Citrus Sinensis ID: 040506

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
AGAHTLASSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
ccccccccccccccccccccEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccEEEccEEEEEEcccccEEEEEEEEEccccccccEEEEEccccccccEEEEEcHHHHHcccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccccccEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEcccccEEEEEEEEEccEEEEEEEccccEEEEEEEcccccEEEEEccccccccccccccccEEEEEccccccccccEEEEEEEcccc
ccccHcccccccccccccccEEEEccccEEEccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccccEEEEccccccccccccccccccccccccEEEEcccHHHccccEEEEEEEEEcccccEEEEEEEccccEEEEEEEEEccccccccHEEEEEccccccccEEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEEccccccHHHHHHHcccccccEEccHHHHHHHEEHHHHHccccEEEEEEccccccccEEccccccccEEEcccccHEEEcccccccccccEEEEEEccccc
agahtlasssppppvpkkipyeasahgltwqdpyhwmkntndpdfinhlnhensyaqasmsdTQTLQRTLFSEMknrmpskistpperwgpwlyyqyipegkeyplLCRRLETEKSGWLQTVFHNvrggfgkeeILLDWNEIAEKygyvhvgtcrvspdhnflaytidtsgDEQFMLQIKDLrnqcivprvlctklgsdstddapiftegdsgfcvditstkdgkfitvnsnsrasseeglcdrcdqsiseneecssgdyylaRCRAEKLYSANwqniilpgedislqdmdifDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIenlnpwffplpssscsivpgsnhdfMSSVYRAVLSSPVV
agahtlasssppppvpKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEmknrmpskistpperwgPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITstkdgkfitvnsnsrasseeglcDRCDQsiseneecssgDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
AGAHTLAsssppppvpKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
*************************HGLTWQDPYHWMKNTNDPDFINHL**************************************RWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITV***************************SGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYR********
***************PKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
**************VPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVN*************RCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
***********PPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPV*
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AGAHTLASSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKLGSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCDRCDQSISENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q59536 690 Protease 2 OS=Moraxella l N/A no 0.602 0.318 0.285 4e-25
P55627 754 Uncharacterized peptidase no no 0.421 0.204 0.288 1e-15
P24555 686 Protease 2 OS=Escherichia N/A no 0.775 0.412 0.214 7e-15
P55656 705 Uncharacterized peptidase no no 0.446 0.231 0.245 6e-11
Q5ZKL5 732 Prolyl endopeptidase-like yes no 0.758 0.378 0.214 5e-09
Q32N48 707 Prolyl endopeptidase-like N/A no 0.347 0.179 0.276 1e-05
>sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1 Back     alignment and function desciption
 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 121/263 (46%), Gaps = 43/263 (16%)

Query: 14  PVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSE 73
           P+ K+IP+    HG   +D Y+W+K+ ++ + I +L  EN Y    M   Q     ++  
Sbjct: 4   PIAKRIPHPHELHGDVREDDYYWLKDRDNTEVIQYLEEENRYYHEIMRPLQEQTEQIYES 63

Query: 74  MKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKE 133
           M +R+P      P + G + YY  + + K+YP+  R+ +      LQ            E
Sbjct: 64  MVDRVPDSEMKVPVQHGQFFYYSRLDKNKQYPIYARK-QAASRALLQD---------ATE 113

Query: 134 EILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCI----VP 189
           E++LD NE+AE+  Y+ V   R++ DH+ LAY  +  G +++ + IKDL    +    VP
Sbjct: 114 EVVLDLNELAEEDDYLSVTVQRMTTDHSRLAYLENRDGTDRYTIYIKDLNTGELLSDRVP 173

Query: 190 RVLCT-----------------------------KLGSDSTDDAPIFTEGDSGFCVDITS 220
            V                                +LGSD   D  IF E D  F + I+ 
Sbjct: 174 NVYIYGSMEWCRCGDYIFYTTVDEHQRPCQLWRHRLGSDVESDELIFEEKDDTFTLFISK 233

Query: 221 TKDGKFITVNSNSRASSEEGLCD 243
           ++ GKFI V S+S+ +SE  + D
Sbjct: 234 SQSGKFIFVYSSSKTTSEIHMID 256
Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues.
Moraxella lacunata (taxid: 477)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 3
>sp|P55627|Y4QF_RHISN Uncharacterized peptidase y4qF OS=Rhizobium sp. (strain NGR234) GN=NGR_a01920 PE=3 SV=1 Back     alignment and function description
>sp|P24555|PTRB_ECOLI Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2 Back     alignment and function description
>sp|P55656|Y4SO_RHISN Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZKL5|PPCEL_CHICK Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1 Back     alignment and function description
>sp|Q32N48|PPCEL_XENLA Prolyl endopeptidase-like OS=Xenopus laevis GN=prepl PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
225424985 971 PREDICTED: protease 2-like [Vitis vinife 0.964 0.362 0.585 1e-138
255547055 859 oligopeptidase B, putative [Ricinus comm 0.980 0.416 0.570 1e-137
449435286 801 PREDICTED: protease 2-like [Cucumis sati 0.956 0.435 0.548 1e-129
449478626 800 PREDICTED: LOW QUALITY PROTEIN: protease 0.956 0.436 0.548 1e-128
357488089 802 Prolyl endopeptidase-like protein [Medic 0.956 0.435 0.549 1e-124
356502659 772 PREDICTED: protease 2-like [Glycine max] 0.953 0.450 0.565 1e-119
297738197 736 unnamed protein product [Vitis vinifera] 0.958 0.475 0.565 1e-118
12323208 798 putative protease [Arabidopsis thaliana] 0.967 0.442 0.497 1e-117
30697784 757 prolyl oligopeptidase-like protein [Arab 0.964 0.464 0.522 1e-113
297841629 754 prolyl oligopeptidase family protein [Ar 0.964 0.466 0.515 1e-109
>gi|225424985|ref|XP_002266813.1| PREDICTED: protease 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/415 (58%), Positives = 292/415 (70%), Gaps = 63/415 (15%)

