sbjct: 49 STEFAEESRIVHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLG 108
Query: 124 LEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQND-NY 182
L+ + W ++ +G DVII D+G+WPE +SF+D +GPIP +W+G+C++ +
Sbjct: 109 LQNQKGL-----WSESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARF 163
Query: 183 KGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEXXXXXXXXXXXXNFVPN 242
+CN+K+IG R+ +G + V + RD +
Sbjct: 164 SPRNCNRKIIGARFFAKGQQAAVIGGINKTV---EFLSPRDADGHGTHTSSTAAGRHAFK 220
Query: 243 VSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLG 302
S+ G G AKG +PKAR+AAYKVCWK + C +DIL+A+D A+ DGVDVIS S+G
Sbjct: 221 ASMSGYASGVAKGVAPKARIAAYKVCWK---DSGCLDSDILAAFDAAVRDGVDVISISIG 277
Query: 303 S---IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDRE 359
I + + IAIGS+ A GI ++AGN GP+ SV N+APW+ TVGAST DR
Sbjct: 278 GGDGITSPYYLDPIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRN 337
Query: 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAK 419
F + LG+ ++G S+ LN +P++ + +++ AS C + ++DP +
Sbjct: 338 FPADAILGDGHRLRGVSLYAGVPLNGR-MFPVVYPGKSGMSS-----ASLCMENTLDPKQ 391
Query: 420 VQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGE 478
V+GKI+IC G+ KG +AG VGMIL + +G ++ H +P + +G+
Sbjct: 392 VRGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGASNGEGLVGDAHLIPACAVGSNEGD 451
Query: 479 SVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIA 538
+ AY +S NP AS+ T +P+ ++A F+ RGPN + P I KPD+ APGV+I+A
Sbjct: 452 RIKAYASSHPNPIASIDFRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILA 511
Query: 539 AFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
A+T+A GP+ + R+ + ++SGTSM+CPHV+G L+K+ HPDWSPA I+SA+MTT
Sbjct: 512 AWTDAVGPTGLPSDPRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTT 571
Query: 599 RAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQS 658
D+SNR ++D++TG+ ATP+ YG+GH+N A++PGLVYD+T +DY+ ++C GY
Sbjct: 572 NLVDNSNRSLIDESTGKSATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPK 631
Query: 659 TIDLFT-APKKFTCPKSFNLADFNYPSI-AVPKLN--GTITFT--RKVKNVGAANSTYKA 712
TI + T P + + + + NYPSI AV N G ++ T R NVG A + Y+A
Sbjct: 632 TIQVITRTPVRCPTTRKPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRA 691
Query: 713 RTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRWF 766
R GV+ V+P L FT + +++ V +V + G V WF
Sbjct: 692 RIESPRGVTVTVKPPRLVFTSAVKRRSYAVTVTVNTRNVVLGETGAVFGSVTWF 745
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01400040 | hypothetical protein (775 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 767 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-99 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-31 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 8e-28 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-26 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 7e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-18 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-16 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 6e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 4e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-11 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 8e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 4e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-09 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 5e-08 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 8e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 7e-07 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 8e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-06 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 4e-06 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 6e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 7e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 8e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 1e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 5e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 6e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 1e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 0.001 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 0.002 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 0.002 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 0.002 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 1e-99
Identities = 115/245 (46%), Positives = 143/245 (58%), Gaps = 12/245 (4%)
Query: 112 KLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPS 171
+LHTTRS DFLGL S A GE +II +D+G+WPE SFAD G GP P
Sbjct: 2 QLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPH 58
Query: 172 KWKGICQ-NDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH 230
W G C +++ SCN KLIG RY + G + RD +GHGTH
Sbjct: 59 TWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDA-----YGGFNSDGEYRSPRDYDGHGTH 113
Query: 231 TLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290
T +TA GN V N SV G +GTA G +P+AR+A YKVCW + C +DIL+A D AI
Sbjct: 114 TASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW---PDGGCFGSDILAAIDQAI 170
Query: 291 HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILT 350
DGVDVIS S+G + + ++ IAI HA+ GI A+AGNSGP +V NVAPW+ T
Sbjct: 171 ADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTT 230
Query: 351 VGAST 355
V AST
Sbjct: 231 VAAST 235
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDW 585
KPD+ APGVDI+AA+T D R + +SGTSM+ PHVAG+ L+K+ HPDW
Sbjct: 237 KPDIAAPGVDILAAWTPEGADPGD---ARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 586 SPAAIKSAIMTTA 598
SPAAIKSA+MTTA
Sbjct: 294 SPAAIKSALMTTA 306
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-28
Identities = 55/133 (41%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQG 422
VTLGN I G S+ +L +YPL+ + AN ++DAS C GS+DP+KV+G
Sbjct: 1 VVTLGNGKTIVGQSLYP----GNLKTYPLVYKS----ANSGDVDASLCLPGSLDPSKVKG 52
Query: 423 KILICY--GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESV 480
KI++C G KG AG GMIL + G V+ H LP H++Y DG ++
Sbjct: 53 KIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAI 112
Query: 481 YAYINSTQNPTAS 493
+YINST NPTA+
Sbjct: 113 LSYINSTSNPTAT 125
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 55/141 (39%), Positives = 69/141 (48%), Gaps = 25/141 (17%)
Query: 492 ASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDET 551
AS E +T +SRGP D AI KPD+ APGVDI++ +
Sbjct: 180 ASTVADVAEADTV-----GPSSSRGPPTSDSAI-KPDIVAPGVDIMSTAPGSGTG----- 228
Query: 552 HKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQ 611
Y MSGTSM+ PHVAG L+K HPDWSPA IK+A+M TA +P+ D
Sbjct: 229 ------YARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTA-------KPLYDS 275
Query: 612 NTGEKATPFAYGAGHVNPNSA 632
+ G GAG V+ A
Sbjct: 276 D-GVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 7e-23
Identities = 70/218 (32%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGT 201
G+ V +A +D+G+ D P ND KG G ++
Sbjct: 1 GKGVKVAVIDTGI---------DYTHPDLGGPGF--PNDKVKG--------GYDFV--DD 39
Query: 202 IEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKAR 261
+ P P + D GHGTH GN G GT KG +PKA
Sbjct: 40 DYDPMDTRPY-PSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKAD 90
Query: 262 VAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHA 320
+ AYKV S + I++A + A+ DG+DVI+ SLGS + IAI + A
Sbjct: 91 LYAYKVL---GPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--A 145
Query: 321 MMNGIVSVAAAGNSGPDDGSVEN--VAPWILTVGASTT 356
+ G+V VAAAGNSGP ++ + AP +TVGAST
Sbjct: 146 VKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 502 NTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMM 561
N +++F+SRGP KPDV APG +I++ + P Y M
Sbjct: 173 NGPHDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGS----GYFEM 226
Query: 562 SGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
SGTSM+ PHV+G + L+ +P +P +K + TA
Sbjct: 227 SGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 6e-16
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 438 QWAAQAGA--VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMT 495
+WA + A V M L + S + + V L N T V + N + S
Sbjct: 92 EWAVEKDADVVSMSLGGTYYSEDPLEEAVEAL----SNQTGALFVVSAGNEGHGTSGSPG 147
Query: 496 NSKTEFN---TRPSRMMAFFTSRG---------PNMIDPAIFKPDVTAPGVDIIAAFTEA 543
++ + A+F+S G P+ KPDV APGVD+ +A
Sbjct: 148 SAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA---R 204
Query: 544 SGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
G + D + R +SGTSM+ PHVAG+ L+ HPD SP IK A+ TA
Sbjct: 205 QGANGDGQYTR------LSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 6e-15
Identities = 51/225 (22%), Positives = 72/225 (32%), Gaps = 57/225 (25%)
Query: 145 VIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEE 204
V +A +D+GV P+ +
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLF----------GGGDGGNDDDDNEN--------------- 35
Query: 205 LRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAA 264
T D GHGTH + V G +P A++
Sbjct: 36 ------------GPTDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIP 74
Query: 265 YKVCWKPNENDSCASADILSAYDLAIHD-GVDVISASLGSIAREHLKNTIAIGSFHAMM- 322
KV + S +S+DI +A D A D G DVI+ SLG +
Sbjct: 75 VKVLDG---DGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEA--IDYALA 129
Query: 323 -NGIVSVAAAGNSGPDDGSVEN---VAPWILTVGASTTDREFTSY 363
G++ VAAAGN GPD G+ +P ++ VGA D S
Sbjct: 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASP 174
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN 274
TT D+ GHGTH G+ + G KG +P A + KV +++
Sbjct: 34 VNGRTTPYDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVGVKVL---DDS 83
Query: 275 DSCASADILSA----YDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMM----NGIV 326
S + +DI++ + + V++ SLG+ A+ GIV
Sbjct: 84 GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC---QAVERLWDAGIV 140
Query: 327 SVAAAGNSGPDDGSVEN--VAPWILTVGASTTDREFTSYVT 365
V AAGNSGP G++ + +P ++TVGA + ++
Sbjct: 141 VVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGIS 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
+A F++ G + KPD+ APG +I+ S Y SGTSM+
Sbjct: 177 IADFSNYGGPVDGI---KPDIVAPGGNIL--------SSGPGGDLGG--YDSHSGTSMAA 223
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVN 628
P VAG L+ + +P +P +++ ++TTA + G ++G G +N
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTA------------TDLGSMGLDRSFGYGLLN 271
Query: 629 PNSALD 634
A+
Sbjct: 272 LGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 36/210 (17%)
Query: 429 GARYGDEKGQWAAQ-AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINST 487
G D+ Q A + A G+++V + +GN + N D +V + +T
Sbjct: 157 GFVDLDDPEQQAIKRAREAGVVVVVA--AGNDGNSGSGTSKPLATNNPDTGTVGS--PAT 212
Query: 488 QNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPS 547
+ ++ ++ + M+ F+S GP D KPD+TAPG +I +
Sbjct: 213 ADDVLTVASANKKVPNPNGGQMSGFSSWGP-TPDLD-LKPDITAPGGNIYSTV------- 263
Query: 548 PDETHKRRIPYIMMSGTSMSCPHVAGIVGLV----KTLHPDWSPA----AIKSAIMTTAR 599
D T Y MSGTSM+ PHVAG LV K +P S +K+ +M TA
Sbjct: 264 NDNT------YGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA- 316
Query: 600 AEDSSNRPILDQN-TGEKATPFAYGAGHVN 628
P LD T +P GAG ++
Sbjct: 317 ------TPPLDSEDTKTYYSPRRQGAGLID 340
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 486 STQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASG 545
++ NP+ S + + A F+SRGP KPD+ APG I++A + G
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTV-ASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGG 235
Query: 546 PSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLV----------KTLHPDWSPAAIKSAIM 595
Y SGTSM+ P VAG L+ +P S A +K+ ++
Sbjct: 236 IGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLI 289
Query: 596 TTAR 599
+AR
Sbjct: 290 NSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH +G G G +P+A + A KV N++ S +DI
Sbjct: 38 DGNGHGTHVAGIIAA--------LDNGVGVV-GVAPEADLYAVKVL---NDDGSGTYSDI 85
Query: 283 LSAYDLAIHDGVDVISASLG-SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341
++ + AI +G+D+I+ SLG L+ AI +A GI+ VAAAGNSG D S
Sbjct: 86 IAGIEWAIENGMDIINMSLGGPSDSPALRE--AIKKAYA--AGILVVAAAGNSGNGDSSY 141
Query: 342 ENVA--PWILTVGASTTDREFTSY 363
+ A P ++ VGA ++ S+
Sbjct: 142 DYPAKYPSVIAVGAVDSNNNRASF 165
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDW 585
D+ APG DI+++ T G Y +SGTSM+ P VAG+ L+ + +PD
Sbjct: 181 GVDIAAPGGDILSSPTTGGGG-----------YATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 586 SPAAIKSAIMTT 597
+PA +K+A+++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-12
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 30 YVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLE 89
Y+V + S H + S E A +SI +SY NGF A L
Sbjct: 2 YIVKFKDGVSKAAVFSS--------HKSWHASSKE--EAAGASILYSYKHGFNGFAAKLT 51
Query: 90 EEHAKQLENHPGVVSVFPDEGAKLH 114
EE A++L HP V V PD+ +LH
Sbjct: 52 EEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGVDI+ S Y MSGTSM+ PHVAG L+ +L+P+ +
Sbjct: 201 DLAAPGVDIL------STSPGG-------GYGYMSGTSMATPHVAGAAALLLSLNPNLTA 247
Query: 588 AAIKSAIMTTAR 599
A IK AI+++A
Sbjct: 248 AQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 512 FTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHV 571
F+S GP + KPDV APG +I++ + A G Y ++SGTSM+ P+V
Sbjct: 191 FSSWGPT--NELYLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTSMATPYV 237
Query: 572 AGIVGLVKTL-HPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPN 630
AG L+ H SPA ++ + +TA+ S+ + A GAG VN
Sbjct: 238 AGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD---GTSALPDLAPVAQQGAGLVNAY 294
Query: 631 SALD 634
AL
Sbjct: 295 KALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 30/166 (18%)
Query: 200 GTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPK 259
G + + + + I GHGTH T GG G G G +P+
Sbjct: 20 GRVAQWADFDENRRISATEVFDAG--GHGTHVSGTIGG---------GGAKGVYIGVAPE 68
Query: 260 ARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFH 319
A + KV ++ + + I++ + A+ DV+S SLG
Sbjct: 69 ADLLHGKVL----DDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-------EDPLE 117
Query: 320 AMMN------GIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDRE 359
+ G + V +AGN G A L+VGA DR+
Sbjct: 118 EAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 510 AFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCP 569
A F+S GP ++ APGVDI++ + P+ Y +SGTSM+ P
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY-------PNND------YAYLSGTSMATP 201
Query: 570 HVAGIVGLVKTLHPDWSPAAIKSAIMTT 597
HVAG+ LV + P+ + A ++ A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 21/150 (14%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH G +P A++ + KV DS + I
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGGV--------GVAPNAKLESVKVLPGSGGTDSELAGAI 94
Query: 283 LSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVS-----VAAAGNSGPD 337
+ + + VI+ SLG + + AI +NG + V AAGN G
Sbjct: 95 --EWAAERPNDIRVINMSLGPVDGPPSSWSSAI--DELAVNGADNKGSLFVVAAGNGGDY 150
Query: 338 DGSVEN----VAPWILTVGASTTDREFTSY 363
+ A I+TVGA T + +
Sbjct: 151 ADNNPVSDPASANNIITVGAVTENGTIADF 180
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
+A F+ RGP KPD+ APGV+I+ SP Y SGTS++
Sbjct: 359 IAIFSGRGPTRDG--RIKPDIAAPGVNIL-------TASPGGG------YTTRSGTSVAA 403
Query: 569 PHVAGIV------GLVKTLHPDWSPAAIKSAIMTTAR 599
VAG G+V+ P IK+ ++ AR
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APGVDI++A S T +SGTSM+ PHVAG+ + +L PD SP
Sbjct: 194 DIFAPGVDILSA----WIGSDTAT-------ATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 588 AAIKSAIMTTA 598
A +K+ ++ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 45/146 (30%), Positives = 58/146 (39%), Gaps = 37/146 (25%)
Query: 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASA 280
D GHGTH T G G YG AK KA + A KV + N S +
Sbjct: 59 DSDCNGHGTHVAGTVG----------GKTYGVAK----KANLVAVKVL---DCNGSGTLS 101
Query: 281 DILSAYDLAIHDGVD-----VISASLGSIAREHLKNTIAIGSFHAMMN-GIVSVAAAGNS 334
I++ + +D V + SLG A L +A A +N G+V V AAGNS
Sbjct: 102 GIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA-----AAVNAGVVVVVAAGNS 156
Query: 335 GPDD-----GSVENVAPWILTVGAST 355
D S +TVGA+
Sbjct: 157 NQDACNYSPASAPEA----ITVGATD 178
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 502 NTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMM 561
T + ++A F+SRGP+ KPD++APGV+I +A Y
Sbjct: 180 ATDRNDVLADFSSRGPSTYGRI--KPDISAPGVNIRSAVPGGG-------------YGSS 224
Query: 562 SGTSMSCPHVAGIVGLVKTLHP 583
SGTSM+ PHVAG+ L+ + +P
Sbjct: 225 SGTSMAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
T A F++ G + DV+APG I++ PD Y MS
Sbjct: 183 TDQDDKRASFSNYGKWV--------DVSAPGGGILSTT-------PDGD------YAYMS 221
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
GTSM+ PHVAG+ L+ + P S + ++ A+ TA
Sbjct: 222 GTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTAD 257
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 223 DEEGHGTH---TLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCAS 279
D+ GHGTH + G N G G A G + ++ K + S +
Sbjct: 61 DDNGHGTHVAGIIGAVGNN----------GIGIA-GVAWNVKIMPLKFL---GADGSGTT 106
Query: 280 ADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPD-D 338
+D + A D A+ G +I+ S G AI A+ GI+ VAAAGN G + D
Sbjct: 107 SDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD-AIA--RAIDAGILFVAAAGNDGTNND 163
Query: 339 GSVENVA----PWILTVGAST-TDR--EFTSY 363
+ A I++V A+ D F++Y
Sbjct: 164 KTPTYPASYDLDNIISVAATDSNDALASFSNY 195
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 62/240 (25%), Positives = 81/240 (33%), Gaps = 65/240 (27%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
AW G V +A VD+GV P
Sbjct: 19 PKAWDITG-GSGVTVAVVDTGVDPTHPDLLKV---------------------------- 49
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH---TLATAGGNFVPNVSVYGSG 249
D V N + D+ GHGTH +A A N G
Sbjct: 50 ------------KFVLGYDFV--DNDSDAMDDNGHGTHVAGIIAAATNN----------G 85
Query: 250 YGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIA-REH 308
G A G +PKA++ KV + N S + ADI + A G VI+ SLG
Sbjct: 86 TGVA-GVAPKAKIMPVKVL---DANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTA 141
Query: 309 LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGN 368
L+ I +A G+V VAAAGN G S P + V A+ D + S+ G
Sbjct: 142 LQEAIN----YAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNYGK 197
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 65/244 (26%), Positives = 90/244 (36%), Gaps = 43/244 (17%)
Query: 135 AWKKARF-GEDVIIANVDSGVWPESKSFA-DDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
W K + GE +++A +DSGV P +F DD SK K + + K +
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDD-----DSKAKYSEEFEAKKK---KAGIG 53
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDE-------EGHGTHTLATAGGNFVPNVSV 245
+Y N+ K P A N D+ HG H GN +
Sbjct: 54 YGKYYNE--------KVPFAY---NYADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNG 102
Query: 246 YGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIA 305
G KG +P+A++ A KV P S A + A+ G DVI+ SLGS A
Sbjct: 103 EG-----IKGVAPEAQLLAMKVFSNPE-GGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156
Query: 306 ---REHLKNTIAIGSFHAMMNGIVSVAAAGNSG----PDDGSVENVAPWILTVGASTTDR 358
AI G+V V AAGN G + P TVG+ T
Sbjct: 157 GFVDLDDPEQQAIKRARE--AGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214
Query: 359 EFTS 362
+ +
Sbjct: 215 DVLT 218
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 26/110 (23%)
Query: 526 KPDVTAP-GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD 584
KPDVTAP GV+ + GP GTS + PH AG+ LV + +P
Sbjct: 190 KPDVTAPDGVNGTVD-GDGDGPPN------------FFGTSAAAPHAAGVAALVLSANPG 236
Query: 585 WSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
+PA I+ A+ +TA + GE A G+G V+ + A+
Sbjct: 237 LTPADIRDALRSTA------------LDMGEPGYDNASGSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 29/187 (15%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D+ GHGT N G KG +P + +Y+V S S+ I
Sbjct: 51 DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVF---GSCGSAESSWI 95
Query: 283 LSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMM--------NGIVSVAAAGNS 334
+ A A DGVDVI+ SLG + ++A G + VAAAGN
Sbjct: 96 IKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGND 155
Query: 335 GPDDGSVENVAPWILT-VGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIG 393
G D + + + ++ + S + +L N VI ++ G L+ +Y G
Sbjct: 156 GLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPN--VITVSATDNNGNLSSFSNY---G 210
Query: 394 GADARIA 400
+ +A
Sbjct: 211 NSRIDLA 217
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
Query: 527 PDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWS 586
D+ APG +I++ SP SGTS + P V+G LV++ PD +
Sbjct: 200 VDLAAPGENIVSL-------SPGGDG-----LATTSGTSFAAPFVSGTAALVRSRFPDLT 247
Query: 587 PAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSAL 633
A ++ I TA P G G V+P +AL
Sbjct: 248 AAQVRRRIEATAD------HP------ARGGRDDYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIP----YIMMSGTSMSCPHVAGIVGLVKTLHP 583
DV+APG D A PD P Y + GTSM+ PHVAG+ L+K+++P
Sbjct: 214 DVSAPGGDC--ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNP 271
Query: 584 DWSPAAIKSAIMTT 597
+PA I+S + +T
Sbjct: 272 SLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
+A F++ G D+ APGV+I++ + P Y+ +SGTSM+
Sbjct: 318 VASFSNDGSP------TGVDIAAPGVNILSLSAVNTLPGDGAD------YVTLSGTSMAA 365
Query: 569 PHVAGIVGLVKTLHP-DWSPAAIKSAIMTTARAEDSSNRPIL----DQNTGEKATPFAYG 623
PHV+G+ LV + +P + +PA +++ I+TTA S L N AT A G
Sbjct: 366 PHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGG 425
Query: 624 AGHVNPNSALDPGLVYDLT 642
N + + T
Sbjct: 426 TLPANGTGSSQGAVEAPGT 444
|
Length = 508 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
A F+S GP D + KPDV A G I + + +GTS SC
Sbjct: 186 KASFSSIGPTA-DGRL-KPDVMALGTGIYVINGDGN-------------ITYANGTSFSC 230
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599
P +AG++ + HP+W+ IK AI+ +A
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 507 RMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSM 566
R F + + + + D+ APGVDI++A Y MSGTSM
Sbjct: 198 RTGNFS-----AVANFSNGEVDIAAPGVDIVSAAPGGG-------------YRSMSGTSM 239
Query: 567 SCPHVAGIVGL 577
+ PHVAG+ L
Sbjct: 240 ATPHVAGVAAL 250
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-07
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 393 GGADARIANVSE-IDASECKKGSIDPAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMIL 450
G + V DA C + + V+GKI++ G EK + A +AGA G+I+
Sbjct: 4 GTGTGPLVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVII 63
Query: 451 VSSKESGNKVLNMV---HHLPTAHLNYTDGESV 480
++ G +P ++Y DGE++
Sbjct: 64 YNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 41/138 (29%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH T G VP G YG A A +A + I
Sbjct: 44 DGHGHGTHCAGTIFGRDVP-----GPRYGVA----RGAEIALIGKV---LGDGGGGDGGI 91
Query: 283 LSAYDLAIHDGVDVISASLG-----------------SIAREHLKNTIAIGSFHAMMN-- 323
L+ A+ +G DVIS SLG S A E + + F A+M
Sbjct: 92 LAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARL--FDALMTLV 149
Query: 324 --------GIVSVAAAGN 333
G + VAAAGN
Sbjct: 150 AAQAALARGTLIVAAAGN 167
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D +GHGTH N + YG G +P+A + AY+V + S I
Sbjct: 66 DCQGHGTHVAGIIAAN--------PNAYG-FTGVAPEATLGAYRVF---GCSGSTTEDTI 113
Query: 283 LSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNS---GPDDG 339
++A+ A DG DVI+ASLG ++ A+ + + G+V AAGN GP
Sbjct: 114 IAAFLRAYEDGADVITASLGG-PSGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYA 172
Query: 340 SVENVAPWILTVGASTTDREFTSY 363
S ++ V + D F+S+
Sbjct: 173 SSPASGRGVIAVAS--VDSYFSSW 194
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-06
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAK--VQGKILICYGARYGD----EKG 437
L+ + V C G+ D + V+GKI++ R G EK
Sbjct: 7 TGYAGSALLFNPPSSPVGVVAGPLVGCGYGTTDDSGADVKGKIVLV---RRGGCSFSEKV 63
Query: 438 QWAAQAGAVGMILVSSKESGNKVLNMVH------HLPTAHLNYTDGESVYAYINSTQNPT 491
+ A +AGA +I+ ++ + + V +PT ++Y DGE++ + + + + T
Sbjct: 64 KNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKTVT 123
Query: 492 ASM 494
+
Sbjct: 124 VDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 51/225 (22%), Positives = 76/225 (33%), Gaps = 64/225 (28%)
Query: 142 GEDVIIANVDSGVWPESKSFAD-DGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQG 200
G+ V++ +D+G+ F + DG I W Q G Y +
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWD---QTIPGGPPP-GGYYGGGEYTEEI 58
Query: 201 TIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKA 260
L + NP ++P RDE GHGTH A GN N + KG +P+A
Sbjct: 59 INAALASDNPYDIVP-----SRDENGHGTHVAGIAAGNGDNN-----PDF---KGVAPEA 105
Query: 261 RVA--------AYKVCWKPNENDSCASADILSA----YDLAI------------------ 290
+ Y + + DI+ A YD A+
Sbjct: 106 ELIVVKLKQAKKYLREFYEDV-PFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGS 164
Query: 291 HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSG 335
HDG ++ + +I+R + GI V AGN G
Sbjct: 165 HDGTSLLERYIDAISR---------------LRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 34/163 (20%)
Query: 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASAD 281
D+ GHGTHT+ T GN G G G +P AR A + + + AD
Sbjct: 49 YDDNGHGTHTMGTMVGN---------DGDGQQIGVAPGARWIACRAL----DRNGGNDAD 95
Query: 282 ILSAYD--LAIHD----------GVDVISASLGSIA--REHLKNTIAIGSFHAMMNGIVS 327
L LA D DVI+ S G + E L+ +A ++ A GI
Sbjct: 96 YLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA--AWRAA--GIFP 151
Query: 328 VAAAGNSGPDDGSVENVA---PWILTVGASTTDREFTSYVTLG 367
V AAGN GP ++ P VGA+ + + + G
Sbjct: 152 VFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSRG 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 510 AFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCP 569
A F++ G + D+ APGV I + Y +SGTSM+ P
Sbjct: 199 ASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGG------NYEYLSGTSMAAP 244
Query: 570 HVAGIVGLVKTLHPD 584
HV+G+ LV + PD
Sbjct: 245 HVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 513 TSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVA 572
+SRGP D A+ ++APG A P+ T + +M+GTSMS P+
Sbjct: 333 SSRGP-TADGAL-GVSISAPG----GAIA----SVPNWTLQGSQ---LMNGTSMSSPNAC 379
Query: 573 GIVGLV----KTLHPDWSPAAIKSAIMTTAR 599
G + L+ K ++P +++ A+ TA+
Sbjct: 380 GGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 32/163 (19%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D + HGTH +G A P A + + + + + + ADI
Sbjct: 44 DGDSHGTHVAGVIAAARDGGGM-----HGVA----PDATLYSARASA--SAGSTFSDADI 92
Query: 283 LSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGS------------FHAMMNGIVSVAA 330
+AYD GV +I+ S G +T GS A G + V A
Sbjct: 93 AAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFA 152
Query: 331 AGNSGPDDGSVENVA-PW--------ILTVGASTTDREFTSYV 364
AGN G + S+ A P+ + V A + SY
Sbjct: 153 AGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIASYS 195
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHK--RRIPY 558
+ S + ++SRGP++ KPD+ A I AF A G D +
Sbjct: 213 YLPGGSGDVVSWSSRGPSIA--GDPKPDLAA-----IGAFAWAPGRVLDSGGALDGNEAF 265
Query: 559 IMMSGTSMSCPHVAGIVGLV------KTLHPDWSPAAIKSAIMTTA 598
+ GTSM+ P AG LV K ++ P +++ +M+TA
Sbjct: 266 DLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (106), Expect = 1e-04
Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 16/176 (9%)
Query: 209 NPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVC 268
D V D+ GHGTH T N G A G A++ KV
Sbjct: 167 GGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNG---AGVAGVAPG----AKLLLVKVL 219
Query: 269 WKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMN--GIV 326
+ + + DVI+ SLG + + + A N G+V
Sbjct: 220 GSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALG-DALAAAANAGGVV 278
Query: 327 SVAAAGNSGPDDGSVENVAPW------ILTVGASTTDREFTSYVTLGNKMVIKGAS 376
VAAAGN G + + P ++ VGA S+ G+ + A+
Sbjct: 279 IVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAA 334
|
Length = 508 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
DV APG I + +PD Y SGTSM+ P V+G+ L+ + +P+ +
Sbjct: 233 DVFAPGERIYST-------TPDNE------YETDSGTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 588 AAIKSAIMTTA 598
+K I+ +
Sbjct: 280 KEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Query: 217 NLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDS 276
N D +GHGT A V +G G A G +P A++ ++ +
Sbjct: 32 NNDPTSDIDGHGTACAGVAAA-------VGNNGLGVA-GVAPGAKLMPVRI---ADSLGY 80
Query: 277 CASADILSAYDLAIHDGVDVISASLG-SIAREHLKNTIAIGSFHAMMN--GIVSVAAAGN 333
+DI A A +G DVIS S G S + E + + I + N G V + AAGN
Sbjct: 81 AYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAID-NAATYGRNGKGGVVLFAAGN 139
Query: 334 SGPDDGSVENVAPWILTVGASTTDREFTSYVTLGN 368
SG S P ++ V A+ ++ SY GN
Sbjct: 140 SGRSVSSGYAANPSVIAVAATDSNDARASYSNYGN 174
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 273 ENDSCAS-ADILSAYDLAIHDGVDVISASLGSIAR-----EHLKNTIAIGSFHAMMNGIV 326
E+ S D+ A +LA+ G +I+ S G + + L N +A+ N ++
Sbjct: 85 EDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVL 140
Query: 327 SVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383
VAAAGN G V P +L VGA L K GA +KG+L
Sbjct: 141 IVAAAGNEGCACLHVPAALPSVLAVGA-------MDDDGLPLKFSNWGADYRKKGIL 190
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 43/164 (26%), Positives = 56/164 (34%), Gaps = 29/164 (17%)
Query: 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKV-CWKPNENDSCA 278
T D +GHGTH G N S S Y KG +PKA++ + N +
Sbjct: 49 TKDDVDGHGTHVAGIIAGK--GNDSSSISLY---KGVAPKAKLYFQDIGDTSGNLSSPPD 103
Query: 279 SADILS-AYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMN-------GIVSVAA 330
+ S YD + S S GS + I+ V +
Sbjct: 104 LNKLFSPMYDAGAR----ISSNSWGSPVNN------GYTLLARAYDQFAYNNPDILFVFS 153
Query: 331 AGNSGPDDGSVENVAPW----ILTVGASTTDREFTSYVTLGNKM 370
AGN G DGS +P +LTVGAS LG
Sbjct: 154 AGNDGN-DGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSD 196
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPA 588
+ APG +I + P Y +SGTS + PHV+G L+ P +
Sbjct: 208 LAAPGENIYSTD-----PDGGNG------YGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 589 AIKSAIMTTAR 599
++ ++TTA
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 510 AFFTSRGPNMIDPAIFKPDVTAPGVDI--IAAFTEASGPSPDETHKRRIPYIMMSGTSMS 567
A +++ G + D+ APGV I ++G P Y SGTS +
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGG------YGSFSGTSFA 212
Query: 568 CPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597
P AG+ L+ + +P+ +PA ++ + +T
Sbjct: 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 521 DPAIFKPDVT--APGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLV 578
+ + V A GVDIIA A Y+ +SG S + PHV G+V L+
Sbjct: 155 PKSFWYIYVEFSADGVDIIAP---APH----------GRYLTVSGNSFAAPHVTGMVALL 201
Query: 579 KTLHPDWSPAAIKSAIMTTAR 599
+ PD +K + A
Sbjct: 202 LSEKPDIDANDLKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.87 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.74 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.15 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.13 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.88 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.54 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.49 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.46 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.45 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.43 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.41 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.37 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.37 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.3 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.28 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.26 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.18 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.16 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.14 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.11 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.05 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.95 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.55 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 97.13 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.3 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 95.73 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.2 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 94.82 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 93.86 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 93.85 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 93.17 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 92.41 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 91.74 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 89.27 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 88.14 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 87.59 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.99 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 83.57 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.78 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 81.41 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=449.77 Aligned_cols=306 Identities=51% Similarity=0.807 Sum_probs=259.3
Q ss_pred cccCccCCCcccCCccCCCCCCccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCc
Q 040503 111 AKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNK 189 (767)
Q Consensus 111 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ 189 (767)
++++++++++++|++.... ..+|..+.+|+||+|||||||||++||+|.+.+..++...|.+.|..+. ++...|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 4688999999999986521 1257789999999999999999999999999888999999999999887 66678999
Q ss_pred ccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeec
Q 040503 190 KLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCW 269 (767)
Q Consensus 190 ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 269 (767)
|+++.++|.++++...+. ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF-----NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhccCc-----ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 999999998876554220 023335678899999999999999998877766777777889999999999999998
Q ss_pred CCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceE
Q 040503 270 KPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWIL 349 (767)
Q Consensus 270 ~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vi 349 (767)
..+ .+..+++++||++|++++++|||||||........+.+..++..+.++|++||+||||+|+......+..||++
T Consensus 153 ~~~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 153 PDG---GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred CCC---CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 744 48899999999999999999999999987544566788888889999999999999999988777888899999
Q ss_pred EeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEec
Q 040503 350 TVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYG 429 (767)
Q Consensus 350 tVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 429 (767)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999721
Q ss_pred CCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCce
Q 040503 430 ARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMM 509 (767)
Q Consensus 430 g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 509 (767)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHH
Q 040503 510 AFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAA 589 (767)
Q Consensus 510 a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ 589 (767)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|
T Consensus 236 ---------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~ 297 (307)
T cd04852 236 ---------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAA 297 (307)
T ss_pred ---------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 467999999999999875311 11122335899999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 040503 590 IKSAIMTTAR 599 (767)
Q Consensus 590 ik~~L~~TA~ 599 (767)
||++|++||+
T Consensus 298 v~~~L~~tA~ 307 (307)
T cd04852 298 IKSALMTTAY 307 (307)
T ss_pred HHHHHHHhcC
Confidence 9999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=445.48 Aligned_cols=293 Identities=19% Similarity=0.181 Sum_probs=210.1
Q ss_pred ccccc--cCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcc-cCCcccceeEEcccchhhhhccCC
Q 040503 133 DSAWK--KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGV-SCNKKLIGIRYINQGTIEELRAKN 209 (767)
Q Consensus 133 ~~~~~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~-~~n~ki~g~~~~~~~~~~~~~~~~ 209 (767)
+.+|. .+.+|+||+|||||||||++||+|.++- |....+....... .+++..+. ...+|+..+
T Consensus 304 ~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni-------~~n~~el~GrdgiDdD~nG~vd---d~~G~nfVd---- 369 (639)
T PTZ00262 304 DETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI-------DVNVKELHGRKGIDDDNNGNVD---DEYGANFVN---- 369 (639)
T ss_pred hHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc-------ccccccccCccccccccCCccc---ccccccccC----
Confidence 34565 3568999999999999999999998641 1110000000000 00110100 011222111
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHh
Q 040503 210 PDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA 289 (767)
Q Consensus 210 ~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a 289 (767)
....|.|..||||||||||||...++. .+.||||+|+|+++|+++..+ .+..+++++||+||
T Consensus 370 -------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G---~G~~sdI~~AI~yA 431 (639)
T PTZ00262 370 -------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK---LGRLGDMFKCFDYC 431 (639)
T ss_pred -------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC---CccHHHHHHHHHHH
Confidence 133568899999999999999754322 248999999999999998776 47889999999999
Q ss_pred hhcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------ccc----CCCceEEe
Q 040503 290 IHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS--------------VEN----VAPWILTV 351 (767)
Q Consensus 290 ~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p~vitV 351 (767)
++.|++|||||||+.. ....+..++.+|.++|++||+||||+|+.... ++. ..|++|+|
T Consensus 432 ~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaV 508 (639)
T PTZ00262 432 ISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITV 508 (639)
T ss_pred HHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEE
Confidence 9999999999999763 34567788889999999999999999864211 111 24677888
Q ss_pred ccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC
Q 040503 352 GASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR 431 (767)
Q Consensus 352 gA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 431 (767)
||++.+..
T Consensus 509 GAv~~d~~------------------------------------------------------------------------ 516 (639)
T PTZ00262 509 SNLIKDKN------------------------------------------------------------------------ 516 (639)
T ss_pred eeccCCCC------------------------------------------------------------------------
Confidence 87543210
Q ss_pred chhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceec
Q 040503 432 YGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAF 511 (767)
Q Consensus 432 ~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 511 (767)
.....+.
T Consensus 517 -------------------------------------------------------------------------~~~s~s~ 523 (639)
T PTZ00262 517 -------------------------------------------------------------------------NQYSLSP 523 (639)
T ss_pred -------------------------------------------------------------------------Ccccccc
Confidence 0012345
Q ss_pred ccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHH
Q 040503 512 FTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIK 591 (767)
Q Consensus 512 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik 591 (767)
||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|+++||+
T Consensus 524 ~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~ 583 (639)
T PTZ00262 524 NSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVI 583 (639)
T ss_pred cccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 6666522 349999999999998763 79999999999999999999999999999999999
Q ss_pred HHHHhccccccCCCCcccCCCCCCCCCCCccCC-CccCccCcCCCCccc
Q 040503 592 SAIMTTARAEDSSNRPILDQNTGEKATPFAYGA-GHVNPNSALDPGLVY 639 (767)
Q Consensus 592 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~-G~vd~~~A~~~glv~ 639 (767)
++|++||.++... +..+|| |+||+++|++..+-+
T Consensus 584 ~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 584 RILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999865311 122343 899999999876654
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=438.39 Aligned_cols=414 Identities=22% Similarity=0.231 Sum_probs=249.0
Q ss_pred CCCCceEEEEecccCCCCCCCccC-CCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 140 RFGEDVIIANVDSGVWPESKSFAD-DGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 140 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
.+|+||+|||||||||+.||+|++ +|.+|+...|++.......+ .....+..+..+..+...... .+.+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-----~p~~~ 71 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP----GGYYGGGEYTEEIINAALASD-----NPYDI 71 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC----ccccCceEEeHHHHHHHHhcC-----Ccccc
Confidence 479999999999999999999986 56899999999988765411 111222222221122211111 22234
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCC-------CCCChhHHHHHHHHhhh
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN-------DSCASADILSAYDLAIH 291 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~aid~a~~ 291 (767)
....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+..++++.||+|+++
T Consensus 72 ~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~ 143 (455)
T cd07478 72 VPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYD 143 (455)
T ss_pred CcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHH
Confidence 456799999999999999986432 344899999999999999877521 12678899999999887
Q ss_pred c-----CCcEEEeccCCCC-ccCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCCCcccC-CC-----c-eEEeccccCc
Q 040503 292 D-----GVDVISASLGSIA-REHLKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGSVENV-AP-----W-ILTVGASTTD 357 (767)
Q Consensus 292 ~-----gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-~p-----~-vitVgA~~~~ 357 (767)
. .++|||||||... .....+.++.++..+.++ |++||+||||+|....+.... .+ . -+.|+.-.
T Consensus 144 ~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~-- 221 (455)
T cd07478 144 KALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE-- 221 (455)
T ss_pred HHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--
Confidence 4 4789999999873 345667888888887765 999999999999765554431 00 0 13333311
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC-chh--
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR-YGD-- 434 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~-~~~-- 434 (767)
..+.-.++......+.-.-..+. ....+.+... ........+ .....++.+..+.. ...
T Consensus 222 ~~~~~eiW~~~~d~~~v~i~sP~-----Ge~~~~i~~~-----------~~~~~~~~~--~~~~t~i~v~y~~~~~~~g~ 283 (455)
T cd07478 222 KGFNLEIWGDFPDRFSVSIISPS-----GESSGRINPG-----------IGGSESYKF--VFEGTTVYVYYYLPEPYTGD 283 (455)
T ss_pred cceEEEEecCCCCEEEEEEECCC-----CCccCccCcC-----------CCcceeEEE--EECCeEEEEEEcCCCCCCCC
Confidence 11111122111111100000000 0000000000 000000000 00011111111110 000
Q ss_pred ----HHHHHHHHcCceEEEEeccCCCCccccc-ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCc----eeeccCC
Q 040503 435 ----EKGQWAAQAGAVGMILVSSKESGNKVLN-MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSK----TEFNTRP 505 (767)
Q Consensus 435 ----~~~~~~~~~G~~g~i~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~----~~~~~~~ 505 (767)
...++ ...|-.-+.+..... ... ...|+|...+...+. .++......++++.... ++..+..
T Consensus 284 ~~i~i~~~~-~~~GiW~i~~~~~~~----~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~ 354 (455)
T cd07478 284 QLIFIRFKN-IKPGIWKIRLTGVSI----TDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQ 354 (455)
T ss_pred eEEEEEccC-CCccceEEEEEeccC----CCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeC
Confidence 00000 011111122221110 111 123666554443322 24445555555554332 3444444
Q ss_pred -CCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC--
Q 040503 506 -SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-- 582 (767)
Q Consensus 506 -~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-- 582 (767)
.+.++.||||||+. ++++||||+|||++|+++.+.. .|..++|||||||||||++|||+|.+
T Consensus 355 ~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~ 419 (455)
T cd07478 355 NNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIV 419 (455)
T ss_pred CCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchh
Confidence 35699999999998 8999999999999999999863 89999999999999999999999965
Q ss_pred ----CCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCC
Q 040503 583 ----PDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAG 625 (767)
Q Consensus 583 ----P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 625 (767)
|.|++++||++|++||+++. ...+++++||||
T Consensus 420 ~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 420 RGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred ccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999998763 234578899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=416.30 Aligned_cols=287 Identities=26% Similarity=0.255 Sum_probs=191.7
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||||||++||+|.++.. ..|...+. +...+ ..+++... .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d--------~~~~~------~~g~d~~~----------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD--------YKAYL------LPGMDKWG----------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC--------cCCCc------cCCcCCCC----------CccCCC
Confidence 8999999999999999999975420 01111000 00011 11111110 012346
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccC-CCcccccCCCCeEEEEEeecCCCCCCCCChhHHHH-------HHHH--hhh
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSG-YGTAKGGSPKARVAAYKVCWKPNENDSCASADILS-------AYDL--AIH 291 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------aid~--a~~ 291 (767)
.|.+||||||||||||....+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.. +++| +.+
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~ 129 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGG 129 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccC
Confidence 7899999999999999864433322221 23568999999999999997543 232333333 3444 346
Q ss_pred cCCcEEEeccCCCCccC-----cccHHHHHHHHH-HhCCCEEEEecCCCCCCCCCcc--cCCCceEEeccccCcceeeee
Q 040503 292 DGVDVISASLGSIAREH-----LKNTIAIGSFHA-MMNGIVSVAAAGNSGPDDGSVE--NVAPWILTVGASTTDREFTSY 363 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~~~-----~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~~ 363 (767)
++++|||||||.....+ ..+..+..++.+ .++|++||+||||+|+...+.. ..++++|+|||++..+..+
T Consensus 130 ~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-- 207 (311)
T cd07497 130 PRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-- 207 (311)
T ss_pred CCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc--
Confidence 79999999999863211 112233333332 3899999999999998655544 4578999999986432100
Q ss_pred EEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHc
Q 040503 364 VTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQA 443 (767)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 443 (767)
.+.+.
