Citrus Sinensis ID: 040519

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLITTSFLK
Secondary Structure (PSIPRED)
cHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
wsliagrlpgstnykiKNYWNTHIKQKLLnhgldpqthrplnqihnhnnfnkytinnneeimhsSTHYQENLDLRAIHWTcyndnsrnnrTTLLITTSFLK
Flexible Loop (DISEMBL)
wsliagrlpgstnyKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCyndnsrnnrttllittsflk
Low Complexity Region (SEG)
WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLITTSFLK
Disordered region (IsUnstruct)
*******LPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLIT*****
Disordered Region (DISOPRED)
WSL*A**LPGSTNYKIKNYWNTHIKQ*******************************************************************LITTSFLK
Disordered Region (DISEMBL)
WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLITTSFLK
Disordered Region (DISPRO)
WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRP*************************************************RTTLLITTS*LK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLITTSFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q38851	236	Transcription repressor M	yes	no	0.980	0.419	0.401	2e-14
Q9SZP1	282	Transcription repressor M	no	no	0.425	0.152	0.674	3e-13
Q38850	249	Transcription repressor M	no	no	0.415	0.168	0.690	5e-13
O49608	274	Transcription factor MYB3	no	no	0.425	0.156	0.697	8e-13
P81395	274	Myb-related protein 330 O	N/A	no	0.415	0.153	0.738	2e-12
P81393	232	Myb-related protein 308 O	N/A	no	0.415	0.181	0.714	2e-12
P20026	267	Myb-related protein Hv1 O	N/A	no	0.495	0.187	0.62	2e-12
Q9S9K9	257	Transcription factor MYB3	no	no	0.425	0.167	0.697	2e-12
P20025	255	Myb-related protein Zm38	N/A	no	0.405	0.160	0.682	5e-12
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.673	0.231	0.470	7e-11

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 18/117 (15%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ---------IHNHNNFN 51
           WSLIAGRLPG T+ +IKNYWNTHIK+KLL+HG+DPQTHR +N+         +   N+  
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESKTVSSQVVVPIQNDAV 148

Query: 52  KYTIN---------NNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNNRTTLLITTSF 99
           +Y+ +         N+ +   S++    + DLR      Y+DNS + +  L +T  F
Sbjct: 149 EYSFSNLAVKPKTENSSDNGASTSGTTTDEDLRQNGECYYSDNSGHIKLNLDLTLGF 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 38/43 (88%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
           WSLIAGRLPG T+ +IKNYWNTHI++KL+N G+DP +HRP+ +
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE 131

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 38/42 (90%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLN 42
           WSLIAGR+PG T+ +IKNYWNTH+++KLL  G+DPQTH+PL+
Sbjct: 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
           WSLIA RLPG T+ +IKNYWNTH+K+KLL  G+DP THRP+N+
Sbjct: 89  WSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINE 131

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 37/42 (88%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLN 42
           WSLIAG LPG T+ +IKNYWNTHIK+KL++ G+DPQTHR LN
Sbjct: 89  WSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLN 130

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLN 42
           WSLIAGRLPG T+ +IKNYWNTHI++KLL+ G+DP THR +N
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIN 130

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 39/50 (78%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNF 50
           WSLIAGRLPG T+ +IKNYWNTHI++KL + G+DP THR +N  H  +N 
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVTHRAINSDHAASNI 138

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
           WSLIAGRLPG T+ +IKNYWNTHIK+KLL+ G+DP +HR +N+
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINE 131

Arabidopsis thaliana (taxid: 3702)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPL 41
           WSLIA RLPG T+ +IKNYWNTH+++KLL  G+DP THRP+
Sbjct: 89  WSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPI 129

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEE 60
           WS IA RLPG T+ +IKN+WNTHIK+KLL  G+DP TH PL +  N ++      + N+E
Sbjct: 89  WSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKKEANLSDQPTTESDQNKE 148

Query: 61  IMHSSTHY 68
             H     
Sbjct: 149 NGHQQVQV 156

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
168828717	229	R2R3-Myb5 transcription factor [Pinus pi	0.613	0.270	0.645	2e-15
147744710	257	R2R3-MYB transcription factor MYB5 [Pice	0.475	0.186	0.770	3e-15
223674391	219	R2R3-MYB transcription factor MYB5, part	0.475	0.219	0.791	3e-15
297809121	236	ATMYB6 [Arabidopsis lyrata subsp. lyrata	0.970	0.415	0.432	6e-15
23476279	294	myb-like transcription factor 1 [Gossypi	0.534	0.183	0.685	2e-14
23476285	263	myb-like transcription factor 1 [Gossypi	0.534	0.205	0.685	2e-14
23476281	268	myb-like transcription factor 1 [Gossypi	0.534	0.201	0.685	2e-14
223674383	196	R2R3-MYB transcription factor MYB19, par	0.495	0.255	0.72	2e-14
23476283	265	myb-like transcription factor 1 [Gossypi	0.534	0.203	0.685	2e-14
223674381	209	R2R3-MYB transcription factor MYB18, par	0.495	0.239	0.72	2e-14