Query: 13  PPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFS 72
           PPVPKK+P+  SAHG +WQDPYHWM NT DPD   +L HENSYA+A M+DT  LQRTLFS
Sbjct: 217 PPVPKKVPFTVSAHGTSWQDPYHWMSNTADPDLSAYLRHENSYAEAFMADTLNLQRTLFS 276

Query: 73  EMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGK 132
           EM +RMP+ ISTP ERWGPWLYYQYIPEGKEYP+LCR+L T+ +GW ++  +NV G FG+
Sbjct: 277 EMNSRMPTNISTPTERWGPWLYYQYIPEGKEYPVLCRKLATQTNGWAKSFLNNVIGEFGR 336

Query: 133 EEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVP--- 189
           E++LLDWNEIAE+YGYVHVGTCRVSPDHNFLAYT+D +G E+FMLQIKDL + CI+P   
Sbjct: 337 EKVLLDWNEIAEEYGYVHVGTCRVSPDHNFLAYTLDITGSERFMLQIKDLHSGCILPDLR 396

Query: 190 ----------------------------RVLCTKLGSDSTDDAPIFTEGDSGFCVDITST 221
                                       RV C KLGSD+ +D P+FTE D  FCVDITST
Sbjct: 397 VDGVVSLAWAQDGCTLFYTTTDENQRPYRVQCIKLGSDAVNDVPVFTESDPSFCVDITST 456

Query: 222 KDGKFITVNSNSRASS----------EEGLCDRCDQSIS--------------------- 250
           KDGKFITVNSNSR+SS          EEGL  R ++ +                      
Sbjct: 457 KDGKFITVNSNSRSSSEVFVINATNPEEGL-RRMNKRVPGVQYFLEHHHGFFYILTNAPL 515

Query: 251 ENEECSSGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLC 310
            ++E S GDYYLARC+ + +  ANWQNIILPGEDIS+QDMDIF GHLVLF++ KG  M+C
Sbjct: 516 TDKELSVGDYYLARCQVDDVQLANWQNIILPGEDISIQDMDIFHGHLVLFLNSKGCSMIC 575

Query: 311 SIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV 365
           SI++ I+   K QMEI +L+PWFFPLPS  C +VP SNHDFM+ VYR V+SSPV+
Sbjct: 576 SINMPIDVNYKQQMEIGDLSPWFFPLPSGLCKVVPCSNHDFMNFVYRVVVSSPVM 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547055|ref|XP_002514585.1| oligopeptidase B, putative [Ricinus communis] gi|223546189|gb|EEF47691.1| oligopeptidase B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435286|ref|XP_004135426.1| PREDICTED: protease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478626|ref|XP_004155373.1| PREDICTED: LOW QUALITY PROTEIN: protease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488089|ref|XP_003614332.1| Prolyl endopeptidase-like protein [Medicago truncatula] gi|355515667|gb|AES97290.1| Prolyl endopeptidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356502659|ref|XP_003520135.1| PREDICTED: protease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297738197|emb|CBI27398.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|12323208|gb|AAG51580.1|AC011665_1 putative protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697784|ref|NP_177065.2| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|332196755|gb|AEE34876.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841629|ref|XP_002888696.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334537|gb|EFH64955.1| prolyl oligopeptidase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
TAIR|locus:2205415 757 AT1G69020 [Arabidopsis thalian 0.591 0.285 0.630 1.9e-108
TAIR|locus:2158098 792 AT5G66960 [Arabidopsis thalian 0.479 0.220 0.383 5.3e-47
UNIPROTKB|P71835236 ptrBa "PROBABLE PROTEASE II PT 0.454 0.703 0.341 1.4e-23
TAIR|locus:2011997 710 AT1G50380 [Arabidopsis thalian 0.449 0.230 0.325 6.1e-23
TIGR_CMR|CPS_4644 719 CPS_4644 "protease II" [Colwel 0.427 0.216 0.308 4.3e-19
UNIPROTKB|Q4KGJ9 684 ptrB "Protease 2" [Pseudomonas 0.402 0.214 0.343 3.5e-16
TIGR_CMR|CPS_3026 704 CPS_3026 "protease II" [Colwel 0.413 0.214 0.291 4.1e-14
TIGR_CMR|SO_0144 711 SO_0144 "protease II" [Shewane 0.257 0.132 0.385 5.9e-12
UNIPROTKB|P24555 686 ptrB "oligopeptidase B" [Esche 0.438 0.233 0.268 3.5e-09
UNIPROTKB|Q5ZKL5 732 PREPL "Prolyl endopeptidase-li 0.104 0.051 0.526 1.1e-05
TAIR|locus:2205415 AT1G69020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 751 (269.4 bits), Expect = 1.9e-108, Sum P(2) = 1.9e-108
 Identities = 140/222 (63%), Positives = 171/222 (77%)