T Consensus 208 ------------------------~~~~~--------------------------------------------------- 212 (311)
T cd07497 208 ------------------------FYLFG--------------------------------------------------- 212 (311)
T ss_pred ------------------------hhhhc---------------------------------------------------
Confidence 00000
Q ss_pred CceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCC
Q 040503 444 GAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPA 523 (767)
Q Consensus 444 G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 523 (767)
......+.++.||||||+. ++
T Consensus 213 ---------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~g 233 (311)
T cd07497 213 ---------------------------------------------------------YLPGGSGDVVSWSSRGPSI--AG 233 (311)
T ss_pred ---------------------------------------------------------cccCCCCCccccccCCCCc--cc
Confidence 0001135789999999998 89
Q ss_pred cccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC------CCCHHHHHHHHHhc
Q 040503 524 IFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP------DWSPAAIKSAIMTT 597 (767)
Q Consensus 524 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~sp~~ik~~L~~T 597 (767)
++||||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++|
T Consensus 234 ~~kPdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~t 310 (311)
T cd07497 234 DPKPDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMST 310 (311)
T ss_pred CCCCceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhc
Confidence 999999999999999876542100 011224799999999999999999999999886 68999999999999
Q ss_pred c
Q 040503 598 A 598 (767)
Q Consensus 598 A 598 (767)
|
T Consensus 311 A 311 (311)
T cd07497 311 A 311 (311)
T ss_pred C
Confidence 7
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=406.56 Aligned_cols=243 Identities=25% Similarity=0.337 Sum_probs=198.4
Q ss_pred cccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCC
Q 040503 136 WKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIP 215 (767)
Q Consensus 136 ~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 215 (767)
|+.+++|+||+|||||||||.+||+|.+. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 88999999999999999999999999742 00111111
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCc
Q 040503 216 QNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVD 295 (767)
Q Consensus 216 ~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvd 295 (767)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ .+..+.++++|+||++++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~~ 101 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKID 101 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCCC
Confidence 12345778999999999998741 247999999999999998766 36678899999999999999
Q ss_pred EEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEe
Q 040503 296 VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIK 373 (767)
Q Consensus 296 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~ 373 (767)
|||||||... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 102 Vin~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------- 162 (255)
T cd07479 102 VLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------- 162 (255)
T ss_pred EEEeeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------
Confidence 9999999863 2345566677788899999999999999765443 345688999998543
Q ss_pred eeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEecc
Q 040503 374 GASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSS 453 (767)
Q Consensus 374 g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~ 453 (767)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCC----CCCcccceE
Q 040503 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMI----DPAIFKPDV 529 (767)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI 529 (767)
.+.++.|||+|++.. ..+++||||
T Consensus 163 ----------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di 190 (255)
T cd07479 163 ----------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDI 190 (255)
T ss_pred ----------------------------------------------------CCccccccCCCCCcccccCCCCCcCccE
Confidence 246788999996521 267889999
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC----CCCHHHHHHHHHhccccc
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP----DWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~sp~~ik~~L~~TA~~~ 601 (767)
+|||.+|+++.... .|..++|||||||||||++|||+|++| .++|++||++|++||+++
T Consensus 191 ~apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 191 VTYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred EecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999876542 788999999999999999999999999 799999999999999875
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=407.06 Aligned_cols=270 Identities=23% Similarity=0.226 Sum_probs=201.6
Q ss_pred CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
+++|+||+|+|||||||..||++.+... .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 5799999999999999999986543211 111111111111 1
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
....|..||||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++|||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin 95 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIV 95 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEE
Confidence 234578899999999994 67999999998873 4478899999999999999999
Q ss_pred eccCCCCccC-cccHHHHHHHHHHhC-CCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEEecCceeEeee
Q 040503 299 ASLGSIAREH-LKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVTLGNKMVIKGA 375 (767)
Q Consensus 299 ~SlG~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~ 375 (767)
||||...... .+..+..++.++.++ |++||+||||+|+.... .++..|++|+|||++...........+
T Consensus 96 ~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------- 167 (275)
T cd05562 96 DDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------- 167 (275)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc--------
Confidence 9999864332 344677888888887 99999999999975432 345689999999987543110000000
Q ss_pred eeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCC
Q 040503 376 SVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 376 ~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC-
Q 040503 456 SGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV- 534 (767)
Q Consensus 456 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~- 534 (767)
........+.|+++||+. ++++||||+|||.
T Consensus 168 ----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~ 199 (275)
T cd05562 168 ----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGV 199 (275)
T ss_pred ----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcc
Confidence 000012345678899987 7899999999975
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCC
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTG 614 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~ 614 (767)
++.+.+.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++..
T Consensus 200 ~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~----------- 255 (275)
T cd05562 200 NGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE----------- 255 (275)
T ss_pred cccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------
Confidence 44444332 279999999999999999999999999999999999999999987632
Q ss_pred CCCCCCccCCCccCccCcCC
Q 040503 615 EKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 615 ~~~~~~~~G~G~vd~~~A~~ 634 (767)
...+..||||+||+.+|++
T Consensus 256 -~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 256 -PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred -CCCCCCcCcCcccHHHHhh
Confidence 2245689999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=418.41 Aligned_cols=313 Identities=31% Similarity=0.354 Sum_probs=235.2
Q ss_pred cccccCC-CCCceEEEEecccCCCCCCCccCCCCCCCCC-----CccccccCCCCCcccCCcccceeEEcccchhhhhcc
Q 040503 134 SAWKKAR-FGEDVIIANVDSGVWPESKSFADDGMGPIPS-----KWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRA 207 (767)
Q Consensus 134 ~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 207 (767)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+.. .....++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3788887 9999999999999999999998764332211 12222221 2244566777777777654221
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecC--CCCCCCCChhHHHHH
Q 040503 208 KNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWK--PNENDSCASADILSA 285 (767)
Q Consensus 208 ~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~~~~~~~~~~i~~a 285 (767)
.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .. .+....++++
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~a 136 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAKA 136 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHHH
Confidence 11245789999999999999864321 1234589999999999999974 33 4788899999
Q ss_pred HHHhhhcCCcEEEeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc----------------cCCCce
Q 040503 286 YDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE----------------NVAPWI 348 (767)
Q Consensus 286 id~a~~~gvdVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~~p~v 348 (767)
++++++.|++|||||||.... ......+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 999999999999999998742 244566778888899999999999999985433221 224566
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+||+++...
T Consensus 217 i~Vga~~~~~---------------------------------------------------------------------- 226 (346)
T cd07475 217 LTVASANKKV---------------------------------------------------------------------- 226 (346)
T ss_pred eEEeeccccc----------------------------------------------------------------------
Confidence 6666643100
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
.....+.
T Consensus 227 -------------------------------------------------------------------------~~~~~~~ 233 (346)
T cd07475 227 -------------------------------------------------------------------------PNPNGGQ 233 (346)
T ss_pred -------------------------------------------------------------------------CCCCCCc
Confidence 0111357
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHh----CCC
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL----HPD 584 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ 584 (767)
++.||+|||+. ..++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.
T Consensus 234 ~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~ 298 (346)
T cd07475 234 MSGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPK 298 (346)
T ss_pred cCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88999999998 8999999999999999987653 7899999999999999999999997 789
Q ss_pred CCHHH----HHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCC
Q 040503 585 WSPAA----IKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 585 ~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
|++.+ ||.+|++||.+.... ......+.+..+|+|+||+.+|++
T Consensus 299 l~~~~~~~~ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 299 LSGEELVDLVKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCHHHHHHHHHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 99876 788999999853211 133455677889999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=405.07 Aligned_cols=294 Identities=29% Similarity=0.343 Sum_probs=228.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccc-hhhhhccCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQG-TIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~ 211 (767)
+.+|+.+++|+||+|||||+|||++||+|.+.-.. +.++.+.++|..+ +....
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~--------------------~~~~~~~~d~~~~~~~~~~------ 56 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP--------------------GCKVAGGYDFVGDDYDGTN------ 56 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC--------------------CceeccccccCCccccccc------
Confidence 57999999999999999999999999999864110 1112222223211 11000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
...+...+.|..||||||||||+|...+ .| +.||||+|+|+.+|++...+ ....+.++++|++|++
T Consensus 57 --~~~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~ 122 (312)
T cd07489 57 --PPVPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAYE 122 (312)
T ss_pred --CCCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHHh
Confidence 1122345667899999999999998643 23 38999999999999998666 4778889999999999
Q ss_pred cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEecC
Q 040503 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
++++|||||||... .+..+.+...+.++.++|+++|+||||+|..... .+...+++|+||+++
T Consensus 123 ~~~~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 123 DGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred cCCCEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 99999999999873 3344677778888999999999999999865322 234567888888732
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.||++||+. +.+.|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4578999998 7899999
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC-CCCCHHHHHHHHHhccccccCCCCc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-PDWSPAAIKSAIMTTARAEDSSNRP 607 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~sp~~ik~~L~~TA~~~~~~g~~ 607 (767)
|+|||.+|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++......
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999987642 168999999999999999999999999 9999999999999999887533211
Q ss_pred ccCCCCCCCCCCCccCCCccCccCcCCCCc
Q 040503 608 ILDQNTGEKATPFAYGAGHVNPNSALDPGL 637 (767)
Q Consensus 608 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~gl 637 (767)
- .....++...+|||+||+.+|++..-
T Consensus 275 ~---~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 275 S---ALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred c---cccCCCCHhhcCcceeeHHHHhcCCc
Confidence 1 11114667899999999999998643
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=388.60 Aligned_cols=248 Identities=25% Similarity=0.324 Sum_probs=202.7
Q ss_pred ccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCC
Q 040503 135 AWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVI 214 (767)
Q Consensus 135 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (767)
+|..+++|+||+|||||+|||++||+|.+....+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986421110 00000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCC
Q 040503 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294 (767)
Q Consensus 215 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gv 294 (767)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGA 107 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCC
Confidence 012345778999999999998742 13489999999999999976542 2457889999999999999
Q ss_pred cEEEeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEe
Q 040503 295 DVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIK 373 (767)
Q Consensus 295 dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~ 373 (767)
+|||||||.... ......+..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 171 (267)
T cd07476 108 HIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------- 171 (267)
T ss_pred CEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------
Confidence 999999997632 234566788888999999999999999997766667778999999985421
Q ss_pred eeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEecc
Q 040503 374 GASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSS 453 (767)
Q Consensus 374 g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~ 453 (767)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCC
Q 040503 454 KESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 533 (767)
+.++.||++|+.. .||||+|||
T Consensus 172 -----------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG 193 (267)
T cd07476 172 -----------------------------------------------------GLPLKFSNWGADY-----RKKGILAPG 193 (267)
T ss_pred -----------------------------------------------------CCeeeecCCCCCC-----CCceEEecC
Confidence 3456789999764 388999999
Q ss_pred CcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC----CCHHHHHHHHHhccccccC
Q 040503 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD----WSPAAIKSAIMTTARAEDS 603 (767)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~sp~~ik~~L~~TA~~~~~ 603 (767)
.+|+++.+.. .|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 194 ~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 194 ENILGAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred CCceeecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9999988763 7999999999999999999999999887 9999999999999998754
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=380.06 Aligned_cols=238 Identities=24% Similarity=0.335 Sum_probs=192.6
Q ss_pred eEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 145 VIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
|+|||||||||++||+|.+. ++..+++. .....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC-------------------CCCCCCC
Confidence 78999999999999999753 11111111 0134577
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~ 304 (767)
.+|||||||||+|.... . .|+||+|+|+.+|++...+....++..++++||+||++.|++|||||||..
T Consensus 36 ~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~ 104 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP 104 (239)
T ss_pred CCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 89999999999998522 1 699999999999999865322247788999999999999999999999975
Q ss_pred CccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccC
Q 040503 305 AREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383 (767)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (767)
. ...+..++.++.++|++||+||||+|+.. ..+++..+++|+||+++.+
T Consensus 105 ~----~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------- 154 (239)
T cd05561 105 P----NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------- 154 (239)
T ss_pred C----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------
Confidence 2 35677788889999999999999999753 3445567899999985431
Q ss_pred CCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccc
Q 040503 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNM 463 (767)
Q Consensus 384 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~ 463 (767)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCC
Q 040503 464 VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEA 543 (767)
Q Consensus 464 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 543 (767)
+.++.||++|+.. ||.|||.+|+++.+..
T Consensus 155 -------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~ 183 (239)
T cd05561 155 -------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG 183 (239)
T ss_pred -------------------------------------------CCccccCCCCCcc--------eEEccccceecccCCC
Confidence 3567899999987 9999999999976552
Q ss_pred CCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccC
Q 040503 544 SGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYG 623 (767)
Q Consensus 544 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 623 (767)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||
T Consensus 184 -------------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G 237 (239)
T cd05561 184 -------------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFG 237 (239)
T ss_pred -------------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcC
Confidence 799999999999999999999999999 99999999999999876432 3456889
Q ss_pred CC
Q 040503 624 AG 625 (767)
Q Consensus 624 ~G 625 (767)
||
T Consensus 238 ~G 239 (239)
T cd05561 238 YG 239 (239)
T ss_pred CC
Confidence 88
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=390.33 Aligned_cols=292 Identities=38% Similarity=0.500 Sum_probs=217.3
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||+|||++||+|.+.. .+++++...++|............ ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRP--YPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCcccccc--cccccccCCC
Confidence 899999999999999999998531 122334444444322110000000 0000011234
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEecc
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~Sl 301 (767)
.|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++..+ .+...+++++|+|+++++++||||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S~ 127 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLSL 127 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 56899999999999988643 23348999999999999998554 47889999999999999999999999
Q ss_pred CCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeec
Q 040503 302 GSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQ 379 (767)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (767)
|.... ...+.+..++.++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 128 g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~--------------------- 185 (295)
T cd07474 128 GSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD--------------------- 185 (295)
T ss_pred CCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC---------------------
Confidence 98732 2456778888899999999999999998765544 34578999999964210
Q ss_pred cccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcc
Q 040503 380 KGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNK 459 (767)
Q Consensus 380 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 459 (767)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCC-CCCCCCCCcccceEEeCCCcEEE
Q 040503 460 VLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSR-GPNMIDPAIFKPDVTAPGVDIIA 538 (767)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~s 538 (767)
.........|+++ |++. ..++||||+|||.+|++
T Consensus 186 -------------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~ 220 (295)
T cd07474 186 -------------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMS 220 (295)
T ss_pred -------------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEe
Confidence 0001233344454 5555 78899999999999999
Q ss_pred eecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCC
Q 040503 539 AFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618 (767)
Q Consensus 539 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 618 (767)
++.... ..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...+
T Consensus 221 ~~~~~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~ 281 (295)
T cd07474 221 TAPGSG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYP 281 (295)
T ss_pred eccCCC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCC
Confidence 987631 278999999999999999999999999999999999999999998754321 1124
Q ss_pred CCccCCCccCccCc
Q 040503 619 PFAYGAGHVNPNSA 632 (767)
Q Consensus 619 ~~~~G~G~vd~~~A 632 (767)
+..+|||+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 57899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=387.04 Aligned_cols=271 Identities=23% Similarity=0.272 Sum_probs=190.6
Q ss_pred CceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCccc--ceeEEcccchhhh----hccCCCC--CC
Q 040503 143 EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNKKL--IGIRYINQGTIEE----LRAKNPD--AV 213 (767)
Q Consensus 143 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ki--~g~~~~~~~~~~~----~~~~~~~--~~ 213 (767)
|+|+|||||||||++||+|++. .|.+..+... -....-|+.+ +++++|...+... ..+.+.. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999875 4443322211 0000011111 2233333211100 0000000 00
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g 293 (767)
...+...+.+..+|||||||||++...++. | +.||||+|+|+.+|++.... ....++++||+||++.|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~~g~----~~~~~i~~Ai~~a~~~g 141 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVPNGD----ERDKDIANAIRYAVDNG 141 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEecCCC----cCHHHHHHHHHHHHHCC
Confidence 011233455789999999999999864332 2 48999999999999986443 66788999999999999
Q ss_pred CcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc---c--------cCCCceEEeccccCcceeee
Q 040503 294 VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV---E--------NVAPWILTVGASTTDREFTS 362 (767)
Q Consensus 294 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~~p~vitVgA~~~~~~~~~ 362 (767)
++|||||||.... .....+..++..+.++|+++|+||||+|...... + ...+++|+|||++...
T Consensus 142 ~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---- 216 (291)
T cd07483 142 AKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---- 216 (291)
T ss_pred CcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----
Confidence 9999999997522 2334567777888999999999999998542211 1 1236677777754321
Q ss_pred eEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHH
Q 040503 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQ 442 (767)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 442 (767)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCC
Q 040503 443 AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDP 522 (767)
Q Consensus 443 ~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 522 (767)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01246889999974
Q ss_pred CcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 523 AIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
+|||+|||.+|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 359999999999987653 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=380.51 Aligned_cols=245 Identities=29% Similarity=0.380 Sum_probs=195.6
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCC-CC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTT-GR 222 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 222 (767)
||+||||||||+++||+|... ...++.++.+.++|.+. ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999532 11123456666666543 112 35
Q ss_pred CCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccC
Q 040503 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLG 302 (767)
Q Consensus 223 D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG 302 (767)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++||.+.|++|||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G 113 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLG 113 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 788999999999999852 235899999999999987643311 245667899999999999999999999
Q ss_pred CCCccC------------cccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCcccCCCceEEeccccCcceeeeeEEec
Q 040503 303 SIAREH------------LKNTIAIGSFHAMMNGIVSVAAAGNSGPDD---GSVENVAPWILTVGASTTDREFTSYVTLG 367 (767)
Q Consensus 303 ~~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 367 (767)
...... ....+..+++.+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----------- 182 (261)
T cd07493 114 YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----------- 182 (261)
T ss_pred cCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----------
Confidence 873211 123577788889999999999999999763 334456799999998542
Q ss_pred CceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceE
Q 040503 368 NKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVG 447 (767)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g 447 (767)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccc
Q 040503 448 MILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKP 527 (767)
Q Consensus 448 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 527 (767)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 13567899999988 899999
Q ss_pred eEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999985433 27899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=378.50 Aligned_cols=247 Identities=31% Similarity=0.388 Sum_probs=194.5
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|||||+||+++||+|.+. |.+... ..+ ...++..+ .......+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~------~~~~~~~d--------~~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSA------DHDYNWFD--------PVGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCc------cccccccc--------CCCCCCCC
Confidence 89999999999999999999864 111000 000 00000000 00112355
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh----------
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH---------- 291 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~---------- 291 (767)
.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhcccccccccc
Confidence 68889999999999987532 2237999999999999998765 788899999999875
Q ss_pred --cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEe
Q 040503 292 --DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 292 --~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
.|++|||||||.... ....+..++..+.++|++||+||||+|..... .+...|++|+|||++.+
T Consensus 116 ~~~~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 116 PDLAPDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred cccCCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 789999999998742 34556666777889999999999999865443 34567899999985432
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.++.||++||.. .+++|
T Consensus 185 ------------------------------------------------------------~~~~~~S~~g~~~--~~~~~ 202 (264)
T cd07481 185 ------------------------------------------------------------DVLADFSSRGPST--YGRIK 202 (264)
T ss_pred ------------------------------------------------------------CCCccccCCCCCC--CCCcC
Confidence 4678899999998 78999
Q ss_pred ceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 040503 527 PDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD--WSPAAIKSAIMTTAR 599 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~sp~~ik~~L~~TA~ 599 (767)
|||+|||.+|.++++.. .|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 203 ~dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 203 PDISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ceEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999999998763 7899999999999999999999999999 999999999999984
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=375.94 Aligned_cols=334 Identities=23% Similarity=0.347 Sum_probs=261.2
Q ss_pred CCCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccc------cc------------cceEEEEc---ceeee
Q 040503 25 AAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEE------AE------------SSIFHSYG---RFING 83 (767)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~------------~~i~~~y~---~~~~g 83 (767)
.....|||.|++... ++..+.|.++++...+.... .. ..+.+.|. .++++
T Consensus 78 ~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~ 148 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG 148 (501)
T ss_pred ccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence 346799999996544 46677788887766542211 00 01334443 37888
Q ss_pred EEEEcCHHHHHHhhCCCCeEEEEeCcccccCc-----cCCCcccCCccCCCCC-------CccccccCCCCCceEEEEec
Q 040503 84 FGAVLEEEHAKQLENHPGVVSVFPDEGAKLHT-----TRSWDFLGLEKDNFIP-------PDSAWKKARFGEDVIIANVD 151 (767)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~~~~~~~G~gV~VgVID 151 (767)
+...++.+-+..++++|-++.++++..++... .+....|||-++.+.. ...++ +-..|+||...|+|
T Consensus 149 y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y-~~~aG~gvtaYv~D 227 (501)
T KOG1153|consen 149 YTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVY-EIDAGKGVTAYVLD 227 (501)
T ss_pred cccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEe-ecccCCCeEEEEec
Confidence 88999999999999999999999998876553 2333445555442211 01222 23489999999999
Q ss_pred ccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhh
Q 040503 152 SGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHT 231 (767)
Q Consensus 152 tGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThV 231 (767)
|||+.+||+|.++ +.|-- |.. ......|++||||||
T Consensus 228 TGVni~H~dFegR------a~wGa-~i~-------------------------------------~~~~~~D~nGHGTH~ 263 (501)
T KOG1153|consen 228 TGVNIEHPDFEGR------AIWGA-TIP-------------------------------------PKDGDEDCNGHGTHV 263 (501)
T ss_pred ccccccccccccc------eeccc-ccC-------------------------------------CCCcccccCCCccee
Confidence 9999999999875 12211 100 012456899999999
Q ss_pred hhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc---------CCcEEEeccC
Q 040503 232 LATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD---------GVDVISASLG 302 (767)
Q Consensus 232 Agi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~---------gvdVIn~SlG 302 (767)
||+|++.. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|
T Consensus 264 AG~I~sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 264 AGLIGSKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred eeeeeccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 99999986 6889999999999999998 69999999999999986 4899999999
Q ss_pred CCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-cCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccc
Q 040503 303 SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE-NVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381 (767)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (767)
+. ..-.+..|++.|.+.||++++||||+..+++..+ +.+..+|||||++..
T Consensus 327 g~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------ 378 (501)
T KOG1153|consen 327 GF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------ 378 (501)
T ss_pred Cc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------------
Confidence 97 4456888889999999999999999998877665 567899999997642
Q ss_pred cCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccc
Q 040503 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVL 461 (767)
Q Consensus 382 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 461 (767)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeec
Q 040503 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFT 541 (767)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 541 (767)
+.+|.||+||++. ||.|||++|+|+|.
T Consensus 379 ---------------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~i 405 (501)
T KOG1153|consen 379 ---------------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWI 405 (501)
T ss_pred ---------------------------------------------cchhhhcCcccee--------eeecCchhhhhhhh
Confidence 5789999999999 99999999999999
Q ss_pred CCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC---------CCHHHHHHHHHhccccc
Q 040503 542 EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD---------WSPAAIKSAIMTTARAE 601 (767)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~sp~~ik~~L~~TA~~~ 601 (767)
+... .-.+.||||||+|||||++|..+..+|. .||.++|..++.-..+.
T Consensus 406 Gs~~-----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~d 463 (501)
T KOG1153|consen 406 GSNN-----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQD 463 (501)
T ss_pred cCcc-----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccccc
Confidence 8643 6678999999999999999999999883 38999998888766543
|
|
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=378.28 Aligned_cols=264 Identities=25% Similarity=0.322 Sum_probs=203.5
Q ss_pred cccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCC
Q 040503 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAV 213 (767)
Q Consensus 134 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (767)
++|..+++|+||+|+|||||||++||+|.+.... .+...+...+.....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~~~------- 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFVPN------- 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccccc-------
Confidence 4799999999999999999999999999875100 000000111000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g 293 (767)
.........|..||||||||||+|+..+....-|++ .+.|+||+|+|+.+|++...+ .+..+.++++|+||++.|
T Consensus 50 ~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~g 124 (273)
T cd07485 50 VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADNG 124 (273)
T ss_pred cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHcC
Confidence 000122445788999999999999764432222221 346799999999999998765 478889999999999999
Q ss_pred CcEEEeccCCCCccCcccHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEe
Q 040503 294 VDVISASLGSIAREHLKNTIAIGSFHAMMN-------GIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 294 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
++|||||||......+...+..++..+.++ |++||+||||+|......++..+++|+||+++.+
T Consensus 125 ~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------- 195 (273)
T cd07485 125 AVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------- 195 (273)
T ss_pred CcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------
Confidence 999999999874344556677778888887 9999999999998776666778999999985431
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.++.||++|+..
T Consensus 196 ------------------------------------------------------------~~~~~~S~~g~~~------- 208 (273)
T cd07485 196 ------------------------------------------------------------DNKASFSNYGRWV------- 208 (273)
T ss_pred ------------------------------------------------------------CCcCccccCCCce-------
Confidence 3567899999987
Q ss_pred ceEEeCCC-cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 040503 527 PDVTAPGV-DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPD-WSPAAIKSAIMTT 597 (767)
Q Consensus 527 PDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~sp~~ik~~L~~T 597 (767)
||+|||. .|+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 209 -~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 -DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 89988765321 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=383.36 Aligned_cols=222 Identities=24% Similarity=0.316 Sum_probs=167.4
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEecc
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASL 301 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~Sl 301 (767)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+ ..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 478899999999999985332 33489999999999999865431 123446799999999999999999999
Q ss_pred CCCCccCcccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCccc---CCCceEEeccccCcceeeeeEEecCceeEeeeee
Q 040503 302 GSIAREHLKNTIAIGSFH-AMMNGIVSVAAAGNSGPDDGSVEN---VAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377 (767)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 377 (767)
|..........+..++.+ +.++||+||+||||+|+...+... ..+++|+|||+.......
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~---------------- 316 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA---------------- 316 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc----------------
Confidence 987321112233444444 347899999999999988776653 358999999964321000
Q ss_pred eccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCC
Q 040503 378 SQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESG 457 (767)
Q Consensus 378 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~ 457 (767)
..+.+.
T Consensus 317 ---------~~y~~~----------------------------------------------------------------- 322 (412)
T cd04857 317 ---------AEYSLR----------------------------------------------------------------- 322 (412)
T ss_pred ---------cccccc-----------------------------------------------------------------
Confidence 000000
Q ss_pred cccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEE
Q 040503 458 NKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDII 537 (767)
Q Consensus 458 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 537 (767)
....+.++.||||||+. ++++||||+|||+.|.
T Consensus 323 ---------------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~ 355 (412)
T cd04857 323 ---------------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA 355 (412)
T ss_pred ---------------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence 00135689999999998 9999999999999998
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhcccc
Q 040503 538 AAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARA 600 (767)
Q Consensus 538 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~ 600 (767)
+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||++
T Consensus 356 s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 356 SVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred EcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 752211 12789999999999999999999985 57899999999999999975
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=370.50 Aligned_cols=257 Identities=30% Similarity=0.447 Sum_probs=204.5
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
|+||+|+|||+||+++||+|.+... ....+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------------cCCCCC
Confidence 8999999999999999999986411 011111100 012345
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc----CCcEE
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD----GVDVI 297 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~----gvdVI 297 (767)
.|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ .+...++++||+|+++. +++||
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~Ii 110 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRVV 110 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceEE
Confidence 677899999999999986432 23358999999999999998876 47788999999999998 99999
Q ss_pred EeccCCCCc-cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcccCCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 298 SASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG--SVENVAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 298 n~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
|||||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 111 n~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------- 175 (264)
T cd07487 111 NLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------- 175 (264)
T ss_pred EeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence 999998742 446677888899999999999999999997765 34456789999999654320
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV 534 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 534 (767)
....++.||++||+. ++++||||+|||.
T Consensus 176 --------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~ 203 (264)
T cd07487 176 --------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGE 203 (264)
T ss_pred --------------------------------------------------CCccccccccCCCCC--CCCcCCCEEcccc
Confidence 002478899999998 8999999999999
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
+|+++.+.... ........|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 204 ~i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 204 NIVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ceEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99998654311 01122347899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=373.35 Aligned_cols=266 Identities=24% Similarity=0.218 Sum_probs=188.3
Q ss_pred EEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCC
Q 040503 146 IIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEE 225 (767)
Q Consensus 146 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 225 (767)
+|||||||||..||+|.+. +.....+... .....|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------------~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------------PGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------------CCCcCCCC
Confidence 7999999999999999753 1111111100 01156899
Q ss_pred CCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCC-CCCCChhHHHHHHHHhhhcC---CcEEEecc
Q 040503 226 GHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE-NDSCASADILSAYDLAIHDG---VDVISASL 301 (767)
Q Consensus 226 gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~-~~~~~~~~i~~aid~a~~~g---vdVIn~Sl 301 (767)
||||||||||++.... .....|+||+|+|+.+|++...+. ......+++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 123479999999999999987641 11356788999999999854 59999999
Q ss_pred CCCCccC--cccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCc------------ccCCCceEEeccccCcceeeeeEEe
Q 040503 302 GSIAREH--LKNTIAIGSFH-AMMNGIVSVAAAGNSGPDDGSV------------ENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 302 G~~~~~~--~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
|...... ....+..++.+ +.++|++||+||||+|...... +..++++|+|||++.+.......
T Consensus 111 G~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s-- 188 (291)
T cd04847 111 GSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA-- 188 (291)
T ss_pred CCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc--
Confidence 9973221 11245555544 4589999999999999765432 23467999999987643110000
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
.+
T Consensus 189 ------------------------~~------------------------------------------------------ 190 (291)
T cd04847 189 ------------------------RY------------------------------------------------------ 190 (291)
T ss_pred ------------------------cc------------------------------------------------------
Confidence 00
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.......+.||++||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 99999
Q ss_pred ceEEeCCCcEEEeecCCCCCC-----CCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 527 PDVTAPGVDIIAAFTEASGPS-----PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
|||+|||++|.+......... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654211000 0001112348999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=360.73 Aligned_cols=233 Identities=33% Similarity=0.438 Sum_probs=195.3
Q ss_pred ccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCC
Q 040503 135 AWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVI 214 (767)
Q Consensus 135 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (767)
+|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 777889999999999999999999999754 1112222211
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc--
Q 040503 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD-- 292 (767)
Q Consensus 215 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~-- 292 (767)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....+.++++++|+++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~~ 115 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDAT 115 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhccc
Confidence 125578899999999999874 6899999999999998775 47788999999999987
Q ss_pred ---CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 ---GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 ---gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|||||||... ...+..++.++.++|+++|+||||+|.... ..+...|++|+||+++.+
T Consensus 116 ~~~~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------- 180 (255)
T cd04077 116 KRGKPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------- 180 (255)
T ss_pred ccCCCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------
Confidence 4899999999873 456777788899999999999999997653 444567999999996532
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.++.||++||.. |
T Consensus 181 ----------------------------------------------------------~~~~~~S~~g~~~--------~ 194 (255)
T cd04077 181 ----------------------------------------------------------DARASFSNYGSCV--------D 194 (255)
T ss_pred ----------------------------------------------------------CCccCcccCCCCC--------c
Confidence 3467899999988 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARA 600 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~ 600 (767)
|+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 195 i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 195 IFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999876422 279999999999999999999999999999999999999999963
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=360.80 Aligned_cols=253 Identities=31% Similarity=0.378 Sum_probs=188.8
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||+|||++||+|.+. +...+.|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999764 22222222110 001234557
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..+|||||||||+|+.. .+.+.||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g~ 108 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLGG 108 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 88999999999999863 23347999999999999998765 788999999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeecccc
Q 040503 304 IAREHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGL 382 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (767)
.... .+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------- 170 (254)
T cd07490 109 TYYS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------- 170 (254)
T ss_pred CCCC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------
Confidence 7432 5556656555554 69999999999998766666778999999997654310000000
Q ss_pred CCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccc
Q 040503 383 LNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLN 462 (767)
Q Consensus 383 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 462 (767)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecC
Q 040503 463 MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTE 542 (767)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 542 (767)
........+.+|.. .....||||+|||.+|+++...
T Consensus 171 -------------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~ 206 (254)
T cd07490 171 -------------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG 206 (254)
T ss_pred -------------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccC
Confidence 00122223334433 2557899999999999986532
Q ss_pred CCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 543 ASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 543 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
.. ....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 207 ~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 207 AN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11 1237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=359.18 Aligned_cols=241 Identities=32% Similarity=0.391 Sum_probs=201.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC------------
Confidence 5789988 999999999999999999998432 12222233221
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 -----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 -----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYAADK 124 (260)
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 1235578899999999999875332 2348999999999999998765 47888999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|++|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 125 ~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------- 186 (260)
T cd07484 125 GAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--------------- 186 (260)
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---------------
Confidence 9999999999873 4456777778888999999999999998877778888999999985432
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+..+.||++|+.. |++||
T Consensus 187 ------------------------------------------------------~~~~~~s~~g~~~--------~~~ap 204 (260)
T cd07484 187 ------------------------------------------------------DKRASFSNYGKWV--------DVSAP 204 (260)
T ss_pred ------------------------------------------------------CCcCCcCCCCCCc--------eEEeC
Confidence 3567889999887 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
|.+|+++.+.. .|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 205 G~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 205 GGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999987652 799999999999999999999999999 99999999999999864
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=362.99 Aligned_cols=207 Identities=29% Similarity=0.372 Sum_probs=167.9
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh---------
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI--------- 290 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~--------- 290 (767)
...+..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45678899999999999986422 22 38999999999999998776 57889999999998
Q ss_pred -hcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecC
Q 040503 291 -HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 291 -~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
.++++|||||||.... ....+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4579999999998732 145677788889999999999999999765 4455677899999986432
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
+.++.||++||.. |
T Consensus 201 ----------------------------------------------------------~~~~~~S~~g~~v--------d 214 (285)
T cd07496 201 ----------------------------------------------------------GQRASYSNYGPAV--------D 214 (285)
T ss_pred ----------------------------------------------------------CCcccccCCCCCC--------C
Confidence 4578899999987 9
Q ss_pred EEeCCCcEEEeecCCCCCC--CCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 529 VTAPGVDIIAAFTEASGPS--PDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
|+|||.+|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 215 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 215 VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999998876532110 00111223478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=359.65 Aligned_cols=250 Identities=27% Similarity=0.330 Sum_probs=181.9
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.+++|+||+||||||||+..|| |...++ .+...+..+
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------------------------~~~~~~~~~------------ 52 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------------------------QVRVVLAPG------------ 52 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------------------------cceeecCCC------------
Confidence 589999999999999999999999888 754311 000011000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||+++
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISL 103 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhc
Confidence 0124567889999999865 47899999999999863 456789999999999
Q ss_pred CCcEEEeccCCCCcc----------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeee
Q 040503 293 GVDVISASLGSIARE----------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTS 362 (767)
Q Consensus 293 gvdVIn~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (767)
+++|||||||..... .....+..++.+|.++|++||+||||++. .+++..|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 999999999986211 12345778888899999999999999874 45677899999999754320
Q ss_pred eEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHH
Q 040503 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQ 442 (767)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 442 (767)
+. ..
T Consensus 178 ------g~------------------~~---------------------------------------------------- 181 (298)
T cd07494 178 ------GA------------------RR---------------------------------------------------- 181 (298)
T ss_pred ------Cc------------------cc----------------------------------------------------
Confidence 00 00
Q ss_pred cCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCC
Q 040503 443 AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDP 522 (767)
Q Consensus 443 ~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 522 (767)
.....+.|++. ..+
T Consensus 182 --------------------------------------------------------------~~~~~~~~~s~----~~~ 195 (298)
T cd07494 182 --------------------------------------------------------------ASSYASGFRSK----IYP 195 (298)
T ss_pred --------------------------------------------------------------ccccccCcccc----cCC
Confidence 00001111111 125
Q ss_pred CcccceE----------------EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCC
Q 040503 523 AIFKPDV----------------TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWS 586 (767)
Q Consensus 523 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (767)
++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6677777 4799998766532100 001124799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc
Q 040503 587 PAAIKSAIMTTARAED 602 (767)
Q Consensus 587 p~~ik~~L~~TA~~~~ 602 (767)
+++||.+|++||+++.
T Consensus 271 ~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 271 PERARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHHHHhCcccC
Confidence 9999999999998763
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=352.15 Aligned_cols=240 Identities=26% Similarity=0.318 Sum_probs=190.0
Q ss_pred eEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 145 VIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 145 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
|+|||||+||+++||+|.+.. ++...+.+... .....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~------------------------~~~~~~~~~~~-----------------~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP------------------------KLVPGWNFVSN-----------------NDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccCc------------------------CccCCccccCC-----------------CCCCCCC
Confidence 689999999999999998630 01111111100 1134678
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSI 304 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~ 304 (767)
.+|||||||||+|+..++ ..+.||||+|+|+.+|++...+ .+...++.++++|+++.+++|||||||..
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~~ 108 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGGS 108 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCCC
Confidence 999999999999986322 2348999999999999998765 47889999999999999999999999987
Q ss_pred Cc-cCcccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeecccc
Q 040503 305 AR-EHLKNTIAIGSFHAMM-NGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGL 382 (767)
Q Consensus 305 ~~-~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 382 (767)
.. ......+..++..+.+ +|++||+||||+|......++..+++|+|||++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------- 163 (242)
T cd07498 109 DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------- 163 (242)
T ss_pred CCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------
Confidence 32 2345667777778888 99999999999998766667778999999996532
Q ss_pred CCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccc
Q 040503 383 LNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLN 462 (767)
Q Consensus 383 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 462 (767)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecC
Q 040503 463 MVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTE 542 (767)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 542 (767)
+.++.||++||.. |++|||.++......
T Consensus 164 --------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~ 191 (242)
T cd07498 164 --------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTG 191 (242)
T ss_pred --------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcc
Confidence 3567899999987 999999999887544
Q ss_pred CCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 543 ASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 543 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.... .......|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 192 ~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 192 RGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2111 11123478899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=360.66 Aligned_cols=279 Identities=27% Similarity=0.340 Sum_probs=201.1
Q ss_pred cCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCC
Q 040503 138 KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN 217 (767)
Q Consensus 138 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (767)
++++|+||+|||||+|||++||+|.+.... . ....++++.....+.
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~---~~~~~~~~~~~~~~~------------------- 47 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------K---TNLFHRKIVRYDSLS------------------- 47 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------c---CccCcccEEEeeccC-------------------
Confidence 578999999999999999999999764210 0 001223333222211
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEE
Q 040503 218 LTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVI 297 (767)
Q Consensus 218 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVI 297 (767)
....|..+|||||||||+|...+.... ..+.||||+|+|+.+|+++..+. .....++..+++++.+.+++||
T Consensus 48 -~~~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vi 119 (293)
T cd04842 48 -DTKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARIS 119 (293)
T ss_pred -CCCCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEE
Confidence 122278999999999999986543211 13489999999999999887642 3567778999999999999999
Q ss_pred EeccCCCCccCcccHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 298 SASLGSIAREHLKNTIAIGSFHAM-M-NGIVSVAAAGNSGPDDG---SVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 298 n~SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|||||..... .......++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 120 n~S~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 120 SNSWGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred eccCCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 9999988432 1233344444443 3 79999999999997665 4556689999999977643100
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
.......++.||++||+. ++++||||+||
T Consensus 194 -------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~Ap 222 (293)
T cd04842 194 -------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAP 222 (293)
T ss_pred -------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECC
Confidence 001135789999999998 89999999999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-----P---DWSPAAIKSAIMTTAR 599 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~sp~~ik~~L~~TA~ 599 (767)
|.+|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 223 G~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 223 GTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999999754200 011122478999999999999999999999985 4 6677899999999984
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=358.05 Aligned_cols=265 Identities=27% Similarity=0.300 Sum_probs=184.8
Q ss_pred ccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCC
Q 040503 137 KKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQ 216 (767)
Q Consensus 137 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 216 (767)
..+++|+||+|||||+|||++||+|.+.. +....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~--------------------------~~~~~~~~----------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD--------------------------ITTKSFVG----------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc--------------------------ccCcccCC-----------------
Confidence 35789999999999999999999997641 11112211
Q ss_pred CCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcE
Q 040503 217 NLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDV 296 (767)
Q Consensus 217 ~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdV 296 (767)
...+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+....+++||+||++.|++|
T Consensus 39 -~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~V 105 (297)
T cd07480 39 -GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADV 105 (297)
T ss_pred -CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCE
Confidence 112467899999999999998633 2347999999999999997665 467778999999999999999
Q ss_pred EEeccCCCCc----------cCcccHHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCccc-----CCC
Q 040503 297 ISASLGSIAR----------EHLKNTIAIGSFHA---------------MMNGIVSVAAAGNSGPDDGSVEN-----VAP 346 (767)
Q Consensus 297 In~SlG~~~~----------~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~p 346 (767)
||||||.... ......++.....+ .++|++||+||||+|........ ..+
T Consensus 106 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~ 185 (297)
T cd07480 106 ISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACP 185 (297)
T ss_pred EEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccc
Confidence 9999998531 11112222222233 67999999999999865333211 123
Q ss_pred ceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEE
Q 040503 347 WILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILI 426 (767)
Q Consensus 347 ~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 426 (767)
++++|+++...
T Consensus 186 ~~~~V~~V~~~--------------------------------------------------------------------- 196 (297)
T cd07480 186 SAMGVAAVGAL--------------------------------------------------------------------- 196 (297)
T ss_pred cccEEEEECCC---------------------------------------------------------------------
Confidence 33333332211
Q ss_pred EecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCC
Q 040503 427 CYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPS 506 (767)
Q Consensus 427 ~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 506 (767)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCC
Q 040503 507 RMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWS 586 (767)
Q Consensus 507 ~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (767)
+....|++..+ ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.++
T Consensus 197 ~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~ 259 (297)
T cd07480 197 GRTGNFSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAG 259 (297)
T ss_pred CCCCCccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccC
Confidence 11112222222 2235789999999999988763 899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCcc
Q 040503 587 PAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPN 630 (767)
Q Consensus 587 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~ 630 (767)
+.+++.+|++........ ..........+|+|++++.
T Consensus 260 ~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 260 GRALAALLQARLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHHHHHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 888888887432221000 1122345678999998875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=352.70 Aligned_cols=244 Identities=20% Similarity=0.192 Sum_probs=176.8
Q ss_pred ccccccCC-CCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCC
Q 040503 133 DSAWKKAR-FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (767)
..+|+... .|+||+|+|||+|||.+||+|.++.. . ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~---~~~------------ 43 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------T---LIS------------ 43 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------c---ccC------------
Confidence 57898754 59999999999999999999986410 0 000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
...+.|+.+|||||||||+|..+ .+| +.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR---------VSNTADAILDAAD 99 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC---------CCCHHHHHHHHHh
Confidence 01145788999999999998731 123 38999999999999975 2234455555554
Q ss_pred ----cCCcEEEeccCCCCcc------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc-------------cCCCce
Q 040503 292 ----DGVDVISASLGSIARE------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE-------------NVAPWI 348 (767)
Q Consensus 292 ----~gvdVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~v 348 (767)
.++.+||||||..... .....+..++.++.++|+++|+||||++....... ...|++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 4578899999986321 12334556777888999999999999986522111 123578
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 8888754321
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
...
T Consensus 190 -----------------------------------------------------------------------------~~~ 192 (277)
T cd04843 190 -----------------------------------------------------------------------------GHT 192 (277)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 013
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----h-CC
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----L-HP 583 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P 583 (767)
++.||++||.. ||.|||++|+++....... ........|..++|||||||||||++|||++ + +|
T Consensus 193 ~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p 261 (277)
T cd04843 193 RLAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGT 261 (277)
T ss_pred cccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCC
Confidence 78999999987 9999999999998764311 0111122457899999999999999999975 3 49
Q ss_pred CCCHHHHHHHHHhccc
Q 040503 584 DWSPAAIKSAIMTTAR 599 (767)
Q Consensus 584 ~~sp~~ik~~L~~TA~ 599 (767)
+|+|+|||++|+.|+.
T Consensus 262 ~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 262 PLTPIEMRELLTATGT 277 (277)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 9999999999999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=346.95 Aligned_cols=250 Identities=29% Similarity=0.389 Sum_probs=191.0
Q ss_pred CceEEEEecccCCCCCCCccCCCCCCCCCCcccc---ccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCC
Q 040503 143 EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGI---CQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLT 219 (767)
Q Consensus 143 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (767)
+||+|||||||||++||+|.+. .|... +..+. ..+....+.. ..+|+.. ....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~-----------~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGI---DDDGNGYVDD---IYGWNFV-----------NNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCc---ccCCCCcccC---CCccccc-----------CCCC
Confidence 6899999999999999999875 23321 11110 0000000000 0011111 1134
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEe
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISA 299 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~ 299 (767)
++.|..+|||||||||+|...++. .+.|+||+|+|+.+|++...+ .+...+++++|+++++.+++|||+
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~ 126 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINN 126 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEe
Confidence 567889999999999999864332 248999999999999998776 488899999999999999999999
Q ss_pred ccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCccc--CCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 300 SLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD---GSVEN--VAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 300 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
|||.... ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 127 S~G~~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------- 186 (259)
T cd07473 127 SWGGGGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------- 186 (259)
T ss_pred CCCCCCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence 9998732 56677788889999999999999998662 22222 34789999985432
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGV 534 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 534 (767)
+.++.||++||. +||+.|||.
T Consensus 187 ----------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~ 207 (259)
T cd07473 187 ----------------------------------------------------DALASFSNYGKK-------TVDLAAPGV 207 (259)
T ss_pred ----------------------------------------------------CCcCcccCCCCC-------CcEEEeccC
Confidence 355678999985 359999999
Q ss_pred cEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 535 DIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
++++..+.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 208 ~~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 208 DILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CeEeccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999966542 7999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=341.48 Aligned_cols=227 Identities=32% Similarity=0.471 Sum_probs=187.6
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||+||+++||+|.+. +.....|.... .....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999764 12222222110 024557
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..+|||||||||++.... ..+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||||||.