>gi|168828717|gb|ACA33845.1| R2R3-Myb5 transcription factor [Pinus pinaster]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 45/62 (72%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEE 60
           WSLIAGRLPG T+ +IKNYWNTHIK+KLLN GLDPQ+HRPL Q HN N           E
Sbjct: 63  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSNTICPSVPALEHE 122

Query: 61  IM 62
           I+
Sbjct: 123 IL 124

Source: Pinus pinaster

Species: Pinus pinaster

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147744710|gb|ABQ51221.1| R2R3-MYB transcription factor MYB5 [Picea glauca]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHN 48
           WSLIAGRLPG T+ +IKNYWNTHIK+KLLN GLDPQ+HRPL Q+H+ N
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNKGLDPQSHRPLGQVHSSN 136

Source: Picea glauca

Species: Picea glauca

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223674391|gb|ACN12960.1| R2R3-MYB transcription factor MYB5, partial [Pinus taeda]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHN 48
           WSLIAGRLPG T+ +IKNYWNTHIK+KLLN GLDPQ+HRPL Q HN N
Sbjct: 53  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSN 100

Source: Pinus taeda

Species: Pinus taeda

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809121|ref|XP_002872444.1| ATMYB6 [Arabidopsis lyrata subsp. lyrata] gi|297318281|gb|EFH48703.1| ATMYB6 [Arabidopsis lyrata subsp. lyrata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 20/118 (16%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ---------IHNHNNFN 51
           WSLIAGRLPG T+ +IKNYWNTHIK+KLL+HG+DPQTHRP+N          + + N+  
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRPINDSKTVPFQTVVPSQNDAV 148

Query: 52  KYTIN---------NNEEIMHSSTHYQENLDLRAIHWTCYN-DNSRNNRTTLLITTSF 99
           +Y+ +         N+ +   S++    + DLR  +  CYN DNSR     L +T  F
Sbjct: 149 EYSFSNLAVKLKTENSSDNGASTSGTTTDEDLRQ-NGECYNSDNSRKIELNLDLTLGF 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23476279|gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYT 54
           WSLIAGRLPG T+ +IKNYWNTHIK+KL++ G+DPQTHRPLNQ  N N     T
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNQTANTNTVTAPT 142

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23476285|gb|AAN28273.1| myb-like transcription factor 1 [Gossypioides kirkii]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYT 54
           WSLIAGRLPG T+ +IKNYWNTHIK+KL++ G+DPQTHRPLNQ  N N     T
Sbjct: 74  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNQTANTNTVTAPT 127

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23476281|gb|AAN28271.1| myb-like transcription factor 1 [Gossypium raimondii]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYT 54
           WSLIAGRLPG T+ +IKNYWNTHIK+KL++ G+DPQTHRPLNQ  N N     T
Sbjct: 75  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNQTANTNTVTAPT 128

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223674383|gb|ACN12956.1| R2R3-MYB transcription factor MYB19, partial [Picea glauca]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNF 50
           WSLIAGRLPG T+ +IKNYWNTHIK+KLL+ G+DPQ+HRPL Q +N NN 
Sbjct: 53  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGIDPQSHRPLGQPYNSNNI 102

Source: Picea glauca

Species: Picea glauca

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23476283|gb|AAN28272.1| myb-like transcription factor 1 [Gossypium herbaceum]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYT 54
           WSLIAGRLPG T+ +IKNYWNTHIK+KL++ G+DPQTHRPLNQ  N N     T
Sbjct: 72  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQTHRPLNQTANTNTVTAPT 125

Source: Gossypium herbaceum

Species: Gossypium herbaceum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223674381|gb|ACN12955.1| R2R3-MYB transcription factor MYB18, partial [Picea glauca]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNF 50
           WSLIAGRLPG T+ +IKNYWNTHIK+KLL+ G+DPQ+HRPL Q +N NN 
Sbjct: 53  WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGIDPQSHRPLGQPYNSNNI 102

Source: Picea glauca

Species: Picea glauca

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.425	0.182	0.767	5.5e-18
TAIR|locus:2092820	249	MYB5 "myb domain protein 5" [A	0.445	0.180	0.680	1.4e-14
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.425	0.152	0.674	7.1e-14
TAIR|locus:2132584	266	MYB85 "myb domain protein 85"	0.584	0.221	0.583	7.9e-14
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.425	0.156	0.697	7.9e-14
TAIR|locus:2009452	257	MYB3 "myb domain protein 3" [A	0.425	0.167	0.697	1.3e-13
TAIR|locus:2205283	282	MYB20 "myb domain protein 20"	0.574	0.205	0.482	2.2e-13
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.871	0.274	0.404	2.5e-13
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.425	0.159	0.697	2.7e-13
TAIR|locus:1005716764	212	HOS10 "high response to osmoti	0.376	0.179	0.763	4.4e-13