Query:    17 KKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKN 76
             KKIP+  S+HG+T QDP+HWMKNT+D DF++ L  ENSY+QA M+DT+TL+R LFSEMK 
Sbjct:    44 KKIPFAISSHGITRQDPFHWMKNTDDTDFVDFLKRENSYSQAFMADTETLRRDLFSEMKT 103

Query:    77 RMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEIL 136
             R+P +I TPPERWG WLY QYIP+GKEYPLLCRRLE  K+ WL  +F   RG   +EE++
Sbjct:   104 RIPEEIFTPPERWGQWLYRQYIPKGKEYPLLCRRLEKGKTNWLSGLF---RGE--EEEVV 158

Query:   137 LDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIVPRVLCTKL 196
             LDWN+IAE++GYVHVG CRVSPDHN+LAYT+D  GD   +       NQ    RV+ T +
Sbjct:   159 LDWNQIAEQFGYVHVGVCRVSPDHNYLAYTVDPEGDGITLFYTVTDENQR-PHRVVVTNV 217

Query:   197 GSDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSE 238
              SD  DDA +FTE DS FCVDIT+TKDGKF+T+NSNSR SSE
Sbjct:   218 ESDGRDDAVVFTERDSSFCVDITTTKDGKFVTINSNSRTSSE 259
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008236 "serine-type peptidase activity" evidence=IEA;ISS
GO:0070008 "serine-type exopeptidase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2158098 AT5G66960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P71835 ptrBa "PROBABLE PROTEASE II PTRBA [FIRST PART] (OLIGOPEPTIDASE B)" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TAIR|locus:2011997 AT1G50380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4644 CPS_4644 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KGJ9 ptrB "Protease 2" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3026 CPS_3026 "protease II" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0144 SO_0144 "protease II" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P24555 ptrB "oligopeptidase B" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKL5 PREPL "Prolyl endopeptidase-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021138001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (870 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
COG1770 682 COG1770, PtrB, Protease II [Amino acid transport a 9e-55
pfam02897412 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, 1e-33
PRK10115 686 PRK10115, PRK10115, protease 2; Provisional 4e-20
COG1505 648 COG1505, COG1505, Serine proteases of the peptidas 9e-05
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] Back     alignment and domain information 
 Score =  190 bits (485), Expect = 9e-55
 Identities = 115/407 (28%), Positives = 178/407 (43%), Gaps = 82/407 (20%)

Query: 11  PPPPVPKKIPYEASAHGLTWQDPYHWMKNTN--DPDFINHLNHENSYAQASMSDTQTLQR 68
           P PP+ KK+P   + HG T  D Y W+++ N  +P+ + +L  EN+Y +A M+  Q LQ+
Sbjct: 4   PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQK 63

Query: 69  TLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRG 128
            +F E+K R+     + P R GP+ YY    EGKEYP+ CR+                  
Sbjct: 64  KIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQP---------------DE 108

Query: 129 GFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQCIV 188
           G   EE+LLD N+ AE + +  +G   +SPDHN LAY++D  GDEQ+ L+ KDL     +
Sbjct: 109 GGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEEL 168

Query: 189 P-------------------------------RVLCTKLGSDSTDDAPIFTEGDSGFCVD 217
           P                               +V   +LG+  + D  ++ E D  F + 
Sbjct: 169 PDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLS 228

Query: 218 ITSTKDGKFITVNSNSRASSEEGLCDRCD-----QSISENEE------CSSGDYYLARCR 266
           +  ++   +I ++  S  +SE  L D  D     + +   E          GD +     
Sbjct: 229 VGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSN 288

Query: 267 AE----KLYSA-------NWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLS 315
           A+    KL  A       NW+ +I   ED+ L+ +D+F  HLVL   ++G+P +   D  
Sbjct: 289 ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRK 348

Query: 316 INFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSS 362
              E      I       F   + S  +    N +F S   R   SS
Sbjct: 349 TGEE----RGIA------FDDEAYSAGLSG--NPEFDSDRLRYSYSS 383