T Consensus 39 ~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g~ 106 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLGG 106 (229)
T ss_pred CCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 889999999999997532 1348999999999999998776 3677899999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccc
Q 040503 304 IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKG 381 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (767)
.. ....+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 107 ~~---~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 107 PS---DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 63 234566677788899999999999999776554 6678999999986532
Q ss_pred cCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccc
Q 040503 382 LLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVL 461 (767)
Q Consensus 382 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 461 (767)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeec
Q 040503 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFT 541 (767)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 541 (767)
+.++.||++|+.. |+.|||.+|+++++
T Consensus 160 ---------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~ 186 (229)
T cd07477 160 ---------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYP 186 (229)
T ss_pred ---------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecC
Confidence 3556789999976 99999999999987
Q ss_pred CCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 542 EASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.. .|..++|||||||+|||++|||+|++|.++|++||++|++|
T Consensus 187 ~~-------------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 187 NN-------------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred CC-------------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 63 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=342.07 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=120.6
Q ss_pred CCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCC
Q 040503 142 GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTG 221 (767)
Q Consensus 142 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (767)
+++|+|||||||||++||+|.++ +...+.|....... .......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----------~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----------NKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----------ccCCCCC
Confidence 78999999999999999999753 22222222210000 0001123
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCC---CCCChhHHHHHHHHhhhcCCcEEE
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN---DSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~---~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
.|..||||||||||+ |+||+|+|+.+|+++..+.. ..++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578899999999996 56999999999999865421 135678899999999999999999
Q ss_pred eccCCCCcc---CcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-Cc--ccCCCceEEeccccC
Q 040503 299 ASLGSIARE---HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SV--ENVAPWILTVGASTT 356 (767)
Q Consensus 299 ~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~ 356 (767)
||||..... .....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 999987421 12567888888999999999999999997654 33 245689999999654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=331.96 Aligned_cols=222 Identities=24% Similarity=0.279 Sum_probs=174.8
Q ss_pred ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCC
Q 040503 144 DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRD 223 (767)
Q Consensus 144 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 223 (767)
||+|||||||||++||+|.+.- ...+.+..+ . .........|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~-~-----------~~~~~~~~~d 42 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDL-E-----------IIVVSAEGGD 42 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------ccccccccc-c-----------cccCCCCCCC
Confidence 7999999999999999998641 111111100 0 0001234567
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..||||||||||++. +|+++|+.+|+++..+ .+..+.+++||+|++++|++|||||||.
T Consensus 43 ~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G~ 101 (222)
T cd07492 43 KDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLGG 101 (222)
T ss_pred CCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 899999999999865 6999999999998776 4888999999999999999999999998
Q ss_pred CCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccC
Q 040503 304 IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLL 383 (767)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 383 (767)
... .....+..++.++.++|+++|+||||++..... ++..+++|+||+.+.+.
T Consensus 102 ~~~-~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~------------------------- 154 (222)
T cd07492 102 PGD-RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD------------------------- 154 (222)
T ss_pred CCC-CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC-------------------------
Confidence 742 233556777888889999999999999865333 56678999999854321
Q ss_pred CCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccc
Q 040503 384 NDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNM 463 (767)
Q Consensus 384 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~ 463 (767)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCC
Q 040503 464 VHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEA 543 (767)
Q Consensus 464 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 543 (767)
.. +.+++. +|+.|||.+|+++.+..
T Consensus 155 --------------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~ 179 (222)
T cd07492 155 --------------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG 179 (222)
T ss_pred --------------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC
Confidence 01 111333 49999999999988763
Q ss_pred CCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 544 SGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 544 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 -------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=350.43 Aligned_cols=274 Identities=32% Similarity=0.475 Sum_probs=206.5
Q ss_pred EEEEecccCCCCCCCcc-CCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCC
Q 040503 146 IIANVDSGVWPESKSFA-DDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224 (767)
Q Consensus 146 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 224 (767)
+|||||+|||++||+|. .+ + ...++.+.+.|.++. .......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~--------------~~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN--------------PNPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB--------------STTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC--------------CCcCccccC
Confidence 69999999999999998 32 0 011122233333321 113355678
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh-hcCCcEEEeccCC
Q 040503 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI-HDGVDVISASLGS 303 (767)
Q Consensus 225 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~-~~gvdVIn~SlG~ 303 (767)
.+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G~ 114 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFGS 114 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEEB
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCccccccccc
Confidence 899999999999986 2 11 12338999999999999977664 67888999999999 8899999999988
Q ss_pred C--C-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cccCCCceEEeccccCcceeeeeEEecCceeEeeeee
Q 040503 304 I--A-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS---VENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377 (767)
Q Consensus 304 ~--~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 377 (767)
. . .....+.+..+++.+.++|+++|+||||+|+.... .+...+++|+||+++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------- 174 (282)
T PF00082_consen 115 NSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------- 174 (282)
T ss_dssp EESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------
T ss_pred cccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc--------------------
Confidence 2 1 22234456666778889999999999999876553 33445888999985421
Q ss_pred eccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCC
Q 040503 378 SQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESG 457 (767)
Q Consensus 378 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~ 457 (767)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEE
Q 040503 458 NKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDII 537 (767)
Q Consensus 458 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 537 (767)
+.++.||++|+.. .++++||||+|||.+|+
T Consensus 175 -------------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~ 204 (282)
T PF00082_consen 175 -------------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNIL 204 (282)
T ss_dssp -------------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEE
T ss_pred -------------------------------------------------ccccccccccccc-ccccccccccccccccc
Confidence 3567899997543 27899999999999999
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCC
Q 040503 538 AAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617 (767)
Q Consensus 538 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 617 (767)
++++.... ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||++....+ ...
T Consensus 205 ~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~ 265 (282)
T PF00082_consen 205 SAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEG 265 (282)
T ss_dssp EEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSS
T ss_pred cccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCC
Confidence 98876421 25888999999999999999999999999999999999999999875211 233
Q ss_pred CCCccCCCccCccCcCC
Q 040503 618 TPFAYGAGHVNPNSALD 634 (767)
Q Consensus 618 ~~~~~G~G~vd~~~A~~ 634 (767)
....||||++|+.+|++
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 45678999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=345.93 Aligned_cols=208 Identities=29% Similarity=0.307 Sum_probs=154.8
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++|||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin 111 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVIN 111 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEE
Confidence 3456789999999999998742 14999999999999998776 35888999999999999999999
Q ss_pred eccCCCCccC--------cccHHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------------cccCCCce
Q 040503 299 ASLGSIAREH--------LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS----------------------VENVAPWI 348 (767)
Q Consensus 299 ~SlG~~~~~~--------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~v 348 (767)
||||...... ....+..++..+.++|++||+||||+|..... .+...+++
T Consensus 112 ~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v 191 (294)
T cd07482 112 LSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNV 191 (294)
T ss_pred eCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCce
Confidence 9999863211 12346667777889999999999999965321 11223444
Q ss_pred EEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEe
Q 040503 349 LTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICY 428 (767)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~ 428 (767)
|+|||++
T Consensus 192 i~Vga~~------------------------------------------------------------------------- 198 (294)
T cd07482 192 ITVSATD------------------------------------------------------------------------- 198 (294)
T ss_pred EEEEeeC-------------------------------------------------------------------------
Confidence 5554432
Q ss_pred cCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCc
Q 040503 429 GARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM 508 (767)
Q Consensus 429 ~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (767)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (294)
T cd07482 199 ----------------------------------------------------------------------------NNGN 202 (294)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2356
Q ss_pred eecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCC---CCC------CCCCCCccceeeecccccchhhHHHHHHHHH
Q 040503 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASG---PSP------DETHKRRIPYIMMSGTSMSCPHVAGIVGLVK 579 (767)
Q Consensus 509 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 579 (767)
++.||++|+.. +|++|||.++......... ... .......+.|..++|||||||+|||++|||+
T Consensus 203 ~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~ 275 (294)
T cd07482 203 LSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALII 275 (294)
T ss_pred cCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHH
Confidence 77899998754 4999999998532211100 000 0001234578999999999999999999999
Q ss_pred HhCCCCCH-HHHHHHHHhc
Q 040503 580 TLHPDWSP-AAIKSAIMTT 597 (767)
Q Consensus 580 q~~P~~sp-~~ik~~L~~T 597 (767)
|++|.+++ .|||++|++|
T Consensus 276 ~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 276 DKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHCCCCCcHHHHHHHHhhC
Confidence 99999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=348.33 Aligned_cols=247 Identities=20% Similarity=0.214 Sum_probs=181.7
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|+|||||||+.||+|.+.... ...+.|.....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~---------- 74 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP---------- 74 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC----------
Confidence 68999999999999999999999999999764110 01111221100
Q ss_pred CCCCCCCCC--CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTG--RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~--~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
...+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... .....+..++.++.
T Consensus 75 -----~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~ 136 (297)
T cd04059 75 -----DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNP 136 (297)
T ss_pred -----CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHHhccc
Confidence 1112 2788999999999999853221 23899999999999998754 33445566666655
Q ss_pred hcCCcEEEeccCCCCcc----CcccHHHHHHHHHHh-----CCCEEEEecCCCCCCCCC--c--ccCCCceEEeccccCc
Q 040503 291 HDGVDVISASLGSIARE----HLKNTIAIGSFHAMM-----NGIVSVAAAGNSGPDDGS--V--ENVAPWILTVGASTTD 357 (767)
Q Consensus 291 ~~gvdVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~~p~vitVgA~~~~ 357 (767)
+ .++|||||||..... ........++.++.+ +|++||+||||+|..... . ....|++|+|||++.+
T Consensus 137 ~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~ 215 (297)
T cd04059 137 D-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN 215 (297)
T ss_pred C-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC
Confidence 4 469999999987321 122334455555553 699999999999973222 1 1346889999985432
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHH
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKG 437 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 437 (767)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCC
Q 040503 438 QWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGP 517 (767)
Q Consensus 438 ~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 517 (767)
+.++.||++|+
T Consensus 216 ---------------------------------------------------------------------g~~~~~s~~g~ 226 (297)
T cd04059 216 ---------------------------------------------------------------------GVRASYSEVGS 226 (297)
T ss_pred ---------------------------------------------------------------------CCCcCCCCCCC
Confidence 45678999999
Q ss_pred CCCCCCcccceEEeCCCc-------EEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHH
Q 040503 518 NMIDPAIFKPDVTAPGVD-------IIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAI 590 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~i 590 (767)
.. ++.|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.||
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 88 99999987 666654410 126788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 040503 591 KSAIMTTAR 599 (767)
Q Consensus 591 k~~L~~TA~ 599 (767)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999984
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=332.97 Aligned_cols=244 Identities=25% Similarity=0.309 Sum_probs=187.0
Q ss_pred CCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCC
Q 040503 141 FGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTT 220 (767)
Q Consensus 141 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (767)
+|+||+|+|||+||+++||+|.+.... ...+..... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~~-------------~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVND-------------AGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------ccccccccc-------------ccCCC
Confidence 699999999999999999999875110 000000000 00123
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEec
Q 040503 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISAS 300 (767)
Q Consensus 221 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~S 300 (767)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||||
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 110 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINNS 110 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEcc
Confidence 457889999999999998633 34489999999999999987531 2677889999999999999999999
Q ss_pred cCCCCcc------------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc---------cCCCceEEeccccCcce
Q 040503 301 LGSIARE------------HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE---------NVAPWILTVGASTTDRE 359 (767)
Q Consensus 301 lG~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgA~~~~~~ 359 (767)
||..... .....+...+..+.++|++||+||||++....... ...+++|+||+++.+.
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~- 189 (267)
T cd04848 111 WGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG- 189 (267)
T ss_pred CCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-
Confidence 9987422 14556677777888999999999999986543332 2357889999865432
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceec--ccCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAF--FTSRGP 517 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp 517 (767)
.... ||++|+
T Consensus 190 --------------------------------------------------------------------~~~~~~~s~~~~ 201 (267)
T cd04848 190 --------------------------------------------------------------------TIASYSYSNRCG 201 (267)
T ss_pred --------------------------------------------------------------------Ccccccccccch
Confidence 1222 477776
Q ss_pred CCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 518 NMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.. ..++++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++|
T Consensus 202 ~~-----~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~t 265 (267)
T cd04848 202 VA-----ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTT 265 (267)
T ss_pred hh-----hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 43 24579999999999887311 278899999999999999999999999999999999999999
Q ss_pred cc
Q 040503 598 AR 599 (767)
Q Consensus 598 A~ 599 (767)
|+
T Consensus 266 A~ 267 (267)
T cd04848 266 AT 267 (267)
T ss_pred cC
Confidence 84
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=322.69 Aligned_cols=360 Identities=24% Similarity=0.319 Sum_probs=261.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccce------EEEEcceeeeEEEEcC-----HHHHHH
Q 040503 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSI------FHSYGRFINGFGAVLE-----EEHAKQ 95 (767)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i------~~~y~~~~~g~~~~~~-----~~~~~~ 95 (767)
+..|||.|+..-.. ..++.++++.+....-..=++ -..|-.-|.-+-++-. .-++++
T Consensus 49 e~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 45799999986543 345566666554222111111 1222223333333222 235799
Q ss_pred hhCCCCeEEEEeCcccccCcc------------CCCccc-CCc-------------cCCC-----------CCCcccccc
Q 040503 96 LENHPGVVSVFPDEGAKLHTT------------RSWDFL-GLE-------------KDNF-----------IPPDSAWKK 138 (767)
Q Consensus 96 l~~~~~V~~v~~~~~~~~~~~------------~s~~~~-g~~-------------~~~~-----------~~~~~~~~~ 138 (767)
|..+|.|+.|.|.+.+..-.. +.-.++ |.. ...+ -..+-+|..
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 999999999999887643210 000000 000 0000 012679999
Q ss_pred CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
|++|++|+|||.|||+.-+||.|+.- .....+.+ .
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------E 231 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------E 231 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------c
Confidence 99999999999999999999999742 11111111 1
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
..-.|..||||.|||+|||.. ...|.||+++|++.|||.+.. -...+..++|++||+....||+|
T Consensus 232 ~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvLN 296 (1033)
T KOG4266|consen 232 DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVLN 296 (1033)
T ss_pred cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceEe
Confidence 234478999999999999874 236889999999999998776 47889999999999999999999
Q ss_pred eccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCC--ceEEeccccCcceeeeeEEecCceeEeeee
Q 040503 299 ASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAP--WILTVGASTTDREFTSYVTLGNKMVIKGAS 376 (767)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 376 (767)
+|+|++ ++.+.++-.-+..+..++|++|.|+||+||-.++..+++. .||.||..+-
T Consensus 297 LSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf-------------------- 354 (1033)
T KOG4266|consen 297 LSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF-------------------- 354 (1033)
T ss_pred eccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc--------------------
Confidence 999998 4667777666667888999999999999999999888753 5666665321
Q ss_pred eeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCC
Q 040503 377 VSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKES 456 (767)
Q Consensus 377 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~ 456 (767)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC----CCCCcccceEEeC
Q 040503 457 GNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM----IDPAIFKPDVTAP 532 (767)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~AP 532 (767)
.+.++.|||||-+. ...+|+||||++-
T Consensus 355 -------------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 355 -------------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -------------------------------------------------cchhhhhccCCcceeecCCcccccCCceEee
Confidence 36899999999654 2478999999999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
|.+|...... .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9998876544 2778899999999999999999976 334578999999999999987532
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
.-+.||+|++|+.++++-
T Consensus 449 ---------NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 449 ---------NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred ---------chhhccCcchhHHHHHHH
Confidence 247899999999988763
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=288.66 Aligned_cols=192 Identities=19% Similarity=0.211 Sum_probs=141.9
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHh--hhcCCcEEE
Q 040503 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA--IHDGVDVIS 298 (767)
Q Consensus 221 ~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a--~~~gvdVIn 298 (767)
..|..||||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VIN 90 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKIIN 90 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEEE
Confidence 447899999999999997 3567999998765522 1233466778887 667899999
Q ss_pred eccCCCCccC------cccHHHHHHHHHHhC-CCEEEEecCCCCCCCCC-----cccCCCceEEeccccCcceeeeeEEe
Q 040503 299 ASLGSIAREH------LKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDGS-----VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 299 ~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
||||...... ..+.+..+++.+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 91 mS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------- 163 (247)
T cd07488 91 HSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------- 163 (247)
T ss_pred eCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-------
Confidence 9999873221 234566777777666 99999999999975322 2345688999999764320
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCC--CCCCCCCCc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSR--GPNMIDPAI 524 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~ 524 (767)
....+.||++ +|+. +++
T Consensus 164 -----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~ 182 (247)
T cd07488 164 -----------------------------------------------------------RFFASDVSNAGSEINS--YGR 182 (247)
T ss_pred -----------------------------------------------------------cceecccccccCCCCC--CCC
Confidence 0123445554 4544 788
Q ss_pred ccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCH------HHHHHHHHhc
Q 040503 525 FKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP------AAIKSAIMTT 597 (767)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp------~~ik~~L~~T 597 (767)
.||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 183 ~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 183 RKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999999999998 22 26889999999999999999999999887764 4566666655
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-31 Score=272.08 Aligned_cols=197 Identities=35% Similarity=0.492 Sum_probs=158.6
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh-hcCCcEEE
Q 040503 220 TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI-HDGVDVIS 298 (767)
Q Consensus 220 ~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~-~~gvdVIn 298 (767)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 45578899999999999886332 127999999999999988765 467889999999999 89999999
Q ss_pred eccCCCCccCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CcccCCCceEEeccccCcceeeeeEEecCceeEee
Q 040503 299 ASLGSIAREHLKNTIAIGSFHAMMN-GIVSVAAAGNSGPDDG---SVENVAPWILTVGASTTDREFTSYVTLGNKMVIKG 374 (767)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g 374 (767)
||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999987432 345567777778777 9999999999997765 3566789999999966432
Q ss_pred eeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccC
Q 040503 375 ASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 375 ~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCce-ecccCCCCCCCCCCcccceEEeCC
Q 040503 455 ESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMM-AFFTSRGPNMIDPAIFKPDVTAPG 533 (767)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~Gp~~~~~~~~KPDI~APG 533 (767)
.. ..++++|+ |||+.|||
T Consensus 170 -----------------------------------------------------~~~~~~~~~~~--------~~~~~apg 188 (241)
T cd00306 170 -----------------------------------------------------TPASPSSNGGA--------GVDIAAPG 188 (241)
T ss_pred -----------------------------------------------------CccCCcCCCCC--------CceEEeCc
Confidence 11 13444444 56999999
Q ss_pred CcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 040503 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597 (767)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 597 (767)
.++...... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 189 ~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999875111 12389999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=293.76 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=180.6
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEEeccCC
Q 040503 224 EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS 303 (767)
Q Consensus 224 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~ 303 (767)
..-|||||||||+|+..... ...|+||+|+|+.+++.+..- ++.-+...+.+|+..++++++||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 34599999999999985543 347889999999999966442 113455678999999999999999999998
Q ss_pred CC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccC---CCceEEeccccCcceeeeeEEecCceeEeeeeeec
Q 040503 304 IA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENV---APWILTVGASTTDREFTSYVTLGNKMVIKGASVSQ 379 (767)
Q Consensus 304 ~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (767)
.. .+.....++..-+.+.++|+++|+||||+||...+++++ ...+|.|||.-.....
T Consensus 380 ~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------- 440 (1304)
T KOG1114|consen 380 DAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------- 440 (1304)
T ss_pred cCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH-------------------
Confidence 73 222333444444444589999999999999998887754 3478888884321100
Q ss_pred cccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcc
Q 040503 380 KGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNK 459 (767)
Q Consensus 380 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 459 (767)
...|.++
T Consensus 441 ------~a~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ------QAEYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred ------Hhhhhhh-------------------------------------------------------------------
Confidence 0000000
Q ss_pred cccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEe
Q 040503 460 VLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAA 539 (767)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa 539 (767)
.+-......+|||||+. ||.+--.|.|||+.|.+-
T Consensus 448 -------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV 482 (1304)
T KOG1114|consen 448 -------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV 482 (1304)
T ss_pred -------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC
Confidence 00124578899999999 999999999999998663
Q ss_pred ecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCCCcccCCCCCC
Q 040503 540 FTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGE 615 (767)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 615 (767)
|... ...-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++++.
T Consensus 483 -P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----------- 540 (1304)
T KOG1114|consen 483 -PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----------- 540 (1304)
T ss_pred -chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-----------
Confidence 2111 01567899999999999999999975 567899999999999999987533
Q ss_pred CCCCCccCCCccCccCcCC
Q 040503 616 KATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 616 ~~~~~~~G~G~vd~~~A~~ 634 (767)
.+|.+|.|++++.+|.+
T Consensus 541 --d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 --DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred --chhccCcceeehhHHHH
Confidence 46899999999999985
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=240.20 Aligned_cols=249 Identities=29% Similarity=0.415 Sum_probs=187.1
Q ss_pred cccccc--CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCC
Q 040503 133 DSAWKK--ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNP 210 (767)
Q Consensus 133 ~~~~~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (767)
...|.. +.+|+||+|+|||+||+..||+|.+... ....|.+.
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~---------- 173 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG---------- 173 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC----------
Confidence 467777 8999999999999999999999986410 00122211
Q ss_pred CCCCCCCCC-CCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCC-CCCCCCChhHHHHHHHH
Q 040503 211 DAVIPQNLT-TGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKP-NENDSCASADILSAYDL 288 (767)
Q Consensus 211 ~~~~~~~~~-~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-~~~~~~~~~~i~~aid~ 288 (767)
... ...|..+|||||+|++++.... ......|+||+++++.+|++... + ....++++++|++
T Consensus 174 ------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g---~~~~~~~~~~i~~ 237 (508)
T COG1404 174 ------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG---SGELSDVAEGIEG 237 (508)
T ss_pred ------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC---cccHHHHHHHHHH
Confidence 011 2568999999999999984211 11224899999999999999876 4 5778888999999
Q ss_pred hhhcC--CcEEEeccCCCCccCcccHHHHHHHHHHhCC-CEEEEecCCCCCCCCC----cccCC--CceEEeccccCcce
Q 040503 289 AIHDG--VDVISASLGSIAREHLKNTIAIGSFHAMMNG-IVSVAAAGNSGPDDGS----VENVA--PWILTVGASTTDRE 359 (767)
Q Consensus 289 a~~~g--vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgA~~~~~~ 359 (767)
++..+ +++||||+|..........+..++..++..| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--- 314 (508)
T COG1404 238 AANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--- 314 (508)
T ss_pred HHhcCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---
Confidence 99999 9999999998511223455666667777777 9999999999866521 11111 35666666432
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 14677889999741
Q ss_pred CCCCcccceEEeCCCcEEE-----eecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCC-CCCHHHHHHH
Q 040503 520 IDPAIFKPDVTAPGVDIIA-----AFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHP-DWSPAAIKSA 593 (767)
Q Consensus 520 ~~~~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~sp~~ik~~ 593 (767)
..+++|||.+|.+ .+++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 1299999999998 444421 1499999999999999999999999999 8999999999
Q ss_pred HHhccc
Q 040503 594 IMTTAR 599 (767)
Q Consensus 594 L~~TA~ 599 (767)
+..++.
T Consensus 392 ~~~~~~ 397 (508)
T COG1404 392 IVTTAG 397 (508)
T ss_pred Hhhccc
Confidence 888876
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=201.67 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=100.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|.++++|++|+++|+|.||||-||+++.+ .| --..++|...
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n----------------------yn--aeasydfssn------------ 194 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YN--AEASYDFSSN------------ 194 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cC--ceeecccccC------------
Confidence 67999999999999999999999999999753 00 1112233221
Q ss_pred CCCCCCCCCCC--CCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTGRD--EEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~~D--~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
++-++....| .+.|||.|||-+++...++ ++| .|||.+.++..+|+++. -...|+++|-...-
T Consensus 195 -dpfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmgh 259 (629)
T KOG3526|consen 195 -DPFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGH 259 (629)
T ss_pred -CCCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCC
Confidence 1111222222 5789999999888776543 355 59999999999999875 44666666543322
Q ss_pred h-cCCcEEEeccCCCCc-cCcccH---HHHHHHHHHh-----CCCEEEEecCCCCCC
Q 040503 291 H-DGVDVISASLGSIAR-EHLKNT---IAIGSFHAMM-----NGIVSVAAAGNSGPD 337 (767)
Q Consensus 291 ~-~gvdVIn~SlG~~~~-~~~~~~---~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 337 (767)
+ ...+|.+-|||.... ...+.+ ..+|+-+-++ .|-+.|.|.|..|.+
T Consensus 260 ep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 260 EPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2 348999999998732 222222 2223333332 456888888887743
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=180.66 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=79.9
Q ss_pred CcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc---CCcEEEeccCCCCcc---CcccHHHHHHHHHHhCC
Q 040503 251 GTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD---GVDVISASLGSIARE---HLKNTIAIGSFHAMMNG 324 (767)
Q Consensus 251 g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~---gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~G 324 (767)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 345899999999999997642 34577788888877 999999999987422 23456777888899999
Q ss_pred CEEEEecCCCCCCCCC-----------cccCCCceEEeccccCcc
Q 040503 325 IVSVAAAGNSGPDDGS-----------VENVAPWILTVGASTTDR 358 (767)
Q Consensus 325 i~vV~AAGN~G~~~~~-----------~~~~~p~vitVgA~~~~~ 358 (767)
|+||+||||+|..... .++..|+|++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999999976532 345689999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=104.46 Aligned_cols=122 Identities=43% Similarity=0.703 Sum_probs=96.2
Q ss_pred EEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCC--chhHHHHHHH
Q 040503 364 VTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGAR--YGDEKGQWAA 441 (767)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~--~~~~~~~~~~ 441 (767)
+.+||++++.|++++.... ..+++++..... .......|.+..++..+++||||||+++. .+.++..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~----~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL----KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC----CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6789999999999995331 356777633211 22345789998888899999999999977 5678999999
Q ss_pred HcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEE
Q 040503 442 QAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTAS 493 (767)
Q Consensus 442 ~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (767)
++||.|+|++++.............+|.+.|...+|+.|++|++++.+++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999887644333333568999999999999999999998776654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=107.33 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=83.3
Q ss_pred cccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccccc-ccccccEEEeehhhHHHHHHHHhc
Q 040503 409 ECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVLN-MVHHLPTAHLNYTDGESVYAYINS 486 (767)
Q Consensus 409 ~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~ 486 (767)
.|...++...+++|||+||.|+. .+.+|..+++++||.|+|++++......... ....+|.+.|+..+|+.|++|+++
T Consensus 35 ~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 35 LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC
Confidence 35555566678999999999998 8899999999999999999998754322221 134789999999999999999988
Q ss_pred CCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 487 TQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
+++|.+..+.. ..+.+.++.||||||+.
T Consensus 115 ----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 45555555444 45678899999999964
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-09 Score=89.86 Aligned_cols=78 Identities=32% Similarity=0.508 Sum_probs=57.9
Q ss_pred CEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCc----cccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEE
Q 040503 29 PYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSV----EEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVS 104 (767)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~ 104 (767)
+|||+|++.... ......+.+++.+++.+. .....++.+.|+..++||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 599999997653 334667777777554321 23467899999999999999999999999999999999
Q ss_pred EEeCcccccC
Q 040503 105 VFPDEGAKLH 114 (767)
Q Consensus 105 v~~~~~~~~~ 114 (767)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6e-07 Score=99.38 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=97.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
...|..+++|+++.|+|+|.|+...||+.... .-..+..++...-+
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~~---------- 68 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHDN---------- 68 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCCC----------
Confidence 57999999999999999999999999998753 11222222222110
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH- 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~- 291 (767)
.+..-.+......|||-|++-.+....+.. -..|+++++++..++++...- .+...+......
T Consensus 69 -~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 69 -DPEPRCDGTNENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCV-------SDAVEAPSLGFGP 132 (431)
T ss_pred -CcccccCCCCccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeec-------ccceecccccCCC
Confidence 111112223468899999999998752211 236899999999999986321 122222222222
Q ss_pred cCCcEEEeccCCCCc----cCcccHHHHHHHHH-----HhCCCEEEEecCCCCCCC
Q 040503 292 DGVDVISASLGSIAR----EHLKNTIAIGSFHA-----MMNGIVSVAAAGNSGPDD 338 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~----~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 338 (767)
.-+++-+.|||.... .........++..+ ..+|-+.|++.||.|...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 348999999998731 11112223333332 256789999999988543
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-07 Score=82.68 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=71.5
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc---ccc--ccccccEEEeehhhHHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK---VLN--MVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 480 (767)
...|.+..+...+++|||+||.|+. .+.+|..+++++||.++|++|+...... ... ....+|.+.|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4779988888788999999999999 8999999999999999999997663211 111 345799999999999999
Q ss_pred HHHHhcCCCceEE
Q 040503 481 YAYINSTQNPTAS 493 (767)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (767)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887665443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.9e-07 Score=80.86 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=69.9
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcccc----cccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVL----NMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+.... .+++|||+||.|+. .+..|..+++++||.|+|++++........ .....+|.+.|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888774 45999999999988 888999999999999999998876422211 1234799999999999999
Q ss_pred HHHHhcCCCceEE
Q 040503 481 YAYINSTQNPTAS 493 (767)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (767)
++|++.+...+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999987665543
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=82.22 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred ccCcccCCCC--CCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCc-cc---ccccccccEEEeehhhHH
Q 040503 406 DASECKKGSI--DPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGN-KV---LNMVHHLPTAHLNYTDGE 478 (767)
Q Consensus 406 ~~~~c~~~~~--~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 478 (767)
....|.+... ++.++.|+|+|+.||. .|.+|..+++++||.++|+|++...+. .+ ......+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998876 6678999999999999 999999999999999999999986221 22 112247899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 040503 479 SVYAYINSTQNPTASM 494 (767)
Q Consensus 479 ~l~~~~~~~~~~~~~i 494 (767)
.|++++..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999887766653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-07 Score=80.96 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=63.3
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC----CCcccccccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE----SGNKVLNMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+..+...+++||||||.||. .+.+|..+++++||.|+|+++... ...........+|+++|+..+|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 34567777788889999999999999 999999999999999999999221 1222334457899999999999999
Q ss_pred HHHH
Q 040503 481 YAYI 484 (767)
Q Consensus 481 ~~~~ 484 (767)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=78.25 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--cc--cccccccEEEeehhhHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--VL--NMVHHLPTAHLNYTDGESV 480 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 480 (767)
....|.+..+.+.+++|||+|+.||. +|.+|..+++.+||.++|++|+...... .. .....||+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 35779999888888999999999999 9999999999999999999998753111 11 1335789999999999999
Q ss_pred HHHHhc
Q 040503 481 YAYINS 486 (767)
Q Consensus 481 ~~~~~~ 486 (767)
++.+..
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 988764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=77.40 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=70.7
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCC-cccc---c----ccccccEEEeehhhH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESG-NKVL---N----MVHHLPTAHLNYTDG 477 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~g 477 (767)
...|.+... ..+++|+|+|+.||. .|.+|..+++++||.++|++++.... .... . ....||.++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 567899999999999 99999999999999999999986531 1111 1 234799999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 040503 478 ESVYAYINSTQNPTASM 494 (767)
Q Consensus 478 ~~l~~~~~~~~~~~~~i 494 (767)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988777655
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=79.99 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=70.8
Q ss_pred ccCcccCCC--CCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc--c----cccccccEEEeehhh
Q 040503 406 DASECKKGS--IDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV--L----NMVHHLPTAHLNYTD 476 (767)
Q Consensus 406 ~~~~c~~~~--~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 476 (767)
....|.+.. +...+++|||+||.|+. .+.+|..+++++||.|+|++++....... . .....+|.+.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 456798887 77788999999999998 88999999999999999999987632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 040503 477 GESVYAYINSTQNPTA 492 (767)
Q Consensus 477 g~~l~~~~~~~~~~~~ 492 (767)
|+.|+.|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=95.75 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=58.5
Q ss_pred cccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcC-CcEEEeccCCCC---ccC--cccHHHHHHHHHHhCCC
Q 040503 252 TAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG-VDVISASLGSIA---REH--LKNTIAIGSFHAMMNGI 325 (767)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~g-vdVIn~SlG~~~---~~~--~~~~~~~a~~~a~~~Gi 325 (767)
...-+||+|+|..|-. +. .....+..|+++-...= --+|-.||+... ... .-+.+..-.+.|..+||
T Consensus 287 ~s~A~AP~A~I~lvva--p~-----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEc--CC-----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 3466799999999876 21 23333334443322221 133445666541 111 33445555667889999
Q ss_pred EEEEecCCCCCCCCC--------cccCCCceEEecc
Q 040503 326 VSVAAAGNSGPDDGS--------VENVAPWILTVGA 353 (767)
Q Consensus 326 ~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 353 (767)
.+++|+|.+|....+ .++.+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865543 2245799999997
|
|
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=77.43 Aligned_cols=85 Identities=25% Similarity=0.296 Sum_probs=67.9
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCC-----ccc--cc-----ccccccEEEee
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESG-----NKV--LN-----MVHHLPTAHLN 473 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~-----~~~--~~-----~~~~~p~~~i~ 473 (767)
...|.+... +.+++|||+|+.||. .|.+|.++++++||.++|++|+.... ... .. +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 556899999999999 99999999999999999999876532 111 11 23578999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 040503 474 YTDGESVYAYINSTQNPTA 492 (767)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (767)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988765544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=76.80 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=68.8
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--c--ccccccccEEEeehhhHHHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--V--LNMVHHLPTAHLNYTDGESVY 481 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~ 481 (767)
...|.+..+ +.+++|||+|+.|+. .+.+|.++++++||.++|+||+...+.. . ......+|.+.|+..+|+.|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 346887655 357999999999999 8999999999999999999998732211 1 112457999999999999999
Q ss_pred HHHhcCCCceEE
Q 040503 482 AYINSTQNPTAS 493 (767)
Q Consensus 482 ~~~~~~~~~~~~ 493 (767)
..+..+.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999988776654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=73.54 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=67.8
Q ss_pred cCcccCCCCC--CC----CccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc-----------cccccccc
Q 040503 407 ASECKKGSID--PA----KVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV-----------LNMVHHLP 468 (767)
Q Consensus 407 ~~~c~~~~~~--~~----~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-----------~~~~~~~p 468 (767)
...|.+.... +. ...++|+|++||. .|.+|..+++++||.++|++|+....... ......+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 3788999999999 99999999999999999999986532110 11233699
Q ss_pred EEEeehhhHHHHHHHHhcCCCceEE
Q 040503 469 TAHLNYTDGESVYAYINSTQNPTAS 493 (767)
Q Consensus 469 ~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (767)
+++|+..+|+.|++.+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988766543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.8e-06 Score=75.95 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCCCCCccceEEEEecCC-c-----hhHHHHHHHHcCceEEEEeccC--CCC-cccccc---cccccEEEeehhhHHHHH
Q 040503 414 SIDPAKVQGKILICYGAR-Y-----GDEKGQWAAQAGAVGMILVSSK--ESG-NKVLNM---VHHLPTAHLNYTDGESVY 481 (767)
Q Consensus 414 ~~~~~~~~gkivl~~~g~-~-----~~~~~~~~~~~G~~g~i~~~~~--~~~-~~~~~~---~~~~p~~~i~~~~g~~l~ 481 (767)
++.+.+++|||+|++||. . |.+|.++++++||.|+|+||+. ... .....+ ...+|++.|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 344667999999999998 7 9999999999999999999997 321 112222 358999999999999999
Q ss_pred HHHhcC
Q 040503 482 AYINST 487 (767)
Q Consensus 482 ~~~~~~ 487 (767)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=75.82 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=67.2
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcccc------cccccccEEEeehhhHHH
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVL------NMVHHLPTAHLNYTDGES 479 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 479 (767)
...|.+.. .+++|+|+|+.||. .|.+|..+++++||.++|+||+........ .....||.+.|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 36899999999999 999999999999999999998765321111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 040503 480 VYAYINSTQNPTA 492 (767)
Q Consensus 480 l~~~~~~~~~~~~ 492 (767)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998766544
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=73.30 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc-ccccccccEEEeehhhHHHHHHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAY 483 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~ 483 (767)
....|.+...+..+++|||+|+.||. .+.+|..+++++||.++|+|++....... ..+...+|.+.+ ..+|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 45789987666668999999999999 99999999999999999999887542211 122234565655 9999999999
Q ss_pred HhcCCCceEE
Q 040503 484 INSTQNPTAS 493 (767)
Q Consensus 484 ~~~~~~~~~~ 493 (767)
+..+...+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9877665443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=71.62 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=64.5
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--c----ccccccccEEEeehhhHH
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--V----LNMVHHLPTAHLNYTDGE 478 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~----~~~~~~~p~~~i~~~~g~ 478 (767)
....|.+. +..+++|||+|+.||. .|.+|..+++++||.++|++|+...... . ......+|++.|+..+|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45789766 5578999999999999 9999999999999999999987653211 1 122347999999999999
Q ss_pred HHHHHHhcC
Q 040503 479 SVYAYINST 487 (767)
Q Consensus 479 ~l~~~~~~~ 487 (767)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 998877653
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=73.17 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=68.1
Q ss_pred cCcccCCCCCC---CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc-ccc-----ccccccEEEeehhh
Q 040503 407 ASECKKGSIDP---AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK-VLN-----MVHHLPTAHLNYTD 476 (767)
Q Consensus 407 ~~~c~~~~~~~---~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 476 (767)
...|.+....+ ....|+|+|+.||. .|.+|..+++++||.++|++++...... ... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798776644 78999999999999 9999999999999999999998653211 111 13489999999999
Q ss_pred HHHHHHHHhcCCC
Q 040503 477 GESVYAYINSTQN 489 (767)
Q Consensus 477 g~~l~~~~~~~~~ 489 (767)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=63.06 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCCCccceEEEEecCC---chhHHHHHHHHcCceEEEEeccCCCCccc-----c--cccccccEEEeehhhHHHHHHHH
Q 040503 415 IDPAKVQGKILICYGAR---YGDEKGQWAAQAGAVGMILVSSKESGNKV-----L--NMVHHLPTAHLNYTDGESVYAYI 484 (767)
Q Consensus 415 ~~~~~~~gkivl~~~g~---~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~~ 484 (767)
+...+++|||+|+.++. .+..|..+++++||.|+|++++....... . .....+|.+.|+..+|+.|+..+
T Consensus 38 ~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l 117 (127)
T cd04819 38 FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVA 117 (127)
T ss_pred cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHH
Confidence 44557999999999976 56889999999999999999876542211 1 22357999999999999999999
Q ss_pred hcCC
Q 040503 485 NSTQ 488 (767)
Q Consensus 485 ~~~~ 488 (767)
+.+.
T Consensus 118 ~~g~ 121 (127)
T cd04819 118 ERND 121 (127)
T ss_pred hcCC
Confidence 8754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0039 Score=56.21 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=49.3
Q ss_pred EEeecCCceEEEEEEEEecCCCCceEEEEEec--------CCC----------c-eEEEEcCEEEEeeCCcEEEEEEEEE
Q 040503 685 IAVPKLNGTITFTRKVKNVGAANSTYKARTSE--------ITG----------V-STIVEPSILNFTKYGEEKTFKVAFS 745 (767)
Q Consensus 685 ~~~~~~~~~~t~~rtvtnv~~~~~ty~~~~~~--------p~g----------~-~v~v~p~~~~~~~~~~~~~~~v~~~ 745 (767)
|++.+.....+++++|+|.|+...+|+++... ..| . .+...|.++++ ++|++++|+|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 34556566799999999999999999997651 111 1 57777888999 8999999999999
Q ss_pred EccC---CCCCceeeeeeeEEEEcC
Q 040503 746 VKGD---DKPTDYGFWRIGLVRWFS 767 (767)
Q Consensus 746 ~~~~---~~~~~~~~~~~~~~~w~~ 767 (767)
+ .. .+...+.. |.|.+++
T Consensus 80 ~-p~~~~~~~~~~~e---G~I~~~~ 100 (112)
T PF06280_consen 80 P-PSGLDASNGPFYE---GFITFKS 100 (112)
T ss_dssp ---GGGHHTT-EEEE---EEEEEES
T ss_pred e-hhcCCcccCCEEE---EEEEEEc
Confidence 9 32 13345555 7776653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=54.18 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=57.2
Q ss_pred CCCCccceEEEEecCC-------chhHH-------HHHHHHcCceEEEEeccCCC-------Ccccc-cccccccEEEee
Q 040503 416 DPAKVQGKILICYGAR-------YGDEK-------GQWAAQAGAVGMILVSSKES-------GNKVL-NMVHHLPTAHLN 473 (767)
Q Consensus 416 ~~~~~~gkivl~~~g~-------~~~~~-------~~~~~~~G~~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 473 (767)
...+++|||+|+.++. .+..| .+.++++||.++|+++.... +.... .....+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 4567999999998865 34455 68899999999999986422 11111 223469999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 040503 474 YTDGESVYAYINSTQNPTA 492 (767)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (767)
..++..|...++.+...++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999888765444
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.02 Score=55.68 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCC------------------Ccccc------------c---
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKES------------------GNKVL------------N--- 462 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~------------------~~~~~------------~--- 462 (767)
..+++|||+|+.+|. .+.+|.++++++||.|+|+|++... ++.+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457899999999999 8899999999999999999988421 00000 0
Q ss_pred -ccccccEEEeehhhHHHHHHHHhcC
Q 040503 463 -MVHHLPTAHLNYTDGESVYAYINST 487 (767)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (767)
....||++-|+..++..|+..+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999988653
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.092 Score=43.84 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=41.0
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCceee
Q 040503 692 GTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGF 757 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 757 (767)
...+++.+|+|.|... ...++++..|.|-++...|..+.--++|+++++++++++-.....+.|.+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 5788999999999654 56888889999999888888776448899999999999833444555544
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.1 Score=56.97 Aligned_cols=79 Identities=25% Similarity=0.454 Sum_probs=64.2
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCC------CcccccccccccEEEeehhhHHHHHHHHhcCCC
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKES------GNKVLNMVHHLPTAHLNYTDGESVYAYINSTQN 489 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 489 (767)
+.+.++|+++..||. .|.+|.+.++.+||.+++++|+... ++........||..+|..++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 456899999999999 9999999999999999999999542 233334456899999999999999886666666
Q ss_pred ceEEEe
Q 040503 490 PTASMT 495 (767)
Q Consensus 490 ~~~~i~ 495 (767)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 655553
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=48.35 Aligned_cols=49 Identities=33% Similarity=0.528 Sum_probs=41.1
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-c------------hhHHHHHHHHcCceEEEEeccCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-Y------------GDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-~------------~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
...|...++...+++|||||+.++. . +..|.+++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3467777777889999999999876 2 55799999999999999999754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.11 Score=48.73 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=41.1
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-------------------chhHHHHHHHHcCceEEEEeccCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-------------------YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
...|...++...+++||||++.++. .+..|.+.++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 3468878888889999999998764 155799999999999999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.13 Score=48.22 Aligned_cols=38 Identities=18% Similarity=0.027 Sum_probs=35.0
Q ss_pred CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC
Q 040503 418 AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 418 ~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
-+++|||+|+..|. .+..|.+++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 46999999999999 899999999999999999998754
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.25 Score=46.83 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=40.3
Q ss_pred cCcccCCCCCCCCccceEEEEecCC-------------------chhHHHHHHHHcCceEEEEeccCCC
Q 040503 407 ASECKKGSIDPAKVQGKILICYGAR-------------------YGDEKGQWAAQAGAVGMILVSSKES 456 (767)
Q Consensus 407 ~~~c~~~~~~~~~~~gkivl~~~g~-------------------~~~~~~~~~~~~G~~g~i~~~~~~~ 456 (767)
...|....+...+++|||||+.++. .+..|..++++.|+.|+|++++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3457666777788999999998762 2467899999999999999998653
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.3 Score=49.34 Aligned_cols=39 Identities=36% Similarity=0.406 Sum_probs=35.0
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE 455 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~ 455 (767)
..+++|||+|+.+|. .+..|.++++++||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 457999999999998 678999999999999999999854
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=89.27 E-value=3.8 Score=35.84 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=42.6
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+.+.+|+|.|.....|++.......-.++++|..-.+ .+|++.++.|+|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~ 73 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP 73 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe
Confidence 4677788899999999999987644234557777766556 78999999999996
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=88.14 E-value=2.8 Score=37.89 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=39.4
Q ss_pred eEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 693 TITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 693 ~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.-.++..|+|.+..+.+|++++..++|+++......+++ ++|++.++.|.+.+
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEE
Confidence 567889999999999999999999889999665588888 88999999999988
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.73 Score=42.77 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=65.4
Q ss_pred ccCcccCCCCCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc----------ccccccccEEEeeh
Q 040503 406 DASECKKGSIDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV----------LNMVHHLPTAHLNY 474 (767)
Q Consensus 406 ~~~~c~~~~~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~----------~~~~~~~p~~~i~~ 474 (767)
....|....- .-...|.+.|.+||. +|..|..++.++||..+|+.++.....++ ..+...+|+.++-.
T Consensus 73 Pp~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 4567876432 234678999999999 99999999999999999999987654333 12235789999999
Q ss_pred hhHHHHHHHHhcCCCceEEE
Q 040503 475 TDGESVYAYINSTQNPTASM 494 (767)
Q Consensus 475 ~~g~~l~~~~~~~~~~~~~i 494 (767)
.+|..++.-++.-...-+.|
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i 171 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKI 171 (193)
T ss_pred cceEEEehhHHHhCCccEEE
Confidence 99987777776655444443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.7 Score=46.65 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=63.0
Q ss_pred cCcccCCCC---CCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccccc----ccccccEEEeehhhHH
Q 040503 407 ASECKKGSI---DPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKVLN----MVHHLPTAHLNYTDGE 478 (767)
Q Consensus 407 ~~~c~~~~~---~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~ 478 (767)
.++|++..- ........++|+.||+ +|.+|..+++++|..++|+||+......... ....++.++++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356776432 2445778899999999 9999999999999999999998776543332 3357899999999999
Q ss_pred HHHHHHhcC
Q 040503 479 SVYAYINST 487 (767)
Q Consensus 479 ~l~~~~~~~ 487 (767)
.|..|....