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
             WSLIAGRLPG T+ +IKNYWNTHIK+KLL+HG+DPQTHR +N+
Sbjct:    89 WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPL--NQIH 45
             WSLIAGR+PG T+ +IKNYWNTH+++KLL  G+DPQTH+PL  N IH
Sbjct:   100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIH 146

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0009845 "seed germination" evidence=NAS

GO:0010026 "trichome differentiation" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 7.1e-14, P = 7.1e-14
 Identities = 29/43 (67%), Positives = 38/43 (88%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
             WSLIAGRLPG T+ +IKNYWNTHI++KL+N G+DP +HRP+ +
Sbjct:    89 WSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQE 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2132584 MYB85 "myb domain protein 85" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEE 60
             WS IA RLPG T+ +IKN+WNTHIK+KLL  G+DP TH+PLNQ    N  N  TI +N +
Sbjct:    89 WSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPMTHQPLNQ-EPSNIDNSKTIPSNPD 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
             WSLIA RLPG T+ +IKNYWNTH+K+KLL  G+DP THRP+N+
Sbjct:    89 WSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 30/43 (69%), Positives = 38/43 (88%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
             WSLIAGRLPG T+ +IKNYWNTHIK+KLL+ G+DP +HR +N+
Sbjct:    89 WSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0009800 "cinnamic acid biosynthetic process" evidence=TAS

GO:0009892 "negative regulation of metabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2205283 MYB20 "myb domain protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNN 58
             WS IA  LPG T+ +IKN+WNTHIK+KL   G+DP TH+PL+ +   +      + NN
Sbjct:    89 WSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSIVEKEDEEPLKKLQNN 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
 Identities = 40/99 (40%), Positives = 57/99 (57%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRP----LN------QIHNHNNF 50
             WS IAG LPG T+ +IKNYWNTHI++KL+  G+DP THRP    LN      Q+    NF
Sbjct:    89 WSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGIDPVTHRPRTDHLNVLAALPQLLAAANF 148

Query:    51 NKYTINNNEEIMHSSTHYQENLDLRAIHWTCYNDNSRNN 89
             N   +N N+ I   +T   +   L ++     N+N+ ++
Sbjct:   149 NNL-LNLNQNIQLDATSVAKAQLLHSMIQVLSNNNTSSS 186

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQ 43
             WSLIA RLPG T+ +IKNYWNTHIK+KLL+ G+DP THR +N+
Sbjct:    89 WSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGIDPATHRGINE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:1005716764 HOS10 "high response to osmotic stress 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 29/38 (76%), Positives = 35/38 (92%)

Query:     1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTH 38
             WSLIAG+LPG T+ +IKNYWNTHIK+KLLN G+DP+TH
Sbjct:    89 WSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRGIDPKTH 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009631 "cold acclimation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.6__2929__AT4G09460.1 annotation not avaliable (236 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	5e-18
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	5e-12

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 75.5 bits (185), Expect = 5e-18
 Identities = 32/47 (68%), Positives = 40/47 (85%), Gaps = 2/47 (4%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPL--NQIH 45
           WSLIAGR+PG T+ +IKNYWNTH+++KLL  G+DPQTH+PL  N IH
Sbjct: 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIH 146

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 60.0 bits (145), Expect = 5e-12
 Identities = 26/60 (43%), Positives = 42/60 (70%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYTINNNEE 60
           WS IA +LPG T+ +IKN WN+ +K+KL   G+DP TH+PL+++ N  + N  T + +++
Sbjct: 89  WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDDKSDK 148

Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.38
PLN03212	249	Transcription repressor MYB5; Provisional	99.02
PLN03091	459	hypothetical protein; Provisional	98.95
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.41
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	97.18
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.14
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	96.39
PLN03212	249	Transcription repressor MYB5; Provisional	91.16

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.38  E-value=2.8e-13  Score=103.58  Aligned_cols=40  Identities=70%  Similarity=1.297  Sum_probs=36.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRP   40 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p   40 (101)
                      |++||++|||||||+||||||+++|||+.+.+.++.+..+
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~  123 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRP  123 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999999999998877776444

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.02  E-value=3e-10  Score=89.18  Aligned_cols=44  Identities=66%  Similarity=1.292  Sum_probs=41.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQI   44 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p~~~~   44 (101)
                      |+.||++|||||||.|||||++++++++...++++.+++|....
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~  143 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDAN  143 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCcc
Confidence            99999999999999999999999999999999999999987653