Length = 682
>gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain Back     alignment and domain information
>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional Back     alignment and domain information
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
COG1770 682 PtrB Protease II [Amino acid transport and metabol 100.0
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 100.0
PRK10115 686 protease 2; Provisional 100.0
KOG2237 712 consensus Predicted serine protease [Posttranslati 100.0
COG1505 648 Serine proteases of the peptidase family S9A [Amin 100.0
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.95
PRK04792448 tolB translocation protein TolB; Provisional 98.01
PRK00178430 tolB translocation protein TolB; Provisional 97.72
PRK04922433 tolB translocation protein TolB; Provisional 97.64
PRK04043419 tolB translocation protein TolB; Provisional 97.62
PRK05137435 tolB translocation protein TolB; Provisional 97.58
PRK01029428 tolB translocation protein TolB; Provisional 97.35
PRK00178430 tolB translocation protein TolB; Provisional 97.3
PRK03629429 tolB translocation protein TolB; Provisional 97.29
PRK04043419 tolB translocation protein TolB; Provisional 97.28
PRK02889427 tolB translocation protein TolB; Provisional 97.23
PRK02889427 tolB translocation protein TolB; Provisional 97.2
PRK04922433 tolB translocation protein TolB; Provisional 97.07
PRK04792448 tolB translocation protein TolB; Provisional 96.91
PRK05137435 tolB translocation protein TolB; Provisional 96.81
PRK03629429 tolB translocation protein TolB; Provisional 96.68
PRK01742429 tolB translocation protein TolB; Provisional 96.64
KOG2237 712 consensus Predicted serine protease [Posttranslati 96.39
PRK01029428 tolB translocation protein TolB; Provisional 96.18
COG0823425 TolB Periplasmic component of the Tol biopolymer t 95.78
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 95.63
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 95.56
KOG2110391 consensus Uncharacterized conserved protein, conta 93.77
COG4946668 Uncharacterized protein related to the periplasmic 93.34
KOG0279315 consensus G protein beta subunit-like protein [Sig 93.11
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 92.89
PF0767639 PD40: WD40-like Beta Propeller Repeat; InterPro: I 92.66
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 91.84
PRK01742429 tolB translocation protein TolB; Provisional 90.86
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 90.65
COG0823425 TolB Periplasmic component of the Tol biopolymer t 90.57
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 89.91
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 89.71
COG4946 668 Uncharacterized protein related to the periplasmic 89.6
PF02239 369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 88.92
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 87.84
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 87.64
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 87.02
KOG4497 447 consensus Uncharacterized conserved protein WDR8, 85.63
KOG2048 691 consensus WD40 repeat protein [General function pr 85.54
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 85.22
KOG0283 712 consensus WD40 repeat-containing protein [Function 85.1
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 84.75
KOG0771398 consensus Prolactin regulatory element-binding pro 84.34
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 84.26
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 83.87
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 83.71
KOG1539 910 consensus WD repeat protein [General function pred 83.33
KOG2111346 consensus Uncharacterized conserved protein, conta 83.11
PRK10115 686 protease 2; Provisional 83.11
KOG0271 480 consensus Notchless-like WD40 repeat-containing pr 82.48
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 82.26
KOG0315311 consensus G-protein beta subunit-like protein (con 81.82
KOG0315311 consensus G-protein beta subunit-like protein (con 81.61
KOG0263707 consensus Transcription initiation factor TFIID, s 81.51
KOG0263707 consensus Transcription initiation factor TFIID, s 80.26
>COG1770 PtrB Protease II [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.7e-68  Score=514.92  Aligned_cols=329  Identities=33%  Similarity=0.569  Sum_probs=305.9

Q ss_pred             CCCCCCCCCCCCeEEccCCCeeecccccccCCC--ChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 040506            9 SSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTN--DPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPP   86 (365)
Q Consensus         9 ~~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~--~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p   86 (365)
                      +.|.||+|+|.|+..+.||.++.|+|+||+|.+  +|+|++||+|||+||++.|+++++|+++|++||+.++++++.|+|
T Consensus         2 ~~p~pP~a~k~~~~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp   81 (682)
T COG1770           2 NLPLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVP   81 (682)
T ss_pred             CCCCCCCccccceeeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCc
Confidence            456799999999999999999999999999998  999999999999999999999999999999999999999999999


Q ss_pred             eeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEE
Q 040506           87 ERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYT  166 (365)
Q Consensus        87 ~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~  166 (365)
                      .+.|+|+||.|...|++|+++||++..               +...||+|||+|++|+++.|+.+|.+.+|||++++||+
T Consensus        82 ~~~~~~~Yy~r~~~g~~y~~~~R~~~~---------------g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s  146 (682)
T COG1770          82 YRKGPYEYYSRTEEGKEYPIYCRQPDE---------------GGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYS  146 (682)
T ss_pred             cccCCeeEEEEecCCCcceeEEeccCC---------------CCCceeEeecchhccCcccceeeeeeeeCCCCceEEEE
Confidence            999999999999999999999997643               11258999999999999999999999999999999999


Q ss_pred             EcCCCCeEEEEEEEECCCCcccC-------------------------------eEEEEECCCCCCCCccEEeeCCCCeE
Q 040506          167 IDTSGDEQFMLQIKDLRNQCIVP-------------------------------RVLCTKLGSDSTDDAPIFTEGDSGFC  215 (365)
Q Consensus       167 ~d~~G~e~~~l~v~Dl~tg~~l~-------------------------------~v~~h~lGt~~~~d~lvf~e~d~~~~  215 (365)
                      +|..|+|+|+|+|+||+||+.++                               +||+|++|+++.+|++||+|+|+.|+
T Consensus       147 ~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~  226 (682)
T COG1770         147 VDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF  226 (682)
T ss_pred             EecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEE
Confidence            99999999999999999998875                               89999999999999999999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcceEEEEEeCCC---------------ceeecCc--------cccCCcEEEEEEecCcCCC
Q 040506          216 VDITSTKDGKFITVNSNSRASSEEGLCDRCD---------------QSISENE--------ECSSGDYYLARCRAEKLYS  272 (365)
Q Consensus       216 ~~~~~s~d~~~l~i~~~~~~tsev~~~d~~~---------------~~~~~~~--------~~~~~~~~l~~~~~~~~~~  272 (365)
                      +++.+|.+++||+|.+++..+||+++++.+.               +|.++|+        |.+|.+|.|+++++ .+++
T Consensus       227 ~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~l~~ap~-~~~~  305 (682)
T COG1770         227 LSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAPV-SADK  305 (682)
T ss_pred             EEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceEEEEccC-CCCh
Confidence            9999999999999999999999999999442               4555543        34678999999999 7888