T Consensus 142 ~l~~~~~~~ 150 (348)
T KOG4628|consen 142 LLSSYAGRT 150 (348)
T ss_pred HHHHhhccc
Confidence 998875544
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.57 E-value=3.6 Score=45.39 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=54.5
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCcee
Q 040503 692 GTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYG 756 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 756 (767)
...++...+.|.|+.+ ..-++++..|.|-++.|+|.++---++|++.++.+|+++...+..++|.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 5688888999999866 6678899999999999999887665889999999999985566777765
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.78 E-value=0.97 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCCCCceEEEEecccCCCCCCCcc
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFA 162 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~ 162 (767)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 579999999999999999998874
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=81.41 E-value=10 Score=34.31 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=43.8
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec---CC----CceEEEEcCEEEEeeCCcEEEEEEEEEEccC-CCCCceeee
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSE---IT----GVSTIVEPSILNFTKYGEEKTFKVAFSVKGD-DKPTDYGFW 758 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~---p~----g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 758 (767)
...+.+++|+|.++....+.+.+.. .. .-.+-++|..+++ ++|++++++| +.. .. ....+..||
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~-~~~~~~~E~~yr 85 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG-SKLPIDRESLYR 85 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC-SGS-SSS-EEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec-CCCCCCceEEEE
Confidence 3456688899999866666666654 11 1258899999999 8899999999 664 33 234455554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 767 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-107 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-95 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-11 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 4e-11 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 2e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 7e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 7e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 7e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 7e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 8e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 8e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 9e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 9e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 9e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-05 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-05 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-05 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-05 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-05 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 2e-05 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-05 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 3e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 3e-05 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-05 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-05 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 4e-05 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 4e-05 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-05 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 5e-05 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-05 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 6e-05 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 7e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 7e-05 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 7e-05 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-04 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-04 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-04 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 3e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 4e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 631 bits (1628), Expect = 0.0
Identities = 231/661 (34%), Positives = 337/661 (50%), Gaps = 40/661 (6%)
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
TT + DFL L P W + G+DVI+A +DSG+WPES SF DDGM IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 175 GICQND-NYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLA 233
GIC+ + CN+KLIG Y N+G + N RD +GHGTH +
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSA------RDTDGHGTHCAS 109
Query: 234 TAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDG 293
GNF VS +G GTA+G +P+AR+A YK + N+ ++D+++A D A+ DG
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF----NEGTFTSDLIAAMDQAVADG 165
Query: 294 VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
VD+IS S G ++ I+I SF AMM G++ A+AGN GP GS+ N +PWIL V +
Sbjct: 166 VDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKG 413
TDR F +TLGN + I+G S+ P+I + E+ +
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVR--DSPVIYNKTLSDCSSEELLS------ 277
Query: 414 SIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473
+ I+IC ++ + +A I +S + P +N
Sbjct: 278 --QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISE--DPGVFRSATFPNPGVVVN 333
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
+G+ V Y+ ++ PTA++T +T +T+P+ ++A ++RGP+ I KPD+ APG
Sbjct: 334 KKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPG 393
Query: 534 VDIIAAFTEASGPSP-DETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592
V I+AA+ + YI+ SGTSM+ PH AGI ++K HP+WSP+AI+S
Sbjct: 394 VLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRS 453
Query: 593 AIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICD 652
A+MTTA D++ +PI D + + ATP GAGHV+PN ALDPGLVYD T +DY+ +C
Sbjct: 454 AMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCS 513
Query: 653 RGYNQSTIDLFTAPKKFTCPKSFNLADFNYPS-IAVPKLNGTI-----TFTRKVKNVGAA 706
+ + + S AD NYPS IA+ + G F R V NVG
Sbjct: 514 LNFTEEQFKTIA-RSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG 572
Query: 707 NSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGFWRIGLVRWF 766
+TYKA+ + V P IL F E++++ + GD+ G + W
Sbjct: 573 AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEG-QSRNV---GSITWV 628
Query: 767 S 767
Sbjct: 629 E 629
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 615 bits (1588), Expect = 0.0
Identities = 231/644 (35%), Positives = 341/644 (52%), Gaps = 51/644 (7%)
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
TTRSWDFLG P + ++++ ++++ +D+G+WPES SF D+G P P KWK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 175 GICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLAT 234
G C+ N CN+K+IG R + G P ++ RD GHGTHT +T
Sbjct: 54 GTCETSN--NFRCNRKIIGARSYHIGRPIS----------PGDVNGPRDTNGHGTHTAST 101
Query: 235 AGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294
A G V ++YG G GTA+GG P AR+AAYKVCW ND C+ DIL+AYD AI DGV
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW----NDGCSDTDILAAYDDAIADGV 157
Query: 295 DVISASLGS-IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353
D+IS S+G R + + IAIGSFHA+ GI++ +AGN GP+ + +++PW+L+V A
Sbjct: 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKG 413
ST DR+F + V +GN +G S++ D YPL+ G D + + C
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSINT----FDNQYYPLVSGRDIPNTGFDKSTSRFCTDK 273
Query: 414 SIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473
S++P ++GKI++C ++ +L++S + LP++ L+
Sbjct: 274 SVNPNLLKGKIVVC---EASFGPHEFFKSLDGAAGVLMTSNTRD---YADSYPLPSSVLD 327
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
D + YI S ++P A++ S T + ++ F+SRGPN + KPD++ PG
Sbjct: 328 PNDLLATLRYIYSIRSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVIKPDISGPG 386
Query: 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593
V+I+AA+ + +R + ++SGTSMSCPH+ GI VKT +P WSPAAIKSA
Sbjct: 387 VEILAAWPSVAPVGGI---RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSA 443
Query: 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDR 653
+MTTA + FAYG+GHVNP A+ PGLVYD DY+ ++C +
Sbjct: 444 LMTTASPMN---------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQ 494
Query: 654 GYNQSTIDLFTAPKKFTCP-KSFNLADFNYPSIAV---PKLNGTITFTRKVKNVGAANST 709
GYN + T + + D NYPS + P F R + +V ST
Sbjct: 495 GYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST 554
Query: 710 YKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPT 753
Y+A S G++ V P++L+F G+ K+F +
Sbjct: 555 YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVV 598
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-146
Identities = 118/662 (17%), Positives = 206/662 (31%), Gaps = 118/662 (17%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
+ +KA G ++A +D+G +++ + K + +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAK-----KEHGIT 61
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGT 252
++N K ++ HGTH G N
Sbjct: 62 YGEWVN--------DKVAYYHDYSKDGKTAVDQEHGTHVSGILSG----NAPSETKEPYR 109
Query: 253 AKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREH--LK 310
+G P+A++ +V + + + A AI+ G VI+ S G+ A + L
Sbjct: 110 LEGAMPEAQLLLMRVEI--VNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLP 167
Query: 311 NTIAIGSFHAMMNGIVSVAAAGNSG-------------PDDGSV--ENVAPWILTVGAST 355
+ +A G+ V +AGN PD G V A LTV + +
Sbjct: 168 DETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 227
Query: 356 TDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSI 415
D++ T V + P++ + +
Sbjct: 228 PDKQLTETVRVKTADQQDK-------------EMPVLSTNRFEPNKAYDYAYANRGTKED 274
Query: 416 DPAKVQGKILIC-YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNM-VHHLPTAHLN 473
D V+GKI + G +K A +AGAVG+++ +++ G + V +P A ++
Sbjct: 275 DFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS 334
Query: 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPG 533
DG + T + + T ++ F+S G KPD+ APG
Sbjct: 335 RKDGLLLKDNPQK----TITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPG 388
Query: 534 VDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593
DI+++ Y +SGTSMS P VAGI+GL++ + P S
Sbjct: 389 QDILSSVANNK-------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSE 435
Query: 594 IMTTAR-AEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICD 652
+ A+ SS + D++ +P GAG V+ A + +T +D
Sbjct: 436 RLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVH 493
Query: 653 RGYNQSTIDLFTAPKKFTCPKSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAANSTYK- 711
+ T V N
Sbjct: 494 LNNV----------------------------------SDKFEVTVNVHNKSDKPQELYY 519
Query: 712 ---ARTSEITGVSTIVEPSILNFTKY-------GEEKTFKVAFSVKGDDKPTDYGFWRIG 761
+T ++ G + P +L T + K V K
Sbjct: 520 QATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGY 579
Query: 762 LV 763
+
Sbjct: 580 FL 581
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-30
Identities = 81/436 (18%), Positives = 144/436 (33%), Gaps = 70/436 (16%)
Query: 211 DAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWK 270
+ N + HGTH T N V G + A + KV
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIAAI-ANNEGVVG------VMPNQNANIHIVKVF-- 99
Query: 271 PNENDSCASADILSAYDLAI-HDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSV 328
NE S+ +++A D + G +V++ SLG +N + NG++ +
Sbjct: 100 -NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLI 154
Query: 329 AAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI--KGASV-SQKGLLND 385
AAAGN+G S +++V A ++ + ++ +++ I G ++ S +
Sbjct: 155 AAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEG 214
Query: 386 LDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGA 445
+ IGG V + S PA + ++ A
Sbjct: 215 RLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALA-ECTVNGTSFSCGNMA 273
Query: 446 VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINS----TQNPT---ASMTNSK 498
+ LV + + T + + Y NS QNP A+ +
Sbjct: 274 NKICLVERVGNQGS--SYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 499 TEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPY 558
+ + +A G + V+ G Y
Sbjct: 332 PSVSVDRATGLALKAKLGQS--------TTVSNQGNQ---------------------DY 362
Query: 559 IMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618
+GTSM+ PHV+G+ LV + HP+ S + +++A+ TA + R
Sbjct: 363 EYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN---------- 412
Query: 619 PFAYGAGHVNPNSALD 634
G G +N +A
Sbjct: 413 --QTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
++ F+SRGP D + KP+V APG IIAA Y
Sbjct: 303 VDKYDVITDFSSRGPT-ADNRL-KPEVVAPGNWIIAAR----ASGTSMGQPINDYYTAAP 356
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GT+M+ PHVAGI L+ HP W+P +K+A++ TA D ++ AY
Sbjct: 357 GTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAY 405
Query: 623 GAGHVNPNSALDPGLVYDLTFEDYLG 648
GAG VN A LTF Y+
Sbjct: 406 GAGRVNAYKAAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 4e-21
Identities = 65/315 (20%), Positives = 108/315 (34%), Gaps = 74/315 (23%)
Query: 66 VEEAESSIFHSYGRFINGFGAVLEEEHAKQL-----------ENHPGVVSVFPDEGAKLH 114
++ + I ++Y I ++ + + GV + D K+
Sbjct: 55 LDFLGAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVA 113
Query: 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWK 174
+ + W G + I +D+G+
Sbjct: 114 VETEGLDESAAQVM---ATNMWNLGYDGSGITIGIIDTGIDASHPDLQG----------- 159
Query: 175 GICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLAT 234
K+IG D V TT D+ GHGTH +
Sbjct: 160 ---------------KVIGWV---------------DFV--NGKTTPYDDNGHGTHVASI 187
Query: 235 AGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI---- 290
A G + G KG +P A++ KV N S + +DI++ D A+
Sbjct: 188 AAGTG-------AASNGKYKGMAPGAKLVGIKVL---NGQGSGSISDIINGVDWAVQNKD 237
Query: 291 HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN--VAPWI 348
G+ VI+ SLGS ++++ +A G+V V AAGNSGP+ +V + A +
Sbjct: 238 KYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKV 297
Query: 349 LTVGASTTDREFTSY 363
+TVGA T +
Sbjct: 298 ITVGAVDKYDVITDF 312
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 30/170 (17%)
Query: 494 MTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHK 553
M ++ + + +TSR P ID V APG I + S
Sbjct: 404 MMEAEYAMREKLPGNVYTWTSRDP-CIDGGQ-GVTVCAPGGAIAS--VPQFTMSK----- 454
Query: 554 RRIPYIMMSGTSMSCPHVAGIVGLV----KTLHPDWSPAAIKSAIMTTARAEDSSNRPIL 609
+M+GTSM+ PHVAG V L+ K + ++SP +IK AI TA +
Sbjct: 455 ----SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD---- 506
Query: 610 DQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQST 659
PFA G G +N A + + + ++ L + G N
Sbjct: 507 ---------PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK 547
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 20/184 (10%)
Query: 217 NLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDS 276
L HGTH + A GN S G +P A++ + +
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIG-DGRLGSM 311
Query: 277 CASADILSAYDLAI-----HDGVDVISASLGSIAREHLKNTIAIGSFHAMMN-GIVSVAA 330
++ A + +DVI+ S G A I + G+V VA+
Sbjct: 312 ETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVAS 371
Query: 331 AGNSGPDDGSVENVA----PWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDL 386
AGN GP +V P ++ VGA + + + + K+ + + + D
Sbjct: 372 AGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVYTWTSRDPCIDG 431
Query: 387 DSYP 390
Sbjct: 432 GQGV 435
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 499 TEFNTRPSRMMAFFTSRGPNMIDPAIF----KPDVTAPGVDIIAAFTEASGPSPDETHKR 554
+ +A ++SRG +++APG + + +
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG---------- 242
Query: 555 RIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTG 614
Y +SGTSM+ PHV+G+ + +P S ++S + A++ D
Sbjct: 243 ---YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY---GAAI 296
Query: 615 EKATPFAYGAGHVN 628
A G G
Sbjct: 297 GDDY--ASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH TA + + + YG A P A + AYKV ++ S S DI
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGI---YGVA----PDADLWAYKVL---LDSGSGYSDDI 116
Query: 283 LSAYDLAIHDGV-----DVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGP 336
+A A +IS SLGS A + + + +A G++ VAAAGNSG
Sbjct: 117 AAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGY 172
Query: 337 DDGSVEN--VAPWILTVGASTTDREFTSY 363
G++ P + V A ++ +Y
Sbjct: 173 SQGTIGYPGALPNAIAVAALENVQQNGTY 201
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 36/132 (27%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
S A F+S GP + DV APGV I + P Y +
Sbjct: 180 VDSSNQRASFSSVGP--------ELDVMAPGVSIQSTL-------PGNK------YGAYN 218
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GTSM+ PHVAG L+ + HP+W+ ++S++ T + F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTT-------TKL--------GDSFYY 263
Query: 623 GAGHVNPNSALD 634
G G +N +A
Sbjct: 264 GKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 9e-17
Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 65/236 (27%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
+ + G +V +A +DSG+
Sbjct: 14 PALHSQGYTGSNVKVAVIDSGI-------------------------------------- 35
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGT 252
+ +L+ +++P +D HGTH T + G
Sbjct: 36 ------DSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAAL--------NNSIGV 81
Query: 253 AKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EHLKN 311
G +P A + A KV + S + I++ + AI + +DVI+ SLG + LK
Sbjct: 82 L-GVAPSASLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA 137
Query: 312 TIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENV----APWILTVGASTTDREFTSY 363
+ A+ +G+V VAAAGN G S P ++ VGA + + S+
Sbjct: 138 AVD----KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASF 189
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 94.8 bits (235), Expect = 3e-20
Identities = 46/262 (17%), Positives = 81/262 (30%), Gaps = 32/262 (12%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP-----YIMMSG 563
+A F+SR V APGV I++ + ++ Y G
Sbjct: 328 VAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 564 TSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYG 623
TSM+ PHV G+V ++ P+ P I+ + TA + G
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF------------DFNGNGWDHDTG 427
Query: 624 AGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADFNYP 683
G V ++AL L E++ + D N +F + + + +
Sbjct: 428 YGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGI 487
Query: 684 SIAVPKLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVA 743
+ +GT + + R +I + E + V
Sbjct: 488 ARFPHIDSGTYD-------IFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVG 540
Query: 744 FSVKGDDKPTDYGFWRIGLVRW 765
F V D + F V++
Sbjct: 541 FGVSPDATQLNVNFNSTLQVKF 562
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 2e-11
Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKV---CWKPNEND 275
T GTH T G G G +P A++ + N
Sbjct: 192 TDSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGGNG 242
Query: 276 SCASADILSAYDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNS 334
+ + A G V++ S G +K +AM +G+V V +AGN+
Sbjct: 243 YVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAGNN 298
Query: 335 GPDDGSVENVA--PWILTVGAST 355
D + A P ++ V A
Sbjct: 299 T-SDSHHQYPAGYPGVIQVAALD 320
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 36/131 (27%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
+ A F+S G + +V APG + + + P T Y ++
Sbjct: 179 VDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-------PTNT------YATLN 217
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GTSM+ PHVAG L+ + HP+ S + +++ + +TA SS Y
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFY---------------Y 262
Query: 623 GAGHVNPNSAL 633
G G +N +A
Sbjct: 263 GKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH T + G G +P + A KV N + S + + I
Sbjct: 59 DGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVL---NSSGSGSYSGI 106
Query: 283 LSAYDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341
+S + A +G+DVI+ SLG + +K + +A G+V VAAAGNSG +
Sbjct: 107 VSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGSTN 162
Query: 342 ENV----APWILTVGASTTDREFTSY 363
++ VGA ++ S+
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNSNRASF 188
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 36/131 (27%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
T + A F+ G D+ APGV++ + + P T Y ++
Sbjct: 174 TDQNNNRASFSQYGA--------GLDIVAPGVNVQSTY-------PGST------YASLN 212
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GTSM+ PHVAG LVK +P WS I++ + TA + S+N Y
Sbjct: 213 GTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN---------------LY 257
Query: 623 GAGHVNPNSAL 633
G+G VN +A
Sbjct: 258 GSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 223 DEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADI 282
D GHGTH T + G G +P A + A KV + S + + I
Sbjct: 58 DGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL---GASGSGSVSSI 105
Query: 283 LSAYDLAIHDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341
+ A ++G+ V + SLGS + L+ + A G++ VAA+GNSG S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSISY 161
Query: 342 ENVAPWILTVGASTTDREFTSY 363
+ VGA+ + S+
Sbjct: 162 PARYANAMAVGATDQNNNRASF 183
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-18
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 30/142 (21%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIP----- 557
T ++ F++ G N D + APG +E + +
Sbjct: 343 TDQKSNLSEFSNFGMNYTD-------IAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA 395
Query: 558 ----YIMMSGTSMSCPHVAGIVGLVKT-LHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612
YI +GT+++ P V+G + L+ H + P + ++++
Sbjct: 396 NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR---- 451
Query: 613 TGEKATPFAYGAGHVNPNSALD 634
YG G ++ AL+
Sbjct: 452 ---------YGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 47/354 (13%), Positives = 95/354 (26%), Gaps = 118/354 (33%)
Query: 66 VEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHP-GVVSVFPDEGAKLHTTRS------ 118
V++ ++ ++ ++ + + HA L N+ + + + + ++
Sbjct: 61 VKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSN 119
Query: 119 -------WDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGV-----------WPESKS 160
WD + +++ + IA +D+GV +SK+
Sbjct: 120 ESLFSRQWDM-----NKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKN 174
Query: 161 FADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTT 220
G + + +
Sbjct: 175 LVP---------LNGFRGTEPEETGDVH-------------------------------D 194
Query: 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASA 280
D +GHGT N G G +P + Y+V +
Sbjct: 195 VNDRKGHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRVF----GSKKTELL 238
Query: 281 DILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFH-------------AMMNGIVS 327
+ A A +DG VI+ S+GS + A +
Sbjct: 239 WVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIV 298
Query: 328 VAAAGNSGPDDGSVENVA------------------PWILTVGASTTDREFTSY 363
VAAAGN G D + + ++TVG++ + +
Sbjct: 299 VAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNLSEF 352
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 1e-18
Identities = 64/328 (19%), Positives = 99/328 (30%), Gaps = 85/328 (25%)
Query: 66 VEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSWDFLGLE 125
V I + + + I + +L+ PGV V D A L SW G
Sbjct: 19 VLGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGST 77
Query: 126 KDNFIPP--------DSAWKKARF-GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGI 176
+ P S W + +A +D+GV + A
Sbjct: 78 QPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA------------- 124
Query: 177 CQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAG 236
+ + L D+ GHGTH + T
Sbjct: 125 ------------NIAWCVSTLRGKVST-------------KLRDCADQNGHGTHVIGTIA 159
Query: 237 GNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD---- 292
+ G G +P ++ + +V + S + +DI + AI
Sbjct: 160 AL--------NNDIGVV-GVAPGVQIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGV 207
Query: 293 ----------------GVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSVAAAGNSG 335
+VIS SLG A +L + I A GIV VAA+GN G
Sbjct: 208 ADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEG 263
Query: 336 PDDGSVENVAPWILTVGASTTDREFTSY 363
S P ++ VGA ++ S+
Sbjct: 264 APSPSYPAAYPEVIAVGAIDSNDNIASF 291
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 9e-14
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 48/145 (33%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
+ +A F++R P +V+APGVDI++ + PD++ Y +
Sbjct: 282 IDSNDNIASFSNRQP----------EVSAPGVDILSTY-------PDDS------YETLM 318
Query: 563 GTSMSCPHVAGIVGLVKTLH-------------PDWSPAAIKSAIMTTARAEDSSNRPIL 609
GT+M+ PHV+G+V L++ + D S ++ + TA
Sbjct: 319 GTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD---------- 368
Query: 610 DQNTGEKATPFAYGAGHVNPNSALD 634
+ G YG G V A+
Sbjct: 369 --DLGPTGWDADYGYGVVRAALAVQ 391
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 13/171 (7%)
Query: 473 NYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRM---MAFFTSRGPNMIDPAIFKPDV 529
+G ++ A + T T + + +A F+SRGP KPDV
Sbjct: 163 EGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTKDG--RIKPDV 220
Query: 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAA 589
APG I++A + + P Y M GTSM+ P VAG V ++
Sbjct: 221 MAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGIT 279
Query: 590 IKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYD 640
K +++ A + + G G G V + +L+ V +
Sbjct: 280 PKPSLLKAALIAGA-------ADIGLGYPNGNQGWGRVTLDKSLNVAYVNE 323
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 9e-15
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 57/241 (23%)
Query: 133 DSAWKKARF-GEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKL 191
D A G+ I+A D+G+ + ++ ++G K+
Sbjct: 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM---------------HEAFRG-----KI 50
Query: 192 IGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYG 251
+ + D GHGTH + GN + G
Sbjct: 51 TALYALG------------------RTNNANDTNGHGTHVAGSVLGN-------GSTNKG 85
Query: 252 TAKGGSPKARVAAYKVCWKPNENDSCAS--ADILSAYDLAIHDGVDVISASLGSIAREHL 309
A P+A + + + +++ + + A G + + S G+
Sbjct: 86 MA----PQANLVFQSIM---DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAY 138
Query: 310 KNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN--VAPWILTVGASTTDREFTSYVTLG 367
+ N + + AAGN GP+ G++ A +TVGA+ R
Sbjct: 139 TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADN 198
Query: 368 N 368
Sbjct: 199 I 199
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 3e-18
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 33/143 (23%)
Query: 492 ASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDET 551
A++ + + G N +D + APG +I PD
Sbjct: 219 AALAQYRKGETPVLHGGGITGSRFGNNWVD-------IAAPGQNITFLR-------PDAK 264
Query: 552 HKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQ 611
SGTS + V+G++ + + +P + +K ++ +A S +
Sbjct: 265 ------TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKV--- 315
Query: 612 NTGEKATPFAYGAGHVNPNSALD 634
+N A+
Sbjct: 316 ----------TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 35/255 (13%), Positives = 64/255 (25%), Gaps = 68/255 (26%)
Query: 132 PDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKL 191
++ V+++ VDSGV +F
Sbjct: 33 TETTMSLTDKNTPVVVSVVDSGV-----AFIGGLSDSE---------------------F 66
Query: 192 IGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYG 251
+ G+ P + HGT + YG
Sbjct: 67 AKFSFTQDGS-------------PFPVKKSEALYIHGTAMASLIASR-----------YG 102
Query: 252 TAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKN 311
G P A +++ +V ++ + + + + +I+ S G
Sbjct: 103 IY-GVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASV 161
Query: 312 TIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAP-----------------WILTVGAS 354
+ S N + VAA GN G D + ++ V A
Sbjct: 162 WTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAAL 221
Query: 355 TTDREFTSYVTLGNK 369
R+ + V G
Sbjct: 222 AQYRKGETPVLHGGG 236
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 31/136 (22%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
+ F++ G N K + APG +I+ A + ++
Sbjct: 247 AKVDGTPCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE------------PVRLT 289
Query: 563 GTSMSCPHVAGIVGLVKTLH----PDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618
GTSM+ P + GI L+ +L A+++A++ TA +
Sbjct: 290 GTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI----------PCDPEVVEE 339
Query: 619 PFAYGAGHVNPNSALD 634
P G VN A+
Sbjct: 340 PERCLRGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 41/238 (17%), Positives = 72/238 (30%), Gaps = 27/238 (11%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
+ + I +D F + + W + + + + +
Sbjct: 39 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIR 98
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGT 252
+ E L A PD H H +T G + V+G
Sbjct: 99 DQGLKGKEKEEALEAVIPDTKDRI------VLNDHACHVTSTIVG--QEHSPVFGI---- 146
Query: 253 AKGGSPKARVAAYKVCWKP--NENDSCASADILSAYDLAIHDGVDVISASLG-----SIA 305
+P RV N +D + ++ A DLA+ G ++I + S
Sbjct: 147 ----APNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEG 202
Query: 306 REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSY 363
E L I N ++ V+ GN+ + + V P L VGA+ D +
Sbjct: 203 EEILVQAIK----KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHF 256
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 3e-17
Identities = 46/334 (13%), Positives = 83/334 (24%), Gaps = 77/334 (23%)
Query: 46 DDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSV 105
++ ++ + + I H + + GF + + + P V +
Sbjct: 84 EETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 143
Query: 106 FPDEGAKLHTTRSWDFLGLEK-DNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADD 164
D + W LE+ ++ G V + +D+ + + +
Sbjct: 144 EEDSSVFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGR 199
Query: 165 GMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDE 224
G ++
Sbjct: 200 ------VMVTDFENVPEEDGTRFHR------------------------------QASKC 223
Query: 225 EGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILS 284
+ HGTH G G AK A + + +V N + L
Sbjct: 224 DSHGTHLAGVVSGR----------DAGVAK----GASMRSLRVL---NCQGKGTVSGTLI 266
Query: 285 AYDLAIHDGVD------VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD 338
+ + V+ L L G+V V AAGN D
Sbjct: 267 GLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFRDDA 322
Query: 339 -----GSVENVAPWILTVGASTTDREFTSYVTLG 367
S V +TVGA+ + + TLG
Sbjct: 323 CLYSPASAPEV----ITVGATNAQDQPVTLGTLG 352
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 4e-12
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APG DII A + + + SGTS + HVAGI ++ + P+ +
Sbjct: 360 DLFAPGEDIIGAS--SDCSTCFVS---------QSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 588 AAIKSAIMTTA 598
A ++ ++ +
Sbjct: 409 AELRQRLIHFS 419
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 37/132 (28%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
T + + F++ G + DV APG I + + P T Y +S
Sbjct: 184 TDQNDNKSSFSTYGSWV--------DVAAPGSSIYSTY-------PTST------YASLS 222
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GTSM+ PHVAG+ GL+ S + I++AI TA + +
Sbjct: 223 GTSMATPHVAGVAGLLA--SQGRSASNIRAAIENTADKISGTGT--------------YW 266
Query: 623 GAGHVNPNSALD 634
G VN A+
Sbjct: 267 AKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 52/235 (22%), Positives = 78/235 (33%), Gaps = 66/235 (28%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
AW A G IA VD+GV A +G
Sbjct: 21 PQAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVG------------------------- 54
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH---TLATAGGNFVPNVSVYGSG 249
G +++ N +T ++ GHGTH A N
Sbjct: 55 GWDFVD------------------NDSTPQNGNGHGTHCAGIAAAVTNN----------S 86
Query: 250 YGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EH 308
G A G +PKA + A +V + + S + + A G VIS SLG
Sbjct: 87 TGIA-GTAPKASILAVRVL---DNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSG 142
Query: 309 LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSY 363
L+ + +A G V VAAAGN+G + + V ++ + +S+
Sbjct: 143 LQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSF 193
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 51/280 (18%), Positives = 86/280 (30%), Gaps = 74/280 (26%)
Query: 96 LENHPGVVSVFPDEGAKLHTTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVW 155
+ + D+ + L G+E + + W+ + G II +D+G
Sbjct: 1 MRKFRLIPYKQVDKVSALSEV-PM---GVEI---VEAPAVWRASAKGAGQIIGVIDTGCQ 53
Query: 156 PESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIP 215
+ A+ ++IG N
Sbjct: 54 VDHPDLAE--------------------------RIIG-------------GVNLTTDYG 74
Query: 216 QNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEND 275
+ T D GHGTH T +G G G +PKA + K + +
Sbjct: 75 GDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKAL---SGDG 122
Query: 276 SCASADILSAYDLAI------HDGVDVISASLGSIAR-EHLKNTIAIGSFHAMMNGIVSV 328
S I A A+ + + +I+ SLG E L + + +A+ N + V
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVV 178
Query: 329 AAAGNSGPDDGSVENV-----APWILTVGASTTDREFTSY 363
AAGN G ++ VGA D + +
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDF 218
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 9e-16
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 38/137 (27%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
++ FT+ + D+ APGV I + + ++ Y +S
Sbjct: 209 VDFDLRLSDFTNTNE--------EIDIVAPGVGIKSTYLDSG-------------YAELS 247
Query: 563 GTSMSCPHVAGIVGLVKTLHPD-----WSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
GT+M+ PHVAG + L+ L D S I + ++ A G A
Sbjct: 248 GTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT------------PIGFTA 295
Query: 618 TPFAYGAGHVNPNSALD 634
G ++ +
Sbjct: 296 QAEGNGFLTLDLVERIT 312
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 37/132 (28%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
+A F++ G DV APGVDI++ Y MS
Sbjct: 185 VDQYDRLASFSNYGT--------WVDVVAPGVDIVSTI-------TGNR------YAYMS 223
Query: 563 GTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAY 622
GTSM+ PHVAG+ L+ + I+ AI TA + +
Sbjct: 224 GTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADKISGTGT--------------YF 267
Query: 623 GAGHVNPNSALD 634
G +N +A+
Sbjct: 268 KYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 51/235 (21%), Positives = 73/235 (31%), Gaps = 65/235 (27%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
D AW + IA +D+GV +
Sbjct: 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK------------------------- 55
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH---TLATAGGNFVPNVSVYGSG 249
G +++ +P D HGTH A N
Sbjct: 56 GYDFVDNDY-------DPM-----------DLNNHGTHVAGIAAAETNN----------A 87
Query: 250 YGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAR-EH 308
G A G +P R+ A + + N S +DI A A G +VI+ SLG
Sbjct: 88 TGIA-GMAPNTRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTT 143
Query: 309 LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSY 363
L+N + +A G V VAAAGN+G ++ VGA S+
Sbjct: 144 LENAVN----YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASF 194
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 48/145 (33%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
+ +A F++R P +V+APGVDI++ + PD++ Y +
Sbjct: 207 IDSNDNIASFSNRQP----------EVSAPGVDILSTY-------PDDS------YETLM 243
Query: 563 GTSMSCPHVAGIVGLVKTLH-------------PDWSPAAIKSAIMTTARAEDSSNRPIL 609
GT+M+ PHV+G+V L++ + D S ++ + TA
Sbjct: 244 GTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD---------- 293
Query: 610 DQNTGEKATPFAYGAGHVNPNSALD 634
+ G YG G V A+
Sbjct: 294 --DLGPTGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 37/168 (22%)
Query: 217 NLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDS 276
L D+ GHGTH + T + G G +P ++ + +V + S
Sbjct: 65 KLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVL---DARGS 112
Query: 277 CASADILSAYDLAIHD--------------------GVDVISASLGSIAR-EHLKNTIAI 315
+ +DI + AI +VIS SLG A +L + I
Sbjct: 113 GSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII- 171
Query: 316 GSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSY 363
A GIV VAA+GN G S P ++ VGA ++ S+
Sbjct: 172 ---QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 216
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 503 TRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMS 562
T + A F++ G + D+ APG DI++ + + Y M+
Sbjct: 228 TTSRGIRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDA------YSFMA 273
Query: 563 GTSMSCPHVAGIVGLVK----TLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKAT 618
GTSM+ PHV+G+ LV +++ + +PA +K +++T +
Sbjct: 274 GTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR-------------L 320
Query: 619 PFAYGAGHVNPNSALD 634
A G+G V+ +A++
Sbjct: 321 DRALGSGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 50/256 (19%), Positives = 83/256 (32%), Gaps = 45/256 (17%)
Query: 123 GLEKDNFIPPDSAWKKARFGEDVIIANVDSGVW--PESKSFADDGMGPIPSKWKGICQND 180
+ D W G++V++A VD+G+ + + G I + + +
Sbjct: 12 HYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDG 71
Query: 181 NYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH---TLATAGG 237
R + + P D HG+H T+A
Sbjct: 72 --------------RDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTN 117
Query: 238 NFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI------H 291
N G A G + A+V + + DS S + A I
Sbjct: 118 N----------RIGVA-GVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENR 166
Query: 292 DGVDVISASLGSIAR--EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA--PW 347
+ VI+ SLGS + + + I A G + V AAGN + S
Sbjct: 167 NPAKVINMSLGSDGQCSYNAQTMID----RATRLGALVVVAAGNEN-QNASNTWPTSCNN 221
Query: 348 ILTVGASTTDREFTSY 363
+L+VGA+T+ S+
Sbjct: 222 VLSVGATTSRGIRASF 237
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 32/157 (20%)
Query: 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE 273
N D GHGTH T G GS YG AK V +V N
Sbjct: 59 FIDNDYDATDCNGHGTHVAGTIG----------GSTYGVAK----NVNVVGVRVL---NC 101
Query: 274 NDSCASADILSAYDLAI--HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAA 331
+ S +++ +++ + G V + SLG A + + + A+ GI V AA
Sbjct: 102 SGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAA 157
Query: 332 GNSGPDD-----GSVENVAPWILTVGASTTDREFTSY 363
GN + + +TVG++T++ +S+
Sbjct: 158 GNDNSNACNYSPARAADA----ITVGSTTSNDSRSSF 190
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APG I +++ ++ +SGTSM+ PHVAG+ L +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSA-----------TNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 588 AAIKSAIMTTA 598
A + + + T A
Sbjct: 247 AQVTNLLKTRA 257
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 32/157 (20%)
Query: 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE 273
N D GHGTH T G GS YG AK + +V +
Sbjct: 57 FVDNDADSSDCNGHGTHVAGTIG----------GSQYGVAK----NVNIVGVRVL---SC 99
Query: 274 NDSCASADILSAYDLAI--HDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAA 331
+ S ++ ++S D G V + SLG L + + A+ +G+ + AA
Sbjct: 100 SGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAA 155
Query: 332 GNSGPDD-----GSVENVAPWILTVGASTTDREFTSY 363
GNS D V + +TVG++T+ +S+
Sbjct: 156 GNSNADACNTSPARVPSG----VTVGSTTSSDSRSSF 188
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 21/90 (23%)
Query: 509 MAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSC 568
+ F++ G + D+ APG I +A+ + Y +SGTSM+
Sbjct: 185 RSSFSNWGSCV--------DLFAPGSQIKSAWYDGG-------------YKTISGTSMAT 223
Query: 569 PHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598
PHVAG+ L + +P + + + A
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 8e-13
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APG DII A + + + SGTS + HVAGI ++ + P+ +
Sbjct: 208 DLFAPGEDIIGAS--SDCSTCFVS---------QSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 588 AAIKSAIMTTA 598
A ++ ++ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 33/160 (20%), Positives = 45/160 (28%), Gaps = 36/160 (22%)
Query: 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCA 278
+ HGTH G G AK A + + +V N
Sbjct: 66 RQASKCDSHGTHLAGVVS----------GRDAGVAK----GASMRSLRVL---NCQGKGT 108
Query: 279 SADILSAYDLAIHD------GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAG 332
+ L + G V+ L L G+V V AAG
Sbjct: 109 VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAG 164
Query: 333 NSGPDD-----GSVENVAPWILTVGASTTDREFTSYVTLG 367
N D S V +TVGA+ + + TLG
Sbjct: 165 NFRDDACLYSPASAPEV----ITVGATNAQDQPVTLGTLG 200
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 9e-13
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASA 280
G+D GHGTH T G G YG AK + A +V + N S +++
Sbjct: 64 GQDCNGHGTHVAGTIG----------GVTYGVAK----AVNLYAVRVL---DCNGSGSTS 106
Query: 281 DILSAYDLAIHDGVD--VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD 338
+++ D + V + SLG L N + +++ G+V AAGN +
Sbjct: 107 GVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDNANA 162
Query: 339 -----GSVENVAPWILTVGASTTDREFTSY 363
V LTVGA+T+ S+
Sbjct: 163 CNYSPARVAEA----LTVGATTSSDARASF 188
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APG I +A + D ++GTSM+ PHVAG+ L +P +P
Sbjct: 196 DLFAPGASIPSA-----WYTSDTA------TQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 588 AAIKSAIMTTA 598
A++ SAI+ A
Sbjct: 245 ASVASAILNGA 255
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 35/154 (22%)
Query: 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASA 280
RD GHGTH T G +G AK K + KV +++ S + +
Sbjct: 64 ARDGHGHGTHCAGTIG----------SKTWGVAK----KVSIFGVKVL---DDSGSGSLS 106
Query: 281 DILSAYDLAIHDGVD-------VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGN 333
+I++ D D V S SLG L A +G+ AAGN
Sbjct: 107 NIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAGN 162
Query: 334 SGPDDGSVENV----APWILTVGASTTDREFTSY 363
D N P + TVGA+ ++ +++
Sbjct: 163 DNRD---AANTSPASEPTVCTVGATDSNDVRSTF 193
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ APG I + + +SGTSM+ PH+AG+ + L S
Sbjct: 201 DIFAPGTSITSTWIGGR-------------TNTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 588 AAIKSAIMTTA 598
A+ I T +
Sbjct: 247 GAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 35/154 (22%)
Query: 221 GRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASA 280
RD GHGTH T G YG AK K ++ KV ++N S +
Sbjct: 63 SRDGNGHGTHCAGTVG----------SRTYGVAK----KTQLFGVKVL---DDNGSGQYS 105
Query: 281 DILSAYDLAIHDGVD-------VISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGN 333
I++ D D + V S SLG + + A +G++ AAGN
Sbjct: 106 TIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAGN 161
Query: 334 SGPDDGSVENV----APWILTVGASTTDREFTSY 363
+ D N P + TVGAS +S+
Sbjct: 162 NNAD---ARNYSPASEPSVCTVGASDRYDRRSSF 192
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 528 DVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSP 587
D+ PG DI++ + S +SGTSM+ PHVAG+ + TL +
Sbjct: 200 DIFGPGTDILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 588 AAIKSAIMTTA 598
A+ I TA
Sbjct: 246 ASACRYIADTA 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 22/141 (15%), Positives = 48/141 (34%)
Query: 558 YIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
GTS + P AG+ L+ +P+ + ++ + +A + + + K
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 324
Query: 618 TPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNL 677
YG G ++ + ++ ++ Y+ +QST + +L
Sbjct: 325 YSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESVITISEKSL 384
Query: 678 ADFNYPSIAVPKLNGTITFTR 698
D N+ I + I
Sbjct: 385 QDANFKRIEHVTVTVDIDTEI 405
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 35/256 (13%), Positives = 68/256 (26%), Gaps = 71/256 (27%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
W G V+ A VD G+ E++ D+ N N
Sbjct: 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF---CAEGSWDFNDNTN----------- 89
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGT 252
++ HGT G+ +
Sbjct: 90 ------------------------LPKPRLSDDYHGTRCAGEIAA-------KKGNNFCG 118
Query: 253 AKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGS--------- 303
G A+++ ++ + + D ++ + D D+ S S G
Sbjct: 119 V-GVGYNAKISGIRIL-----SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQG 171
Query: 304 ---IAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA----PWILTVGASTT 356
+ ++ L + G G + V A+GN G + + +T+GA
Sbjct: 172 PSDLVKKALVKGVTEGRDSK---GAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH 228
Query: 357 DREFTSYVTLGNKMVI 372
Y + ++
Sbjct: 229 KDLHPPYSEGCSAVMA 244
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 558 YIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKA 617
+GTS S P AGI+ L + + + ++ ++ T++ N N +
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAH-LNADDWATNGVGRK 312
Query: 618 TPFAYGAGHVNPNSALD 634
+YG G ++ + +
Sbjct: 313 VSHSYGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 44/277 (15%), Positives = 83/277 (29%), Gaps = 76/277 (27%)
Query: 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIG 193
AW + G ++++ +D G+ A NY G
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG-----------------NY--------DPG 63
Query: 194 IRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH---TLATAGGNFVPNVSVYGSGY 250
+ ++PD PQ T ++ HGT +A N G
Sbjct: 64 ASFDVND-------QDPD---PQPRYTQMNDNRHGTRCAGEVAAVANN----------GV 103
Query: 251 GTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH-DGVDVISASLG------- 302
G + AR+ ++ D + A L ++ + + + SAS G
Sbjct: 104 CGV-GVAYNARIGGVRML-------DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKT 155
Query: 303 -----SIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVA----PWILTVGA 353
+A E ++ G G + V A+GN G + S + L++ +
Sbjct: 156 VDGPARLAEEAFFRGVSQGRG---GLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISS 212
Query: 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYP 390
+T Y + + S + + +
Sbjct: 213 ATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDL 249
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.01 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.96 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.82 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.65 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.57 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.23 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.32 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 94.91 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 93.41 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.32 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 92.08 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 91.7 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 87.14 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.93 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 83.96 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 83.45 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-119 Score=1042.02 Aligned_cols=616 Identities=37% Similarity=0.641 Sum_probs=553.9
Q ss_pred ccCCCcccCCccCCCCCCccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCcccce
Q 040503 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNKKLIG 193 (767)
Q Consensus 115 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ki~g 193 (767)
|+++|+|+||... ..+|..+.+|+||+|||||||||++||+|.+.+++|++.+|+|.|+.+. |+...||+|+++
T Consensus 1 Tt~s~~flgl~~~-----~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNPS-----SGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCSS-----SSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCCc-----hhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 5789999999853 5799999999999999999999999999999999999999999999988 888899999999
Q ss_pred eEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCC
Q 040503 194 IRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE 273 (767)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~ 273 (767)
.++|.++++... .+ ...+..+++|..||||||||||||+.+++.+++|++.+.++||||+|+|++||+|+..+
T Consensus 76 ~~~f~~~~~~~~--~~----~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g- 148 (649)
T 3i6s_A 76 ANYFNKGILAND--PT----VNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG- 148 (649)
T ss_dssp EEECCHHHHHHC--TT----CCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE-
T ss_pred eEeccCcccccc--cc----cccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC-
Confidence 999998776542 11 23345678899999999999999999999999999999999999999999999999876
Q ss_pred CCCCChhHHHHHHHHhhhcCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEecc
Q 040503 274 NDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353 (767)
Q Consensus 274 ~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA 353 (767)
|..+++++||+||+++|+||||||||.....+..+++.+++++|+++||+||+||||+|+...+..+.+||+|+|||
T Consensus 149 ---~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgA 225 (649)
T 3i6s_A 149 ---TFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225 (649)
T ss_dssp ---ECHHHHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEE
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEee
Confidence 89999999999999999999999999886677889999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCc--cceEEEEecCC
Q 040503 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKV--QGKILICYGAR 431 (767)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~ 431 (767)
++.+|.|...+.+++++++.|.+++.... ....+|++|.. ....|.+..++..++ +|||++|.|+.