>PLN03091 hypothetical protein; Provisional

Probab=98.95  E-value=1e-09  Score=91.97  Aligned_cols=47  Identities=51%  Similarity=1.009  Sum_probs=44.0

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNH   47 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~~~p~~~~~~~   47 (101)
                      |++||++||||||+.|||||+..+||+++..++++.+|+|.......
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~  135 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENG  135 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999876544

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=97.41  E-value=5.4e-05  Score=42.42  Aligned_cols=25  Identities=40%  Similarity=0.804  Sum_probs=22.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |..||..||+||+.+|+++|...++
T Consensus        24 w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717       24 WEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            8899999999999999999997543

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=97.18  E-value=0.00019  Score=39.68  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=21.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~   23 (101)
                      |..||..+|+||..+|+++|+..
T Consensus        22 w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167          22 WEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             HHHHHhHcCCCCHHHHHHHHHHh
Confidence            88999999999999999999864

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.14  E-value=0.00012  Score=43.10  Aligned_cols=23  Identities=30%  Similarity=0.648  Sum_probs=21.6

Q ss_pred             ChhhhCcCC-CCChhHHHHHHHHH
Q 040519            1 WSLIAGRLP-GSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~Lp-GRTdN~VKN~wn~~   23 (101)
                      |..||.+|| |||...+++||..+
T Consensus        24 W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen   24 WKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             HHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHhh
Confidence            889999999 99999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=96.39  E-value=0.00079  Score=40.77  Aligned_cols=25  Identities=32%  Similarity=0.695  Sum_probs=21.1

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |..||.+|+.||..+|++||...|+
T Consensus        20 W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen   20 WKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             HHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            8899999966999999999998553

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=91.16  E-value=0.11  Score=41.37  Aligned_cols=29  Identities=10%  Similarity=0.239  Sum_probs=25.1

Q ss_pred             ChhhhCcC-CCCChhHHHHHHHHHHHHHHH
Q 040519            1 WSLIAGRL-PGSTNYKIKNYWNTHIKQKLL   29 (101)
Q Consensus         1 Ws~IA~~L-pGRTdN~VKN~wn~~l~kk~~   29 (101)
                      |..||+++ +|||+...+.||..+|+-.+.
T Consensus        48 W~~IAk~~g~gRT~KQCReRW~N~L~P~I~   77 (249)
T PLN03212         48 WRSLPKRAGLLRCGKSCRLRWMNYLRPSVK   77 (249)
T ss_pred             HHHHHHhhhcCCCcchHHHHHHHhhchhcc
Confidence            89999998 799999999999988765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-10
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-09
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-08
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	7e-08
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-05
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-05

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 53.5 bits (129), Expect = 1e-10
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHN 46
           WS+IA  +PG T+  IKN WN+ I +++  +    +   P      
Sbjct: 76  WSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKR 121

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 13/28 (46%), Positives = 21/28 (75%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
           W+ IA  LPG T+  IKN+WN+ +++K+
Sbjct: 78  WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 46.5 bits (111), Expect = 4e-08
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHN 48
           W++IA   PG T+  IKN W T   +  +     PQT + L   H+H+
Sbjct: 84  WAIIAKFFPGRTDIHIKNRWVTISNKLGI-----PQTQQMLEHHHHHH 126

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 46.0 bits (110), Expect = 7e-08
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
           W+ IA  LPG T+  +KN+WN+ +++K+
Sbjct: 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 13/28 (46%), Positives = 21/28 (75%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
           W+ IA  LPG T+  IKN+WN+ +++K+
Sbjct: 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 1   WSLIAGRLPGSTNYKIKNYWNTHIKQKL 28
           W+ I+  L   ++  I+N W    + + 
Sbjct: 75  WNKISKFLKNRSDNNIRNRWMMIARHRA 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.7
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.27
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.27
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.25
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.55
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.11
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.07
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.04
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	97.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.96
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.9
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.86
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.85
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.77
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	97.7
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.54
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	97.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.21
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.14
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	97.07
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	96.99
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	96.92
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.9
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	96.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.73
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.7
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	96.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	96.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	96.13
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	96.0
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.65
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	95.19
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	94.9
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	94.66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	93.59
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	93.48
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	92.04
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	91.61
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	87.64

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.70  E-value=4.5e-09  Score=66.42  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCCCCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQT   37 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~~~~~   37 (101)
                      |..||++|||||++.|||||+.++++++.. |.++..
T Consensus        31 W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~   66 (72)
T 2cu7_A           31 WTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET   66 (72)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence            899999999999999999999999888665 666543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.27  E-value=9.8e-08  Score=73.90  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=27.1