Q ss_pred             CCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCCCCCeeeeecCCCCCCC
Q 040506          273 ANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDFM  352 (365)
Q Consensus       273 ~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~  352 (365)
                      ++|+++|+|+++..|++|.+|+++||+.+|++|.|+|++.+.+++.            ++.|.||+.+++++++.|.+|+
T Consensus       306 ~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~------------~~~i~f~~~ay~~~l~~~~e~~  373 (682)
T COG1770         306 SNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE------------ERGIAFDDEAYSAGLSGNPEFD  373 (682)
T ss_pred             hcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc------------eeeEEecchhhhccccCCCCCC
Confidence            9999999999999999999999999999999999999999987553            3569999999999999999999


Q ss_pred             CCEEEEEEeccCC
Q 040506          353 SSVYRAVLSSPVV  365 (365)
Q Consensus       353 s~~~~~~~sS~~~  365 (365)
                      ++.|||+|+||+|
T Consensus       374 s~~lR~~ysS~tt  386 (682)
T COG1770         374 SDRLRYSYSSMTT  386 (682)
T ss_pred             CccEEEEeecccc
Confidence            9999999999986

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2xe4_A 751 Structure Of Oligopeptidase B From Leishmania Major 1e-15
2bkl_A 695 Structural And Mechanistic Analysis Of Two Prolyl E 2e-04
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 31  QDPYHWMKNTN--DPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPER 88
           +DPY WM++ +  DP  I HLN E  Y QA  +D   L+  +++E  + +     + P  
Sbjct: 65  EDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYV 124
Query: 89  WGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGY 148
           +G + YY    +GK Y + CR    ++            G    EE+++D N++AE   +
Sbjct: 125 YGKYRYYTREVKGKPYKIYCRVFTDKEP-----------GDVAAEEVIIDVNQVAEGKAF 173
Query: 149 VHVGTCR-VSPDHNFLAYTIDTSGDEQFMLQIKDLRN--QCIVPRVLCT 194
             V   +   P+H+ +A+++D SG+E + ++ K + +  Q I  +V  T
Sbjct: 174 CDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT 222
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 1e-70
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 3e-56
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 3e-55
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 1e-47
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 1e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 Back     alignment and structure
 Score =  233 bits (597), Expect = 1e-70
 Identities = 74/433 (17%), Positives = 156/433 (36%), Gaps = 88/433 (20%)

Query: 7   ASSSPPPPVPKKIPYEASAHGL--------------TWQDPYHWMKNTN--DPDFINHLN 50
            ++S  PP+  K P+  +   +                +DPY WM++ +  DP  I HLN
Sbjct: 27  VAASAQPPIAAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLN 86

Query: 51  HENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPPERWGPWLYYQYIPEGKEYPLLCRR 110
            E  Y QA  +D   L+  +++E  + +     + P  +G + YY    +GK Y + CR 
Sbjct: 87  KEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRV 146

Query: 111 LETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCR-VSPDHNFLAYTIDT 169
              ++            G    EE+++D N++AE   +  V   +   P+H+ +A+++D 
Sbjct: 147 FTDKEP-----------GDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDM 195

Query: 170 SGDEQFMLQIKDLRNQC-IVP-------------------------------RVLCTKLG 197
           SG+E + ++ K + +    +                                +V    +G
Sbjct: 196 SGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255

Query: 198 SDSTDDAPIFTEGDSGFCVDITSTKDGKFITVNSNSRASSEEGLCD----------RCDQ 247
              ++D  ++ E +  F   +    D   + + S S  ++E  L D             +
Sbjct: 256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315

Query: 248 SISENEECS----SGDYYLARCRAE-----KLYSA------NWQNIILP-GEDISLQDMD 291
              +            + +           KL  A      +W ++++   ED+ ++ + 
Sbjct: 316 PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA 375

Query: 292 IFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPLPSSSCSIVPGSNHDF 351
           +   +LV+   + G+  + ++                L       P  +  +V     ++
Sbjct: 376 VRSNYLVVAGRRAGLTRIWTMMADSQDG--VFKAGTGLREVVMEEPIFTVHLVESQMLEY 433