T Consensus 226 st~dr~f~~~~~lgng~~~~g~sl~~~~~--~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~ 293 (649)
T 3i6s_A 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARA--FVRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNG 293 (649)
T ss_dssp EECSCEEEEEEEETTSCEEEEECCCSSCB--CEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCS
T ss_pred eecccceeeEEEeCCCcEEeeeecccCcc--cCcceeeEecc----------cccccccccccccccccCCcEEEEeCCC
Confidence 99999999999999999999999987553 25678998765 356899988888877 99999999998
Q ss_pred -chhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCcee
Q 040503 432 -YGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMA 510 (767)
Q Consensus 432 -~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 510 (767)
.+.+|..+++++|+.|+|++++. .....+.+.+|.++|+..+|+.|++|++++.+++++|.+..++.+..+.+.++
T Consensus 294 ~~~~~k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va 370 (649)
T 3i6s_A 294 DFSDQMRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVA 370 (649)
T ss_dssp CHHHHHHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEEC
T ss_pred ccHHHHHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCccc
Confidence 89999999999999999999986 44566778999999999999999999999999999999999999888899999
Q ss_pred cccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCC-CccceeeecccccchhhHHHHHHHHHHhCCCCCHHH
Q 040503 511 FFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHK-RRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAA 589 (767)
Q Consensus 511 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ 589 (767)
.||||||+...++++||||+|||++|+++|+..........+. +...|..+||||||||||||+||||||+||+|+|++
T Consensus 371 ~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~ 450 (649)
T 3i6s_A 371 ASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSA 450 (649)
T ss_dssp TTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred ccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHH
Confidence 9999999997789999999999999999998865433322222 346899999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhhccCCCCccceecccCCCcc
Q 040503 590 IKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKF 669 (767)
Q Consensus 590 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (767)
||++||+||+++++.+.|+.+.....+++++.||+|+||+.+|++||||||++.+||++|||++||+..+|+.|++ .++
T Consensus 451 IksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~-~~~ 529 (649)
T 3i6s_A 451 IRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR-SSA 529 (649)
T ss_dssp HHHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT-TTS
T ss_pred HHHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec-CCC
Confidence 9999999999999999999886567788999999999999999999999999999999999999999999999999 677
Q ss_pred c--cCCCCCCCCCCCCeEEeec-CCce-----EEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEE
Q 040503 670 T--CPKSFNLADFNYPSIAVPK-LNGT-----ITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFK 741 (767)
Q Consensus 670 ~--~~~~~~~~~ln~ps~~~~~-~~~~-----~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~ 741 (767)
. |+. ...+||||||++.. +.+. ++|+|||||||...++|++++++|.|++|+|+|.+|+|++.+|+++|+
T Consensus 530 ~~~C~~--~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~ 607 (649)
T 3i6s_A 530 SHNCSN--PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYT 607 (649)
T ss_dssp CC-CCC--CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEE
T ss_pred cCCCCC--chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEE
Confidence 7 986 57799999999987 4555 999999999999899999999999999999999999999899999999
Q ss_pred EEEEEccCCCCCceeeeeeeEEEEcC
Q 040503 742 VAFSVKGDDKPTDYGFWRIGLVRWFS 767 (767)
Q Consensus 742 v~~~~~~~~~~~~~~~~~~~~~~w~~ 767 (767)
|||+. .......|.| |.|+|.+
T Consensus 608 v~~~~-~~~~~~~~~f---g~l~w~~ 629 (649)
T 3i6s_A 608 LTIRY-IGDEGQSRNV---GSITWVE 629 (649)
T ss_dssp EEEEE-CCC---CCCE---EEEEEEE
T ss_pred EEEEe-cccCCCceEE---EEEEEEc
Confidence 99998 4344556666 9999963
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-108 Score=954.98 Aligned_cols=600 Identities=38% Similarity=0.701 Sum_probs=503.9
Q ss_pred ccCCCcccCCccCCCCCCccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCccccee
Q 040503 115 TTRSWDFLGLEKDNFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGI 194 (767)
Q Consensus 115 ~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~ 194 (767)
|+++|+|+||+ ..+|....+|+||+|||||||||++||+|+|++++|++.+|+|.|+.+. .+.||+|++|+
T Consensus 1 tt~s~~flGl~-------~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~--~~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN--NFRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCC-------TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSS--SCCCCSSEEEE
T ss_pred CCCChhHcCCC-------ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCC--CcccCcceeee
Confidence 58999999998 4688888999999999999999999999999999999999999999887 55799999999
Q ss_pred EEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCC
Q 040503 195 RYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNEN 274 (767)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~ 274 (767)
++|..+.... ..+..+++|++||||||||||||+.+.+.+.+|++.+.++||||+|+|++||+|++.+
T Consensus 72 ~~~~~~~~~~----------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-- 139 (621)
T 3vta_A 72 RSYHIGRPIS----------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG-- 139 (621)
T ss_dssp EECCCSSSCC----------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE--
T ss_pred eecccCCccC----------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC--
Confidence 9998764432 2335678999999999999999999888888898889999999999999999999887
Q ss_pred CCCChhHHHHHHHHhhhcCCcEEEeccCCCC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEecc
Q 040503 275 DSCASADILSAYDLAIHDGVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGA 353 (767)
Q Consensus 275 ~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA 353 (767)
|..+++++||++|+++|+||||||||+.. ..+..+++++++++|+++||+||+||||+|+...++.+.+||+++|++
T Consensus 140 --~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~a 217 (621)
T 3vta_A 140 --CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217 (621)
T ss_dssp --ECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEE
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEE
Confidence 88999999999999999999999999873 456778999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCch
Q 040503 354 STTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYG 433 (767)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 433 (767)
++.++.+...+.++++..+.+.++.... ...+++++..+.............|.+..+++.+++|||++|.++.
T Consensus 218 st~d~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~-- 291 (621)
T 3vta_A 218 STMDRKFVTQVQIGNGQSFQGVSINTFD----NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF-- 291 (621)
T ss_dssp ECCSEEEEEEEEETTSCEEEEBCCCCSC----CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC--
T ss_pred eeccccceeeEEeccCceeeeeecccCC----CcccccccccccccccccccccccccccccccccccceEEEEecCC--
Confidence 9999999999999999999998887533 4567777776665555555667889999999999999999998764
Q ss_pred hHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceeccc
Q 040503 434 DEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFT 513 (767)
Q Consensus 434 ~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 513 (767)
..+.......|+.++|++++... ..+.+.+|...++..++..++.|+..+..+.+.+....+.. ....+.++.||
T Consensus 292 ~~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FS 366 (621)
T 3vta_A 292 GPHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFS 366 (621)
T ss_dssp CHHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTS
T ss_pred ChhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeec
Confidence 34556677889999999987543 23567899999999999999999999999999886665544 45578999999
Q ss_pred CCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHH
Q 040503 514 SRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSA 593 (767)
Q Consensus 514 s~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~ 593 (767)
||||+...++++||||+|||++|+|+++...... ...+...|..+||||||||||||++|||||+||+|+|++||++
T Consensus 367 SrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~Iksa 443 (621)
T 3vta_A 367 SRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSA 443 (621)
T ss_dssp CCCSCTTCTTSCSCCEEEECSSEEEECCSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCCCeeccccccCCcceEeecCcccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHH
Confidence 9999987799999999999999999998654322 1234468999999999999999999999999999999999999
Q ss_pred HHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhhccCCCCccceecccCCCccccCC
Q 040503 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYNQSTIDLFTAPKKFTCPK 673 (767)
Q Consensus 594 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (767)
||+||++++..+. +..+++||+|+||+.+|++||||||++.+||+.|||++||+.+++..+++ ....|+.
T Consensus 444 LmtTA~~~~~~~~---------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~-~~~~~~~ 513 (621)
T 3vta_A 444 LMTTASPMNARFN---------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG-DYSACTS 513 (621)
T ss_dssp HHHTCBCCCTTTC---------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC--------------------------
T ss_pred HHhcCCcccccCC---------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec-cccccCC
Confidence 9999998865543 44678999999999999999999999999999999999999999999999 7778876
Q ss_pred CC--CCCCCCCCeEEee---cCCceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEcc
Q 040503 674 SF--NLADFNYPSIAVP---KLNGTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKG 748 (767)
Q Consensus 674 ~~--~~~~ln~ps~~~~---~~~~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~ 748 (767)
.. ...+||||||++. +...+++|+|||||||...+||++++++|+|++|+|+|.+|+|++.+|+++|+|||+. .
T Consensus 514 ~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~-~ 592 (621)
T 3vta_A 514 GNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG-S 592 (621)
T ss_dssp ----CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE-C
T ss_pred CCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe-c
Confidence 54 4679999999985 4447899999999999999999999999999999999999999989999999999987 2
Q ss_pred CCCCCceeeeeeeEEEEcC
Q 040503 749 DDKPTDYGFWRIGLVRWFS 767 (767)
Q Consensus 749 ~~~~~~~~~~~~~~~~w~~ 767 (767)
..+.|.| |.|+|.+
T Consensus 593 --~~~~~~~---g~l~w~d 606 (621)
T 3vta_A 593 --IKGFVVS---ASLVWSD 606 (621)
T ss_dssp --CCSSEEE---EEEEEEC
T ss_pred --CCCceEE---EEEEEEc
Confidence 4566666 8999974
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-79 Score=736.08 Aligned_cols=525 Identities=25% Similarity=0.310 Sum_probs=411.7
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccC----------CC-CCcccCCcccceeEEcccch
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQN----------DN-YKGVSCNKKLIGIRYINQGT 201 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~----------~~-~~~~~~n~ki~g~~~~~~~~ 201 (767)
..+|..+.+|+||+|||||||||++||+|.+. ..|++.|.. .. ..+..||+|++++++|.++
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~- 79 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD- 79 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC-
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC-
Confidence 47999999999999999999999999999853 355555532 22 2345899999999998653
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhH
Q 040503 202 IEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASAD 281 (767)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~ 281 (767)
..++ |..||||||||||||+.+.+.+. ++.+.||||+|+|++||+|++.+. .+..++
T Consensus 80 ----------------~~~~-D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~~ 136 (926)
T 1xf1_A 80 ----------------GKTA-VDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL--ADYARN 136 (926)
T ss_dssp ----------------SCCC-CSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH--HHHHHH
T ss_pred ----------------CCCC-CCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC--CCcHHH
Confidence 1122 88999999999999997654332 245699999999999999987651 145678
Q ss_pred HHHHHHHhhhcCCcEEEeccCCCC--ccCcccHHHHHHHHHHhCCCEEEEecCCCCCC-------------CCCcccC--
Q 040503 282 ILSAYDLAIHDGVDVISASLGSIA--REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPD-------------DGSVENV-- 344 (767)
Q Consensus 282 i~~aid~a~~~gvdVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~~-- 344 (767)
+++||+||+++|+||||||||+.. .....+.+..++++|.++||+||+||||+|+. ..+..++
T Consensus 137 i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~ 216 (926)
T 1xf1_A 137 YAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 216 (926)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTT
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCccc
Confidence 999999999999999999999863 34456788899999999999999999999963 2233444
Q ss_pred CCceEEeccccCcceeeeeEEe-cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccce
Q 040503 345 APWILTVGASTTDREFTSYVTL-GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGK 423 (767)
Q Consensus 345 ~p~vitVgA~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 423 (767)
+||+|+|||++.++.+...+.+ +++....+.++.....++....+|+++... .|.+..+ .+++||
T Consensus 217 ~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gk 282 (926)
T 1xf1_A 217 ADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGK 282 (926)
T ss_dssp TCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTS
T ss_pred CCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCe
Confidence 7999999999999999988887 666555555554322223367789987542 4766655 689999
Q ss_pred EEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCccc-ccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceee
Q 040503 424 ILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNKV-LNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEF 501 (767)
Q Consensus 424 ivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 501 (767)
|++|.|+. .+.+|..+++.+|+.|+|++++....... .....++|...|+..+|..|++ ....++++.......
T Consensus 283 ivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~ 358 (926)
T 1xf1_A 283 IALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVL 358 (926)
T ss_dssp EEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEE
T ss_pred EEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceec
Confidence 99999998 89999999999999999999987543322 2345689999999999987773 445555554444345
Q ss_pred ccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHH--
Q 040503 502 NTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVK-- 579 (767)
Q Consensus 502 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~-- 579 (767)
.....+.++.||||||+. ++++||||+|||++|+++++.. .|..+||||||||||||++|||+
T Consensus 359 ~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~ 423 (926)
T 1xf1_A 359 PTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQ 423 (926)
T ss_dssp ECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHH
T ss_pred ccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHH
Confidence 556678999999999997 9999999999999999999763 89999999999999999999996
Q ss_pred --HhCCCCCHHH----HHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhhccC
Q 040503 580 --TLHPDWSPAA----IKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDR 653 (767)
Q Consensus 580 --q~~P~~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~~~~ 653 (767)
+.||+|+|+| ||++||+||++++..+ ....+++++||+|+||+.+|+++.+ |+|..
T Consensus 424 ~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~-------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~ 485 (926)
T 1xf1_A 424 YETQYPDMTPSERLDLAKKVLMSSATALYDED-------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDK 485 (926)
T ss_dssp HHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG-------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEES
T ss_pred HhccCCCCCHHHHHHHHHHHHHhcCCCcccCC-------CCccCChhccCCCccCHHHhcCCCe-----------EEEcC
Confidence 4699999997 9999999999875321 1224567899999999999999855 57876
Q ss_pred CCCccceecccCCCccccCCCCCCCCCCCCeEEeecCCceEEEEEEEEecCCC--CceEEEEEec--CCCceEEEEcCEE
Q 040503 654 GYNQSTIDLFTAPKKFTCPKSFNLADFNYPSIAVPKLNGTITFTRKVKNVGAA--NSTYKARTSE--ITGVSTIVEPSIL 729 (767)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~t~~rtvtnv~~~--~~ty~~~~~~--p~g~~v~v~p~~~ 729 (767)
+++.. +|.+.++....+++|||||+|+. ..+|++.+.. |.+..++|.|..|
T Consensus 486 ~~~~~-------------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l 540 (926)
T 1xf1_A 486 DNTSS-------------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVL 540 (926)
T ss_dssp SSSCS-------------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcc-------------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEecccee
Confidence 64332 34445445678999999999985 4678877765 7788999988877
Q ss_pred EEeeC-------CcEEEEEEEEEEcc-------CCCCCceeeeeeeEEEEc
Q 040503 730 NFTKY-------GEEKTFKVAFSVKG-------DDKPTDYGFWRIGLVRWF 766 (767)
Q Consensus 730 ~~~~~-------~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~~w~ 766 (767)
.|... ||+++|+|||++.. ..+.+.|.| |.|+|+
T Consensus 541 ~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~---G~i~~~ 588 (926)
T 1xf1_A 541 YETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLE---GFVRFK 588 (926)
T ss_dssp EECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEE---EEEEEE
T ss_pred EeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEE---EEEEEE
Confidence 66544 99999999999821 113444555 999996
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-61 Score=547.44 Aligned_cols=368 Identities=29% Similarity=0.430 Sum_probs=289.1
Q ss_pred CCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHh---------
Q 040503 26 AKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQL--------- 96 (767)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l--------- 96 (767)
.+.+|||.|++... .+...++++.+ ..++.+.|+ .++||+++++++++++|
T Consensus 34 ~~~~~iV~~~~~~~------------~~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~ 93 (539)
T 3afg_A 34 QEVSTIIMFDNQAD------------KEKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYF 93 (539)
T ss_dssp CEEEEEEEESSHHH------------HHHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC--
T ss_pred CceEEEEEECCCCC------------HHHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccc
Confidence 34569999997432 12222333332 257889997 79999999999999999
Q ss_pred --hCCCCeEEEEeCcccccCccCCCcccCCccC-CCCCCccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCc
Q 040503 97 --ENHPGVVSVFPDEGAKLHTTRSWDFLGLEKD-NFIPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKW 173 (767)
Q Consensus 97 --~~~~~V~~v~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w 173 (767)
+++|+|++|++++.+++.... .++... .+.....+|..+.+|+||+|||||||||++||+|.++
T Consensus 94 ~~~~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~--------- 160 (539)
T 3afg_A 94 GNAQLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK--------- 160 (539)
T ss_dssp -CCCCTTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT---------
T ss_pred ccccCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC---------
Confidence 899999999999998775322 111110 0011257899999999999999999999999999743
Q ss_pred cccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcc
Q 040503 174 KGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTA 253 (767)
Q Consensus 174 ~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~ 253 (767)
+++.++|..+ ...+.|++||||||||||+|+... ..+.+
T Consensus 161 -----------------i~~~~d~~~~-----------------~~~~~D~~gHGThVAgiiag~~~~-------~~g~~ 199 (539)
T 3afg_A 161 -----------------VIGWVDFVNG-----------------KTTPYDDNGHGTHVASIAAGTGAA-------SNGKY 199 (539)
T ss_dssp -----------------EEEEEETTTC-----------------CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTT
T ss_pred -----------------EeeeEECCCC-----------------CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCE
Confidence 5566666543 235678899999999999987422 12346
Q ss_pred cccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc----CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEE
Q 040503 254 KGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD----GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVA 329 (767)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~ 329 (767)
.||||+|+|+.+|++++.+ .+..+++++||+||+++ |++|||||||........+.+..++.++.++|++||+
T Consensus 200 ~GvAp~A~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~ 276 (539)
T 3afg_A 200 KGMAPGAKLVGIKVLNGQG---SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVV 276 (539)
T ss_dssp CCSCTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEE
T ss_pred EEECCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEE
Confidence 8999999999999998776 47889999999999875 8999999999875445667889999999999999999
Q ss_pred ecCCCCCCCCCc--ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEecccccccccccccc
Q 040503 330 AAGNSGPDDGSV--ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDA 407 (767)
Q Consensus 330 AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 407 (767)
||||+|+...+. ++..+++|+|||++.
T Consensus 277 AAGN~g~~~~~~~~Pa~~~~vitVgA~~~--------------------------------------------------- 305 (539)
T 3afg_A 277 AAGNSGPNKYTVGSPAAASKVITVGAVDK--------------------------------------------------- 305 (539)
T ss_dssp ECCSCCSSSSCCCTTTTCSSSEEEEEECT---------------------------------------------------
T ss_pred ECCCCCCCCCcccCCccCCceEEEeeecC---------------------------------------------------
Confidence 999999865444 455789999998543
Q ss_pred CcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcC
Q 040503 408 SECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINST 487 (767)
Q Consensus 408 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (767)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccc
Q 040503 488 QNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMS 567 (767)
Q Consensus 488 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 567 (767)
.+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||
T Consensus 306 ------------------~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmA 361 (539)
T 3afg_A 306 ------------------YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMA 361 (539)
T ss_dssp ------------------TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHH
T ss_pred ------------------CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHH
Confidence 14678999999998 8999999999999999998653211 01112369999999999
Q ss_pred hhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCC
Q 040503 568 CPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPG 636 (767)
Q Consensus 568 aP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~g 636 (767)
||||||++|||+|++|+|+|++||++|++||++++..+ .+++.||||+||+.+|++..
T Consensus 362 aP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 99999999999999999999999999999998764221 24578999999999999854
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-58 Score=506.00 Aligned_cols=345 Identities=27% Similarity=0.365 Sum_probs=275.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEEE
Q 040503 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVF 106 (767)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v~ 106 (767)
+.+|||.||+.... .+++++ ...++.+.|. .+++|+++++++++++|+++|+|++|+
T Consensus 2 ~~~~iV~~~~~~~~---------------~~~~~~-------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~ 58 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN---------------PHEVLG-------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVE 58 (395)
T ss_dssp EEEEEEEECTTTCC---------------HHHHHH-------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEE
T ss_pred cEEEEEEECCCccH---------------HHHHHH-------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEE
Confidence 46899999986432 122322 2357889998 599999999999999999999999999
Q ss_pred eCcccccCccCCC-----------cccCCccCCCCCCccccccCCCCCc--eEEEEecccCCCCCCCccCCCCCCCCCCc
Q 040503 107 PDEGAKLHTTRSW-----------DFLGLEKDNFIPPDSAWKKARFGED--VIIANVDSGVWPESKSFADDGMGPIPSKW 173 (767)
Q Consensus 107 ~~~~~~~~~~~s~-----------~~~g~~~~~~~~~~~~~~~~~~G~g--V~VgVIDtGid~~Hp~f~~~g~~~~~~~w 173 (767)
+++.++++....+ ..|++..+ ..+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i---~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------- 125 (395)
T 2z2z_A 59 FDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV---KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------- 125 (395)
T ss_dssp ECCEEEECCEECC------CCSCCCCHHHHHT---TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------
T ss_pred EeeeecccCCCCcccccccCccccCCcchhhc---CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------
Confidence 9999876543221 22333322 125789988 9999 99999999999999999753
Q ss_pred cccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcc
Q 040503 174 KGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTA 253 (767)
Q Consensus 174 ~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~ 253 (767)
+...++|..+... .+..++.|..||||||||||+|.. ++ .| +
T Consensus 126 -----------------~~~~~~~~~~~~~------------~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~ 167 (395)
T 2z2z_A 126 -----------------IAWCVSTLRGKVS------------TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----V 167 (395)
T ss_dssp -----------------EEEEEECGGGCCB------------CCHHHHBCSSSHHHHHHHHHHCCC-SS---SS-----C
T ss_pred -----------------cccCccccCCccc------------CCCCCCCCCCCCHHHHHHHHHeec-CC---Cc-----e
Confidence 3344444332100 001124578999999999999973 11 22 3
Q ss_pred cccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc--------------------CCcEEEeccCCCCccCcccHH
Q 040503 254 KGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD--------------------GVDVISASLGSIAREHLKNTI 313 (767)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~ 313 (767)
.||||+|+|+.+|++++.+ .+..+++++||+||+++ +++|||||||... ....+
T Consensus 168 ~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~ 241 (395)
T 2z2z_A 168 VGVAPGVQIYSVRVLDARG---SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYL 241 (395)
T ss_dssp CCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHH
T ss_pred EEECCCCEEEEEEEecCCC---CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHH
Confidence 8999999999999998776 47789999999999988 9999999999863 24567
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEe
Q 040503 314 AIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIG 393 (767)
Q Consensus 314 ~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~ 393 (767)
..++.++.++|++||+||||+|......++..|++|+|||++.
T Consensus 242 ~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------- 284 (395)
T 2z2z_A 242 YDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------- 284 (395)
T ss_dssp HHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------------------------------
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC-------------------------------------
Confidence 7788889999999999999999877777778899999999643
Q ss_pred ccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEee
Q 040503 394 GADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLN 473 (767)
Q Consensus 394 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~ 473 (767)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCC
Q 040503 474 YTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHK 553 (767)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 553 (767)
.+.++.||++|| +|+|||++|+++++..
T Consensus 285 --------------------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~~---------- 312 (395)
T 2z2z_A 285 --------------------------------NDNIASFSNRQP----------EVSAPGVDILSTYPDD---------- 312 (395)
T ss_dssp --------------------------------TSCBCTTSCSSC----------SEEEECSSEEEEETTT----------
T ss_pred --------------------------------CCCCCcccCCCC----------CEEeCCCCeeeecCCC----------
Confidence 246789999997 6799999999999763
Q ss_pred CccceeeecccccchhhHHHHHHHHHHhCC-------------CCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCC
Q 040503 554 RRIPYIMMSGTSMSCPHVAGIVGLVKTLHP-------------DWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPF 620 (767)
Q Consensus 554 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-------------~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 620 (767)
.|..++|||||||||||++|||+|++| .|++.+||++|++||+++... ..++
T Consensus 313 ---~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~------------g~~~ 377 (395)
T 2z2z_A 313 ---SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------------GWDA 377 (395)
T ss_dssp ---EEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS------------SSBT
T ss_pred ---ceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC------------CCCC
Confidence 799999999999999999999999999 999999999999999876422 2357
Q ss_pred ccCCCccCccCcCCC
Q 040503 621 AYGAGHVNPNSALDP 635 (767)
Q Consensus 621 ~~G~G~vd~~~A~~~ 635 (767)
.||||+||+.+|++.
T Consensus 378 ~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 378 DYGYGVVRAALAVQA 392 (395)
T ss_dssp TTBTCBCCHHHHHHH
T ss_pred CccCceeCHHHHHHH
Confidence 899999999999864
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-56 Score=502.76 Aligned_cols=337 Identities=19% Similarity=0.221 Sum_probs=264.2
Q ss_pred ccceEEEEcceeeeEEEEcCHHHHHHhhC-CCCeEEEEeCcccccCccCCC----------cccCCccCCCCCCcccccc
Q 040503 70 ESSIFHSYGRFINGFGAVLEEEHAKQLEN-HPGVVSVFPDEGAKLHTTRSW----------DFLGLEKDNFIPPDSAWKK 138 (767)
Q Consensus 70 ~~~i~~~y~~~~~g~~~~~~~~~~~~l~~-~~~V~~v~~~~~~~~~~~~s~----------~~~g~~~~~~~~~~~~~~~ 138 (767)
..++.+.|. .+++|+++++++++++|++ +|+|++|+++..++++..... ..|++..+... ..+|..
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~--~~~~~~ 141 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNN--GASYDD 141 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTT--TGGGGG
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCc--HHHHhc
Confidence 356778886 5999999999999999999 999999999998887644321 12333333211 378999
Q ss_pred CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCC
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNL 218 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (767)
+.+|+||+|||||||||++||+|.++- |. +.+.|..+....... .+...+.
T Consensus 142 ~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~------------------~~~~~~~~~~~~~~~----~~~~~~~ 192 (471)
T 3t41_A 142 LPKHANTKIAIIDTGVMKNHDDLKNNF-------ST------------------DSKNLVPLNGFRGTE----PEETGDV 192 (471)
T ss_dssp CCSSCCCCEEEEESCCCTTCTTTTTTB-------CT------------------TCEECCCTTCGGGCC----TTCCCCT
T ss_pred cCCCCCcEEEEEeCCCCCCChhHhcCc-------cc------------------CCcccccCCCccCCC----cccCCCC
Confidence 999999999999999999999998641 11 111222111000000 0011223
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEEE
Q 040503 219 TTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVIS 298 (767)
Q Consensus 219 ~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVIn 298 (767)
..+.|..||||||||||+|+. .+.||||+|+|+.+|++++.. +..+++++||+||+++|++|||
T Consensus 193 ~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~----~~~~~i~~ai~~a~~~g~~Vin 256 (471)
T 3t41_A 193 HDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKK----TELLWVSKAIVQAANDGNQVIN 256 (471)
T ss_dssp TCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSC----CCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCC----CcHHHHHHHHHHHHhCCCCEEE
Confidence 467789999999999999863 248999999999999998754 8899999999999999999999
Q ss_pred eccCCCCc-------------cCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC------------------cccCCCc
Q 040503 299 ASLGSIAR-------------EHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS------------------VENVAPW 347 (767)
Q Consensus 299 ~SlG~~~~-------------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~~p~ 347 (767)
||||.... ....+.+..++..+.++|++||+||||+|..... .++..|+
T Consensus 257 ~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~ 336 (471)
T 3t41_A 257 ISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDN 336 (471)
T ss_dssp ECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTT
T ss_pred eCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCC
Confidence 99997411 1234667888888999999999999999976543 4456789
Q ss_pred eEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEE
Q 040503 348 ILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILIC 427 (767)
Q Consensus 348 vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 427 (767)
+|+|||++.
T Consensus 337 vitVgA~~~----------------------------------------------------------------------- 345 (471)
T 3t41_A 337 VVTVGSTDQ----------------------------------------------------------------------- 345 (471)
T ss_dssp EEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999998643
Q ss_pred ecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCC
Q 040503 428 YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR 507 (767)
Q Consensus 428 ~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 507 (767)
.+
T Consensus 346 ------------------------------------------------------------------------------~~ 347 (471)
T 3t41_A 346 ------------------------------------------------------------------------------KS 347 (471)
T ss_dssp ------------------------------------------------------------------------------TS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 24
Q ss_pred ceecccCCCCCCCCCCcccceEEeCCCc----------------------EEEeecCCCCCCCCCCCCCccceeeecccc
Q 040503 508 MMAFFTSRGPNMIDPAIFKPDVTAPGVD----------------------IIAAFTEASGPSPDETHKRRIPYIMMSGTS 565 (767)
Q Consensus 508 ~~a~fSs~Gp~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 565 (767)
.++.||++||+. |||+|||++ |+++++.. .|..++|||
T Consensus 348 ~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGTS 407 (471)
T 3t41_A 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG-------------RYIYQAGTA 407 (471)
T ss_dssp SBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-------------SEEEECSHH
T ss_pred CCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC-------------CEEeecchH
Confidence 688999999963 499999987 88888763 799999999
Q ss_pred cchhhHHHHHHHHHHhCC-CCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCC
Q 040503 566 MSCPHVAGIVGLVKTLHP-DWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPG 636 (767)
Q Consensus 566 mAaP~VAG~aALl~q~~P-~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~g 636 (767)
||||||||++|||+|++| .++|++||++|++||++... .++..||||+||+.+|++..
T Consensus 408 ~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 408 LATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------CCHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------CCcCccccChhCHHHHHHHH
Confidence 999999999999999999 89999999999999986532 34578999999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-57 Score=518.89 Aligned_cols=338 Identities=20% Similarity=0.231 Sum_probs=57.4
Q ss_pred CEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEEEeC
Q 040503 29 PYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPD 108 (767)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v~~~ 108 (767)
+|||+||+.... ...+.+.+++...... .....++.+.|++.|+||+++++++++++|+++|+|++|+++
T Consensus 77 ~YIV~lk~~~~~---------~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd 146 (692)
T 2p4e_P 77 TYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 146 (692)
T ss_dssp EEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred cEEEEECCCCCH---------HHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEec
Confidence 799999997652 3333444444433221 112357899999999999999999999999999999999999
Q ss_pred cccccCccCCCcccCCccCCCCC-CccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccC
Q 040503 109 EGAKLHTTRSWDFLGLEKDNFIP-PDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSC 187 (767)
Q Consensus 109 ~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~ 187 (767)
+.++.+ ..+ |++..+.+.. ....|..+.+|+||+|||||||||++||+|.++.. |.
T Consensus 147 ~~v~~~-~~p---WgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~------------- 203 (692)
T 2p4e_P 147 SSVFAQ-SIP---WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT------------- 203 (692)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred cccccC-CCC---cchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------------
Confidence 988652 223 4454432111 12478888999999999999999999999986410 10
Q ss_pred CcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEe
Q 040503 188 NKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKV 267 (767)
Q Consensus 188 n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv 267 (767)
+...+.+. ++ ......+.|.+||||||||||+|+. .||||+|+|+++|+
T Consensus 204 -----~~~~~~d~----dg--------~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKV 252 (692)
T 2p4e_P 204 -----DFENVPEE----DG--------TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRV 252 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccccccCC----CC--------CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEe
Confidence 00000000 00 0001346789999999999999874 68999999999999
Q ss_pred ecCCCCCCCCChhHHHHHHHHhhhc------CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc
Q 040503 268 CWKPNENDSCASADILSAYDLAIHD------GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV 341 (767)
Q Consensus 268 ~~~~~~~~~~~~~~i~~aid~a~~~------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~ 341 (767)
+++.+ .++.+++++||+|++++ |++|||||||+.. ...+..++.++.++||+||+||||+|.+....
T Consensus 253 l~~~G---~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~ 325 (692)
T 2p4e_P 253 LNCQG---KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLY 325 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCC---CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCcc
Confidence 98876 47889999999999986 8999999999763 34566677788899999999999999765433
Q ss_pred -ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCc
Q 040503 342 -ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKV 420 (767)
Q Consensus 342 -~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 420 (767)
++..|++|+|||++.+...
T Consensus 326 sPA~~~~vItVGA~d~~~~~------------------------------------------------------------ 345 (692)
T 2p4e_P 326 SPASAPEVITVGATNAQDQP------------------------------------------------------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCCCEEEEEEEcCCCCc------------------------------------------------------------
Confidence 5667999999997643200
Q ss_pred cceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCcee
Q 040503 421 QGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTE 500 (767)
Q Consensus 421 ~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 500 (767)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH
Q 040503 501 FNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT 580 (767)
Q Consensus 501 ~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 580 (767)
...-+.||++||. |||+|||++|+++++... ..|..++|||||||||||++|||+|
T Consensus 346 -----a~~ss~fSn~G~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls 401 (692)
T 2p4e_P 346 -----VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLS 401 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----cccccccCCCCCc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHH
Confidence 0001238999984 499999999999997632 2789999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhccccc
Q 040503 581 LHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 581 ~~P~~sp~~ik~~L~~TA~~~ 601 (767)
++|+|+|++||++|++||.+.
T Consensus 402 ~~P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 402 AEPELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp ---------------------
T ss_pred HCCCCCHHHHHHHHHHhcccc
Confidence 999999999999999999764
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=486.49 Aligned_cols=382 Identities=21% Similarity=0.246 Sum_probs=274.2
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+ |+||+|||||||||++||+|.++ ++....+..
T Consensus 14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~~~~~~------------- 52 (441)
T 1y9z_A 14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSG------------- 52 (441)
T ss_dssp SSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTT-------------
T ss_pred hhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccCcccCC-------------
Confidence 4688865 77999999999999999999753 111111110
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCC--eEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKA--RVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
..+...+.|..||||||||||+|..+. .| +.||||+| +|+.+|++++.+ .+..+++++||+||+
T Consensus 53 --~~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g---~~~~~~~~~ai~~a~ 118 (441)
T 1y9z_A 53 --TGNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAG---WGYSSSLVAAIDTCV 118 (441)
T ss_dssp --SCCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTE---ECCSSCHHHHHHHHH
T ss_pred --CCCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHH
Confidence 001234668899999999999997521 23 48999995 999999998776 478889999999999
Q ss_pred hc-CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecC-
Q 040503 291 HD-GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGN- 368 (767)
Q Consensus 291 ~~-gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~- 368 (767)
++ |++|||||||... ....+..++.++.++|++||+||||+|+....+++..+++|+|||++.+.....+...+.
T Consensus 119 ~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~ 195 (441)
T 1y9z_A 119 NSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ 195 (441)
T ss_dssp HTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTT
T ss_pred HhcCCcEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCc
Confidence 99 9999999999873 234567788889999999999999999877777778899999999988764332222221
Q ss_pred ------------------ce----eEeeeeeeccccCCCCCcee--eEeccccccccccccccCcccCC--CCCCCCccc
Q 040503 369 ------------------KM----VIKGASVSQKGLLNDLDSYP--LIGGADARIANVSEIDASECKKG--SIDPAKVQG 422 (767)
Q Consensus 369 ------------------~~----~~~g~~~~~~~~~~~~~~~~--lv~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~g 422 (767)
+. ++.|.+++.....+....++ +.|..... ..........|... .++..+++|
T Consensus 196 vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~~~g 274 (441)
T 1y9z_A 196 VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGNMAN 274 (441)
T ss_dssp EEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCCCTT
T ss_pred eEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCCccc
Confidence 11 22233332211100000000 11111110 00011223458754 567889999
Q ss_pred eEEEEecCC------chhHHHHHHHHcCceEEEEeccCCCCcc------cccccccccEEEeehhhHHHHHHHHhcCCCc
Q 040503 423 KILICYGAR------YGDEKGQWAAQAGAVGMILVSSKESGNK------VLNMVHHLPTAHLNYTDGESVYAYINSTQNP 490 (767)
Q Consensus 423 kivl~~~g~------~~~~~~~~~~~~G~~g~i~~~~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 490 (767)
||++|.|+. .+..|..+++++|+.|+|++++...... .......+|.+.|+..+|+.|++|+...
T Consensus 275 kivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~--- 351 (441)
T 1y9z_A 275 KICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS--- 351 (441)
T ss_dssp EEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE---
T ss_pred cEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC---
Confidence 999999974 5778999999999999999988642111 1123457999999999999998876331
Q ss_pred eEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhh
Q 040503 491 TASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPH 570 (767)
Q Consensus 491 ~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 570 (767)
++ + ++... ..|..+|||||||||
T Consensus 352 -~t-----------------------------------~--------~~~~~-------------~~y~~~sGTSmAaP~ 374 (441)
T 1y9z_A 352 -TT-----------------------------------V--------SNQGN-------------QDYEYYNGTSMATPH 374 (441)
T ss_dssp -EE-----------------------------------E--------EEEEE-------------ESEEEECSHHHHHHH
T ss_pred -cc-----------------------------------c--------ccccC-------------CCceeecccccCCcc
Confidence 11 1 11111 289999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhh
Q 040503 571 VAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYI 650 (767)
Q Consensus 571 VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~ 650 (767)
|||++|||+|+||+|+|++||++||+||++++..+ ++..||+|+||+.+|+ ||+.||
T Consensus 375 VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~-----------~~~~~l 431 (441)
T 1y9z_A 375 VSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK-----------AYLDES 431 (441)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH-----------HHHHHC
T ss_pred cchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH-----------HHHHhh
Confidence 99999999999999999999999999999875433 2467999999999995 699999
Q ss_pred ccCCCC
Q 040503 651 CDRGYN 656 (767)
Q Consensus 651 ~~~~~~ 656 (767)
|++++.
T Consensus 432 c~~~~~ 437 (441)
T 1y9z_A 432 CTGPTD 437 (441)
T ss_dssp TTCC--
T ss_pred hcCCCC
Confidence 998853
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=491.43 Aligned_cols=379 Identities=22% Similarity=0.258 Sum_probs=273.4
Q ss_pred CCCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCH----HHHHHhhC--
Q 040503 25 AAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEE----EHAKQLEN-- 98 (767)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~----~~~~~l~~-- 98 (767)
..+.+|||.||+... ..++++.+ ..++.+.+. .+++++++++. +.+++|++
T Consensus 29 ~~~~~~IV~~k~~~~---------------~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~ 85 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALA 85 (671)
T ss_dssp BCTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSC
T ss_pred cCCccEEEEECCCcC---------------HHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhcc
Confidence 357899999997321 12223222 245667776 78899998864 34566764
Q ss_pred CCCeEEEEeCcccccCccC---------------------------CCcccCCccCCCCCCccc-cccCCCCCceEEEEe
Q 040503 99 HPGVVSVFPDEGAKLHTTR---------------------------SWDFLGLEKDNFIPPDSA-WKKARFGEDVIIANV 150 (767)
Q Consensus 99 ~~~V~~v~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~-~~~~~~G~gV~VgVI 150 (767)
+|+|++|||+..+++.... ....|++..+. +..+ |+. .+|+||+||||
T Consensus 86 ~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~---~~~a~w~~-~tG~gV~VAVI 161 (671)
T 1r6v_A 86 LKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEE-ASGTNIIVAVV 161 (671)
T ss_dssp CSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHH-CSCTTCEEEEE
T ss_pred CCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccC---Cchhhhhc-cCCCCCEEEEE
Confidence 8999999999876543100 00122332221 1355 888 89999999999
Q ss_pred cccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchh
Q 040503 151 DSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTH 230 (767)
Q Consensus 151 DtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTh 230 (767)
|||||++||+|.++ . +.+...+.+... + ...+..|.+|||||
T Consensus 162 DTGVd~~HpdL~~~-------~------------------~~g~~~~~~~~~----p---------~~~d~~d~~gHGTh 203 (671)
T 1r6v_A 162 DTGVDGTHPDLEGQ-------V------------------IAGYRPAFDEEL----P---------AGTDSSYGGSAGTH 203 (671)
T ss_dssp ESCCBTTSGGGTTT-------B------------------CCEEEGGGTEEE----C---------TTCBCCTTCSHHHH
T ss_pred eCCCCCCCcccccc-------E------------------EecccccCCCcC----C---------CCCCCccCCCcchh
Confidence 99999999999864 0 111111111100 0 01234467899999
Q ss_pred hhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCC---CCCCCCChhHHHHHHHHhhhcCCcEEEeccCCCCcc
Q 040503 231 TLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKP---NENDSCASADILSAYDLAIHDGVDVISASLGSIARE 307 (767)
Q Consensus 231 VAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~---~~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~~~ 307 (767)
|||||||.. ++ .| +.||||+|+|+++|+++.. +.......+.+++||+||+++|++|||||||+..
T Consensus 204 VAGiIAa~~-ng---~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-- 272 (671)
T 1r6v_A 204 VAGTIAAKK-DG---KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-- 272 (671)
T ss_dssp HHHHHHCCC-SS---SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC--
T ss_pred hhhhhhccC-CC---Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC--
Confidence 999999974 11 22 4899999999999999761 1111345677999999999999999999999863
Q ss_pred CcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCC
Q 040503 308 HLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDL 386 (767)
Q Consensus 308 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (767)
....+..++.+|.++|++||+||||+|.+. ...++..|++|+|||++.+..
T Consensus 273 -~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~--------------------------- 324 (671)
T 1r6v_A 273 -YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG--------------------------- 324 (671)
T ss_dssp -CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------------------------
T ss_pred -CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC---------------------------
Confidence 345678888899999999999999999764 445567899999999653210
Q ss_pred CceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccccccc
Q 040503 387 DSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHH 466 (767)
Q Consensus 387 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~ 466 (767)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCC
Q 040503 467 LPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGP 546 (767)
Q Consensus 467 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 546 (767)
...++.||++||.. ||+|||++|+++++.....
T Consensus 325 ---------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~ 357 (671)
T 1r6v_A 325 ---------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSI 357 (671)
T ss_dssp ---------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTST
T ss_pred ---------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCcc
Confidence 02478999999987 9999999999998764211
Q ss_pred CC-----CCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCc
Q 040503 547 SP-----DETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFA 621 (767)
Q Consensus 547 ~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 621 (767)
.. .......+.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...| .+..
T Consensus 358 g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g------------~d~~ 425 (671)
T 1r6v_A 358 GYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------WDHD 425 (671)
T ss_dssp TCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------------CBTT
T ss_pred ccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC------------CCCC
Confidence 00 000112347999999999999999999999999999999999999999998764322 3468
Q ss_pred cCCCccCccCcCCCCccccCCcchh
Q 040503 622 YGAGHVNPNSALDPGLVYDLTFEDY 646 (767)
Q Consensus 622 ~G~G~vd~~~A~~~glv~d~~~~~~ 646 (767)
||||+||+.+|++..|..+....+|
T Consensus 426 ~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 426 TGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp TBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred cccceeCHHHHhhhhcCCCCCccce
Confidence 9999999999999888776655444
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=434.89 Aligned_cols=259 Identities=31% Similarity=0.362 Sum_probs=212.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.+..|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T 1dbi_A 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhhcCCCCCCEEEEEeCCcCCCChhhccC--------------------------cccceeccCC------------
Confidence 57999998888999999999999999999753 4444454432
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||+|...++. | +.||||+|+|+.+|+++..+ .+..+++++||+||+++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 126 (280)
T 1dbi_A 63 -----DYDPMDLNNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNG---SGTLSDIADAIIYAADS 126 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHC
Confidence 22456889999999999999854322 2 38999999999999998766 47889999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|++|||||||... ....+..++.++.++|++||+||||+|......++..+++|+|||++.+
T Consensus 127 g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 188 (280)
T 1dbi_A 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--------------- 188 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---------------
T ss_pred CCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC---------------
Confidence 9999999999863 3456778888999999999999999997766667778999999996431
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+.++.||++||.. ||+||
T Consensus 189 ------------------------------------------------------~~~~~~S~~G~~~--------dv~Ap 206 (280)
T 1dbi_A 189 ------------------------------------------------------DRLASFSNYGTWV--------DVVAP 206 (280)
T ss_dssp ------------------------------------------------------SCBCTTBCCSTTC--------CEEEE
T ss_pred ------------------------------------------------------CCcCCCCCCCCCc--------eEEEe
Confidence 4678899999866 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|++|+++++.. .|..++|||||||||||++|||++ |.+++.+||++|++||+++..
T Consensus 207 G~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~--------- 262 (280)
T 1dbi_A 207 GVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG--------- 262 (280)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT---------
T ss_pred cCCeEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC---------
Confidence 99999998763 799999999999999999999987 899999999999999987642
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
....||||+||+.+|++
T Consensus 263 -----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcccCCEECHHHHhc
Confidence 12579999999999875
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=465.44 Aligned_cols=310 Identities=19% Similarity=0.204 Sum_probs=202.1
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
.++|..+..|++|+|||||||||++||+|++....+....|++.++.........+..+... ...++........
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--- 95 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQ--GLKGKEKEEALEA--- 95 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHH--TCCSHHHHHHHHH---
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCc--ccccccccccccc---
Confidence 47999999999999999999999999999987777777788876654330000000000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCC--CCCCChhHHHHHHHHhh
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNE--NDSCASADILSAYDLAI 290 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~--~~~~~~~~i~~aid~a~ 290 (767)
...+..++.|.+||||||||||+|+.. +.+.||||+|+|+.+|++..... ...+...+++++|+||+
T Consensus 96 -~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~ 164 (357)
T 4h6x_A 96 -VIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLAL 164 (357)
T ss_dssp -HCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHH
T ss_pred -ccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHH
Confidence 001123455778999999999999742 23489999999999999754321 11345667899999999
Q ss_pred hcCCcEEEeccCCCC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCc
Q 040503 291 HDGVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNK 369 (767)
Q Consensus 291 ~~gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~ 369 (767)
+.|++|||||||... .....+.+..++.++.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 165 ~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 231 (357)
T 4h6x_A 165 ELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV------------- 231 (357)
T ss_dssp HTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-------------
T ss_pred HcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-------------
Confidence 999999999999863 334566788888899999999999999999877777778899999999653
Q ss_pred eeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEE
Q 040503 370 MVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMI 449 (767)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i 449 (767)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceE
Q 040503 450 LVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDV 529 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 529 (767)
.+.++.|||||+.. .||||
T Consensus 232 --------------------------------------------------------~~~~~~fSn~G~~~-----~~~di 250 (357)
T 4h6x_A 232 --------------------------------------------------------DGTPCHFSNWGGNN-----TKEGI 250 (357)
T ss_dssp --------------------------------------------------------TSSBCTTCC---CT-----TTTEE
T ss_pred --------------------------------------------------------CCcccccccCCCCC-----Cccce
Confidence 25678999999754 58999
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCC
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSN 605 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g 605 (767)
+|||++|+++++.. ..|..++|||||||||||++|||++ ++|.|+++|||++|++||++++..