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL   29 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~   29 (101)
                      |..||++|||||+|.|||||+.+|++++.
T Consensus        36 W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A           36 YDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             HHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            89999999999999999999999998754

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.27  E-value=1.8e-07  Score=64.48  Aligned_cols=31  Identities=42%  Similarity=0.862  Sum_probs=28.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNH   31 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~   31 (101)
                      |+.||++|||||++.|||||+.++++++...
T Consensus        76 W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~  106 (131)
T 3zqc_A           76 WSVIAKLIPGRTDNAIKNRWNSSISKRISTN  106 (131)
T ss_dssp             HHHHTTTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            8999999999999999999999998886544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=3.3e-07  Score=56.66  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=28.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGL   33 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~~~   33 (101)
                      |+.||. |||||++.+|+||+.++++.+.....
T Consensus        31 W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A           31 WRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             HHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            899999 99999999999999999988776543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=62.10  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLL   29 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~   29 (101)
                      |+.||.+|||||++.|||||+.++++.-.
T Consensus        38 W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A           38 WSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            99999999999999999999998887543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.11  E-value=1.2e-06  Score=60.10  Aligned_cols=27  Identities=41%  Similarity=0.749  Sum_probs=24.9

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQK   27 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk   27 (101)
                      |+.||++|||||+++|||||+.++++.
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            899999999999999999999977664

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.07  E-value=1.3e-06  Score=51.37  Aligned_cols=25  Identities=28%  Similarity=0.725  Sum_probs=23.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |+.||.+|||||+..+++||+.+|.
T Consensus        26 W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A           26 WKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            8999999999999999999998763

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.07  E-value=1.6e-06  Score=57.97  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=28.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHH-HHhCCCCC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQK-LLNHGLDP   35 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk-~~~~~~~~   35 (101)
                      |.+||.+|||||+++|++||+.+++.. ....|..|
T Consensus        34 W~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp   69 (93)
T 2cjj_A           34 WANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP   69 (93)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            899999999999999999999877654 33455544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.04  E-value=1.4e-06  Score=55.90  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |.+||.+|||||+++|++||+.++
T Consensus        44 W~~IA~~vpGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           44 WDKIARCVPSKSKEDCIARYKLLV   67 (73)
T ss_dssp             HHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            899999999999999999999754

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=97.96  E-value=2e-06  Score=50.70  Aligned_cols=24  Identities=33%  Similarity=0.812  Sum_probs=22.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |+.||.+|||||+..+++||+.+|
T Consensus        26 W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A           26 WSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHc
Confidence            899999999999999999999765

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=1.4e-06  Score=54.95  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL   28 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~   28 (101)
                      |.+||.+|||||+..+++||+.++++.+
T Consensus        36 W~~IA~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A           36 WQKIADELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999988887654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.90  E-value=1.8e-06  Score=52.25  Aligned_cols=25  Identities=20%  Similarity=0.612  Sum_probs=23.1

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |+.||.+|||||+..+++||+.+|+
T Consensus        31 W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A           31 WKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHcC
Confidence            8999999999999999999998654

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.86  E-value=2.3e-06  Score=54.97  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNT   22 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~   22 (101)
                      |+.||++| |||+++|||||+.
T Consensus        45 W~~IA~~l-gRt~~q~knRw~~   65 (73)
T 2llk_A           45 WATIGAAL-GRSASSVKDRCRL   65 (73)
T ss_dssp             HHHHHHHH-TSCHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCHHHHHHHHHH
Confidence            89999999 9999999999996

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.85  E-value=2.7e-06  Score=52.95  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             ChhhhCcCC--CCChhHHHHHHHHHHHHHHHh
Q 040519            1 WSLIAGRLP--GSTNYKIKNYWNTHIKQKLLN   30 (101)
Q Consensus         1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~kk~~~   30 (101)
                      |+.||.+||  |||+..+++||+.+++..+.+
T Consensus        33 W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A           33 WSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             HHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            899999999  999999999999988776443

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.77  E-value=4.7e-06  Score=49.43  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             ChhhhCcCC--CCChhHHHHHHHHHHHH
Q 040519            1 WSLIAGRLP--GSTNYKIKNYWNTHIKQ   26 (101)
Q Consensus         1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~k   26 (101)
                      |+.||.+||  |||+..+++||..++|.
T Consensus        25 W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A           25 WSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             HHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            899999999  99999999999988764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.70  E-value=6e-06  Score=50.26  Aligned_cols=25  Identities=12%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |..||++|||||+..+++||+.++.
T Consensus        31 W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A           31 WQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            8999999999999999999997653