Query: 352 MSSVYRAVLSSPV 364
               +R   SS  
Sbjct: 434 EEPTFRMEYSSLA 446
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 100.0
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 100.0
4hvt_A 711 Ritya.17583.B, post-proline cleaving enzyme; ssgci 100.0
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 100.0
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 100.0
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 100.0
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 97.71
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 97.32
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 97.03
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 96.84
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 96.62
3pe7_A 388 Oligogalacturonate lyase; seven-bladed beta-propel 96.45
3c5m_A 396 Oligogalacturonate lyase; blade-shaped beta-propel 96.42
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 96.35
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 96.29
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 96.28
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 96.27
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 96.26
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 96.04
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 96.02
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.96
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 95.79
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 95.65
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.61
1z68_A 719 Fibroblast activation protein, alpha subunit; sepr 95.21
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 95.16
1k32_A 1045 Tricorn protease; protein degradation, substrate g 95.1
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 94.89
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 94.6
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 94.48
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 94.45
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 94.31
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 94.23
1xfd_A 723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 93.79
4a5s_A 740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 93.71
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 93.68
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.65
2xe4_A 751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 93.61
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 93.47
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 93.2
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 92.94
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 92.82
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 92.14
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 92.04
1k32_A 1045 Tricorn protease; protein degradation, substrate g 91.74
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.73
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 91.46
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 91.11
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 90.99
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 90.91
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 89.94
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 89.83
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.17
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 89.04
4g56_B357 MGC81050 protein; protein arginine methyltransfera 89.01
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 88.9
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 88.76
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 88.75
2oiz_A 361 Aromatic amine dehydrogenase, large subunit; oxido 88.06
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 88.04
3ow8_A321 WD repeat-containing protein 61; structural genomi 88.01
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 88.0
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 87.34
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 87.13
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 86.42
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 86.14
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 85.92
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 85.91
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 85.29
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 85.26
2oit_A 434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 84.53
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 84.51
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 84.4
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 84.33
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 84.27
1erj_A 393 Transcriptional repressor TUP1; beta-propeller, tr 84.23
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 84.1
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 84.05
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 83.88
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 83.26
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 83.24
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 82.83
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 82.74
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 82.21
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 81.91
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 81.87
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 81.76
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 81.76
4g56_B357 MGC81050 protein; protein arginine methyltransfera 81.31
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 81.15
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 80.94
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 80.55
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 80.36
2ymu_A 577 WD-40 repeat protein; unknown function, two domain 80.3
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-53  Score=440.08  Aligned_cols=329  Identities=17%  Similarity=0.218  Sum_probs=278.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCC
Q 040506            2 GAHTLASSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSK   81 (365)
Q Consensus         2 ~~~~~~~~~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~   81 (365)
                      |.|..+...+.||+|+|+|+++++||+++.|||+||||.++|+|++||++||+||+++|+++ +++++|++||+++++++
T Consensus         1 ~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~l~~~~~~~~~~~   79 (693)
T 3iuj_A            1 GSHMSGKARLHYPVTRQGEQVDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQI-PYRAAIKEKLAASWNYA   79 (693)
T ss_dssp             ---------CCCCCCCCCCCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHSCCC
T ss_pred             CCccccccCCCCCCCCCCCeEEEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHHHhhccc
Confidence            56777888888999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             CCCCCeeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCC
Q 040506           82 ISTPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHN  161 (365)
Q Consensus        82 ~~~~p~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~  161 (365)
                      +.++|.++|+|+||+|++++++|+++||+..                 .+.||+|||+|+++++ +++.++++++||||+
T Consensus        80 ~~~~p~~~g~~~y~~~~~~~~~~~~~~r~~~-----------------~~~~~vllD~n~la~~-~~~~l~~~~~SpDg~  141 (693)
T 3iuj_A           80 KEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-----------------GKPAEVFLDPNTLSPD-GTTALDQLSFSRDGR  141 (693)
T ss_dssp             EECCCEEETTEEEEEEECSSCSSCEEEEECT-----------------TSCCEEEECGGGGSTT-SCCEEEEEEECTTSS
T ss_pred             cCCCCEEECCEEEEEEEcCCCceeEEEEeCC-----------------CCCcEEEEehhhccCC-CcEEEEEEEECCCCC
Confidence            9999999999999999999999999999753                 2568999999999998 677899999999999


Q ss_pred             EEEEEEcCCCCeEEEEEEEECCCCcccC---------------------------------------eEEEEECCCCCCC
Q 040506          162 FLAYTIDTSGDEQFMLQIKDLRNQCIVP---------------------------------------RVLCTKLGSDSTD  202 (365)
Q Consensus       162 ~la~~~d~~G~e~~~l~v~Dl~tg~~l~---------------------------------------~v~~h~lGt~~~~  202 (365)
                      +|||+++.+|+|+++|+|+|++||+.+.                                       +||+|++|+++.+
T Consensus       142 ~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~  221 (693)
T 3iuj_A          142 ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED  221 (693)
T ss_dssp             EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred             EEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence            9999999999999999999999998653                                       2999999999999


Q ss_pred             CccEEeeCC--CCeEEEEEEcCCCcEEEEEeCCCcc-eEEEEEeCCC-----ceeec-----------Cc-------ccc
Q 040506          203 DAPIFTEGD--SGFCVDITSTKDGKFITVNSNSRAS-SEEGLCDRCD-----QSISE-----------NE-------ECS  256 (365)
Q Consensus       203 d~lvf~e~d--~~~~~~~~~s~d~~~l~i~~~~~~t-sev~~~d~~~-----~~~~~-----------~~-------~~~  256 (365)
                      |++||++++  +.+++++..|+||++|+|.+.++.+ +++|+++.+.     ..+..           ++       +.+
T Consensus       222 ~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~  301 (693)
T 3iuj_A          222 DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRD  301 (693)
T ss_dssp             CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTT
T ss_pred             ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCC
Confidence            999999876  5567888999999999999887765 7999998532     11111           11       124