T Consensus 251 ~APG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~- 317 (357)
T 4h6x_A 251 LAPGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE- 317 (357)
T ss_dssp EEECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--------
T ss_pred eecCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-
Confidence 99999999998764 2677899999999999999999995 467899999999999999886422
Q ss_pred CcccCCCCCCCCCCCccCCCccCccCcCC
Q 040503 606 RPILDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 606 ~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
....+..||+|+||+.+|++
T Consensus 318 ---------~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 ---------VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----------------CTTCBCCHHHHHH
T ss_pred ---------CCCCcccceeEEecHHHHHH
Confidence 12345689999999999996
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=430.89 Aligned_cols=256 Identities=30% Similarity=0.423 Sum_probs=217.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+++|+||+|+|||||| .+||+|+ +...+.|..+
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~----------------------------~~~~~~~~~~------------ 52 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLN----------------------------IRGGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCC----------------------------EEEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhc----------------------------ccCCcccCCC------------
Confidence 5799999999999999999999 8999994 2223344322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..+++++||+||+++
T Consensus 53 -----~~~~~d~~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 115 (269)
T 1gci_A 53 -----EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIAQGLEWAGNN 115 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeECCCC---CcCHHHHHHHHHHHHHC
Confidence 12356889999999999999731 12248999999999999998766 47788999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
+++|||||||... ....+..++.++.++|++||+||||+|......++..+++|+|||++.+
T Consensus 116 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 177 (269)
T 1gci_A 116 GMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------- 177 (269)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCeEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC---------------
Confidence 9999999999873 2456778888899999999999999998777777778999999996431
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+.++.||++||.. ||+||
T Consensus 178 ------------------------------------------------------~~~~~~S~~G~~~--------di~AP 195 (269)
T 1gci_A 178 ------------------------------------------------------NNRASFSQYGAGL--------DIVAP 195 (269)
T ss_dssp ------------------------------------------------------SCBCTTCCCSTTE--------EEEEE
T ss_pred ------------------------------------------------------CCCCCCCCCCCCc--------ceEec
Confidence 4678899999976 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|++|+++++.. .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 196 G~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------- 252 (269)
T 1gci_A 196 GVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------- 252 (269)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------
T ss_pred CCCeEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------
Confidence 99999998763 7999999999999999999999999999999999999999998762
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
+++.||||+||+.+|++
T Consensus 253 -----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCccCHHHHcC
Confidence 24689999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=433.83 Aligned_cols=257 Identities=29% Similarity=0.422 Sum_probs=215.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+++|+||+|+|||||||++||+|+ +...+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~----------------------------~~~g~~~~~~------------ 53 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLN----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCC----------------------------EEEEEECSTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHc----------------------------CCCCccccCC------------
Confidence 579999999999999999999999999994 1223334322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..+++++||+||+++
T Consensus 54 -----~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~i~~ai~~a~~~ 116 (274)
T 1r0r_E 54 -----EAYNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSG---SGSYSGIVSGIEWATTN 116 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHc
Confidence 11346789999999999999731 12248999999999999998766 46788999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC----CCcccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD----GSVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|||||||... ....+..++.++.++|++||+||||+|... ...++..|++|+|||++.
T Consensus 117 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------------ 181 (274)
T 1r0r_E 117 GMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS------------ 181 (274)
T ss_dssp TCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT------------
T ss_pred CCCEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC------------
Confidence 9999999999873 245678888899999999999999999753 233456789999998543
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
.+.++.||++||.. |
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 196 (274)
T 1r0r_E 182 ---------------------------------------------------------NSNRASFSSVGAEL--------E 196 (274)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTTE--------E
T ss_pred ---------------------------------------------------------CCCcCccCCCCCCc--------e
Confidence 14678899999855 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
|+|||++|+++++.. .|..++|||||||||||++|||+|++|.|++++||++|++||+++.
T Consensus 197 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------ 257 (274)
T 1r0r_E 197 VMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------ 257 (274)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------
T ss_pred EEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------
Confidence 999999999998763 7999999999999999999999999999999999999999998752
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
++..||||+||+.+|++
T Consensus 258 ---------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCCcccCccCHHHHhC
Confidence 34689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=430.88 Aligned_cols=259 Identities=30% Similarity=0.414 Sum_probs=216.2
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~------------ 53 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----------------------------AGGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECCTT------------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----------------------------cCCccccCC------------
Confidence 5799999999999999999999999999952 222333221
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
+.....|..||||||||||+|..+ ...+.||||+|+|+.+|+++..+ .+..++++++|+|++++
T Consensus 54 ----~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 117 (281)
T 1to2_E 54 ----ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADG---SGQYSWIINGIEWAIAN 117 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeCCCC---CccHHHHHHHHHHHHHC
Confidence 011235789999999999999731 12248999999999999998766 46788999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC----CCcccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD----GSVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|||||||... ....+..++.++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 118 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------------ 182 (281)
T 1to2_E 118 NMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS------------ 182 (281)
T ss_dssp TCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT------------
T ss_pred CCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC------------
Confidence 9999999999873 246678888899999999999999999763 234456789999998543
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
.+.++.||++||.. |
T Consensus 183 ---------------------------------------------------------~~~~~~fS~~G~~~--------d 197 (281)
T 1to2_E 183 ---------------------------------------------------------SNQRASFSSVGPEL--------D 197 (281)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCCc--------e
Confidence 14678899999965 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
|+|||++|+++++.. .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 198 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------ 258 (281)
T 1to2_E 198 VMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------ 258 (281)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------
T ss_pred EEecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC------
Confidence 999999999998763 7999999999999999999999999999999999999999998762
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
+++.||||+||+.+|+++
T Consensus 259 ---------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccceecHHHHhhh
Confidence 346899999999999975
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-51 Score=427.79 Aligned_cols=258 Identities=30% Similarity=0.397 Sum_probs=218.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------ 61 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------ 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhcC--------------------------ccccccccCC------------
Confidence 5789887 799999999999999999999753 4444455432
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||+|...++. | +.||||+|+|+.+|+++..+ .++.+++++||+||+++
T Consensus 62 -----~~~~~d~~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 125 (279)
T 1thm_A 62 -----DSTPQNGNGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDNSG---SGTWTAVANGITYAADQ 125 (279)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCCCC---CccHHHHHHHHHHHHHC
Confidence 22456889999999999999864332 2 38999999999999998776 47888999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|++|||||||... ..+.+..++.++.++|++||+||||+|.....+++..+++|+|||++.+
T Consensus 126 g~~Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 187 (279)
T 1thm_A 126 GAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------- 187 (279)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCCEEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC---------------
Confidence 9999999999873 3456788888999999999999999998777777778999999996432
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+.++.||++||.. ||+||
T Consensus 188 ------------------------------------------------------~~~~~fS~~G~~~--------dv~AP 205 (279)
T 1thm_A 188 ------------------------------------------------------DNKSSFSTYGSWV--------DVAAP 205 (279)
T ss_dssp ------------------------------------------------------SCBCTTCCCCTTC--------CEEEE
T ss_pred ------------------------------------------------------CCcCCcCCCCCce--------EEEEc
Confidence 4678899999876 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|++|+++++.. .|..++|||||||||||++||| ++|.+++++||++|++||+++...
T Consensus 206 G~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------- 262 (279)
T 1thm_A 206 GSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------- 262 (279)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB--------
T ss_pred CCCeEEEeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC--------
Confidence 99999998763 7999999999999999999999 589999999999999999876432
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
...||||+||+.+|++
T Consensus 263 ------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 ------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ------TTTBSSEECCHHHHHH
T ss_pred ------CccccCCeeCHHHHhc
Confidence 1469999999999874
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=442.44 Aligned_cols=265 Identities=26% Similarity=0.338 Sum_probs=216.0
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+++|+||+|||||||||++||+|.++ +++.++|..++...
T Consensus 31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~~~~-------- 76 (327)
T 2x8j_A 31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAER--------------------------IIGGVNLTTDYGGD-------- 76 (327)
T ss_dssp HHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG--------------------------EEEEEECSSGGGGC--------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc--------------------------ccCCccccCCCCCC--------
Confidence 57999999999999999999999999999753 45555665543211
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH- 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~- 291 (767)
.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++++||+||++
T Consensus 77 -----~~~~~d~~gHGT~VAgiia~~~-~~--------~g~~GvAp~a~l~~~kv~~~~g---~~~~~~i~~ai~~a~~~ 139 (327)
T 2x8j_A 77 -----ETNFSDNNGHGTHVAGTVAAAE-TG--------SGVVGVAPKADLFIIKALSGDG---SGEMGWIAKAIRYAVDW 139 (327)
T ss_dssp -----TTCCCCSSSHHHHHHHHHHCCC-CS--------SBCCCSSTTCEEEEEECSCTTS---EECHHHHHHHHHHHHHC
T ss_pred -----CCCCCCCCCchHHHHHHHhccC-CC--------CCcEeeCCCCEEEEEEeECCCC---CcCHHHHHHHHHHHHhh
Confidence 2235688999999999999984 11 2248999999999999998766 4678899999999999
Q ss_pred -----cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-----CCcccCCCceEEeccccCcceee
Q 040503 292 -----DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-----GSVENVAPWILTVGASTTDREFT 361 (767)
Q Consensus 292 -----~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~~~~~ 361 (767)
.+++|||||||... ....+..++.++.++|++||+||||+|... ...++..+++|+|||++.+
T Consensus 140 ~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~---- 212 (327)
T 2x8j_A 140 RGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD---- 212 (327)
T ss_dssp CCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT----
T ss_pred cccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC----
Confidence 89999999999873 245677888889999999999999999652 2344567899999996532
Q ss_pred eeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHH
Q 040503 362 SYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAA 441 (767)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 441 (767)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCC
Q 040503 442 QAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMID 521 (767)
Q Consensus 442 ~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 521 (767)
+.++.||++||.+
T Consensus 213 -----------------------------------------------------------------~~~~~fS~~G~~~-- 225 (327)
T 2x8j_A 213 -----------------------------------------------------------------LRLSDFTNTNEEI-- 225 (327)
T ss_dssp -----------------------------------------------------------------CCBSCC---CCCC--
T ss_pred -----------------------------------------------------------------CCCCCccCCCCCc--
Confidence 4678899999855
Q ss_pred CCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHh-----CCCCCHHHHHHHHHh
Q 040503 522 PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL-----HPDWSPAAIKSAIMT 596 (767)
Q Consensus 522 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~~sp~~ik~~L~~ 596 (767)
||+|||++|+++++.. .|..++|||||||||||++|||+|+ +|.+++.+||++|++
T Consensus 226 ------di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~ 286 (327)
T 2x8j_A 226 ------DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVR 286 (327)
T ss_dssp ------SEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHT
T ss_pred ------eEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHH
Confidence 9999999999998753 7999999999999999999999999 999999999999999
Q ss_pred ccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 597 TARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 597 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
||+++. .++..+|||+||+.+|++.
T Consensus 287 tA~~~g--------------~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 287 RATPIG--------------FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp TEECCS--------------SCHHHHTTCEECTTHHHHH
T ss_pred hCccCC--------------CCCCceeeeEECHHHHHHh
Confidence 998762 1356899999999999973
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-50 Score=428.19 Aligned_cols=281 Identities=26% Similarity=0.312 Sum_probs=223.8
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+.+|+||+|||||||||++||+|.++ +...++|.....
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~--------------------------~~~~~~~~~~~~---------- 59 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATT---------- 59 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSS----------
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc--------------------------ccccccccCCCC----------
Confidence 57999999999999999999999999999754 344445543210
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
.......|..||||||||||+|.... ....+.||||+|+|+.+|++++.+ .+..++++++|+||+++
T Consensus 60 ---~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 126 (310)
T 2ixt_A 60 ---PINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSG---SGYSDDIAAAIRHAADQ 126 (310)
T ss_dssp ---CEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCC---CCcHHHHHHHHHHHHHh
Confidence 01224568899999999999987521 122348999999999999998776 47889999999999999
Q ss_pred CC-----cEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC--CCcccCCCceEEeccccCcceeeeeEE
Q 040503 293 GV-----DVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD--GSVENVAPWILTVGASTTDREFTSYVT 365 (767)
Q Consensus 293 gv-----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~ 365 (767)
++ +|||||||... ....+..++.++.++|++||+||||+|... ...++..|++|+|||++....
T Consensus 127 ~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~------ 197 (310)
T 2ixt_A 127 ATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ------ 197 (310)
T ss_dssp HHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE------
T ss_pred hhccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc------
Confidence 88 99999999873 245677888889999999999999999763 334456799999999652100
Q ss_pred ecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCc
Q 040503 366 LGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGA 445 (767)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~ 445 (767)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCC--ceecccCCCCCCCC--
Q 040503 446 VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSR--MMAFFTSRGPNMID-- 521 (767)
Q Consensus 446 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~-- 521 (767)
.+ .++.||++||....
T Consensus 198 ------------------------------------------------------------~g~~~~~~~S~~G~~~~~g~ 217 (310)
T 2ixt_A 198 ------------------------------------------------------------NGTYRVADYSSRGYISTAGD 217 (310)
T ss_dssp ------------------------------------------------------------TTEEEECTTSCCCCTTTTTS
T ss_pred ------------------------------------------------------------CCCeeeccccCCCCccCCcc
Confidence 12 57889999985321
Q ss_pred --CCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 522 --PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 522 --~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
..+.||||+|||++|+++++.. .|..++|||||||||||++|||+|++|.|++++||++|++||+
T Consensus 218 ~~~~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~ 284 (310)
T 2ixt_A 218 YVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK 284 (310)
T ss_dssp SSCCTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Confidence 1235999999999999998753 7999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccCCCCCCCCCCCccCCCccCc
Q 040503 600 AEDSSNRPILDQNTGEKATPFAYGAGHVNP 629 (767)
Q Consensus 600 ~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~ 629 (767)
+.+..+. .......+..+|||++|+
T Consensus 285 ~~~~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 285 SVDIKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp TSCCCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred ccCCCCC-----cccccCCccccccceeec
Confidence 8754321 233456678999999986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=430.68 Aligned_cols=266 Identities=21% Similarity=0.235 Sum_probs=210.4
Q ss_pred CCCC-CceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCC
Q 040503 139 ARFG-EDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN 217 (767)
Q Consensus 139 ~~~G-~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (767)
..+| +||+|||||||||++||+|.++ .+....+... ..
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~---------------~~ 41 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAP---------------TA 41 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSC---------------CC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCC---------------CC
Confidence 3578 6999999999999999999764 1111111110 00
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCCcEE
Q 040503 218 LTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVI 297 (767)
Q Consensus 218 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gvdVI 297 (767)
.....|.+||||||||||+|+.. ..+.||||+|+|+.+|++.+.+. .....++++||+||++++++||
T Consensus 42 ~~~d~~~~gHGT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~~~~Vi 109 (282)
T 3zxy_A 42 ARSDGFMSAHGTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRR--RITQLDLARGIERAVNAGAHII 109 (282)
T ss_dssp CCTTCHHHHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSS--CCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCCCCCCcccceeehhhccCC----------ceeeeeccccceEeeEeeccccc--cchHHHHHHHHHHhhccCCeEE
Confidence 11233567999999999998742 23489999999999999865442 3678889999999999999999
Q ss_pred EeccCCCC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeEeeee
Q 040503 298 SASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGAS 376 (767)
Q Consensus 298 n~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 376 (767)
|||||... .......+..++..+.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 110 n~S~G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 170 (282)
T 3zxy_A 110 NISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------- 170 (282)
T ss_dssp EECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------
T ss_pred eccCccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------
Confidence 99999762 2334566778888999999999999999998777777778999999996432
Q ss_pred eeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCC
Q 040503 377 VSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKES 456 (767)
Q Consensus 377 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~ 456 (767)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcE
Q 040503 457 GNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDI 536 (767)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 536 (767)
+.++.||++|+. +.||||+|||.+|
T Consensus 171 --------------------------------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i 195 (282)
T 3zxy_A 171 --------------------------------------------------GHPLDFSNWGST-----YEQQGILAPGEDI 195 (282)
T ss_dssp --------------------------------------------------SCBCSSSCCCHH-----HHHHEEEEECSSE
T ss_pred --------------------------------------------------CccccccCCCCC-----ccccceeccCcce
Confidence 467889999864 4789999999999
Q ss_pred EEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC----CCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 537 IAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH----PDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 537 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
+++++.. .|..++|||||||||||++|||++++ |.++|++||++|++||++++..
T Consensus 196 ~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-------- 254 (282)
T 3zxy_A 196 LGAKPGG-------------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-------- 254 (282)
T ss_dssp EEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------
T ss_pred eeecCCC-------------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC--------
Confidence 9998763 79999999999999999999999874 7899999999999999876422
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
.+.....+|+|+||+.+|++
T Consensus 255 --~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 255 --APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ------CGGGTTCBCCHHHHHH
T ss_pred --CCCccCceeeeEeCHHHHHH
Confidence 22345689999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-50 Score=430.07 Aligned_cols=265 Identities=29% Similarity=0.424 Sum_probs=217.8
Q ss_pred ccccccCCCCC--ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCC
Q 040503 133 DSAWKKARFGE--DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNP 210 (767)
Q Consensus 133 ~~~~~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (767)
+.+|+.+ +|+ ||+|||||||||++||+|.++ +.....|..+...
T Consensus 18 ~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~~~------- 63 (320)
T 2z30_A 18 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------------------IAWCVSTLRGKVS------- 63 (320)
T ss_dssp GGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG--------------------------EEEEEECGGGCCB-------
T ss_pred HHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc--------------------------cccCccccCCccC-------
Confidence 5799988 999 999999999999999999753 3333444332100
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 211 DAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 211 ~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
.......|..||||||||||+|.. ++ .| +.||||+|+|+.+|+++..+ .+..++++++|+||+
T Consensus 64 -----~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~~v~~~~g---~~~~~~i~~ai~~a~ 126 (320)
T 2z30_A 64 -----TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLDARG---SGSYSDIAIGIEQAI 126 (320)
T ss_dssp -----CCHHHHBCSSSHHHHHHHHHHCCS-SS---BS-----CCCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCCHHHHHHHHHccc-CC---Cc-----eEeeCCCCEEEEEEeeCCCC---CccHHHHHHHHHHHH
Confidence 001123578999999999999973 11 22 38999999999999998776 477899999999999
Q ss_pred hc--------------------CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEE
Q 040503 291 HD--------------------GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILT 350 (767)
Q Consensus 291 ~~--------------------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vit 350 (767)
++ +++|||||||... ....+..++.++.++|++||+||||+|.....+++..|++|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~ 203 (320)
T 2z30_A 127 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIA 203 (320)
T ss_dssp HTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEE
T ss_pred hCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEE
Confidence 87 9999999999873 245677788889999999999999999877777778899999
Q ss_pred eccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecC
Q 040503 351 VGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGA 430 (767)
Q Consensus 351 VgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 430 (767)
|||++.+
T Consensus 204 Vga~~~~------------------------------------------------------------------------- 210 (320)
T 2z30_A 204 VGAIDSN------------------------------------------------------------------------- 210 (320)
T ss_dssp EEEECTT-------------------------------------------------------------------------
T ss_pred EEeeCCC-------------------------------------------------------------------------
Confidence 9996431
Q ss_pred CchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCcee
Q 040503 431 RYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMA 510 (767)
Q Consensus 431 ~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 510 (767)
+.++
T Consensus 211 ----------------------------------------------------------------------------~~~~ 214 (320)
T 2z30_A 211 ----------------------------------------------------------------------------DNIA 214 (320)
T ss_dssp ----------------------------------------------------------------------------SCBC
T ss_pred ----------------------------------------------------------------------------CCcC
Confidence 4678
Q ss_pred cccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC--------
Q 040503 511 FFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-------- 582 (767)
Q Consensus 511 ~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------- 582 (767)
.||++|| +|+|||++|+++++.. .|..++|||||||||||++|||+|++
T Consensus 215 ~~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~ 271 (320)
T 2z30_A 215 SFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKIL 271 (320)
T ss_dssp TTSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhccccc
Confidence 8999997 7899999999998763 79999999999999999999999999
Q ss_pred -----CCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 583 -----PDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 583 -----P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
|.|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 272 ~~~~~p~lt~~~v~~~L~~ta~~~~~~------------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 272 PVGTFDDISKNTVRGILHITADDLGPT------------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCCTTCCSTTSHHHHHHHHSBCCSSS------------SSBTTTBTCBCCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhhCccCCCC------------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999876322 2346799999999999864
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-50 Score=428.65 Aligned_cols=273 Identities=23% Similarity=0.306 Sum_probs=218.2
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+++|+....++||+|||||||||++||+|.++. +.+..++..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~-------------------------~~~~~~~~~~~----------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGAD-------------------------LTRLPSLVSGE----------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE-------------------------EEECC-----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc-------------------------ccCCCcccCCC-----------
Confidence 479999987899999999999999999997641 11122222210
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
.....|..||||||||||+|+.. +.+.||||+|+|+.+|++.+.+. .+....+++||+||+++
T Consensus 55 -----~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~--~~~~~~i~~ai~~a~~~ 117 (306)
T 4h6w_A 55 -----ANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESL--KLSQLDLSRAIEQAVNN 117 (306)
T ss_dssp ---------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSC--CCCHHHHHHHHHHHHHT
T ss_pred -----CCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccc--cchHHHHHHHHHHhhcc
Confidence 12334678999999999998742 23489999999999999865432 36788899999999999
Q ss_pred CCcEEEeccCCCC-ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCcee
Q 040503 293 GVDVISASLGSIA-REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMV 371 (767)
Q Consensus 293 gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~ 371 (767)
+++|||+|||... .......+..++..+.++|++||++|||+|......++..+++|+|||++..
T Consensus 118 g~~vi~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 183 (306)
T 4h6w_A 118 GANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------------- 183 (306)
T ss_dssp TCSEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------
T ss_pred cceeeeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------
Confidence 9999999999752 2344566788888999999999999999997776667778999999986532
Q ss_pred EeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEe
Q 040503 372 IKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILV 451 (767)
Q Consensus 372 ~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~ 451 (767)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEe
Q 040503 452 SSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTA 531 (767)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 531 (767)
+.++.||++|+. ..||||+|
T Consensus 184 -------------------------------------------------------~~~~~~s~~g~~-----~~~~di~A 203 (306)
T 4h6w_A 184 -------------------------------------------------------GKPVDFSNWGDA-----YQKQGILA 203 (306)
T ss_dssp -------------------------------------------------------SCBCSSSCBCHH-----HHHHEEEE
T ss_pred -------------------------------------------------------CCccccccccCC-----cCcceeec
Confidence 456788999854 46899999
Q ss_pred CCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHh----CCCCCHHHHHHHHHhccccccCCCCc
Q 040503 532 PGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL----HPDWSPAAIKSAIMTTARAEDSSNRP 607 (767)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~sp~~ik~~L~~TA~~~~~~g~~ 607 (767)
||++|+++++.. .|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+
T Consensus 204 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-- 268 (306)
T 4h6w_A 204 PGKDILGAKPNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-- 268 (306)
T ss_dssp ECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT--
T ss_pred CCcCcccccCCC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC--
Confidence 999999998763 7999999999999999999999864 699999999999999999874332
Q ss_pred ccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 608 ILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 608 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
......||+|+||+.+|++.
T Consensus 269 --------~~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 269 --------TDDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp --------CSCGGGGTTCBCCHHHHHHH
T ss_pred --------CCCCCCcceeecCHHHHHHH
Confidence 22345799999999999973
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=433.67 Aligned_cols=270 Identities=20% Similarity=0.136 Sum_probs=216.5
Q ss_pred ccccccCCCCC--ceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCC
Q 040503 133 DSAWKKARFGE--DVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNP 210 (767)
Q Consensus 133 ~~~~~~~~~G~--gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 210 (767)
..+|+. .+|+ ||+||||||||| +||+|.++ ++..++|..+-
T Consensus 33 ~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~--------------------------~~~~~~~~~~~--------- 75 (347)
T 2iy9_A 33 TETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS--------------------------EFAKFSFTQDG--------- 75 (347)
T ss_dssp CHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC--------------------------EEEEEECBTTC---------
T ss_pred HHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC--------------------------cccCCcccCCC---------
Confidence 478988 8999 999999999999 99999753 33444444320
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh
Q 040503 211 DAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI 290 (767)
Q Consensus 211 ~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~ 290 (767)
.+.....+.|..||||||||||+|. .|+ .||||+|+|+.+|++++.+ .. ++++||+||+
T Consensus 76 ---~~~~~~~~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~~~----~~--~~~~ai~~a~ 134 (347)
T 2iy9_A 76 ---SPFPVKKSEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPDGV----QD--SWIRAIESIM 134 (347)
T ss_dssp ---CSSCCSSSHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSSBC----TT--HHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecCCC----HH--HHHHHHHHHH
Confidence 0011224567889999999999997 233 8999999999999997754 22 9999999999
Q ss_pred hc------CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-------CCcccCCC----------c
Q 040503 291 HD------GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDD-------GSVENVAP----------W 347 (767)
Q Consensus 291 ~~------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------~~~~~~~p----------~ 347 (767)
++ |++|||||||..........+..++..+.++|++||+||||+|... ..+++..+ +
T Consensus 135 ~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~ 214 (347)
T 2iy9_A 135 SNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDP 214 (347)
T ss_dssp TCTTSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCC
T ss_pred hhhhcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCC
Confidence 99 9999999999764344567788888899999999999999999753 34445567 9
Q ss_pred eEEeccccC--cceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEE
Q 040503 348 ILTVGASTT--DREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKIL 425 (767)
Q Consensus 348 vitVgA~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 425 (767)
+|+|||++. +...
T Consensus 215 vi~Vga~~~~~~g~~----------------------------------------------------------------- 229 (347)
T 2iy9_A 215 VIRVAALAQYRKGET----------------------------------------------------------------- 229 (347)
T ss_dssp EEEEEEECCCCTTSC-----------------------------------------------------------------
T ss_pred EEEEEEcccCCCCce-----------------------------------------------------------------
Confidence 999999764 2100
Q ss_pred EEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCC
Q 040503 426 ICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRP 505 (767)
Q Consensus 426 l~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 505 (767)
...
T Consensus 230 -----------------------------------------------------------------------------~~~ 232 (347)
T 2iy9_A 230 -----------------------------------------------------------------------------PVL 232 (347)
T ss_dssp -----------------------------------------------------------------------------CCB
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 000
Q ss_pred CCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCC
Q 040503 506 SRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDW 585 (767)
Q Consensus 506 ~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~ 585 (767)
....+.||++||+ ||||+|||++|+++++.. .|..++|||||||||||++|||+|++|+|
T Consensus 233 ~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~l 292 (347)
T 2iy9_A 233 HGGGITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRA 292 (347)
T ss_dssp CCCSSSCBCBCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cCCCCCCCCCCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCC
Confidence 1345799999984 669999999999998753 79999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 586 SPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 586 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
++.+||++|++||+++... ....+|+|+||+.+|++.
T Consensus 293 t~~~v~~~L~~tA~~~~~~-------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 293 TATELKRTLLESADKYPSL-------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp CHHHHHHHHHHHSEECGGG-------------TTTSGGGEECCHHHHHHH
T ss_pred CHHHHHHHHHHhCccCCCC-------------CCccccCCEecHHHHHHH
Confidence 9999999999999886432 135899999999999975
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=409.27 Aligned_cols=235 Identities=26% Similarity=0.359 Sum_probs=201.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+.+|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~------------ 60 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR--------------------------SVSGYDFVDN------------ 60 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC--------------------------EEEEEETTTT------------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC--------------------------ccccccccCC------------
Confidence 57899999999999999999999999999753 3333444332
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..+++++||+|++++
T Consensus 61 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g---~~~~~~~~~ai~~a~~~ 118 (284)
T 1sh7_A 61 -----DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSG---SGTTSGVISGVDWVAQN 118 (284)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHHHhC
Confidence 2245688999999999999873 6899999999999998776 47889999999999984
Q ss_pred --CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcccCCCceEEeccccCcceeeeeEEecCc
Q 040503 293 --GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SVENVAPWILTVGASTTDREFTSYVTLGNK 369 (767)
Q Consensus 293 --gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~~ 369 (767)
+++|||||||.. ....+..++.++.++|++||+||||+|.... ..++..|++|+|||++.
T Consensus 119 ~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 181 (284)
T 1sh7_A 119 ASGPSVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS------------- 181 (284)
T ss_dssp CCSSEEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT-------------
T ss_pred CCCCcEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC-------------
Confidence 799999999987 3466778888899999999999999997543 34456799999998643
Q ss_pred eeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEE
Q 040503 370 MVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMI 449 (767)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i 449 (767)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceE
Q 040503 450 LVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDV 529 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 529 (767)
.+.++.||++||.. ||
T Consensus 182 --------------------------------------------------------~~~~~~~S~~G~~~--------di 197 (284)
T 1sh7_A 182 --------------------------------------------------------SDSRSSFSNWGSCV--------DL 197 (284)
T ss_dssp --------------------------------------------------------TSBBCTTCCBSTTC--------CE
T ss_pred --------------------------------------------------------CCCcCcccCCCCcc--------EE
Confidence 14678999999976 99
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
+|||++|+++++.. .|..++|||||||||||++|||+|++|+|+++|||++|++||++.
T Consensus 198 ~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 256 (284)
T 1sh7_A 198 FAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN 256 (284)
T ss_dssp EEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred EeccCCeEEecCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 99999999998763 799999999999999999999999999999999999999999875
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=424.52 Aligned_cols=298 Identities=23% Similarity=0.316 Sum_probs=220.0
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCC-CCcccCCccc---ceeEEcccchhhhhccC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDN-YKGVSCNKKL---IGIRYINQGTIEELRAK 208 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ki---~g~~~~~~~~~~~~~~~ 208 (767)
..+|+.+++|+||+||||||||+ +||+|.++-. ..|+ .... ......+.+. .....+.+.+... +
T Consensus 22 ~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~----~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~-- 90 (340)
T 3lpc_A 22 DKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL----PGYD---FISNSQISLDGDGRDADPFDEGDWFDNWACG-G-- 90 (340)
T ss_dssp HHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC----CCEE---CCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS-C--
T ss_pred HHHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc----cCcc---ccCCccccccCCCccCCcccccccccccccc-C--
Confidence 58999999999999999999998 9999976411 1111 0000 0000000000 0000000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHH
Q 040503 209 NPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDL 288 (767)
Q Consensus 209 ~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~ 288 (767)
.+.+.....|..||||||||||+|...++. | +.||||+|+|+.+|+++..+ +..++++++|+|
T Consensus 91 -----~~~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~----~~~~~~~~ai~~ 153 (340)
T 3lpc_A 91 -----RPDPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCG----GYDSDISDGLYW 153 (340)
T ss_dssp -----TTCGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTB----CCHHHHHHHHHH
T ss_pred -----CCCcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCC----CcHHHHHHHHHH
Confidence 111123467899999999999999864432 2 38999999999999998776 788999999999
Q ss_pred hhh----------cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcccCCCceEEeccccCc
Q 040503 289 AIH----------DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG-SVENVAPWILTVGASTTD 357 (767)
Q Consensus 289 a~~----------~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~ 357 (767)
|++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..++..+++|+|||++.
T Consensus 154 a~~~~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~- 230 (340)
T 3lpc_A 154 AAGGRIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS- 230 (340)
T ss_dssp HHTCCCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-
T ss_pred HhcccccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-
Confidence 998 88999999999752 23455777788899999999999999997643 34566789999999643
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHH
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKG 437 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 437 (767)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCC
Q 040503 438 QWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGP 517 (767)
Q Consensus 438 ~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 517 (767)
.+.++.||++||
T Consensus 231 --------------------------------------------------------------------~~~~~~~S~~g~ 242 (340)
T 3lpc_A 231 --------------------------------------------------------------------RGIRASFSNYGV 242 (340)
T ss_dssp --------------------------------------------------------------------TSSBCTTCCBST
T ss_pred --------------------------------------------------------------------CCCcCCCCCCCC
Confidence 246789999998
Q ss_pred CCCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHh-C---CCCCHHHHHHH
Q 040503 518 NMIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL-H---PDWSPAAIKSA 593 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~~sp~~ik~~ 593 (767)
. |||+|||++|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++
T Consensus 243 ~--------~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~ 308 (340)
T 3lpc_A 243 D--------VDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDV 308 (340)
T ss_dssp T--------CCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred C--------ceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHH
Confidence 4 49999999999998764321 11236999999999999999999999998 5 99999999999
Q ss_pred HHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCC
Q 040503 594 IMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPG 636 (767)
Q Consensus 594 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~g 636 (767)
|++||++... .+...+|||+||+.+|++..
T Consensus 309 L~~tA~~~~~-------------~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 309 LVSTTSPFNG-------------RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp HHHTCBCCSS-------------CCSSCCCSSBCCHHHHHHHH
T ss_pred HHhcCCcCCC-------------CCCCCcccceecHHHHHHHH
Confidence 9999987631 23468999999999998753
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=433.62 Aligned_cols=294 Identities=26% Similarity=0.323 Sum_probs=224.1
Q ss_pred ccccc-cCCCCCceEEEEecccCCC------CCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhh
Q 040503 133 DSAWK-KARFGEDVIIANVDSGVWP------ESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEEL 205 (767)
Q Consensus 133 ~~~~~-~~~~G~gV~VgVIDtGid~------~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~ 205 (767)
+.+|. .+++|+||+|||||||||+ .||+|.++ +...+.|.+
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~--------------------------i~~~~~~~~------ 58 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK--------------------------ITALYALGR------ 58 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC--------------------------EEEEEETTT------
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC--------------------------EeeeccccC------
Confidence 47897 7999999999999999999 79999753 333344422
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHH
Q 040503 206 RAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSA 285 (767)
Q Consensus 206 ~~~~~~~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~a 285 (767)
...+.|..||||||||||+|+.. .+.||||+|+|+++|+++..+.. .+..+++.++
T Consensus 59 ------------~~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~-~~~~~~~~~a 114 (434)
T 1wmd_A 59 ------------TNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTL 114 (434)
T ss_dssp ------------TTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHH
T ss_pred ------------CCCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCcc-ccccHHHHHH
Confidence 12456889999999999998641 14799999999999999876521 1245789999
Q ss_pred HHHhhhcCCcEEEeccCCCCccCcccHHHHHHHHH-HhCCCEEEEecCCCCCCCCCc--ccCCCceEEeccccCcceeee
Q 040503 286 YDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHA-MMNGIVSVAAAGNSGPDDGSV--ENVAPWILTVGASTTDREFTS 362 (767)
Q Consensus 286 id~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~ 362 (767)
|++|+++|++|||||||...... .+....++.++ .++|++||+||||+|...... ++.++++|+|||++..+..
T Consensus 115 i~~a~~~g~~Vin~S~G~~~~~~-~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~-- 191 (434)
T 1wmd_A 115 FSQAYSAGARIHTNSWGAAVNGA-YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS-- 191 (434)
T ss_dssp HHHHHHTTCSEEEECCCBCCTTC-CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG--
T ss_pred HHHHHhcCCeEEEecCCCCcCCc-CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcc--
Confidence 99999999999999999874221 23445556555 589999999999999765443 4567999999997653200
Q ss_pred eEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHH
Q 040503 363 YVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQ 442 (767)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 442 (767)
. . .
T Consensus 192 -------------------~----~---------------------~--------------------------------- 194 (434)
T 1wmd_A 192 -------------------F----G---------------------S--------------------------------- 194 (434)
T ss_dssp -------------------G----C---------------------G---------------------------------
T ss_pred -------------------c----C---------------------c---------------------------------
Confidence 0 0 0
Q ss_pred cCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCC
Q 040503 443 AGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDP 522 (767)
Q Consensus 443 ~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 522 (767)
.....+.++.||++||+. +
T Consensus 195 -----------------------------------------------------------~~~~~~~~a~fS~~G~~~--~ 213 (434)
T 1wmd_A 195 -----------------------------------------------------------YADNINHVAQFSSRGPTK--D 213 (434)
T ss_dssp -----------------------------------------------------------GGSCTTSBCTTSCCCCCT--T
T ss_pred -----------------------------------------------------------ccCCCCccccccCCCCCC--C
Confidence 001136789999999998 8
Q ss_pred CcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCC-----CHHHHHHHHHhc
Q 040503 523 AIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDW-----SPAAIKSAIMTT 597 (767)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~-----sp~~ik~~L~~T 597 (767)
+++||||+|||++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++|
T Consensus 214 g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~t 292 (434)
T 1wmd_A 214 GRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG 292 (434)
T ss_dssp SCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred CCCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcC
Confidence 999999999999999998643210000 00113489999999999999999999999999875 899999999999
Q ss_pred cccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCC
Q 040503 598 ARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPG 636 (767)
Q Consensus 598 A~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~g 636 (767)
|+++.. ..+.+.||||++|+.+|++..
T Consensus 293 A~~~~~------------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 293 AADIGL------------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp CBCCSS------------CSSCTTTTTCBCCHHHHHTCE
T ss_pred CcccCC------------CCCCccCCcCeEeHHHhcccc
Confidence 986421 235678999999999999754
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=406.01 Aligned_cols=237 Identities=27% Similarity=0.359 Sum_probs=200.9
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~--------------------------~~~~~d~~~~------------ 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR--------------------------ASSGYDFIDN------------ 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTTT------------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc--------------------------cccCeecCCC------------
Confidence 57899999999999999999999999999753 3333444322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH- 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~- 291 (767)
...+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..++++++|+|+++
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a~~~ 120 (278)
T 2b6n_A 63 -----DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSG---SGSNSGVIAGINWVKNN 120 (278)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCC---CccHHHHHHHHHHHHhC
Confidence 2245688999999999999873 6899999999999998776 4788999999999997
Q ss_pred -cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEEecCc
Q 040503 292 -DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVTLGNK 369 (767)
Q Consensus 292 -~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~~ 369 (767)
.+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.+
T Consensus 121 ~~g~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 184 (278)
T 2b6n_A 121 ASGPAVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN------------ 184 (278)
T ss_dssp CCSSEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------
T ss_pred CCCCeEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC------------
Confidence 58999999999863 4567778888999999999999999976433 34567899999986431
Q ss_pred eeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEE
Q 040503 370 MVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMI 449 (767)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i 449 (767)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceE
Q 040503 450 LVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDV 529 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 529 (767)
+.++.||++||.. ||
T Consensus 185 ---------------------------------------------------------~~~~~~S~~G~~~--------di 199 (278)
T 2b6n_A 185 ---------------------------------------------------------DSRSSFSNYGTCL--------DI 199 (278)
T ss_dssp ---------------------------------------------------------SBBCTTCCBSTTC--------CE
T ss_pred ---------------------------------------------------------CCcCCcCCCCCCC--------eE
Confidence 4678899999865 99
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
+|||++|++++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++.
T Consensus 200 ~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 200 YAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp EEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred EeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 999999999986532 2799999999999999999999999999999999999999999874
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=402.26 Aligned_cols=236 Identities=27% Similarity=0.361 Sum_probs=202.4
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+.+|+||+|||||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------- 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR--------------------------ARVGYDALG------------- 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTS-------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC--------------------------eeccccCCC-------------
Confidence 57899999999999999999999999999753 333333322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..++++++|+|+++.
T Consensus 62 ------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 118 (276)
T 4dzt_A 62 ------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNG---SGSTSGVIAGVDWVTRN 118 (276)
T ss_dssp ------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 245578999999999999873 6999999999999998776 47889999999999987
Q ss_pred --CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc-ccCCCceEEeccccCcceeeeeEEecCc
Q 040503 293 --GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV-ENVAPWILTVGASTTDREFTSYVTLGNK 369 (767)
Q Consensus 293 --gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgA~~~~~~~~~~~~~~~~ 369 (767)
+++|||||||.. ....+..++.++.++|++||+||||+|...... ++..+++|+|||++.
T Consensus 119 ~~~~~vin~S~g~~----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 181 (276)
T 4dzt_A 119 HRRPAVANMSLGGG----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------- 181 (276)
T ss_dssp CCSSEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------
T ss_pred CCCCeEEEECCCCC----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------------
Confidence 899999999976 356678888899999999999999999765443 466789999998543
Q ss_pred eeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEE
Q 040503 370 MVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMI 449 (767)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i 449 (767)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceE
Q 040503 450 LVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDV 529 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 529 (767)
.+.++.||++||.. ||
T Consensus 182 --------------------------------------------------------~~~~~~~S~~g~~~--------dv 197 (276)
T 4dzt_A 182 --------------------------------------------------------SDARASFSNYGSCV--------DL 197 (276)
T ss_dssp --------------------------------------------------------TSBBCTTCCBSTTC--------CE
T ss_pred --------------------------------------------------------CCCcCCcCCCCCCc--------eE
Confidence 24678999999987 99
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhcccccc
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAED 602 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~ 602 (767)
+|||++|++++.... ..|..++|||||||||||++|||+|++|++++++||++|++||++..
T Consensus 198 ~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 198 FAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp EEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred EeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 999999999987642 27999999999999999999999999999999999999999998864
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=402.44 Aligned_cols=240 Identities=27% Similarity=0.351 Sum_probs=201.8
Q ss_pred ccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCC
Q 040503 135 AWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVI 214 (767)
Q Consensus 135 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 214 (767)
.|+. .+|+||+|+|||||||++||+|.++ +...++|.
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~--------------------------~~~~~~~~---------------- 60 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTYY---------------- 60 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEESS----------------
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc--------------------------cccccCCC----------------
Confidence 4543 7999999999999999999999753 33333333
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhcCC
Q 040503 215 PQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGV 294 (767)
Q Consensus 215 ~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~gv 294 (767)
..+.|..||||||||||+|+. .||||+|+|+.+|++++.+ .+..+++++||+|++++++
T Consensus 61 ----~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g---~~~~~~~~~ai~~a~~~~~ 119 (279)
T 2pwa_A 61 ----YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDKN 119 (279)
T ss_dssp ----SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHGG
T ss_pred ----CCCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCC---CcCHHHHHHHHHHHHhcCc
Confidence 134578999999999999873 7899999999999998876 4788999999999999887
Q ss_pred -------cEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEEe
Q 040503 295 -------DVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 295 -------dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
+|||||||.. ..+.+..++.++.++|++||+||||+|..... .++..|++|+|||++.+
T Consensus 120 ~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------- 186 (279)
T 2pwa_A 120 NRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------- 186 (279)
T ss_dssp GSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------
T ss_pred cccCCCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------
Confidence 9999999975 34677888889999999999999999976432 34567999999996432
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
+.++.||++||..
T Consensus 187 ------------------------------------------------------------~~~~~~S~~G~~~------- 199 (279)
T 2pwa_A 187 ------------------------------------------------------------DRRSSFSNYGSVL------- 199 (279)
T ss_dssp ------------------------------------------------------------SBBCTTCCBSTTC-------
T ss_pred ------------------------------------------------------------CCcCCcCCCCCcc-------
Confidence 4678999999976
Q ss_pred ceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCC
Q 040503 527 PDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNR 606 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~ 606 (767)
||+|||++|+++++.. .|..++|||||||||||++|||+|+ |+++|.+||++|++||++..
T Consensus 200 -di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~---- 260 (279)
T 2pwa_A 200 -DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGD---- 260 (279)
T ss_dssp -CEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESC----
T ss_pred -eEEEecCCeEEeecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccc----
Confidence 9999999999999763 7999999999999999999999999 99999999999999998742
Q ss_pred cccCCCCCCCCCCCccCCCccCc
Q 040503 607 PILDQNTGEKATPFAYGAGHVNP 629 (767)
Q Consensus 607 ~~~~~~~~~~~~~~~~G~G~vd~ 629 (767)
...+|+|..|+
T Consensus 261 ------------~~~~~~g~~n~ 271 (279)
T 2pwa_A 261 ------------LSNIPFGTVNL 271 (279)
T ss_dssp ------------CBSCCTTSCCE
T ss_pred ------------cCCCCCCCccE
Confidence 12467787776
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-47 Score=452.23 Aligned_cols=264 Identities=27% Similarity=0.319 Sum_probs=199.3
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-----cCCcE
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH-----DGVDV 296 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~-----~gvdV 296 (767)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..... .+....++.+|.+|++ .|++|
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~-~~t~s~l~~AI~~Aid~a~~~~gadV 336 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGS-METGTALVRAMTKVMELCRDGRRIDV 336 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSS-CBCHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCc-ccChHHHHHHHHHHHHHHhhcCCceE
Confidence 478999999999999985 22 234899999999999998765411 2355678888888877 79999
Q ss_pred EEeccCCCCccCcccHHHHHHHHHH-hCCCEEEEecCCCCCCCCCcc--c--CCCceEEeccccCcceeeeeEEecCcee
Q 040503 297 ISASLGSIAREHLKNTIAIGSFHAM-MNGIVSVAAAGNSGPDDGSVE--N--VAPWILTVGASTTDREFTSYVTLGNKMV 371 (767)
Q Consensus 297 In~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~~~--~--~~p~vitVgA~~~~~~~~~~~~~~~~~~ 371 (767)
||||||........+.+..++.++. ++|++||+||||+|+...+.. + ..+++|+|||++...........
T Consensus 337 INmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----- 411 (1354)
T 3lxu_X 337 INMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----- 411 (1354)
T ss_dssp EEECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------
T ss_pred EEcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-----
Confidence 9999999853334566777888886 899999999999998655443 3 36999999997654311000000
Q ss_pred EeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEe
Q 040503 372 IKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILV 451 (767)
Q Consensus 372 ~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~ 451 (767)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEe
Q 040503 452 SSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTA 531 (767)
Q Consensus 452 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 531 (767)
.....+.++.|||+||+. ++++||||+|
T Consensus 412 --------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaA 439 (1354)
T 3lxu_X 412 --------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCA 439 (1354)
T ss_dssp --------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEE
T ss_pred --------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEe
Confidence 000125789999999998 8999999999
Q ss_pred CCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHH----hCCCCCHHHHHHHHHhccccccCCCCc
Q 040503 532 PGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKT----LHPDWSPAAIKSAIMTTARAEDSSNRP 607 (767)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~g~~ 607 (767)
||++|+++..... +.|..++|||||||||||++|||++ .+|.|++++||++|++||++.+.