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.54  E-value=3.7e-05  Score=50.32  Aligned_cols=28  Identities=21%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519            1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL   28 (101)
Q Consensus         1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~   28 (101)
                      |+.|++.    |+|||++.+|++|..++++..
T Consensus        23 W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A           23 WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             HHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            8899985    999999999999999887664

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=1.7e-05  Score=49.32  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQ   26 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~k   26 (101)
                      |..||.+|||||+..+++||+.+|+.
T Consensus        32 W~~Ia~~l~~Rt~~qcr~Rw~~~L~p   57 (70)
T 2dim_A           32 WSRIASLLHRKSAKQCKARWYEWLDP   57 (70)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHTSCS
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHcCC
Confidence            89999999999999999999986653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.21  E-value=6.2e-05  Score=45.55  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             ChhhhCcCC-CCChhHHHHHHHHH
Q 040519            1 WSLIAGRLP-GSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~Lp-GRTdN~VKN~wn~~   23 (101)
                      |..||++|| |||+..+++||..+
T Consensus        32 W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A           32 WADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH
Confidence            899999999 99999999999864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.14  E-value=0.00016  Score=44.85  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             ChhhhCcCC--CCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLP--GSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~Lp--GRTdN~VKN~wn~~l~   25 (101)
                      |+.||+++|  |||+..+++||..+++
T Consensus        34 W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           34 WAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            899999866  9999999999988654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=97.07  E-value=0.00036  Score=48.66  Aligned_cols=28  Identities=21%  Similarity=0.404  Sum_probs=25.0

Q ss_pred             ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519            1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL   28 (101)
Q Consensus         1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~   28 (101)
                      |+.|+..    |+|||++++|++|..+++...
T Consensus        40 W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           40 WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             HHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            8999997    599999999999999888754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=96.99  E-value=0.00023  Score=44.79  Aligned_cols=26  Identities=15%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             Chhhh---CcCCCCChhHHHHHHHHHHHH
Q 040519            1 WSLIA---GRLPGSTNYKIKNYWNTHIKQ   26 (101)
Q Consensus         1 Ws~IA---~~LpGRTdN~VKN~wn~~l~k   26 (101)
                      |+.|+   .+|+|||+-+||++|..++|+
T Consensus        30 W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A           30 WNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             HHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            89999   789999999999999986654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=96.92  E-value=0.0002  Score=50.28  Aligned_cols=24  Identities=33%  Similarity=0.812  Sum_probs=22.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |+.||.+|||||++.+++||..++
T Consensus        81 W~~Ia~~l~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           81 WSVIAKHLKGRIGKQCRERWHNHL  104 (159)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHh
Confidence            899999999999999999998765

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.90  E-value=0.00043  Score=47.14  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             ChhhhCcC----CCCChhHHHHHHHHHHHHH
Q 040519            1 WSLIAGRL----PGSTNYKIKNYWNTHIKQK   27 (101)
Q Consensus         1 Ws~IA~~L----pGRTdN~VKN~wn~~l~kk   27 (101)
                      |+.|+..+    +|||++++|++|..++++.
T Consensus        36 W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A           36 WRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             HHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            89999965    9999999999999977754

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.82  E-value=0.00014  Score=46.34  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=22.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQ   26 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~k   26 (101)
                      |.+||.+| |||..+|++||+.+.+.
T Consensus        34 W~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A           34 WEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             HHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            89999997 99999999999986554

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.73  E-value=0.0003  Score=47.88  Aligned_cols=24  Identities=33%  Similarity=0.732  Sum_probs=22.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..+++||..++
T Consensus        50 W~~Ia~~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           50 WSDIAKHLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhc
Confidence            899999999999999999998754

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.70  E-value=0.00047  Score=45.20  Aligned_cols=24  Identities=33%  Similarity=0.812  Sum_probs=22.2

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..++.||..++
T Consensus        27 W~~Ia~~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A           27 WSVIAKHLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHhhhhcCCCHHHHHHHHHhcc
Confidence            889999999999999999998754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.40  E-value=0.00066  Score=41.37  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.7

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||..+|.++|....
T Consensus        34 w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           34 FGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhc
Confidence            789999999999999999998743

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=96.30  E-value=0.0007  Score=43.57  Aligned_cols=22  Identities=9%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             ChhhhCcCCCCChhHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNT   22 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~   22 (101)
                      |..||++++|||+..+++||..
T Consensus        40 W~~IA~~v~~RT~~qcr~r~~~   61 (79)
T 2yus_A           40 WNKVSEHVGSRTQDECILHFLR   61 (79)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHH
Confidence            8999999999999999999975