Q ss_pred             CCcEEEEEEecCcCCCCCceEEeCCCCCceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCCccccCC
Q 040506          257 SGDYYLARCRAEKLYSANWQNIILPGEDISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLNPWFFPL  336 (365)
Q Consensus       257 ~~~~~l~~~~~~~~~~~~w~~vi~~~~~~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~~~~i~~  336 (365)
                      ++++.|+.+++.++...+|++|+++.++. + +++.++++||+.++++|.++|++++++++.            ...+++
T Consensus       302 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~------------~~~l~~  367 (693)
T 3iuj_A          302 APNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDATARVEQFDYEGKR------------VREVAL  367 (693)
T ss_dssp             CTTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETTEEEEEEECTTSCE------------EEEECC
T ss_pred             CCCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECCeeEEEEEECCCCe------------eEEeec
Confidence            56788888888876667899999887664 6 999999999999999999999999997542            246788


Q ss_pred             CCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506          337 PSSSCSIVPGSNHDFMSSVYRAVLSSPVV  365 (365)
Q Consensus       337 p~~~~~~~~~~~~~~~s~~~~~~~sS~~~  365 (365)
                      |+.+++..++.+  ++++.++|+++|+++
T Consensus       368 p~~~~~~~~~~~--~d~~~l~~~~ss~~t  394 (693)
T 3iuj_A          368 PGLGSVSGFNGK--HDDPALYFGFENYAQ  394 (693)
T ss_dssp             SSSSEEEECCCC--TTCSCEEEEEECSSS
T ss_pred             CCCceEEeeecC--CCCCEEEEEecCCCC
Confidence            887766666554  679999999999864
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1qfma1430 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin 1e-23
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 99.3 bits (246), Expect = 1e-23
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 25/208 (12%)

Query: 8   SSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQ 67
            S   P V +        HG    DPY W+++ +       +  +N      +   Q   
Sbjct: 2   LSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLE--QCPI 59

Query: 68  RTLFSEMKNRMPSKI-STPPERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNV 126
           R L+ E    +      +   + G   +Y Y    +   +L  +                
Sbjct: 60  RGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQ---------------- 103

Query: 127 RGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYTIDTSGDEQFMLQIKDLRNQC 186
               G+  + LD N +++       G    S D  + AY +  SG +   ++   +    
Sbjct: 104 DSLEGEARVFLDPNILSDDGTVALRGYAF-SEDGEYFAYGLSASGSDWVTIKFMKVDGAK 162

Query: 187 IVPRVLCTKLGSDSTDDAPIFTEGDSGF 214
            +P VL              +T    G 
Sbjct: 163 ELPDVLE-----RVKFSCMAWTHDGKGM 185

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 100.0
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 96.94
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 96.87
d2bgra1 470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 96.07
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 95.92
d1xfda1 465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 95.86
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 94.44
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 94.07
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 93.98
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 93.94
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 93.47
d2madh_ 373 Methylamine dehydrogenase, H-chain {Gram negative 92.8
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 92.75
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 91.75
d1erja_ 388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 91.66
d1k32a3 360 Tricorn protease domain 2 {Archaeon Thermoplasma a 91.52
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 91.49
d2bbkh_ 355 Methylamine dehydrogenase, H-chain {Paracoccus den 90.29
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 90.19
d1jmxb_ 346 Quinohemoprotein amine dehydrogenase B chain {Pseu 90.18
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 90.07
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 89.88
d1jmxb_ 346 Quinohemoprotein amine dehydrogenase B chain {Pseu 89.66
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 89.01
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 88.32
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 87.43
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 87.2
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 87.18
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 85.59
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 84.75
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 83.73
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 83.43
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 82.98
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 82.05
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 81.47
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 81.14
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.3e-58  Score=447.08  Aligned_cols=327  Identities=15%  Similarity=0.158  Sum_probs=274.4

Q ss_pred             CCCCCCCCCCCCCCeEEccCCCeeecccccccCCCChhHHHHHHHHhHHHHHHhCCcHHHHHHHHHHHhhcCCCCCCCCC
Q 040506            7 ASSSPPPPVPKKIPYEASAHGLTWQDPYHWMKNTNDPDFINHLNHENSYAQASMSDTQTLQRTLFSEMKNRMPSKISTPP   86 (365)
Q Consensus         7 ~~~~~~~P~a~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~~l~~en~~t~~~l~~~~~l~~~l~~e~~~~~~~~~~~~p   86 (365)
                      |+++.-||++++.++++++||+++.|||+||||.++|+|++||++||+||+++|++. |+++.|.+++++++..++.++|
T Consensus         1 ~~~~~yP~~~~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~wl~~eN~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~~p   79 (430)
T d1qfma1           1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQC-PIRGLYKERMTELYDYPKYSCH   79 (430)
T ss_dssp             CCCSCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHSS-THHHHHHHHHHHHTCSCEECCC
T ss_pred             CCCCCCCCCcCCCCeeeccCCCEEeeCchhhcCCCCHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhhcCCceeee
Confidence            455555677777889999999999999999999999999999999999999999988 8999999999999888889999