T Consensus 440 PG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~---- 504 (1354)
T 3lxu_X 440 PGGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY---- 504 (1354)
T ss_dssp EC--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT----
T ss_pred cCceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC----
Confidence 9999999765321 2789999999999999999999986 89999999999999999987642
Q ss_pred ccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhhccCCCC
Q 040503 608 ILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYICDRGYN 656 (767)
Q Consensus 608 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~~~~~~~ 656 (767)
.+++.||||+||+.+|++..+.|+....+++.|+|.++.+
T Consensus 505 ---------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~ 544 (1354)
T 3lxu_X 505 ---------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNN 544 (1354)
T ss_dssp ---------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTT
T ss_pred ---------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCC
Confidence 2456899999999999999999999999999999998853
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=424.23 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=217.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|||||||||++||+|.++- .....++|.++..
T Consensus 28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~~~---------- 73 (471)
T 1p8j_A 28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------------------DPGASFDVNDQDP---------- 73 (471)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------------------CGGGCEETTTTBS----------
T ss_pred HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------------------CccCcccccCCCC----------
Confidence 689999999999999999999999999998640 0011223332200
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH- 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~- 291 (767)
.+.+...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++ +..+++++|++++++
T Consensus 74 -~p~~~~~~~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~-------g~~~~~~~ai~~a~~~ 137 (471)
T 1p8j_A 74 -DPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD-------GEVTDAVEARSLGLNP 137 (471)
T ss_dssp -CCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS-------SCCCHHHHHHHHTSCT
T ss_pred -CCCCccCCCCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccC-------CchhHHHHHHHhhhcc
Confidence 011112456889999999999999754332 238999999999999985 346789999999999
Q ss_pred cCCcEEEeccCCCCc----cCcccHHHHHHHHHH-----hCCCEEEEecCCCCCCCCC----cccCCCceEEeccccCcc
Q 040503 292 DGVDVISASLGSIAR----EHLKNTIAIGSFHAM-----MNGIVSVAAAGNSGPDDGS----VENVAPWILTVGASTTDR 358 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~----~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~ 358 (767)
++++|||||||.... ......+..++.++. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 138 ~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~- 216 (471)
T 1p8j_A 138 NHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF- 216 (471)
T ss_dssp TTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-
T ss_pred CCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-
Confidence 899999999998631 112233445555554 3699999999999975322 12345899999996532
Q ss_pred eeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHH
Q 040503 359 EFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQ 438 (767)
Q Consensus 359 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 438 (767)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCC
Q 040503 439 WAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPN 518 (767)
Q Consensus 439 ~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 518 (767)
+.++.||++||.
T Consensus 217 --------------------------------------------------------------------g~~a~~S~~g~~ 228 (471)
T 1p8j_A 217 --------------------------------------------------------------------GNVPWYSEACSS 228 (471)
T ss_dssp --------------------------------------------------------------------SCCCTTCCBCTT
T ss_pred --------------------------------------------------------------------CCcccccCCCCc
Confidence 467899999998
Q ss_pred CCCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 040503 519 MIDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTA 598 (767)
Q Consensus 519 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA 598 (767)
. ....+|...+||.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||
T Consensus 229 ~--~~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA 294 (471)
T 1p8j_A 229 T--LATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTS 294 (471)
T ss_dssp C--CEEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHC
T ss_pred c--eEEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcC
Confidence 7 4455666666678999997642 2689999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccc
Q 040503 599 RAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVY 639 (767)
Q Consensus 599 ~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~ 639 (767)
++.+........ ..........||||+||+.+|++....+
T Consensus 295 ~~~~~~~~~~~~-n~~g~~~~~~~G~G~vda~~Av~~a~~~ 334 (471)
T 1p8j_A 295 KPAHLNADDWAT-NGVGRKVSHSYGYGLLDAGAMVALAQNW 334 (471)
T ss_dssp BCTTCCCSCCEE-CTTSCEEBTTTBTCBCCHHHHHHHHHTC
T ss_pred ccCCCCCCCcee-cCCCcccCCCCCCEEEcHhHHHHHhhcc
Confidence 987543222211 1112224568999999999999865443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=418.19 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=215.5
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|||||||||++||+|.++- + ..+.++|.++.
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~-----------------~~~~~d~~~~~----------- 88 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C-----------------AEGSWDFNDNT----------- 88 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C-----------------GGGCEETTTTB-----------
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c-----------------ccCcccCCCCC-----------
Confidence 689999999999999999999999999998641 0 11223343220
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
.+..+..|..||||||||||+|...++. | +.||||+|+|+.+|+++.. +...++++||+||+++
T Consensus 89 ---~~~~p~~d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-----~~~~~~~~ai~~a~~~ 152 (503)
T 2id4_A 89 ---NLPKPRLSDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-----ITTEDEAASLIYGLDV 152 (503)
T ss_dssp ---SCCCCCSTTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-----CCHHHHHHHTTTTTTT
T ss_pred ---CCCCCCCCCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-----CChHHHHHHHHhHhhc
Confidence 0112235788999999999999764332 2 3799999999999998742 6788999999999998
Q ss_pred CCcEEEeccCCCCc----cCcccHHHHHHHHHH-----hCCCEEEEecCCCCCCCCC--cc--cCCCceEEeccccCcce
Q 040503 293 GVDVISASLGSIAR----EHLKNTIAIGSFHAM-----MNGIVSVAAAGNSGPDDGS--VE--NVAPWILTVGASTTDRE 359 (767)
Q Consensus 293 gvdVIn~SlG~~~~----~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~--~~~p~vitVgA~~~~~~ 359 (767)
+ +|||||||.... ......+..++.++. .+|++||+||||+|..... .. ...+++|+|||++.+
T Consensus 153 ~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~-- 229 (503)
T 2id4_A 153 N-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK-- 229 (503)
T ss_dssp C-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT--
T ss_pred C-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC--
Confidence 8 999999998631 112344666666665 4799999999999965332 22 245789999986532
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
+.++.||++||..
T Consensus 230 -------------------------------------------------------------------~~~a~~S~~g~~~ 242 (503)
T 2id4_A 230 -------------------------------------------------------------------DLHPPYSEGCSAV 242 (503)
T ss_dssp -------------------------------------------------------------------SCCCTTCCCCTTE
T ss_pred -------------------------------------------------------------------CCcCCcCCCCCcc
Confidence 4678999999988
Q ss_pred CCCCcccceEEe----CCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 040503 520 IDPAIFKPDVTA----PGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIM 595 (767)
Q Consensus 520 ~~~~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~ 595 (767)
|++| ||..|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|+
T Consensus 243 --------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~ 302 (503)
T 2id4_A 243 --------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSI 302 (503)
T ss_dssp --------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred --------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8988 899999995432 2799999999999999999999999999999999999999
Q ss_pred hccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCcc
Q 040503 596 TTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLV 638 (767)
Q Consensus 596 ~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv 638 (767)
+||++++....+-.............||||+||+.+|++...-
T Consensus 303 ~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 303 LSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp HHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred hccccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHhc
Confidence 9999875431111100111222356899999999999986443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=415.80 Aligned_cols=247 Identities=21% Similarity=0.243 Sum_probs=188.8
Q ss_pred cccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCC
Q 040503 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAV 213 (767)
Q Consensus 134 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (767)
..|..+.+|+||+|+|||||||++||+|.++- ......+..+.+
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------------------------~~~~~~~v~~~d----------- 60 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------------------------MVTDFENVPEED----------- 60 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE-------------------------EEEEEECCCCCC-----------
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc-------------------------cccCcccccCCC-----------
Confidence 47888999999999999999999999998640 010111110000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc-
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD- 292 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~- 292 (767)
.......+.|..||||||||||+|+. .||||+|+|+.+|++++.+ .++.+++++||+|+++.
T Consensus 61 g~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G---~g~~s~ii~ai~~a~~~~ 123 (546)
T 2qtw_B 61 GTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQG---KGTVSGTLIGLEFIRKSQ 123 (546)
T ss_dssp -------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---EEEHHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHhh
Confidence 00001245688999999999999874 6899999999999998776 47789999999999974
Q ss_pred -----CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEEe
Q 040503 293 -----GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVTL 366 (767)
Q Consensus 293 -----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (767)
+++|||||||+. ....+..++.++.++|++||+||||+|.+... .++..|++|+|||++.+...
T Consensus 124 ~~~~~g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------ 193 (546)
T 2qtw_B 124 LVQPVGPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------ 193 (546)
T ss_dssp HHSCCSCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB------
T ss_pred hhccCCCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc------
Confidence 899999999975 34677888889999999999999999976433 34567999999997643200
Q ss_pred cCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCce
Q 040503 367 GNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAV 446 (767)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~ 446 (767)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCccc
Q 040503 447 GMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFK 526 (767)
Q Consensus 447 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 526 (767)
...-..||++||.+
T Consensus 194 -----------------------------------------------------------a~~s~~fSn~G~~v------- 207 (546)
T 2qtw_B 194 -----------------------------------------------------------VTLGTLGTNFGRCV------- 207 (546)
T ss_dssp -----------------------------------------------------------CEETTEECCBSTTC-------
T ss_pred -----------------------------------------------------------ccccCCcCCCCCcc-------
Confidence 00001289999854
Q ss_pred ceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 527 PDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.+.
T Consensus 208 -DI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 208 -DLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp -CEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred -eEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 99999999999987632 2799999999999999999999999999999999999999999764
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=391.47 Aligned_cols=230 Identities=27% Similarity=0.374 Sum_probs=196.6
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.. +|+||+|||||||||++||+|.++ +...+.|..
T Consensus 23 ~~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------- 62 (279)
T 3f7m_A 23 AYAYDTS-AGAGACVYVIDTGVEDTHPDFEGR--------------------------AKQIKSYAS------------- 62 (279)
T ss_dssp SEEECTT-TTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEECSS-------------
T ss_pred ceeecCC-CCCCCEEEEEcCCCCCCChhhccc--------------------------cccccCCCC-------------
Confidence 3567766 999999999999999999999754 333333322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...|..||||||||||+|+. .||||+|+|+.+|+++..+ .+..++++++|+|++++
T Consensus 63 -------~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 118 (279)
T 3f7m_A 63 -------TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSG---SGSLSNIIAGMDFVASD 118 (279)
T ss_dssp -------SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCC---CcCHHHHHHHHHHHHhc
Confidence 12278999999999999873 6999999999999998776 47889999999999988
Q ss_pred C-------CcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc-ccCCCceEEeccccCcceeeeeE
Q 040503 293 G-------VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV-ENVAPWILTVGASTTDREFTSYV 364 (767)
Q Consensus 293 g-------vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgA~~~~~~~~~~~ 364 (767)
+ ++|||||||.. ....+..++.++.++|++||+||||+|...... ++..+++|+|||++.
T Consensus 119 ~~~~~~~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------- 186 (279)
T 3f7m_A 119 RQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS-------- 186 (279)
T ss_dssp GGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------
T ss_pred cccccCCCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC--------
Confidence 6 99999999965 456788888899999999999999999764433 456799999999543
Q ss_pred EecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcC
Q 040503 365 TLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAG 444 (767)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G 444 (767)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCc
Q 040503 445 AVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAI 524 (767)
Q Consensus 445 ~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 524 (767)
.+.++.||++||..
T Consensus 187 -------------------------------------------------------------~~~~~~~S~~g~~~----- 200 (279)
T 3f7m_A 187 -------------------------------------------------------------NDVRSTFSNYGRVV----- 200 (279)
T ss_dssp -------------------------------------------------------------TSBBCTTCCBSTTC-----
T ss_pred -------------------------------------------------------------CCCCCCCCCCCCCC-----
Confidence 24678999999976
Q ss_pred ccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 040503 525 FKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAE 601 (767)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 601 (767)
||+|||++|+++++.. .|..++|||||||||||++|||+|++|. +|++||++|++||++.
T Consensus 201 ---di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~ 260 (279)
T 3f7m_A 201 ---DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKN 260 (279)
T ss_dssp ---CEEEECSSEEEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEES
T ss_pred ---eEEECCCCeEeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccc
Confidence 9999999999998763 7899999999999999999999999999 9999999999999875
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=411.86 Aligned_cols=299 Identities=21% Similarity=0.241 Sum_probs=202.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|..+++|+||+|||||||||++||+|.++ ...+.++|..+.
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------------------------~~~~~~~~~~~~----------- 103 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------------------------VRPGSKNVVTGS----------- 103 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------------------------BCSCCBCTTTSS-----------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------------------------cccCcceeecCC-----------
Confidence 68999999999999999999999999999864 011222232221
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHH-HHhhh
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAY-DLAIH 291 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai-d~a~~ 291 (767)
.+..+..|.+||||||||||||.. ++ .| +.||||+|+|+.+|++++.+ .+..++++.|+ +++..
T Consensus 104 ---~dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~---~~~~~~~~~a~~~~~~~ 168 (600)
T 3hjr_A 104 ---DDPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNS---QQLQKDWLYALGDSNAS 168 (600)
T ss_dssp ---SCCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTC---CCCHHHHHHHTTSSHHH
T ss_pred ---CCCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCC---CccHHHHHHHhhhhhhh
Confidence 112234467899999999999863 11 23 38999999999999998776 46677777776 66788
Q ss_pred cCCcEEEeccCCCCc--cCcc----cHHHHHHHHH--HhCCCEEEEecCCCCCCCCCc----------------------
Q 040503 292 DGVDVISASLGSIAR--EHLK----NTIAIGSFHA--MMNGIVSVAAAGNSGPDDGSV---------------------- 341 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~--~~~~----~~~~~a~~~a--~~~Gi~vV~AAGN~G~~~~~~---------------------- 341 (767)
++++|||||||.... .... ..+..++..+ ..+|+++|+||||.+......
T Consensus 169 ~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~ 248 (600)
T 3hjr_A 169 RDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDP 248 (600)
T ss_dssp HTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSG
T ss_pred cCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccC
Confidence 899999999997621 1111 1122222222 258999999999976321000
Q ss_pred ccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCcc
Q 040503 342 ENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQ 421 (767)
Q Consensus 342 ~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 421 (767)
....+++|+|||
T Consensus 249 ~~~~~~~IsVgA-------------------------------------------------------------------- 260 (600)
T 3hjr_A 249 SNSNFWNLVVSA-------------------------------------------------------------------- 260 (600)
T ss_dssp GGGSSSEEEEEE--------------------------------------------------------------------
T ss_pred ccccCcceEEee--------------------------------------------------------------------
Confidence 001112222222
Q ss_pred ceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceee
Q 040503 422 GKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEF 501 (767)
Q Consensus 422 gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 501 (767)
T Consensus 261 -------------------------------------------------------------------------------- 260 (600)
T 3hjr_A 261 -------------------------------------------------------------------------------- 260 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCceecccCCCCCCCCCCcccceEEeCCCcE-------E-EeecCCCCCC-------------CCCCCCCccceee
Q 040503 502 NTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDI-------I-AAFTEASGPS-------------PDETHKRRIPYIM 560 (767)
Q Consensus 502 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I-------~-sa~~~~~~~~-------------~~~~~~~~~~y~~ 560 (767)
....+.++.||++|+.. +++|||.++ . ...++..... ..........|..
T Consensus 261 -~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (600)
T 3hjr_A 261 -LNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGV 331 (600)
T ss_dssp -ECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEE
T ss_pred -ecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceec
Confidence 22346889999999988 999999763 2 2222111000 0011122346889
Q ss_pred ecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccC-------------------CCCCCCCCCCc
Q 040503 561 MSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILD-------------------QNTGEKATPFA 621 (767)
Q Consensus 561 ~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~-------------------~~~~~~~~~~~ 621 (767)
++|||||||||||++|||+|+||+||++|||++|++||++++....|+.. .......-...
T Consensus 332 ~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~ 411 (600)
T 3hjr_A 332 MNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPT 411 (600)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTT
T ss_pred cccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccc
Confidence 99999999999999999999999999999999999999999876655321 01112223457
Q ss_pred cCCCccCccCcCCCCccc
Q 040503 622 YGAGHVNPNSALDPGLVY 639 (767)
Q Consensus 622 ~G~G~vd~~~A~~~glv~ 639 (767)
||+|+||+.+|++....+
T Consensus 412 yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 412 YGFGLIDVNKALELAANH 429 (600)
T ss_dssp TBTCBCCHHHHHHHHTTC
T ss_pred cCCceecHHHHHHHhhcC
Confidence 999999999999754443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-25 Score=248.84 Aligned_cols=98 Identities=26% Similarity=0.352 Sum_probs=77.6
Q ss_pred cccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh---cCCcEEEeccCCCCccC---cccHHHHHHHHHHhCCC
Q 040503 252 TAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH---DGVDVISASLGSIAREH---LKNTIAIGSFHAMMNGI 325 (767)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~---~gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi 325 (767)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||...... +...+..++.+|..+||
T Consensus 273 ~~~gvAp~a~i~~~~~~--------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 344 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP--------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGV 344 (552)
T ss_dssp HHHHHCTTSEEEEEECC--------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCeEEEEEcC--------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCe
Confidence 34899999999999973 345789999999998 78999999999874221 23456677778889999
Q ss_pred EEEEecCCCCCCC--------CCcccCCCceEEeccccCc
Q 040503 326 VSVAAAGNSGPDD--------GSVENVAPWILTVGASTTD 357 (767)
Q Consensus 326 ~vV~AAGN~G~~~--------~~~~~~~p~vitVgA~~~~ 357 (767)
+||+||||+|... ...++.+|+|++||+++..
T Consensus 345 ~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 345 TVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EEEEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 9999999999653 2334567999999998653
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-22 Score=215.30 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=79.8
Q ss_pred cccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh-cCCcEEEeccCCCCcc----CcccHHHHHHHHHHhCCCEEE
Q 040503 254 KGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH-DGVDVISASLGSIARE----HLKNTIAIGSFHAMMNGIVSV 328 (767)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~-~gvdVIn~SlG~~~~~----~~~~~~~~a~~~a~~~Gi~vV 328 (767)
..+||+++++.|++.+... +..++++++|+||++ ++++|||||||..... .+...+..++.+|..+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~~----~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv 165 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA----SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 165 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS----STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCCCCcEEEEEeCCCCC----cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 3468999999999986543 678899999999998 8999999999986311 223467777778889999999
Q ss_pred EecCCCCCCCC-------------CcccCCCceEEeccccCc
Q 040503 329 AAAGNSGPDDG-------------SVENVAPWILTVGASTTD 357 (767)
Q Consensus 329 ~AAGN~G~~~~-------------~~~~~~p~vitVgA~~~~ 357 (767)
+||||+|...+ ..++.+|+|++||+++..
T Consensus 166 ~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 166 VSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp EECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred EEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99999997542 233567999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-10 Score=127.73 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=63.4
Q ss_pred cccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhh--hcCCcEEEeccCCCCcc---CcccHHHHHHHHHHhCCCEEE
Q 040503 254 KGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAI--HDGVDVISASLGSIARE---HLKNTIAIGSFHAMMNGIVSV 328 (767)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~--~~gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV 328 (767)
.+++++..++.|..-... ...+.++..+++.. .+-++|||+|||..... .+...+...+.++..+||.|+
T Consensus 262 ~a~~~~i~~~~~~~~g~~-----~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~ 336 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH-----EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLL 336 (544)
T ss_dssp HHHSTTSEEEEECCCSCC-----TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hccCCCceEEEEecCCcc-----cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 455666666655432111 12334555454433 34589999999987422 122445566677889999999
Q ss_pred EecCCCCCCCC----------CcccCCCceEEeccccC
Q 040503 329 AAAGNSGPDDG----------SVENVAPWILTVGASTT 356 (767)
Q Consensus 329 ~AAGN~G~~~~----------~~~~~~p~vitVgA~~~ 356 (767)
+|+||+|.... ..++.+|||++||+++.
T Consensus 337 ~ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 337 FASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp EECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred EecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99999996431 33456899999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-10 Score=98.94 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEE
Q 040503 26 AKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSV 105 (767)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v 105 (767)
.+++|||+|++... ......|++|+.+++.+ +....++.++|++.|+||+++++++++++|+++|+|.+|
T Consensus 36 ip~~YIV~lk~~~~---------~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~V 105 (114)
T 2w2n_P 36 LPGTYVVVLKEETH---------LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105 (114)
T ss_dssp EEEEEEEEECTTCC---------HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCcEEEEECCCCC---------HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEE
Confidence 46789999998664 24556888999988764 334678999999999999999999999999999999999
Q ss_pred EeCccccc
Q 040503 106 FPDEGAKL 113 (767)
Q Consensus 106 ~~~~~~~~ 113 (767)
|+|+.++.
T Consensus 106 E~D~~v~~ 113 (114)
T 2w2n_P 106 EEDSSVFA 113 (114)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99998764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=84.87 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEE
Q 040503 25 AAKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVS 104 (767)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~ 104 (767)
..+++|||+||++... ... +.++++ ....++.++|++ |+||+++++++++++|+++|+|.+
T Consensus 6 ~i~~~YIV~~k~~~~~--------~~~---~~~~~~-------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~ 66 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS--------CAK---KEDVIS-------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAY 66 (80)
T ss_dssp --CCEEEEEECTTCCS--------HHH---HHHHHH-------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEE
T ss_pred cCCCCEEEEECCCCCh--------HHH---HHHHHH-------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccE
Confidence 3568999999987653 111 222222 124689999998 999999999999999999999999
Q ss_pred EEeCcccccCccC
Q 040503 105 VFPDEGAKLHTTR 117 (767)
Q Consensus 105 v~~~~~~~~~~~~ 117 (767)
||+|+.++++++.
T Consensus 67 Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 67 VEEDKLYRALSAT 79 (80)
T ss_dssp EEECCEEEECCC-
T ss_pred EEeCcEEEEeeec
Confidence 9999999988764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-08 Score=89.32 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEE
Q 040503 26 AKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSV 105 (767)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v 105 (767)
.+++|||+||+.... .....|.+++..+..+ +....++.++|++.|+||+++++++++++|+++|+|.+|
T Consensus 46 Ip~~YIV~~K~~~~~---------~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~V 115 (124)
T 2qtw_A 46 LPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115 (124)
T ss_dssp EEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCCEEEEECCCCCH---------HHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEE
Confidence 357899999997652 3445555566554321 113468999999999999999999999999999999999
Q ss_pred EeCccccc
Q 040503 106 FPDEGAKL 113 (767)
Q Consensus 106 ~~~~~~~~ 113 (767)
++|+.++.
T Consensus 116 E~D~~v~a 123 (124)
T 2qtw_A 116 EEDSSVFA 123 (124)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-07 Score=77.14 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEc-ceeeeEEEEcCHHHHHHhhCC--CCeEE
Q 040503 28 KPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYG-RFINGFGAVLEEEHAKQLENH--PGVVS 104 (767)
Q Consensus 28 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~~g~~~~~~~~~~~~l~~~--~~V~~ 104 (767)
+.|||+||+... ......|.+++... ...+.+.|+ ..|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~---------~~~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVS---------EDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCC---------HHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCC---------HHHHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 589999999765 24456666666654 247889994 799999999999999999999 89999
Q ss_pred EEeCccccc
Q 040503 105 VFPDEGAKL 113 (767)
Q Consensus 105 v~~~~~~~~ 113 (767)
||+|+.+++
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999998754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=5e-06 Score=80.38 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=72.9
Q ss_pred ccCcccCCCCCCCC-------ccceEEEEecCC--chhHHHHHHHHcCceEEEEeccCCCCccc--c--cccccccEEEe
Q 040503 406 DASECKKGSIDPAK-------VQGKILICYGAR--YGDEKGQWAAQAGAVGMILVSSKESGNKV--L--NMVHHLPTAHL 472 (767)
Q Consensus 406 ~~~~c~~~~~~~~~-------~~gkivl~~~g~--~~~~~~~~~~~~G~~g~i~~~~~~~~~~~--~--~~~~~~p~~~i 472 (767)
....|.+..+.... .+|||+|+.||. .|.+|..+++++||.++|+||+...+... . .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 46789987653222 478999999997 89999999999999999999985322211 1 12247999999
Q ss_pred ehhhHHHHHHHHhcCCCceEEEecC
Q 040503 473 NYTDGESVYAYINSTQNPTASMTNS 497 (767)
Q Consensus 473 ~~~~g~~l~~~~~~~~~~~~~i~~~ 497 (767)
+..+|+.|++++..+...+++|...
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECC
Confidence 9999999999999998888887654
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00031 Score=55.40 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=40.5
Q ss_pred cccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEEEeCcccc
Q 040503 67 EEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAK 112 (767)
Q Consensus 67 ~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v~~~~~~~ 112 (767)
+..+.++.+.|. .+++++++++++.++.|+++|+|++|++|...+
T Consensus 19 ~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 19 LGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 344679999998 899999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.07 Score=58.51 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCCCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCcc--cc-cccccccEEEeehhhHHHHHHHHh
Q 040503 415 IDPAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGNK--VL-NMVHHLPTAHLNYTDGESVYAYIN 485 (767)
Q Consensus 415 ~~~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 485 (767)
+...+++|||+|+.++. .+..|..+++++||.|+|++++...... .. .....+|...|+..+++.|+.++.
T Consensus 108 ~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 33447999999999999 7999999999999999999998642211 11 134578999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.23 Score=54.70 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=58.4
Q ss_pred CCCccceEEEEecCC-c---------hhHH----HHHHHHcCceEEEEeccCCCCcc--------cccccccccEEEeeh
Q 040503 417 PAKVQGKILICYGAR-Y---------GDEK----GQWAAQAGAVGMILVSSKESGNK--------VLNMVHHLPTAHLNY 474 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~---------~~~~----~~~~~~~G~~g~i~~~~~~~~~~--------~~~~~~~~p~~~i~~ 474 (767)
+.+++|||||+.++. . +..| ..+++++||.|+|++++...... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 468999999999865 2 2333 34689999999999987542211 111235799999999
Q ss_pred hhHHHHHHHHhcCCCceEEEec
Q 040503 475 TDGESVYAYINSTQNPTASMTN 496 (767)
Q Consensus 475 ~~g~~l~~~~~~~~~~~~~i~~ 496 (767)
.+++.|+..+..+...++++..
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~ 225 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLEL 225 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEE
Confidence 9999999999887666666543
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.2 Score=44.52 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=43.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
.+.+.++.|+|+|+.+..|+.....| .+++|...++ ++|+++.++|+|.+
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P 90 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEP 90 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECC
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEc
Confidence 57888899999999888888776543 7788999999 78999999999999
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=92.08 E-value=0.18 Score=58.03 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=53.4
Q ss_pred CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCCc------------------cccc----------------
Q 040503 418 AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESGN------------------KVLN---------------- 462 (767)
Q Consensus 418 ~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~~------------------~~~~---------------- 462 (767)
-+++|||+|+.+|. .+..|..+++++||.|+|++++..... ...+
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 47999999999999 899999999999999999999753210 0000
Q ss_pred ccccccEEEeehhhHHHHHHHHh
Q 040503 463 MVHHLPTAHLNYTDGESVYAYIN 485 (767)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~ 485 (767)
....||+..|+..+++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 02368999999999999987554
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=91.70 E-value=0.28 Score=56.96 Aligned_cols=69 Identities=28% Similarity=0.483 Sum_probs=54.4
Q ss_pred CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCC-----C--------------------------Cccccc---
Q 040503 418 AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKE-----S--------------------------GNKVLN--- 462 (767)
Q Consensus 418 ~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~-----~--------------------------~~~~~~--- 462 (767)
.+++|||+|+.+|. .+.+|..+++++||.|+|+|++.. + |+...+
T Consensus 151 ~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~p 230 (707)
T 3fed_A 151 INCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYP 230 (707)
T ss_dssp CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSC
T ss_pred CCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCCc
Confidence 46999999999999 899999999999999999998621 0 110000
Q ss_pred --------------ccccccEEEeehhhHHHHHHHHhc
Q 040503 463 --------------MVHHLPTAHLNYTDGESVYAYINS 486 (767)
Q Consensus 463 --------------~~~~~p~~~i~~~~g~~l~~~~~~ 486 (767)
....||++.|+..+++.|+..+..
T Consensus 231 s~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 231 AKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred ccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 024689999999999999987754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.14 E-value=0.26 Score=60.52 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=22.6
Q ss_pred CCCCCceEEEEecccCCCCCCCcc
Q 040503 139 ARFGEDVIIANVDSGVWPESKSFA 162 (767)
Q Consensus 139 ~~~G~gV~VgVIDtGid~~Hp~f~ 162 (767)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 579999999999999999999995
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.42 Score=52.57 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=27.9
Q ss_pred ccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecC
Q 040503 502 NTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTE 542 (767)
Q Consensus 502 ~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 542 (767)
.....+.++.||++||.. ||+|||++|+++++.
T Consensus 179 A~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 179 AVDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp EECTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred EECCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 344457899999999876 999999999999874
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.96 E-value=4.5 Score=36.59 Aligned_cols=54 Identities=11% Similarity=-0.048 Sum_probs=42.8
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecC----CCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSEI----TGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~p----~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+-+.+|+|.|..+.+|.+..... ..--++++|..-++ .+|+++++.|++.+
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYV 100 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECB
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEE
Confidence 35667788999999999999975321 12247788999888 88999999999986
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.45 E-value=1.3 Score=38.13 Aligned_cols=54 Identities=11% Similarity=0.213 Sum_probs=42.5
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec-CCCceEEEEcCEEEEeeCCcEEEEEEEEEE
Q 040503 692 GTITFTRKVKNVGAANSTYKARTSE-ITGVSTIVEPSILNFTKYGEEKTFKVAFSV 746 (767)
Q Consensus 692 ~~~t~~rtvtnv~~~~~ty~~~~~~-p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~ 746 (767)
...+.+.+++|.|+.+..|+..... +.+...+++|..-.+ .+|++++++|+|.+
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSS 80 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEEC
Confidence 4677788999999999999984311 113347788999888 78999999999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 767 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-41 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-15 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-06 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 5e-04 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 3e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 5e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-06 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 7e-12 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-10 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 8e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 8e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 9e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 154 bits (389), Expect = 3e-41
Identities = 70/430 (16%), Positives = 145/430 (33%), Gaps = 58/430 (13%)
Query: 211 DAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWK 270
+ N + HGTH T + G G P + V
Sbjct: 49 NNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVF 99
Query: 271 PNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAA 330
+S+ + + G +V++ SLG T NG++ +AA
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALNTHYNNGVLLIAA 156
Query: 331 AGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDSYP 390
AGN+G S +++V A ++ + ++ +++ I G
Sbjct: 157 AGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE---------AILS 207
Query: 391 LIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMIL 450
+ + R+A+++ S G + ++ +
Sbjct: 208 TVTVGEGRLADITIGGQSYFSNGVVPHNRL-------------------TPSGTSYAPAP 248
Query: 451 VSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMA 510
+++ +G V+ + N + + + + + + ++K ++
Sbjct: 249 INASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIV 308
Query: 511 FFTSRGPNMIDPAI--FKPDVTAPGVDIIAAFTEA----SGPSPDETHKRRIPYIMMSGT 564
+ S P + +P + D+T P V + A A G S +++ Y +GT
Sbjct: 309 YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGT 368
Query: 565 SMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGA 624
SM+ PHV+G+ LV + HP+ S + +++A+ TA + G
Sbjct: 369 SMATPHVSGVATLVWSYHPECSASQVRAALNATAD------------DLSVAGRDNQTGY 416
Query: 625 GHVNPNSALD 634
G +N +A
Sbjct: 417 GMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 78.5 bits (192), Expect = 1e-15
Identities = 44/239 (18%), Positives = 72/239 (30%), Gaps = 30/239 (12%)
Query: 527 PDVTAPGVDIIAAF-----TEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL 581
V APGV I++ G + + Y GTSM+ PHV G+V ++
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 582 HPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDL 641
P+ P I+ + TA + G G V ++AL L
Sbjct: 398 FPNAKPWQIRKLLENTAF------------DFNGNGWDHDTGYGLVKLDAALQGPLPTQG 445
Query: 642 TFEDYLGYICDRGYNQSTIDLFTAPKKFTCPKSFNLADFNYPSIAVPKLNGTITFT---R 698
E++ + D N +F + + D A +G F
Sbjct: 446 GVEEFQVVVTDAKGNFGVPTVFVS----------MMRDNGSCYYAKTGPDGIARFPHIDS 495
Query: 699 KVKNVGAANSTYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGF 757
++ + R +I + E + V F V D + F
Sbjct: 496 GTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNF 554
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 48.5 bits (114), Expect = 2e-06
Identities = 39/323 (12%), Positives = 70/323 (21%), Gaps = 79/323 (24%)
Query: 63 LGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVFPDEGAKLHTTRSW--- 119
+ E +NG V + + G+ V P +L
Sbjct: 51 VNGKVVLELPQIKVVSIKLNGM-TVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPN 109
Query: 120 -DFLGLEKDNFIP---------------------PDSAWKKARFGEDVIIANVDSGVWPE 157
D + K W++A G ++I+A VD+GV
Sbjct: 110 PDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEAS-GTNIIVAVVDTGVDGT 168
Query: 158 SKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN 217
+ +
Sbjct: 169 HPDLEGQVIAGYRPAFDEELPAGTD----------------------------------- 193
Query: 218 LTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKP---NEN 274
GTH T G +P A++ + P N
Sbjct: 194 ---SSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGN 241
Query: 275 DSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNS 334
+ + A G V++ S G + + + + V+A N+
Sbjct: 242 GYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVV--MVVSAGNNT 299
Query: 335 GPDDGSVENVAPWILTVGASTTD 357
P ++ V A
Sbjct: 300 SDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.9 bits (162), Expect = 1e-12
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 532 PGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIK 591
G+DI+A P T Y ++GTSM+ PHVAG LVK +P WS I+
Sbjct: 188 AGLDIVAPGVNVQSTYPGST------YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 592 SAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSAL 633
+ + TA + S+N YG+G VN +A
Sbjct: 242 NHLKNTATSLGSTNL---------------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
Query: 258 PKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNTIAIGS 317
P A + A KV + S + + I + A ++G+ V + SLG T+
Sbjct: 84 PSAELYAVKVL---GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAV 137
Query: 318 FHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASV 377
A G++ VAA+GNSG S + VGA+ + S+ G + I A
Sbjct: 138 NSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDI-VAPG 196
Query: 378 SQKGLLNDLDSYPLIGGADARIANVSEIDA-SECKKGSIDPAKVQGKIL 425
+Y + G +V+ A + K S +++ +
Sbjct: 197 VNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLK 245
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 66.9 bits (162), Expect = 1e-12
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 36/157 (22%)
Query: 477 GESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDI 536
G S + +T A + + A F+S G + +V APG +
Sbjct: 153 GNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGV 204
Query: 537 IAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMT 596
+ + + Y ++GTSM+ PHVAG L+ + HP+ S + +++ + +
Sbjct: 205 YSTYPTNT-------------YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSS 251
Query: 597 TARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSAL 633
TA SS YG G +N +A
Sbjct: 252 TATYLGSSFY---------------YGKGLINVEAAA 273
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 66.1 bits (159), Expect = 3e-12
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 471 HLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVT 530
+ Y+ G Y A++ N + R + + +++
Sbjct: 169 NSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEIS 228
Query: 531 APGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAI 590
APG + + Y +SGTSM+ PHV+G+ + +P S +
Sbjct: 229 APGSSVY-------------STWYNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQL 275
Query: 591 KSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVN 628
+S + A++ D +A G G
Sbjct: 276 RSNLQERAKSVDIKGG-----YGAAIGDDYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 64.9 bits (157), Expect = 5e-12
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 36/164 (21%)
Query: 471 HLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVT 530
+ G + +ST + S A F+S GP + DV
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPEL--------DVM 199
Query: 531 APGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAI 590
APGV I + Y +GTSM+ PHVAG L+ + HP+W+ +
Sbjct: 200 APGVSIQSTLPGNK-------------YGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 591 KSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
+S++ T S YG G +N +A
Sbjct: 247 RSSLENTTTKLGDSFY---------------YGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 48.0 bits (113), Expect = 2e-06
Identities = 54/278 (19%), Positives = 95/278 (34%), Gaps = 64/278 (23%)
Query: 130 IPPDSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNK 189
I + + G +V +A +DSG+
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSH------------------------------- 39
Query: 190 KLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSG 249
+L+ +++P +D HGTH V +
Sbjct: 40 -------------PDLKVAGGASMVPSETNPFQDNNSHGTH---------VAGTVAALNN 77
Query: 250 YGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHL 309
G +P A + A KV + S + I++ + AI + +DVI+ SLG
Sbjct: 78 SIGVLGVAPSASLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSG 131
Query: 310 KNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE----NVAPWILTVGASTTDREFTSYVT 365
+ A+ +G+V VAAAGN G S P ++ VGA + + S+ +
Sbjct: 132 SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSS 191
Query: 366 LGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVS 403
+G ++ + VS + L + Y G +V+
Sbjct: 192 VGPELDVMAPGVSIQSTLPG-NKYGAYNGTSMASPHVA 228
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.2 bits (157), Expect = 7e-12
Identities = 22/217 (10%), Positives = 56/217 (25%), Gaps = 10/217 (4%)
Query: 423 KILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYA 482
++L + + + S G + P V
Sbjct: 117 RMLDGEVTDAVEARSLGLNPNHIH----IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 172
Query: 483 YINS-----TQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDII 537
+ + + + + + + +
Sbjct: 173 GRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATT 232
Query: 538 AAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTT 597
+ + T R+ +GTS S P AGI+ L + + + ++ ++ T
Sbjct: 233 YSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQT 292
Query: 598 ARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
++ + G K + YG G ++ + +
Sbjct: 293 SKPAHLNADDWATNGVGRKVSHS-YGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 23/233 (9%), Positives = 66/233 (28%), Gaps = 3/233 (1%)
Query: 405 IDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMV 464
+ I + + + A+ + + + S G
Sbjct: 101 AAKKGNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRH 160
Query: 465 HHLPTAHLNYTDGESVYAYINS---TQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMID 521
P+ + + V +S + ++ + + ++ +
Sbjct: 161 LQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH 220
Query: 522 PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL 581
+ P + ++ SG + GTS + P AG+ L+
Sbjct: 221 KDLHPPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEA 280
Query: 582 HPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
+P+ + ++ + +A + + + K YG G ++ + ++
Sbjct: 281 NPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIE 333
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 18/178 (10%)
Query: 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMID 521
+M + G + N + F + +
Sbjct: 153 DMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSSRGPTK 212
Query: 522 PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL 581
KPDV APG I++A + + S + Y M GTSM+ P VAG V ++
Sbjct: 213 DGRIKPDVMAPGTFILSARSSLAPDSSFWAN-HDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 582 HPD-----WSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
P+ +K+A++ A + G G G V + +L+
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAA------------DIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.0 bits (123), Expect = 8e-08
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 552 HKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRP 607
+SGTSM+ PHVAG+ + TL + +A + I TA D SN P
Sbjct: 211 TWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 49.2 bits (116), Expect = 8e-07
Identities = 44/236 (18%), Positives = 60/236 (25%), Gaps = 57/236 (24%)
Query: 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLI 192
D AW + IA +D+GV + D
Sbjct: 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNN--------- 71
Query: 193 GIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGT 252
HGTH A + G
Sbjct: 72 ----------------------------------HGTHVAGIAAAETNNATGIAGMAPN- 96
Query: 253 AKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHDGVDVISASLGSIAREHLKNT 312
R+ A + + N S +DI A A G +VI+ SLG
Sbjct: 97 -------TRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN 146
Query: 313 IAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGN 368
+A G V VAAAGN+G ++ VGA S+ G
Sbjct: 147 A---VNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGT 199
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 29/208 (13%)
Query: 428 YGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINST 487
R D G A +I + SG +V+N+ + A +
Sbjct: 100 LAVRALDRNGSGTLSDIADAIIYAAD--SGAEVINLSLGCDCHTTTLEN-----AVNYAW 152
Query: 488 QNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMID-PAIFKPDVTAPGVDIIAAFTEASGP 546
+ + + ++ ++ N+I A+ + D A + +
Sbjct: 153 NKGSVVVAAAGNNGSSTTFEPASY-----ENVIAVGAVDQYDRLASFSNYGTWVDVVAPG 207
Query: 547 SPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNR 606
+ Y MSGTSM+ PHVAG+ L+ + I+ AI TA +
Sbjct: 208 VDIVSTITGNRYAYMSGTSMASPHVAGLAALL--ASQGRNNIEIRQAIEQTADKISGTGT 265
Query: 607 PILDQNTGEKATPFAYGAGHVNPNSALD 634
+ G +N +A+
Sbjct: 266 Y--------------FKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 22/173 (12%)
Query: 462 NMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMID 521
++ + + + Y + + + + + + +
Sbjct: 128 KVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN 187
Query: 522 PAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTL 581
VD+ A + P T+ +SGTSM+ PHVAG+ GL+
Sbjct: 188 DNKSSFSTYGSWVDVAAPGSSIYSTYPTSTYA------SLSGTSMATPHVAGVAGLL--A 239
Query: 582 HPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALD 634
S + I++AI TA + + G VN A+
Sbjct: 240 SQGRSASNIRAAIENTADKISGTGT--------------YWAKGRVNAYKAVQ 278
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.0 bits (92), Expect = 9e-04
Identities = 25/193 (12%), Positives = 55/193 (28%), Gaps = 9/193 (4%)
Query: 441 AQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTN---- 496
A A A G S P + + + T T+
Sbjct: 154 ATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAY 213
Query: 497 -SKTEFNTRPSRMMAFFTSRGPNMID---PAIFKPDVTAPGVDIIAAFTEASGPSPDETH 552
++T +N + + G + P+ PG ++ + +
Sbjct: 214 SNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALI 273
Query: 553 KRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612
+ GTS++ P G+ +++ + + S ++ + + S + N
Sbjct: 274 YNYGQLQQIGGTSLASPIFVGLWARLQSANSN-SLGFPAASFYSAISSTPSLVHDVKSGN 332
Query: 613 TGEKATPFAYGAG 625
G + G G
Sbjct: 333 NGYGGYGYNAGTG 345
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.73 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.56 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 95.23 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.05 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 91.74 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=4e-52 Score=485.54 Aligned_cols=372 Identities=21% Similarity=0.198 Sum_probs=263.7
Q ss_pred CCCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHH----HHH--hhCC
Q 040503 26 AKKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEH----AKQ--LENH 99 (767)
Q Consensus 26 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~----~~~--l~~~ 99 (767)
.+.+|||.||+... ..++++++ ..++++.+. .++.+.++++... .+. +..+
T Consensus 30 ~~~~~iV~~k~~~~---------------~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (671)
T d1r6va_ 30 TEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALAL 86 (671)
T ss_dssp CTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCC
T ss_pred CCCeEEEEECCccC---------------HHHHHHhc-------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcC
Confidence 46789999997332 22233332 234555555 5566666665332 222 3458
Q ss_pred CCeEEEEeCcccccCcc----CCC-----------------------cccCCccCCCCCCccccccCCCCCceEEEEecc
Q 040503 100 PGVVSVFPDEGAKLHTT----RSW-----------------------DFLGLEKDNFIPPDSAWKKARFGEDVIIANVDS 152 (767)
Q Consensus 100 ~~V~~v~~~~~~~~~~~----~s~-----------------------~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDt 152 (767)
|+|++|+|+...++... ... ..|++..+. . .++|....+|+||+||||||
T Consensus 87 ~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~--~-~~a~~~~~tG~gV~VaViDt 163 (671)
T d1r6va_ 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG--V-TQQLWEEASGTNIIVAVVDT 163 (671)
T ss_dssp SSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT--C-CHHHHHHCSCTTCEEEEEES
T ss_pred CCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcC--c-cHHHHhcCCCCCCEEEEEcC
Confidence 99999999876554311 000 012222221 1 23333456999999999999
Q ss_pred cCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCCCCCCCCCCCCchhhh
Q 040503 153 GVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQNLTTGRDEEGHGTHTL 232 (767)
Q Consensus 153 Gid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVA 232 (767)
|||++||+|.++ ++..+.+..+.+ .....++.|..|||||||
T Consensus 164 Gvd~~Hpdl~~~--------------------------~~~~~~~~~~~~------------~~~~~~~~d~~gHGT~VA 205 (671)
T d1r6va_ 164 GVDGTHPDLEGQ--------------------------VIAGYRPAFDEE------------LPAGTDSSYGGSAGTHVA 205 (671)
T ss_dssp CCBTTSGGGTTT--------------------------BCCEEEGGGTEE------------ECTTCBCCTTCSHHHHHH
T ss_pred CcCCCChhhcCC--------------------------cccCccccccCC------------CCCCCcCcccCCCCcccc
Confidence 999999999764 222223221110 001234567889999999
Q ss_pred hhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCC---CCCCCChhHHHHHHHHhhhcCCcEEEeccCCCCccCc
Q 040503 233 ATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPN---ENDSCASADILSAYDLAIHDGVDVISASLGSIAREHL 309 (767)
Q Consensus 233 gi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---~~~~~~~~~i~~aid~a~~~gvdVIn~SlG~~~~~~~ 309 (767)
|||+|+.+ +..+.||||+|+|+++|++++.. .......+.+++||+||+++|++|||||||+.. .
T Consensus 206 Giiaa~~~---------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~ 273 (671)
T d1r6va_ 206 GTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---Y 273 (671)
T ss_dssp HHHHCCCS---------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---C
T ss_pred ceeeeecc---------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---C
Confidence 99999752 12348999999999999986421 011466788999999999999999999999763 3
Q ss_pred ccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcccCCCceEEeccccCcceeeeeEEecCceeEeeeeeeccccCCCCCc
Q 040503 310 KNTIAIGSFHAMMNGIVSVAAAGNSGPDD-GSVENVAPWILTVGASTTDREFTSYVTLGNKMVIKGASVSQKGLLNDLDS 388 (767)
Q Consensus 310 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 388 (767)
...+..++..+.++|+++|+||||++.+. ...++..|++|+|||++...
T Consensus 274 ~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------ 323 (671)
T d1r6va_ 274 SYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------ 323 (671)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------------
T ss_pred ChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------------
Confidence 45677788889999999999999998754 34456789999999965321
Q ss_pred eeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEeccCCCCccccccccccc
Q 040503 389 YPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLP 468 (767)
Q Consensus 389 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p 468 (767)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeCCCcEEEeecCCCCCCC
Q 040503 469 TAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAPGVDIIAAFTEASGPSP 548 (767)
Q Consensus 469 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 548 (767)
....++.||+|||.. ||+|||++|+++++.......
T Consensus 324 ------------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~ 359 (671)
T d1r6va_ 324 ------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGY 359 (671)
T ss_dssp ------------------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTC
T ss_pred ------------------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCcccc
Confidence 013578999999987 999999999999875432211
Q ss_pred C-----CCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccC
Q 040503 549 D-----ETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYG 623 (767)
Q Consensus 549 ~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 623 (767)
. ......+.|..++|||||||||||++|||+|++|+|+++|||++|++||++++.. ..+..||
T Consensus 360 ~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~------------g~~~~~G 427 (671)
T d1r6va_ 360 EGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------------GWDHDTG 427 (671)
T ss_dssp CCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS------------SCBTTTB
T ss_pred ccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC------------CCCCCcc
Confidence 1 1112346899999999999999999999999999999999999999999876432 2356899
Q ss_pred CCccCccCcCCCCccc
Q 040503 624 AGHVNPNSALDPGLVY 639 (767)
Q Consensus 624 ~G~vd~~~A~~~glv~ 639 (767)
||+||+.+|++..+..
T Consensus 428 ~G~vna~~Av~~~~~~ 443 (671)
T d1r6va_ 428 YGLVKLDAALQGPLPT 443 (671)
T ss_dssp TCBCCHHHHHHCCCCS
T ss_pred cChhCHHHHhhCcCCC
Confidence 9999999999865533
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=5.1e-49 Score=439.62 Aligned_cols=377 Identities=21% Similarity=0.250 Sum_probs=242.5
Q ss_pred cccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCC
Q 040503 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAV 213 (767)
Q Consensus 134 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (767)
.+|. .+|+||+|||||||||++||+|+++ ++..+++..
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~--------------------------~~~~~~~~~-------------- 52 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSG-------------- 52 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTT--------------
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC--------------------------eeeeeccCC--------------
Confidence 4554 4899999999999999999999764 222222211
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCC--CCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSP--KARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
..+...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++.... .+...++++||+++++
T Consensus 53 -~~~~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~---~~~~~~~~~a~~~a~~ 119 (435)
T d1v6ca_ 53 -TGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAG---WGYSSSLVAAIDTCVN 119 (435)
T ss_dssp -SCCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTE---ECCSSCHHHHHHHHHH
T ss_pred -CCCCCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccc---cchhhhhhhHHHHHhh
Confidence 111345778999999999999998522 22489999 89999999998765 4677889999999986
Q ss_pred -cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCce
Q 040503 292 -DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKM 370 (767)
Q Consensus 292 -~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~ 370 (767)
.+++|||+|||... ....+..++..+.++|++||+||||+|+...+.++..+++|+|||++.+.....+..++...
T Consensus 120 ~~~~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~v 196 (435)
T d1v6ca_ 120 SGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQV 196 (435)
T ss_dssp TTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSE
T ss_pred cccceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCce
Confidence 59999999999873 34456677788899999999999999988888888899999999988776443322222221
Q ss_pred eEe--eeeeeccccCCCCCcee------------------eEecccc-cccc-c---cccccCccc--CCCCCCCCccce
Q 040503 371 VIK--GASVSQKGLLNDLDSYP------------------LIGGADA-RIAN-V---SEIDASECK--KGSIDPAKVQGK 423 (767)
Q Consensus 371 ~~~--g~~~~~~~~~~~~~~~~------------------lv~~~~~-~~~~-~---~~~~~~~c~--~~~~~~~~~~gk 423 (767)
.+. |..+..... .+..... .+..... .... . .......|. ...+...+..++
T Consensus 197 dv~apG~~i~st~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (435)
T d1v6ca_ 197 EISGPGEAILSTVT-VGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANK 275 (435)
T ss_dssp EEEEECSSEEEECS-TTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTE
T ss_pred EEeecccceeeeee-cCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccc
Confidence 111 111100000 0000000 0000000 0000 0 000000011 111223345566
Q ss_pred EEEEecCC------chhHHHHHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecC
Q 040503 424 ILICYGAR------YGDEKGQWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNS 497 (767)
Q Consensus 424 ivl~~~g~------~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 497 (767)
+.++.+.. ............+..+++.+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 311 (435)
T d1v6ca_ 276 ICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN-------------------------------------------- 311 (435)
T ss_dssp EEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC--------------------------------------------
T ss_pred cceeeccCCccccceeeeeceeecccCCcceEEecc--------------------------------------------
Confidence 66666543 2344444555555555554432
Q ss_pred ceeeccCCCCceecccCCCCCCCC--CCcccceEEeCCCcEEEeecCCCCC----CCCCCCCCccceeeecccccchhhH
Q 040503 498 KTEFNTRPSRMMAFFTSRGPNMID--PAIFKPDVTAPGVDIIAAFTEASGP----SPDETHKRRIPYIMMSGTSMSCPHV 571 (767)
Q Consensus 498 ~~~~~~~~~~~~a~fSs~Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~~~----~~~~~~~~~~~y~~~sGTSmAaP~V 571 (767)
+.+|.... ....||||.+||..|.++....... ...........|..|||||||||||
T Consensus 312 ----------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 375 (435)
T d1v6ca_ 312 ----------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHV 375 (435)
T ss_dssp ----------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHH
T ss_pred ----------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHH
Confidence 23332211 2457899999998887553210000 0000011234799999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCCCccccCCcchhhhhhc
Q 040503 572 AGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDPGLVYDLTFEDYLGYIC 651 (767)
Q Consensus 572 AG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~glv~d~~~~~~~~~~~ 651 (767)
||++|||||+||+|+|+|||++||+||+++.. .++++.||+|+||+.+|+ +|+...|
T Consensus 376 AG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~------------~~~~~~~G~G~vn~~~A~-----------~~l~~~~ 432 (435)
T d1v6ca_ 376 SGVATLVWSYHPECSASQVRAALNATADDLSV------------AGRDNQTGYGMINAVAAK-----------AYLDESC 432 (435)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS------------SSCBTTTBTCBCCHHHHH-----------HHHHHCT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC------------CCCCCCcccceecHHHHH-----------HHHHhcC
Confidence 99999999999999999999999999987632 345689999999999996 4666666
Q ss_pred c
Q 040503 652 D 652 (767)
Q Consensus 652 ~ 652 (767)
.
T Consensus 433 ~ 433 (435)
T d1v6ca_ 433 T 433 (435)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.9e-48 Score=407.22 Aligned_cols=259 Identities=30% Similarity=0.348 Sum_probs=210.9
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|+++.+|+||+|||||||||++||+|.++ ++..+.|...
T Consensus 21 ~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~~------------ 62 (280)
T d1dbia_ 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccCC------------
Confidence 58999999999999999999999999999753 3333443321
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+ .+...++++||+|++++
T Consensus 63 -----~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 126 (280)
T d1dbia_ 63 -----DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNG---SGTLSDIADAIIYAADS 126 (280)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHc
Confidence 235678899999999999987532 23458999999999999998776 47899999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 127 g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~---------------- 187 (280)
T d1dbia_ 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ---------------- 187 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------------
T ss_pred CCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC----------------
Confidence 9999999999873 334455667788899999999999999776666777899999998543
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
.+.++.||++||.. |++||
T Consensus 188 -----------------------------------------------------~~~~a~~S~~g~~~--------d~~ap 206 (280)
T d1dbia_ 188 -----------------------------------------------------YDRLASFSNYGTWV--------DVVAP 206 (280)
T ss_dssp -----------------------------------------------------TSCBCTTBCCSTTC--------CEEEE
T ss_pred -----------------------------------------------------CCCcCCcCCCCCcc--------cccCC
Confidence 24678999999977 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|.+|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 207 g~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~--------- 262 (280)
T d1dbia_ 207 GVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG--------- 262 (280)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT---------
T ss_pred ccceeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC---------
Confidence 99999998763 8999999999999999999999995 56899999999999987531
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
+...||||+||+.+||+
T Consensus 263 -----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcCCCCeEcHHHHcC
Confidence 24579999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=5.5e-48 Score=404.37 Aligned_cols=257 Identities=29% Similarity=0.425 Sum_probs=213.0
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+++|+||+|||||||||++||+|+. .+.++|..+
T Consensus 14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~----------------------------~~~~~~~~~------------ 53 (274)
T d1r0re_ 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVAG------------ 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECSTT------------
T ss_pred HHHHHcCCCCCCeEEEEECCCCCCCChhhcc----------------------------cCCccccCC------------
Confidence 5789999999999999999999999999952 233344332
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..||||||||||++.... ..+.|+||+|+|+.+|+++..+ .+..++++++++++.++
T Consensus 54 -----~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~ 116 (274)
T d1r0re_ 54 -----EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSG---SGSYSGIVSGIEWATTN 116 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred -----CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 224557889999999999987522 2247999999999999998776 46789999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC----CcccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDG----SVENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|+|+|||... ..........++.++++++|+||||+|.... ..+...+++|+|||++.
T Consensus 117 ~~~i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~------------ 181 (274)
T d1r0re_ 117 GMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS------------ 181 (274)
T ss_dssp TCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT------------
T ss_pred CCceecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC------------
Confidence 9999999999873 2334455567788999999999999986532 22345688999998543
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
.+.++.||++||.+ |
T Consensus 182 ---------------------------------------------------------~~~~~~~s~~g~~~--------d 196 (274)
T d1r0re_ 182 ---------------------------------------------------------NSNRASFSSVGAEL--------E 196 (274)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTTE--------E
T ss_pred ---------------------------------------------------------CCCcccccCCCCCE--------E
Confidence 24678999999855 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
|+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 197 i~APG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------ 257 (274)
T d1r0re_ 197 VMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------ 257 (274)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------
T ss_pred EEecCCCcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------
Confidence 999999999998763 7899999999999999999999999999999999999999998652
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
+...||+|+||+.+|++
T Consensus 258 ---------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCceEcCeecHHHhcC
Confidence 24679999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.8e-47 Score=401.52 Aligned_cols=258 Identities=30% Similarity=0.388 Sum_probs=218.9
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~--------------------------~~~~~~~~~~------------ 61 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN------------ 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT------------
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC--------------------------eecccccccc------------
Confidence 5799987 999999999999999999999753 4444554432
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..+|||||||+|++...++ ..+.|+||+|+|+.+|++...+ .+...+++++|+++++.
T Consensus 62 -----~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 125 (279)
T d1thma_ 62 -----DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSG---SGTWTAVANGITYAADQ 125 (279)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHT
T ss_pred -----CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCC---CCcHHHHHHHHHHHhhc
Confidence 3356788999999999999985432 3358999999999999998776 47889999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
+++|+|+|||... .......+...+.++|+++|+|+||+|..........|++|+|||++.+
T Consensus 126 ~~~i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~--------------- 187 (279)
T d1thma_ 126 GAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------- 187 (279)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCceeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC---------------
Confidence 9999999999873 3445566777888999999999999998877777788999999986532
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+.++.||++|++. ||+||
T Consensus 188 ------------------------------------------------------~~~~~~S~~G~~~--------di~Ap 205 (279)
T d1thma_ 188 ------------------------------------------------------DNKSSFSTYGSWV--------DVAAP 205 (279)
T ss_dssp ------------------------------------------------------SCBCTTCCCCTTC--------CEEEE
T ss_pred ------------------------------------------------------CCCccccCCCceE--------EEeee
Confidence 4678999999987 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|.+|+++.+.. .|..++|||||||||||++|||+|.+| ++.+||++|++||+++.
T Consensus 206 g~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~---------- 260 (279)
T d1thma_ 206 GSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS---------- 260 (279)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT----------
T ss_pred eeccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC----------
Confidence 99999998874 799999999999999999999999765 89999999999998753
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
.....||||+||+.+||+
T Consensus 261 ----g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 ----GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ----TBTTTBSSEECCHHHHHH
T ss_pred ----CCCCcceeeeEcHHHhhC
Confidence 134579999999999975
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2.1e-47 Score=398.73 Aligned_cols=256 Identities=30% Similarity=0.413 Sum_probs=216.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|+.+++|+||+|+||||||+ +||+|... ..+.|..+
T Consensus 14 ~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----------------------------~~~~~~~~------------ 52 (269)
T d1gcia_ 14 PAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----------------------------GGASFVPG------------ 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----------------------------EEEECSTT------------
T ss_pred HHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----------------------------ccccccCC------------
Confidence 58999999999999999999998 89999532 22333322
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
...+.|..+|||||||||++... .....|+||+|+|+.+|++...+ .+....+.++++++..+
T Consensus 53 -----~~~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~ 115 (269)
T d1gcia_ 53 -----EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASG---SGSVSSIAQGLEWAGNN 115 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTS---CBCHHHHHHHHHHHHHT
T ss_pred -----CCCccccchhhheecccccccCC---------CccccccCCceEEEEEEEecCCC---CccHHHHHHHHHHHHhc
Confidence 23456788999999999998752 23347999999999999998776 47788999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcccCCCceEEeccccCcceeeeeEEecCceeE
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVENVAPWILTVGASTTDREFTSYVTLGNKMVI 372 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (767)
++++||+|||... .......+...+.++|++||+||||+|......++..|++|+||+++.+
T Consensus 116 ~~~~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 177 (269)
T d1gcia_ 116 GMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------- 177 (269)
T ss_dssp TCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred ccccccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC---------------
Confidence 9999999999863 2334555667889999999999999998777777788999999985432
Q ss_pred eeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEEEec
Q 040503 373 KGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMILVS 452 (767)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i~~~ 452 (767)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceEEeC
Q 040503 453 SKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDVTAP 532 (767)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 532 (767)
+.++.||++||.. ||+||
T Consensus 178 ------------------------------------------------------~~~~~~S~~G~~~--------di~Ap 195 (269)
T d1gcia_ 178 ------------------------------------------------------NNRASFSQYGAGL--------DIVAP 195 (269)
T ss_dssp ------------------------------------------------------SCBCTTCCCSTTE--------EEEEE
T ss_pred ------------------------------------------------------CCcccccCCCCCc--------eEEEe
Confidence 4678899999976 99999
Q ss_pred CCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcccCCC
Q 040503 533 GVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPILDQN 612 (767)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (767)
|.++.++.+.. .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 196 g~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g---------- 252 (269)
T d1gcia_ 196 GVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------- 252 (269)
T ss_dssp CSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------
T ss_pred eecceeccCCC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------
Confidence 99999998763 8999999999999999999999999999999999999999998752
Q ss_pred CCCCCCCCccCCCccCccCcCC
Q 040503 613 TGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 613 ~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
++..||||+||+++|++
T Consensus 253 -----~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCeEcHHHhcC
Confidence 23579999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.3e-47 Score=401.07 Aligned_cols=259 Identities=31% Similarity=0.421 Sum_probs=214.3
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|+++++|+||+|||||||||++||+|+.. ..+++...
T Consensus 14 ~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----------------------------~~~~~~~~------------ 53 (281)
T d1to2e_ 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----------------------------GGASMVPS------------ 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----------------------------EEEECCTT------------
T ss_pred HHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----------------------------CCccccCC------------
Confidence 58999999999999999999999999999632 12222211
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
+.....+..+|||||||||+|... .....||||+|+|+.+|++...+ .+..++++++|+|++..
T Consensus 54 ----~~~~~~~~~~HGT~vAgiiag~~~---------~~~~~giAp~a~l~~~kv~~~~~---~~~~~~~~~ai~~a~~~ 117 (281)
T d1to2e_ 54 ----ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLGADG---SGQYSWIINGIEWAIAN 117 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSCTTS---EECHHHHHHHHHHHHHT
T ss_pred ----CCCCCcCcCCCCceeecccccCCC---------CCCcceeecccEEEEEEEeCCCC---CcCHHHHHHHHHHHHhc
Confidence 011223467999999999998752 12347999999999999998766 46788999999999999
Q ss_pred CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC----cccCCCceEEeccccCcceeeeeEEecC
Q 040503 293 GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS----VENVAPWILTVGASTTDREFTSYVTLGN 368 (767)
Q Consensus 293 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~~~~~~~~ 368 (767)
+++|||+|||... ....+..+++.+.++|+++|+||||+|..... .++..+++|+|||++.
T Consensus 118 ~~~v~n~S~g~~~---~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~------------ 182 (281)
T d1to2e_ 118 NMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS------------ 182 (281)
T ss_dssp TCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT------------
T ss_pred cccccccccCCCc---chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC------------
Confidence 9999999999762 44567777888999999999999999865332 3355789999998643
Q ss_pred ceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEE
Q 040503 369 KMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGM 448 (767)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~ 448 (767)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccce
Q 040503 449 ILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPD 528 (767)
Q Consensus 449 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 528 (767)
.+.++.||++||.. |
T Consensus 183 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 197 (281)
T d1to2e_ 183 ---------------------------------------------------------SNQRASFSSVGPEL--------D 197 (281)
T ss_dssp ---------------------------------------------------------TSCBCTTCCCSTTC--------C
T ss_pred ---------------------------------------------------------CCCCCcccCCCCCc--------c
Confidence 24678899999987 9
Q ss_pred EEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCCCcc
Q 040503 529 VTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSNRPI 608 (767)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~ 608 (767)
++|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 198 ~~apG~~i~s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------ 258 (281)
T d1to2e_ 198 VMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------ 258 (281)
T ss_dssp EEEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------
T ss_pred ccCCCCCceeecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------
Confidence 999999999998763 7899999999999999999999999999999999999999998752
Q ss_pred cCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 609 LDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 609 ~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
+...||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccCcccHHHHHhh
Confidence 235799999999999983
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.5e-43 Score=374.21 Aligned_cols=287 Identities=25% Similarity=0.327 Sum_probs=217.7
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
+.+|..+++|+||+|+|||||||++||+|.++ +...++|.....
T Consensus 16 ~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~--------------------------~~~~~~~~~~~~---------- 59 (309)
T d2ixta1 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATT---------- 59 (309)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSS----------
T ss_pred hhhhccCCCCCCeEEEEEccCCCCCChhHhcc--------------------------ccccccccCCCC----------
Confidence 57999999999999999999999999999753 444445543211
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
.......|..||||||||||+|.... ....+.||||+|+|+.+|++...+ .+..++++.+++++++.
T Consensus 60 ---~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~~~~~a~~~ 126 (309)
T d2ixta1 60 ---PINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSG---SGYSDDIAAAIRHAADQ 126 (309)
T ss_dssp ---CEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTS---CCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCC---Ccccccccccccccccc
Confidence 11235567889999999999987532 223348999999999999988776 47888999999998875
Q ss_pred C-----CcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcc--cCCCceEEeccccCcceeeeeEE
Q 040503 293 G-----VDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVE--NVAPWILTVGASTTDREFTSYVT 365 (767)
Q Consensus 293 g-----vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~~~~ 365 (767)
+ ..|+|+|++... .......++..+.++|+++|+||||++....... +..+++++|++.+........
T Consensus 127 ~~~~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-- 201 (309)
T d2ixta1 127 ATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-- 201 (309)
T ss_dssp HHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE--
T ss_pred cccccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc--
Confidence 4 578999999763 3345556667888999999999999987655544 345788888875432210000
Q ss_pred ecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCc
Q 040503 366 LGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGA 445 (767)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~ 445 (767)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcc
Q 040503 446 VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIF 525 (767)
Q Consensus 446 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 525 (767)
..........++++|+.. ....
T Consensus 202 --------------------------------------------------------~~~~~~~~~~~~~~~~~~--~~~~ 223 (309)
T d2ixta1 202 --------------------------------------------------------RVADYSSRGYISTAGDYV--IQEG 223 (309)
T ss_dssp --------------------------------------------------------EECTTSCCCCTTTTTSSS--CCTT
T ss_pred --------------------------------------------------------cccccccccccccccccc--cCCC
Confidence 000012344567777765 6678
Q ss_pred cceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCC
Q 040503 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSN 605 (767)
Q Consensus 526 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g 605 (767)
||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+
T Consensus 224 ~vdi~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~ 290 (309)
T d2ixta1 224 DIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290 (309)
T ss_dssp CCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCB
T ss_pred cceeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC
Confidence 999999999999998763 7999999999999999999999999999999999999999999876443
Q ss_pred CcccCCCCCCCCCCCccCCCccCc
Q 040503 606 RPILDQNTGEKATPFAYGAGHVNP 629 (767)
Q Consensus 606 ~~~~~~~~~~~~~~~~~G~G~vd~ 629 (767)
. ......+++.+|+|++|+
T Consensus 291 ~-----~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 291 G-----YGAAIGDDYASGFGFARV 309 (309)
T ss_dssp S-----TTCCSSSBTTTBTCBCCC
T ss_pred C-----cCCccCCCcccCCCEecC
Confidence 2 223345677889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=9.1e-43 Score=365.35 Aligned_cols=242 Identities=26% Similarity=0.347 Sum_probs=195.4
Q ss_pred cccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCC
Q 040503 134 SAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAV 213 (767)
Q Consensus 134 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 213 (767)
..|....+|+||+|+|||||||++||+|.++ +...+.+
T Consensus 22 ~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~--------------------------~~~~~~~---------------- 59 (279)
T d2pwaa1 22 TYYYDESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTY---------------- 59 (279)
T ss_dssp CEECCTTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEES----------------
T ss_pred cceecCCCCCCeEEEEECcCCCCCChhhcCC--------------------------ceeccCC----------------
Confidence 3333566999999999999999999999754 1111111
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc-
Q 040503 214 IPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD- 292 (767)
Q Consensus 214 ~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~- 292 (767)
...+.|.+||||||||||+|.. .|+||+|+|+.+|++.... ....+.+..+++++...
T Consensus 60 ----~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~---~~~~~~~~~~~~~~~~~~ 118 (279)
T d2pwaa1 60 ----YYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNG---SGQYSTIIAGMDFVASDK 118 (279)
T ss_dssp ----SSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTS---CCCHHHHHHHHHHHHHHG
T ss_pred ----CCCcccccCccccccccccccc--------------cccCCCccccceeeecCCc---ccccccccchhheecccc
Confidence 1234578899999999999874 6899999999999988766 47788899999998764
Q ss_pred ------CCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cccCCCceEEeccccCcceeeeeEE
Q 040503 293 ------GVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS-VENVAPWILTVGASTTDREFTSYVT 365 (767)
Q Consensus 293 ------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~ 365 (767)
+++|+|+|||.. ..+.+..++.++.++|+++|+||||++.+... .+...|++|+|||++.
T Consensus 119 ~~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~--------- 185 (279)
T d2pwaa1 119 NNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------- 185 (279)
T ss_dssp GGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------
T ss_pred cccccccccceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee---------
Confidence 356999999975 34566777788899999999999999866433 3356789999998543
Q ss_pred ecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCc
Q 040503 366 LGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGA 445 (767)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~ 445 (767)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcc
Q 040503 446 VGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIF 525 (767)
Q Consensus 446 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 525 (767)
.+.++.||++||..
T Consensus 186 ------------------------------------------------------------~g~~~~~S~~G~~~------ 199 (279)
T d2pwaa1 186 ------------------------------------------------------------YDRRSSFSNYGSVL------ 199 (279)
T ss_dssp ------------------------------------------------------------TSBBCTTCCBSTTC------
T ss_pred ------------------------------------------------------------cCCCccccCCCCcc------
Confidence 25678999999987
Q ss_pred cceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccccccCCC
Q 040503 526 KPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTARAEDSSN 605 (767)
Q Consensus 526 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g 605 (767)
||+|||.+|+++++.. .|..++|||||||+|||++|||+|++|.++++++|. |++||++.
T Consensus 200 --dv~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---- 259 (279)
T d2pwaa1 200 --DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---- 259 (279)
T ss_dssp --CEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES----
T ss_pred --ccccccccccccccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC----
Confidence 9999999999998763 799999999999999999999999999999887775 67788753
Q ss_pred CcccCCCCCCCCCCCccCCCccCc
Q 040503 606 RPILDQNTGEKATPFAYGAGHVNP 629 (767)
Q Consensus 606 ~~~~~~~~~~~~~~~~~G~G~vd~ 629 (767)
....+|+|++|.
T Consensus 260 ------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 260 ------------DLSNIPFGTVNL 271 (279)
T ss_dssp ------------CCBSCCTTSCCE
T ss_pred ------------CCCCCCCCChhh
Confidence 134589999885
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=3.5e-40 Score=352.27 Aligned_cols=299 Identities=24% Similarity=0.300 Sum_probs=219.4
Q ss_pred cccccc-CCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCC
Q 040503 133 DSAWKK-ARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~-~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 211 (767)
+.+|.. |++|+||+|||||||||++||+|.... ..+.++...+.+..
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------------------~~~~~~~~~~~~~~------------ 58 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE--------------------AFRGKITALYALGR------------ 58 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT--------------------TTTTCEEEEEETTT------------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc--------------------ccCCcEEeecCCCC------------
Confidence 367775 999999999999999999999997531 01122332222211
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
...+.|..||||||||||+|+... ..||||+|+|+.+|+++..+.. ......+..+++++..
T Consensus 59 ------~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 120 (318)
T d1wmda2 59 ------TNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQAYS 120 (318)
T ss_dssp ------TTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHHHHH
T ss_pred ------CCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccc-cccchhhHHHHHHHHh
Confidence 234567899999999999987421 2799999999999999875421 2455668889999999
Q ss_pred cCCcEEEeccCCCCccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCccc--CCCceEEeccccCcceeeeeEEecCc
Q 040503 292 DGVDVISASLGSIAREHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN--VAPWILTVGASTTDREFTSYVTLGNK 369 (767)
Q Consensus 292 ~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~~ 369 (767)
.+++|+|+|||.............+...+.++++++|+||||.|........ ..++++++.+.......
T Consensus 121 ~~~~i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~--------- 191 (318)
T d1wmda2 121 AGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS--------- 191 (318)
T ss_dssp TTCSEEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG---------
T ss_pred cCCceeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc---------
Confidence 9999999999987544455555666667789999999999999977665543 35667777664322100
Q ss_pred eeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHHHHHcCceEEE
Q 040503 370 MVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQWAAQAGAVGMI 449 (767)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~G~~g~i 449 (767)
+ +
T Consensus 192 -------------------~--------------------~--------------------------------------- 193 (318)
T d1wmda2 192 -------------------F--------------------G--------------------------------------- 193 (318)
T ss_dssp -------------------G--------------------C---------------------------------------
T ss_pred -------------------c--------------------c---------------------------------------
Confidence 0 0
Q ss_pred EeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCCCCCCcccceE
Q 040503 450 LVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNMIDPAIFKPDV 529 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 529 (767)
........+..+|++||.. ....|||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~ 220 (318)
T d1wmda2 194 ---------------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDV 220 (318)
T ss_dssp ---------------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCE
T ss_pred ---------------------------------------------------cccccccccccccccCCCc--CCCcccce
Confidence 0001124677889999987 77899999
Q ss_pred EeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhC-----CCCCHHHHHHHHHhccccccCC
Q 040503 530 TAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLH-----PDWSPAAIKSAIMTTARAEDSS 604 (767)
Q Consensus 530 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~~sp~~ik~~L~~TA~~~~~~ 604 (767)
.|||.+|+++.......... .......|..++|||||||||||++|||+|++ +.++|.+||++|++||++...
T Consensus 221 ~a~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~- 298 (318)
T d1wmda2 221 MAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL- 298 (318)
T ss_dssp EEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-
T ss_pred eecCceEEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-
Confidence 99999999988764321111 11123468889999999999999999999975 468899999999999987532
Q ss_pred CCcccCCCCCCCCCCCccCCCccCccCcCC
Q 040503 605 NRPILDQNTGEKATPFAYGAGHVNPNSALD 634 (767)
Q Consensus 605 g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 634 (767)
..+...||||+||+.+||+
T Consensus 299 -----------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 -----------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -----------CSSCTTTTTCBCCHHHHHT
T ss_pred -----------CCCCCCeeeceecHHHHhC
Confidence 2345789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.1e-39 Score=348.52 Aligned_cols=283 Identities=17% Similarity=0.219 Sum_probs=191.4
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcc-cchhhhhccCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYIN-QGTIEELRAKNPD 211 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~-~~~~~~~~~~~~~ 211 (767)
+.+|+.+.+|+||+|||||||||++||+|.++ +.....|. .+.+.
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~--------------------------~~~~~~~~~~~~~~-------- 72 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGN--------------------------YDPGASFDVNDQDP-------- 72 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG--------------------------BCGGGCEETTTTBS--------
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhc--------------------------cccCCCccccCCCC--------
Confidence 68999999999999999999999999999864 11001111 00000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhh
Q 040503 212 AVIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIH 291 (767)
Q Consensus 212 ~~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~ 291 (767)
.........|..||||||||||+|...++. ...|+||+++++.+|+... ...+.+.++.++++
T Consensus 73 --~~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~-------~~~~~~~~~~~~~~ 135 (334)
T d1p8ja2 73 --DPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG-------EVTDAVEARSLGLN 135 (334)
T ss_dssp --CCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS-------CCCHHHHHHHHTSC
T ss_pred --ccccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc-------cccchHHHHHHHhh
Confidence 111123455789999999999999864332 2378999999999998753 34456677777765
Q ss_pred -cCCcEEEeccCCCCc-cCc--------ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCccc----CCCceEEeccccCc
Q 040503 292 -DGVDVISASLGSIAR-EHL--------KNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN----VAPWILTVGASTTD 357 (767)
Q Consensus 292 -~gvdVIn~SlG~~~~-~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgA~~~~ 357 (767)
++++++|||||.... ... ......+...+..+|+++|+||||++........ ..+.+++|++.+.
T Consensus 136 ~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~- 214 (334)
T d1p8ja2 136 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ- 214 (334)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-
T ss_pred hcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc-
Confidence 679999999997621 111 1112233345567999999999998755433321 2344555555332
Q ss_pred ceeeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHH
Q 040503 358 REFTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKG 437 (767)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 437 (767)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCC
Q 040503 438 QWAAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGP 517 (767)
Q Consensus 438 ~~~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 517 (767)
.+..+.||++|+
T Consensus 215 --------------------------------------------------------------------~g~~~~~s~~~~ 226 (334)
T d1p8ja2 215 --------------------------------------------------------------------FGNVPWYSEACS 226 (334)
T ss_dssp --------------------------------------------------------------------TSCCCTTCCBCT
T ss_pred --------------------------------------------------------------------CCceeeecccCC
Confidence 234555666665
Q ss_pred CCCCCCcccceEEeCCCc-----EEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHH
Q 040503 518 NMIDPAIFKPDVTAPGVD-----IIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKS 592 (767)
Q Consensus 518 ~~~~~~~~KPDI~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 592 (767)
.. ..+..+||.. +.+... ...|..++|||||||||||++|||+|++|+|++.|||+
T Consensus 227 ~~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~ 287 (334)
T d1p8ja2 227 ST------LATTYSSGNQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQH 287 (334)
T ss_dssp TC------CEEEECCCSTTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred cc------ccccccccccccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHH
Confidence 43 1133444432 222221 13788999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCcccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 593 AIMTTARAEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 593 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
+|++||++....+..+.. ..........||||+||+.+||+.
T Consensus 288 ~L~~TA~~~~~~~~~~~~-~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 288 LVVQTSKPAHLNADDWAT-NGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp HHHHHCBCTTCCCSCCEE-CTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHhCcccCCCCccccc-cCCCcccCCCCcceEeCHHHHHHH
Confidence 999999987554433322 222333456789999999999874
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-39 Score=346.79 Aligned_cols=286 Identities=16% Similarity=0.174 Sum_probs=202.4
Q ss_pred ccccccCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCC
Q 040503 133 DSAWKKARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDA 212 (767)
Q Consensus 133 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 212 (767)
..+|+.+++|+||+|||||||||++||+|.++- + ..+.+.|.+..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~-------~-----------------~~~~~~~~~~~----------- 80 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C-----------------AEGSWDFNDNT----------- 80 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C-----------------GGGCEETTTTB-----------
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCc-------c-----------------cccccccccCC-----------
Confidence 689999999999999999999999999998641 0 01122332210
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc
Q 040503 213 VIPQNLTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD 292 (767)
Q Consensus 213 ~~~~~~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~ 292 (767)
.......+..+|||||||+|+|....+. .+.||||+|+|+.+++.... ....++..++.+++..
T Consensus 81 ---~~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 144 (339)
T d2id4a2 81 ---NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSGD-----ITTEDEAASLIYGLDV 144 (339)
T ss_dssp ---SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTSC-----CCHHHHHHHTTTTTTT
T ss_pred ---CccCCCcccccccceeeecccccccccc--------cccccccccccceEEEeecc-----ccchHHHHHHHHHHhh
Confidence 1122445678999999999998754332 24799999999999997532 6677888888887665
Q ss_pred CCcEEEeccCCCCc----cCcc----cH-HHHHHHHHHhCCCEEEEecCCCCCCCCCccc----CCCceEEeccccCcce
Q 040503 293 GVDVISASLGSIAR----EHLK----NT-IAIGSFHAMMNGIVSVAAAGNSGPDDGSVEN----VAPWILTVGASTTDRE 359 (767)
Q Consensus 293 gvdVIn~SlG~~~~----~~~~----~~-~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgA~~~~~~ 359 (767)
.+|+|+|+|.... .... .. ...+...+..+|+++|+||||++........ ..+.+++|++++.
T Consensus 145 -~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 220 (339)
T d2id4a2 145 -NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH--- 220 (339)
T ss_dssp -CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT---
T ss_pred -CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc---
Confidence 5999999987521 1111 11 2233344557999999999998754333221 1234444444221
Q ss_pred eeeeEEecCceeEeeeeeeccccCCCCCceeeEeccccccccccccccCcccCCCCCCCCccceEEEEecCCchhHHHHH
Q 040503 360 FTSYVTLGNKMVIKGASVSQKGLLNDLDSYPLIGGADARIANVSEIDASECKKGSIDPAKVQGKILICYGARYGDEKGQW 439 (767)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 439 (767)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCceEEEEeccCCCCcccccccccccEEEeehhhHHHHHHHHhcCCCceEEEecCceeeccCCCCceecccCCCCCC
Q 040503 440 AAQAGAVGMILVSSKESGNKVLNMVHHLPTAHLNYTDGESVYAYINSTQNPTASMTNSKTEFNTRPSRMMAFFTSRGPNM 519 (767)
Q Consensus 440 ~~~~G~~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 519 (767)
.+..+.+|++|+..
T Consensus 221 ------------------------------------------------------------------~g~~~~~s~~~~~~ 234 (339)
T d2id4a2 221 ------------------------------------------------------------------KDLHPPYSEGCSAV 234 (339)
T ss_dssp ------------------------------------------------------------------TSCCCTTCCCCTTE
T ss_pred ------------------------------------------------------------------cccccccccccCcc
Confidence 24556677777643
Q ss_pred CCCCcccceEEeCCCcEEEeecCCCCCCCCCCCCCccceeeecccccchhhHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 040503 520 IDPAIFKPDVTAPGVDIIAAFTEASGPSPDETHKRRIPYIMMSGTSMSCPHVAGIVGLVKTLHPDWSPAAIKSAIMTTAR 599 (767)
Q Consensus 520 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 599 (767)
...++..+||..|.++.... ..|..++|||||||||||++|||+|++|+|++.|||.+|++||.
T Consensus 235 ----~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~ 298 (339)
T d2id4a2 235 ----MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 298 (339)
T ss_dssp ----EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred ----ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCc
Confidence 34567788999998876553 26889999999999999999999999999999999999999999
Q ss_pred cccCCCCcccCCCCCCCCCCCccCCCccCccCcCCC
Q 040503 600 AEDSSNRPILDQNTGEKATPFAYGAGHVNPNSALDP 635 (767)
Q Consensus 600 ~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 635 (767)
+++...................||||+||+.+||+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 299 GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccCCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 875443222111223344566799999999999974
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=4.4e-31 Score=285.53 Aligned_cols=163 Identities=21% Similarity=0.231 Sum_probs=106.5
Q ss_pred cCCCCCceEEEEecccCCCCCCCccCCCCCCCCCCccccccCCCCCcccCCcccceeEEcccchhhhhccCCCCCCCCCC
Q 040503 138 KARFGEDVIIANVDSGVWPESKSFADDGMGPIPSKWKGICQNDNYKGVSCNKKLIGIRYINQGTIEELRAKNPDAVIPQN 217 (767)
Q Consensus 138 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (767)
.+++|+||+|||||||||++||+|.+. |+. + ++. ..
T Consensus 19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---------------------~--~~~-------------~~ 54 (357)
T d1t1ga_ 19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---------------------L--GVS-------------AP 54 (357)
T ss_dssp TTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---------------------T--TCC-------------CC
T ss_pred CCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh---------------------c--CCC-------------CC
Confidence 688999999999999999999999642 000 0 000 00
Q ss_pred CCCCCCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHh---hhcCC
Q 040503 218 LTTGRDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLA---IHDGV 294 (767)
Q Consensus 218 ~~~~~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a---~~~gv 294 (767)
...+.|..+|+|||++++++...... .....+.||||+|+|+.+|+.... ..++.+++++ .+.++
T Consensus 55 ~~~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~--------~~~~~~i~~~~~~~~~~~ 122 (357)
T d1t1ga_ 55 QVVSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD--------AGFLNAITTAVHDPTHKP 122 (357)
T ss_dssp CEEEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH--------HHHHHHHHHHHHCTTTCC
T ss_pred CCceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC--------CchHHHHHHHHHhhhcCC
Confidence 11223566788888887765421100 011235899999999999996532 3344555554 45689
Q ss_pred cEEEeccCCCCccC---cccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--------ccCCCceEEeccccC
Q 040503 295 DVISASLGSIAREH---LKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGSV--------ENVAPWILTVGASTT 356 (767)
Q Consensus 295 dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------~~~~p~vitVgA~~~ 356 (767)
+|||+|||...... ....+......+..+|+++|+++||+|...... ....+++++|++...
T Consensus 123 ~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 195 (357)
T d1t1ga_ 123 SIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 195 (357)
T ss_dssp SEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred eEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecc
Confidence 99999999863221 223455666677789999999999998543221 124578888887543
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=1.7e-28 Score=266.55 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=94.6
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCcccccCCCCeEEEEEeecCCCCCCCCChhHHHHHHHHhhhc-CCcEEEec
Q 040503 222 RDEEGHGTHTLATAGGNFVPNVSVYGSGYGTAKGGSPKARVAAYKVCWKPNENDSCASADILSAYDLAIHD-GVDVISAS 300 (767)
Q Consensus 222 ~D~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~~~i~~aid~a~~~-gvdVIn~S 300 (767)
.+..+||||+++++.+.. ....+.||||+|+|+.+|++.+.+ .....+++++|+||+++ +++|||+|
T Consensus 65 ~~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~~Vis~S 132 (369)
T d1ga6a_ 65 SSNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQS---ASGNTGLTQAFNQAVSDNVAKVINVS 132 (369)
T ss_dssp CTTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECTT---SSTTHHHHHHHHHHHHHCCCSEEEEC
T ss_pred CCCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCCC---CcchHHHHHHHHHHHHcCCCceeecc
Confidence 356789999999987653 122348999999999999998776 47788999999999965 69999999
Q ss_pred cCCCC----ccCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-------------cccCCCceEEeccccC
Q 040503 301 LGSIA----REHLKNTIAIGSFHAMMNGIVSVAAAGNSGPDDGS-------------VENVAPWILTVGASTT 356 (767)
Q Consensus 301 lG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-------------~~~~~p~vitVgA~~~ 356 (767)
||... .....+.+..++.++.++||+||+||||+|..... .....+++++|+++..
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 133 LGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp CCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 99862 22344556777788889999999999999854322 1234578999988543
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=1e-08 Score=80.86 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=55.1
Q ss_pred CCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEcceeeeEEEEcCHHHHHHhhCCCCeEEEE
Q 040503 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYGRFINGFGAVLEEEHAKQLENHPGVVSVF 106 (767)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~~g~~~~~~~~~~~~l~~~~~V~~v~ 106 (767)
+++|||.||++... .....+.++++ ....++.+.|. .++||+++|++++++.|+++|+|.+||
T Consensus 1 e~~YIV~fK~~~~~---------~~~~~~~~~v~-------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE 63 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA---------MSSAKKKDVIS-------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE 63 (71)
T ss_dssp CEEEEEEECSSSSC---------CSHHHHHHHHH-------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred CCcEEEEECCCCCh---------HHHHHHHHHHH-------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence 46899999998653 12233333333 23468999998 799999999999999999999999999
Q ss_pred eCccccc
Q 040503 107 PDEGAKL 113 (767)
Q Consensus 107 ~~~~~~~ 113 (767)
+|+.++.
T Consensus 64 ~D~v~~a 70 (71)
T d1scjb_ 64 EDHIAHE 70 (71)
T ss_dssp ECCEEEE
T ss_pred CCcEEEc
Confidence 9998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.56 E-value=9e-08 Score=75.55 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCccccccceEEEEc-ceeeeEEEEcCHHHHHHhhCCCC--eE
Q 040503 27 KKPYVVYLGSHSHGSNPTSDDIDRARIRHHEFLGSFLGSVEEAESSIFHSYG-RFINGFGAVLEEEHAKQLENHPG--VV 103 (767)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~~g~~~~~~~~~~~~l~~~~~--V~ 103 (767)
..+|||+||+... ....+.+..++... ...+.+.|. +.|+||+++++++.++.|+++|. |.
T Consensus 2 aG~YIVvlK~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVS---------EDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCC---------HHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCC---------HHHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 3689999999765 24445555555443 345667777 68999999999999999999665 99
Q ss_pred EEEeCc
Q 040503 104 SVFPDE 109 (767)
Q Consensus 104 ~v~~~~ 109 (767)
+||+|.
T Consensus 66 yVE~D~ 71 (72)
T d1v5ib1 66 SIEEDH 71 (72)
T ss_dssp EEEECC
T ss_pred eECCCC
Confidence 999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.009 Score=55.00 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=53.6
Q ss_pred CCCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccCCCC------------------ccccc---------------
Q 040503 417 PAKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSKESG------------------NKVLN--------------- 462 (767)
Q Consensus 417 ~~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~~~~------------------~~~~~--------------- 462 (767)
..+++|||+|+.+|. .+.+|..+++++||.|+|+|.+.... +...+
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 357899999999999 89999999999999999999864311 00000
Q ss_pred -ccccccEEEeehhhHHHHHHHHh
Q 040503 463 -MVHHLPTAHLNYTDGESVYAYIN 485 (767)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~ 485 (767)
....||+.-|+..|++.|+..+.
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 01247999999999999987664
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
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class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.05 E-value=0.036 Score=45.70 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCCCeEEeecCCceEEEEEEEEecCCCC-ceEEEEEecCCCceEEEEcCEEEEeeCCcEEEEEEEEEEccCCCCCceee
Q 040503 680 FNYPSIAVPKLNGTITFTRKVKNVGAAN-STYKARTSEITGVSTIVEPSILNFTKYGEEKTFKVAFSVKGDDKPTDYGF 757 (767)
Q Consensus 680 ln~ps~~~~~~~~~~t~~rtvtnv~~~~-~ty~~~~~~p~g~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 757 (767)
+..|++.+.- ....+++.+|+|.|... ..-++.++.|.|=+++ |....+ ++|+++++++++++......+.|.+
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i 80 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYRV 80 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEEE
Confidence 4557777755 36899999999999765 3457788899997665 444455 7899999999999833445566554
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.068 Score=50.54 Aligned_cols=37 Identities=35% Similarity=0.434 Sum_probs=34.4
Q ss_pred CCccceEEEEecCC-chhHHHHHHHHcCceEEEEeccC
Q 040503 418 AKVQGKILICYGAR-YGDEKGQWAAQAGAVGMILVSSK 454 (767)
Q Consensus 418 ~~~~gkivl~~~g~-~~~~~~~~~~~~G~~g~i~~~~~ 454 (767)
-+++|||+|+.+|. .+.+|..++++.||.|+|+|.+.
T Consensus 77 i~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 77 INCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 47899999999999 89999999999999999999874
|