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=96.13  E-value=0.0017  Score=44.17  Aligned_cols=24  Identities=21%  Similarity=0.717  Sum_probs=22.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..++.||..++
T Consensus        33 W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A           33 WKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHhhhc
Confidence            899999999999999999999765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.08  E-value=0.0029  Score=43.18  Aligned_cols=24  Identities=25%  Similarity=0.655  Sum_probs=22.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..++.||..++
T Consensus        25 W~~Ia~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A           25 WPRITSFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             GGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCHHHHHHHHhhcc
Confidence            899999999999999999998765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.04  E-value=0.0032  Score=43.85  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             ChhhhCc----CCCCChhHHHHHHHHHHHHHH
Q 040519            1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKL   28 (101)
Q Consensus         1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~   28 (101)
                      |+.|+..    |+|||+..+|++|..+++...
T Consensus        54 W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           54 WRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             HHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            8899986    499999999999999887763

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=96.00  E-value=0.0017  Score=42.98  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..++.||..+|
T Consensus        24 W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A           24 WIRISQLMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred             HHHHhhhcCCCCHHHHHHHHHHHH
Confidence            889999999999999999998754

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=95.65  E-value=0.0071  Score=40.42  Aligned_cols=32  Identities=9%  Similarity=0.060  Sum_probs=27.9

Q ss_pred             ChhhhCcC-----CCCChhHHHHHHHHHHHHHHHhCC
Q 040519            1 WSLIAGRL-----PGSTNYKIKNYWNTHIKQKLLNHG   32 (101)
Q Consensus         1 Ws~IA~~L-----pGRTdN~VKN~wn~~l~kk~~~~~   32 (101)
                      |..|+.++     ++||..+||+||...+++.+..++
T Consensus        52 W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           52 FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            78999999     599999999999998888777664

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=95.19  E-value=0.0023  Score=49.18  Aligned_cols=26  Identities=12%  Similarity=0.308  Sum_probs=23.7

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQ   26 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~k   26 (101)
                      |..||+.++|||++.||++|+.+.++
T Consensus       155 W~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          155 FQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999976655

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.90  E-value=0.016  Score=37.14  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~   23 (101)
                      |..||.++||||..+|+.||..+
T Consensus        34 We~IA~~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A           34 WSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHH
Confidence            88999999999999999998864

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=94.66  E-value=0.011  Score=45.73  Aligned_cols=27  Identities=7%  Similarity=0.110  Sum_probs=24.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQK   27 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk   27 (101)
                      |.+||+.+|+||++.+|+||...+++.
T Consensus       174 fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          174 FKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence            789999999999999999999877664

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=93.59  E-value=0.011  Score=41.25  Aligned_cols=24  Identities=29%  Similarity=0.744  Sum_probs=8.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..++.||..++
T Consensus        29 W~~Ia~~l~~Rt~~qcr~Rw~~~l   52 (159)
T 1h89_C           29 WKVIANYLPNRTDVQCQHRWQKVL   52 (159)
T ss_dssp             --------------CHHHHHHTTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHcc
Confidence            899999999999999999998654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=93.48  E-value=0.02  Score=37.00  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNT   22 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~   22 (101)
                      |.+||..+||||..+|+.++..
T Consensus        46 WekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           46 WKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             STTTGGGSCSSCHHHHHGGGC-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHH
Confidence            8999999999999999998753

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=92.04  E-value=0.019  Score=36.82  Aligned_cols=24  Identities=13%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |..||..| ||+.+.|+||+..+|+
T Consensus        39 fa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           39 FAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            78899999 9999999999987553

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=91.61  E-value=0.054  Score=36.49  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=22.1

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |+.||+.|-+|+.|.|+||+..+|+
T Consensus        58 Fa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           58 FSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5779999999999999999998654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=87.64  E-value=0.1  Score=35.01  Aligned_cols=22  Identities=9%  Similarity=0.379  Sum_probs=0.4

Q ss_pred             hhCcCCCCChhHHHHHHHHHHH
Q 040519            4 IAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         4 IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      ||..|||||+...+.||..++.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~   22 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLN   22 (128)
T ss_dssp             ---------------------C
T ss_pred             CccccCCCCHHHHHHHHHHhhC
Confidence            8999999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-04

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (76), Expect = 7e-04
 Identities = 6/54 (11%), Positives = 20/54 (37%)

Query: 1  WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNHGLDPQTHRPLNQIHNHNNFNKYT 54
          +  I+  +P  T   I++ +  ++ ++L       +  + +     +    K  
Sbjct: 29 YDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVL 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.73
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.09
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.9
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.89
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.84
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.74
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.7
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.31
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.02
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.96
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	96.82
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	96.79
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	96.79
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.48
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	81.48

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.1e-09  Score=63.62  Aligned_cols=25  Identities=48%  Similarity=0.929  Sum_probs=23.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |+.||.+|||||++.|||||+.++|
T Consensus        23 W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2          23 WAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             HHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             HHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            8999999999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=2.1e-07  Score=59.84  Aligned_cols=30  Identities=17%  Similarity=0.330  Sum_probs=27.4

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHh
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLN   30 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~   30 (101)
                      |+.||.+|||||++.+++||+.+|...+..
T Consensus        29 W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1          29 YDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             HHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            899999999999999999999988887644

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=1.9e-06  Score=49.68  Aligned_cols=24  Identities=29%  Similarity=0.744  Sum_probs=22.7

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||+..+++||+.+|
T Consensus        24 W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_          24 WKVIANYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             HHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHhhC
Confidence            899999999999999999999876

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=1.5e-06  Score=50.70  Aligned_cols=24  Identities=33%  Similarity=0.812  Sum_probs=22.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |+.||++|||||+..+++||+.+|
T Consensus        26 W~~Ia~~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_          26 WSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHHhhC
Confidence            899999999999999999999765

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2e-06  Score=51.39  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=25.5

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKL   28 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~   28 (101)
                      |..||.+|||||+..|++||+..+++..
T Consensus        24 W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1          24 WTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998887654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.74  E-value=5.1e-06  Score=49.79  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~   25 (101)
                      |.+||.+|||||++.+++||+.+++
T Consensus        27 W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1          27 WANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999976544

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=7.9e-06  Score=53.72  Aligned_cols=31  Identities=13%  Similarity=0.180  Sum_probs=26.7

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHHHHHHHhC
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHIKQKLLNH   31 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l~kk~~~~   31 (101)
                      |+.||++|+||++++|+|||..+|+-.....
T Consensus        58 w~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~~   88 (95)
T d1ug2a_          58 FSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999877664443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=4.5e-05  Score=44.97  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=20.8

Q ss_pred             ChhhhCcCCCCChhHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNT   22 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~   22 (101)
                      |..||.+|||||+..+++||..
T Consensus        38 W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          38 WDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             HHHHGGGCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHH
Confidence            8999999999999999999975

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=6.4e-05  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=21.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~   23 (101)
                      |..||.+|||||..+|+++|...
T Consensus        39 w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          39 FGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             SSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHH
Confidence            89999999999999999999753

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=8.2e-05  Score=42.20  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTH   23 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~   23 (101)
                      |..||.+|+|||+..+++||..+
T Consensus        24 W~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1          24 WQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHh
Confidence            88999999999999999999753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00021  Score=41.48  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=21.8

Q ss_pred             ChhhhCc--CCCCChhHHHHHHHHHHH
Q 040519            1 WSLIAGR--LPGSTNYKIKNYWNTHIK   25 (101)
Q Consensus         1 Ws~IA~~--LpGRTdN~VKN~wn~~l~   25 (101)
                      |..||..  |+|||+..+++||..+++
T Consensus        25 W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_          25 WAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            8999987  679999999999987554

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=6.1e-05  Score=44.86  Aligned_cols=24  Identities=13%  Similarity=0.275  Sum_probs=21.9

Q ss_pred             ChhhhCcCCCCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~~l   24 (101)
                      |..||.+|||||...|+++|....
T Consensus        27 w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1          27 FQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            889999999999999999998644

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00018  Score=41.44  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             ChhhhCcCC--CCChhHHHHHHHHHH
Q 040519            1 WSLIAGRLP--GSTNYKIKNYWNTHI   24 (101)
Q Consensus         1 Ws~IA~~Lp--GRTdN~VKN~wn~~l   24 (101)
                      |+.||..+|  |||+..+++||..+.
T Consensus        25 W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_          25 WSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            889998754  999999999998743

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.48  E-value=0.00064  Score=42.31  Aligned_cols=30  Identities=20%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             ChhhhCc----CCCCChhHHHHHHHHHHHHHHHh
Q 040519            1 WSLIAGR----LPGSTNYKIKNYWNTHIKQKLLN   30 (101)
Q Consensus         1 Ws~IA~~----LpGRTdN~VKN~wn~~l~kk~~~   30 (101)
                      |..|++.    |+|||+..+|.||..+++.....
T Consensus        23 W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1          23 WRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             HHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            7889874    79999999999999988776543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.48  E-value=0.18  Score=29.38  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             ChhhhCcCCCCChhHHHHHHHH
Q 040519            1 WSLIAGRLPGSTNYKIKNYWNT   22 (101)
Q Consensus         1 Ws~IA~~LpGRTdN~VKN~wn~   22 (101)
                      |.+||.++ |||..+|..+...
T Consensus        27 W~~IA~~v-gkt~~ev~~~~k~   47 (59)
T d2cqqa1          27 WEKIAHEL-GRSVTDVTTKAKQ   47 (59)
T ss_dssp             HHHHHHHH-TSCHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHH
Confidence            88999999 9999999988754