Q ss_pred             eeeCCeEEEEEccCCCccceEEEecCcccCCccceeeccccCCCCceEEEeccchhccCCCeEEEeeEEeCCCCCEEEEE
Q 040506           87 ERWGPWLYYQYIPEGKEYPLLCRRLETEKSGWLQTVFHNVRGGFGKEEILLDWNEIAEKYGYVHVGTCRVSPDHNFLAYT  166 (365)
Q Consensus        87 ~~~g~~~Y~~~~~~~~~~~i~~R~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~~Spdg~~la~~  166 (365)
                      .+.|+++||.++.+++.+.++||+...                .+.+|+|||+|++++++ ++.++++++||||++|||+
T Consensus        80 ~~~g~~y~~~~~~~~~~~~~~~~~~~~----------------~~~~evllD~n~la~~~-~~~~~~~~~Spd~~~la~s  142 (430)
T d1qfma1          80 FKKGKRYFYFYNTGLQNQRVLYVQDSL----------------EGEARVFLDPNILSDDG-TVALRGYAFSEDGEYFAYG  142 (430)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSS----------------SSCCEEEECGGGGCSSS-CEEEEEEEECTTSSEEEEE
T ss_pred             EEeCCEEEEEEecCCCccceEEecccc----------------CCCeeeecchhhhcccc-cceecceEecCCCCEEEEE
Confidence            999999999999988888888877532                36789999999999874 5566778999999999999


Q ss_pred             EcCCCCeEEEEEEEECCCCcccC-------------------------------------------eEEEEECCCCCCCC
Q 040506          167 IDTSGDEQFMLQIKDLRNQCIVP-------------------------------------------RVLCTKLGSDSTDD  203 (365)
Q Consensus       167 ~d~~G~e~~~l~v~Dl~tg~~l~-------------------------------------------~v~~h~lGt~~~~d  203 (365)
                      +|.+|+|+++|+|+|++||++++                                           +||+|+||+++++|
T Consensus       143 ~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d  222 (430)
T d1qfma1         143 LSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED  222 (430)
T ss_dssp             EEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred             eccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccc
Confidence            99999999999999999998765                                           69999999999999


Q ss_pred             ccEEeeCCCC-eEEEEEEcCCCcEEEEEeCCCcc--eEEEEEeCCC-----------c----------eeecC-c-----
Q 040506          204 APIFTEGDSG-FCVDITSTKDGKFITVNSNSRAS--SEEGLCDRCD-----------Q----------SISEN-E-----  253 (365)
Q Consensus       204 ~lvf~e~d~~-~~~~~~~s~d~~~l~i~~~~~~t--sev~~~d~~~-----------~----------~~~~~-~-----  253 (365)
                      ++||++++.. |++++..|+|++|++|.++++++  +++|+++...           .          +++.+ +     
T Consensus       223 ~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (430)
T d1qfma1         223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTF  302 (430)
T ss_dssp             EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEE
T ss_pred             ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeec
Confidence            9999998754 67788899999999999888764  6788887321           1          11221 1     


Q ss_pred             --cccCCcEEEEEEecCcCCCCCceEEeCCCCC-ceEeEEEEeCCEEEEEEecCCeeeEEEEeCCccccccccchhcCCC
Q 040506          254 --ECSSGDYYLARCRAEKLYSANWQNIILPGED-ISLQDMDIFDGHLVLFVSKKGVPMLCSIDLSINFECKYQMEIENLN  330 (365)
Q Consensus       254 --~~~~~~~~l~~~~~~~~~~~~w~~vi~~~~~-~~l~~v~~~~~~lvl~~~~~g~~~l~v~~l~~~~~~~~~~~~~~~~  330 (365)
                        +.++++|+|+++++.+++..+|++|||+.+. ..+..+.+++++||+.+++||.++|+++++.++.       +    
T Consensus       303 ~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~-------~----  371 (430)
T d1qfma1         303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-------L----  371 (430)
T ss_dssp             EECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-------E----
T ss_pred             ccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCc-------E----
Confidence              3467889999999998888899999998665 4556777889999999999999999999997653       2    


Q ss_pred             ccccCCCCCeeeeecCCCCCCCCCEEEEEEeccCC
Q 040506          331 PWFFPLPSSSCSIVPGSNHDFMSSVYRAVLSSPVV  365 (365)
Q Consensus       331 ~~~i~~p~~~~~~~~~~~~~~~s~~~~~~~sS~~~  365 (365)
                       ..+.+|..+++..+  +.+++++.++|+|+||++
T Consensus       372 -~~~~~~~~~sv~~~--~~~~~~~~~~~~~ss~~t  403 (430)
T d1qfma1         372 -LKIFPLEVGSVVGY--SGQKKDTEIFYQFTSFLS  403 (430)
T ss_dssp             -EEEECCCSSEEEEE--ECCTTCSEEEEEEECSSC
T ss_pred             -EEecCCCCceEeec--cCCCCCCEEEEEEcCCCC
Confidence             34555555534433  336789999999999986
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure