Citrus Sinensis ID: 040521

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
RNIIKKHIYSMAFSSSSRAKLSGTSHISKDPDKISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
cccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc
ccHHHHHEHccHccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHccccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
RNIIKKHIYSMAfssssraklsgtshiskdpdkisktsrpnlieftpsptiyqkgcitsdntvassplkhfthttrhpsffehdIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIIsstcgghlhDLQEVALRFRLLRqegyyvpadmfnnfmikegrfsqfnvsEDIGRLMEVYEASqlsiageegldeAGQFSAKMLNECMTHLDhnqalaigntlrhpyhkslprfmakdvffgnfqGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDlglakklpfardqplngtfGLWLASQIQACqskewssqnpfpsstlLTTYLMFMGRLMNLFSSQKLlldgilpqwvnclst
rniikkhiysmafssssraklsgtshiskdpdkisktsrpnlieftpsptiyqkgCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKewssqnpfPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
RNIIKKHIYSMAFSSSSRAKLSGTSHISKDPDKISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
********************************************F**SPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSS*NPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCL**
******H***********************************************************PLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMT**DHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLS*
RNIIKKHIYSMAFS*******************ISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQA***********FPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
RNIIKKHIYSMAFSSSSRAKLSG******************************************SPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
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RNIIKKHIYSMAFSSSSRAKLSGTSHISKDPDKISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKLLLDGILPQWVNCLST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
P0CV96 580 (3S,6E)-nerolidol synthas N/A no 0.725 0.479 0.491 1e-65
P0CV95 578 (3S,6E)-nerolidol synthas N/A no 0.723 0.479 0.486 3e-65
P0CV94 519 (3S,6E)-nerolidol synthas N/A no 0.592 0.437 0.557 7e-63
Q84NC9 584 Tricyclene synthase 1e20, N/A no 0.741 0.486 0.354 8e-44
Q84ND0 581 Tricyclene synthase Oc15, N/A no 0.741 0.488 0.354 1e-43
Q84NC8 579 Tricyclene synthase 0e23, N/A no 0.762 0.504 0.355 2e-42
F6M8H5 562 Probable sesquiterpene sy N/A no 0.694 0.473 0.362 6e-41
F6M8H4 559 Probable sesquiterpene sy N/A no 0.681 0.466 0.365 3e-40
F6M8H7 562 Probable sesquiterpene sy N/A no 0.694 0.473 0.362 4e-40
E3W208 562 Sesquiterpene synthase OS N/A no 0.681 0.464 0.369 8e-39
>sp|P0CV96|NES1_FRAVE (3S,6E)-nerolidol synthase 1, chloroplastic OS=Fragaria vesca PE=1 SV=1 Back     alignment and function desciption
 Score =  250 bits (639), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/293 (49%), Positives = 192/293 (65%), Gaps = 15/293 (5%)

Query: 31  PDKISKTSRPNLIEFTPS---PTIYQKGCITSDNTVASS--PLKHFTHTTRHPSFFEHDI 85
           P  IS   + +L++ T     PT  ++G I  D+ + SS  P+K     T+H      DI
Sbjct: 18  PKSISHIGQSDLMQLTHKKQLPTFQRRG-IAEDSLLPSSTTPIKPMHVETKHTRTM-GDI 75

Query: 86  QVEHSRKLKDLKHIFSLVGG-NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTC 144
            V+HS+KL+  +++       ++ EGL MIDAVQRLGI+Y F+ EI+EIL +Q  I S C
Sbjct: 76  FVQHSQKLELFRNVLRNAAELDALEGLNMIDAVQRLGIDYHFQREIDEILHKQMGIVSAC 135

Query: 145 GGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQL 204
                DL EVALRFRLLRQ GY+VP D+FNNF   +G F Q  + EDI  LM +YEASQL
Sbjct: 136 D----DLYEVALRFRLLRQHGYFVPEDVFNNFKDSKGTFKQV-LGEDIKGLMSLYEASQL 190

Query: 205 SIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQ 264
              GE+ L EA +FS  +L   ++HLD ++A  +GNTLR+P+ KSL  FMA++ FF   Q
Sbjct: 191 GTEGEDTLVEAEKFSGHLLKTSLSHLDRHRARIVGNTLRNPHRKSLASFMARN-FFVTSQ 249

Query: 265 GERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPL 317
               W L++LKE+AK DFNMV ++H KEIVQ++KWWK+LGL K+L FARDQPL
Sbjct: 250 ATNSW-LNLLKEVAKTDFNMVRSVHQKEIVQISKWWKELGLVKELKFARDQPL 301
Involved in monoterpene (C10) and sesquiterpene (C15) biosynthesis. Converts geranyl diphosphate (GPP) into S-linalool and farnesyl diphosphate (FPP) into (3S)-E-nerolidol (By similarity). Probably not expressed in wild strawberry species.
Fragaria vesca (taxid: 57918)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 8
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial OS=Fragaria ananassa PE=1 SV=1 Back     alignment and function description
>sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1 Back     alignment and function description
>sp|Q84NC9|TPS3_ANTMA Tricyclene synthase 1e20, chloroplastic OS=Antirrhinum majus GN=1e20 PE=1 SV=1 Back     alignment and function description
>sp|Q84ND0|TPS2_ANTMA Tricyclene synthase Oc15, chloroplastic OS=Antirrhinum majus GN=Oc15 PE=1 SV=1 Back     alignment and function description
>sp|Q84NC8|TPS1_ANTMA Tricyclene synthase 0e23, chloroplastic OS=Antirrhinum majus GN=0e23 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
359496210 601 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.736 0.469 0.533 5e-81
359496214 612 PREDICTED: (3S,6E)-nerolidol synthase 1, 0.736 0.460 0.536 2e-80
296090623 573 unnamed protein product [Vitis vinifera] 0.736 0.492 0.536 2e-80
313755442 577 (3S)-linalool/(E)-nerolidol synthase [Vi 0.736 0.488 0.529 1e-79
374087946 577 (3S)-linalool/(E)-nerolidol synthase [Vi 0.736 0.488 0.526 1e-79
313755440 612 (3S)-linalool/(E)-nerolidol synthase [Vi 0.736 0.460 0.526 2e-79
296086971 490 unnamed protein product [Vitis vinifera] 0.733 0.573 0.533 3e-77
359496657 584 PREDICTED: (3S,6E)-nerolidol synthase 1, 0.733 0.481 0.533 3e-77
359496180 582 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.733 0.482 0.526 8e-76
359496613 584 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.733 0.481 0.522 2e-75
>gi|359496210|ref|XP_002270107.2| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 153/287 (53%), Positives = 214/287 (74%), Gaps = 5/287 (1%)

Query: 31  PDKISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHS 90
           P+K +   +       P PT  QK  I  D+T+A  PL+   H ++H SF + +  ++H+
Sbjct: 41  PNKFTXLGQSKFNSVVPVPTA-QKWSIAPDHTLAYKPLRKNNHQSQHLSFTD-EFYIKHA 98

Query: 91  RKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHD 150
           ++L +++++FS VG ++ EGL+MIDA+QRLGI+Y FK+EIE +LQRQY+ + T G  + D
Sbjct: 99  QRLDEVRNVFSAVGEDTLEGLMMIDAIQRLGIDYHFKEEIEAVLQRQYMKAGTHGESIQD 158

Query: 151 LQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEE 210
           L EVALRFRLLRQEGY+VPAD+FNNF  KEG+F Q N+S+DI  L+ +Y ASQLSI GE+
Sbjct: 159 LYEVALRFRLLRQEGYHVPADVFNNFKNKEGKFKQ-NLSKDIKGLLGLYAASQLSIEGED 217

Query: 211 GLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWM 270
            L+EA +FS+ +LN  + HLDH++A  +G+TL HP+HKSLPRFMAK  F  +FQG   W 
Sbjct: 218 ILEEAQRFSSTLLNAGLEHLDHHEATVVGHTLEHPHHKSLPRFMAKS-FLKDFQGPNGW- 275

Query: 271 LHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPL 317
           L VL+E+AK DFNMV ++H +E++Q++KWW+DLGLA++L FARDQPL
Sbjct: 276 LTVLQELAKADFNMVQSIHQQELLQISKWWQDLGLAEELKFARDQPL 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496214|ref|XP_002263717.2| PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090623|emb|CBI41007.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755442|gb|ADR74212.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|374087946|gb|AEY82696.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755440|gb|ADR74211.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086971|emb|CBI33220.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496657|ref|XP_003635291.1| PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496180|ref|XP_003635170.1| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496613|ref|XP_003635281.1| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
UNIPROTKB|Q84NC9 584 1e20 "Tricyclene synthase 1e20 0.616 0.404 0.390 1.2e-42
UNIPROTKB|Q84ND0 581 Oc15 "Tricyclene synthase Oc15 0.616 0.406 0.390 1.2e-42
UNIPROTKB|Q84NC8 579 0e23 "Tricyclene synthase 0e23 0.762 0.504 0.355 1.1e-41
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.613 0.420 0.388 1.9e-37
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.608 0.419 0.368 1.6e-34
TAIR|locus:2195768 569 TPS14 "terpene synthase 14" [A 0.652 0.439 0.366 2.8e-32
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.587 0.405 0.350 1.9e-31
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.637 0.427 0.330 2.2e-31
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.629 0.425 0.341 7.8e-31
UNIPROTKB|B2KSJ6 560 B2KSJ6 "Alpha-farnesene syntha 0.566 0.387 0.373 9.5e-31
UNIPROTKB|Q84NC9 1e20 "Tricyclene synthase 1e20, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 95/243 (39%), Positives = 149/243 (61%)

Query:    84 DIQVEHSRKLKDLKHIFSLVGGNS-FEGLVMIDAVQRLGIEYLFKDEIEEILQRQYI-IS 141
             ++ +++  K+K+ +H+  L G N   E L+ +DA  RLG+ + F+ EIEEIL++ Y  + 
Sbjct:    75 ELPMDYEGKIKETRHLLHLKGENDPIESLIFVDATLRLGVNHHFQKEIEEILRKSYATMK 134

Query:   142 STCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEA 201
             S      H L EV+L FRL+RQ G YV AD+FNNF  + GRF +  +  D   L+E+YEA
Sbjct:   135 SPIICEYHTLHEVSLFFRLMRQHGRYVSADVFNNFKGESGRFKE-ELKRDTRGLVELYEA 193

Query:   202 SQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFG 261
             +QLS  GE  LDEA  FS ++L+  +  ++ N   ++GN LR+P+H S+ RF  ++ +  
Sbjct:   194 AQLSFEGERILDEAENFSRQILHGNLAGMEDNLRRSVGNKLRYPFHTSIARFTGRN-YDD 252

Query:   262 NFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTF 321
             +  G   W    L+E+A  D  +  +++ +E++QV+KWW +LGL KKL  AR++P    F
Sbjct:   253 DLGGMYEWG-KTLRELALMDLQVERSVYQEELLQVSKWWNELGLYKKLNLARNRPFE--F 309

Query:   322 GLW 324
               W
Sbjct:   310 YTW 312
GO:0008152 "metabolic process" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=ISS
GO:0010333 "terpene synthase activity" evidence=ISS
UNIPROTKB|Q84ND0 Oc15 "Tricyclene synthase Oc15, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
UNIPROTKB|Q84NC8 0e23 "Tricyclene synthase 0e23, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
TAIR|locus:2195768 TPS14 "terpene synthase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00005013001
SubName- Full=Chromosome undetermined scaffold_890, whole genome shotgun sequence; Flags- Fragment; (540 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-57
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-41
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-23
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-14
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-11
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 4e-05
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  195 bits (499), Expect = 1e-57
 Identities = 99/259 (38%), Positives = 141/259 (54%), Gaps = 25/259 (9%)

Query: 77  HPSFFEHDI----------QVEHSRKLKDLKH------IFSLVGGNSFEGLVMIDAVQRL 120
            PS +  D           + E   ++++LK         S    + FE L +ID +QRL
Sbjct: 7   PPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRL 66

Query: 121 GIEYLFKDEIEEILQRQYIISSTCGGHLH--DLQEVALRFRLLRQEGYYVPADMFNNFMI 178
           GI Y F+DEI+EIL   Y    T  G  +  DL   AL FRLLRQ GY V +D+F  F  
Sbjct: 67  GISYHFEDEIKEILDYIYR-YWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKD 125

Query: 179 KEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDH-NQALA 237
           ++G+F +  +++D+  ++ +YEAS LS  GE+ LDEA  F+ K L E +      +  L+
Sbjct: 126 EDGKFKES-LTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLS 184

Query: 238 --IGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQ 295
             I   L  P H SLPR  A+  ++  F  +       L E+AK DFN++ ALH +E+  
Sbjct: 185 GEIEYALEIPLHASLPRLEAR--WYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKI 242

Query: 296 VTKWWKDLGLAKKLPFARD 314
           +++WWKDL LA KLPFARD
Sbjct: 243 LSRWWKDLDLASKLPFARD 261

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936 270 Terpene_synth_C: Terpene synthase family, metal bi 99.43
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 98.84
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 87.8
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=5.6e-98  Score=778.03  Aligned_cols=304  Identities=33%  Similarity=0.512  Sum_probs=285.1

Q ss_pred             CCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhh--cCCccchhhHHHHHHHhCcccccHHHHHH
Q 040521           55 GCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLV--GGNSFEGLVMIDAVQRLGIEYLFKDEIEE  132 (383)
Q Consensus        55 r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~--~~d~~~~L~lID~LQRLGIsyhFe~EI~~  132 (383)
                      |++++|+|++|||+++.++.+++..  .+.+.+++++||++|++||...  ..|++++|+|||+||||||+|||++||++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~--~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~   78 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE--EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKE   78 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch--hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            7889999999999777777766543  1257788999999999999864  46999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCC-CCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHHHHhhccCccCchH
Q 040521          133 ILQRQYIISSTCG-GHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEG  211 (383)
Q Consensus       133 ~L~~iy~~~~~~~-~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsLYeAS~L~~~gE~I  211 (383)
                      +|++||+.|.... ....|||+|||+|||||||||+||||||++|+|++|+|++ ++.+||+|||||||||||+++||+|
T Consensus        79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~-~~~~d~~g~l~Ly~As~l~~~gE~i  157 (542)
T cd00684          79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKE-SLTQDVKGMLSLYEASHLSFPGEDI  157 (542)
T ss_pred             HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCc-hhhhhhHHHHHHHHHhhcCCCCcHH
Confidence            9999999875321 3357999999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc---cCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcccCHHHHHHHHhhhhhhhhhh
Q 040521          212 LDEAGQFSAKMLNECMTH---LDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERRWMLHVLKEIAKKDFNMVHAL  288 (383)
Q Consensus       212 LdeA~~Fs~~~Lk~~~~~---~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~~~~~~LLeLAKLDFN~~Qsl  288 (383)
                      ||||+.||++||++.+.+   ++++|+++|++||++|+|+++||+|||+ ||++|++++++| ++||||||+|||+||++
T Consensus       158 LdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~-yi~~Y~~~~~~n-~~lLelAkldfn~~Q~~  235 (542)
T cd00684         158 LDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARW-YIEFYEQEDDHN-ETLLELAKLDFNILQAL  235 (542)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHH-HHHHhCCCcccc-HHHHHHHHHHHHHHhHh
Confidence            999999999999999987   7889999999999999999999999999 999999999999 99999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeeccccccccccHHH
Q 040521          289 HHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMGRLMNLFSSQKL  368 (383)
Q Consensus       289 hQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~dd~~d~~~s~e~  368 (383)
                      ||+||++++|||+++||.++|||||||++|||  ||++|++|||++|.+|+  .|||.++++|++   ||+||..||.||
T Consensus       236 hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~y--f~~~a~~feP~~s~~Rl--~~aK~~~l~~~i---DD~fD~~gt~eE  308 (542)
T cd00684         236 HQEELKILSRWWKDLDLASKLPFARDRLVECY--FWAAGTYFEPQYSLARI--ALAKTIALITVI---DDTYDVYGTLEE  308 (542)
T ss_pred             HHHHHHHHhHHHHhcCCcccCCcccchhHHHH--HHHHhcccCccchHHHH--HHHHHHHHHhhh---HhhhccCCCHHH
Confidence            99999999999999999989999999999999  99999999999999999  899999999999   999999999998


Q ss_pred             Hh
Q 040521          369 LL  370 (383)
Q Consensus       369 ~~  370 (383)
                      |.
T Consensus       309 l~  310 (542)
T cd00684         309 LE  310 (542)
T ss_pred             HH
Confidence            74

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 7e-37
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-31
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 7e-31
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 9e-31
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-30
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-30
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 1e-30
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-30
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-30
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 1e-30
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 7e-25
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 8e-24
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 1e-23
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 7e-23
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-22
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 7e-22
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 7e-20
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 5e-19
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 12/240 (5%)
Query: 89  HSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHL 148
           H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      
Sbjct: 52  HQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE--- 108
Query: 149 HDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAG 208
           +DL   ++RFRLLR+ GY V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L + G
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHG 167
Query: 209 EEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVF--FGNFQGE 266
           E+ LDEA  F+   L+  +  LDH  +  + + L+    + LPR  A+     + + +  
Sbjct: 168 EDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESH 227
Query: 267 RRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLA 326
            + +L    E AK DFNM+  LH KE+ ++ +WWKDL   +KLP+ARD+ + G F  W++
Sbjct: 228 NKALL----EFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYF--WIS 281
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 5e-53
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 8e-52
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 3e-51
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-50
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 2e-50
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 5e-49
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 7e-39
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-38
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-37
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 2e-36
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  183 bits (466), Expect = 5e-53
 Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 5/245 (2%)

Query: 78  PSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQ 137
            S ++ +  +  +  + D   +      +S   L +ID ++RLGI   F+ EI EIL  +
Sbjct: 54  DSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSK 113

Query: 138 YIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLME 197
           Y  ++       DL   ALRFRLLRQ  + V  ++F+ F   +G   + ++ +D   L++
Sbjct: 114 YYTNNEIDER--DLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQ 171

Query: 198 VYEASQLSIAGEEGLDEAGQFSAKMLNECM-THLDHNQALAIGNTLRHPYHKSLPRFMAK 256
           +YEAS LS  GEE L  A  F+ K L + +    D N   +I   L  P H  +    A+
Sbjct: 172 LYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNAR 231

Query: 257 DVFFGNFQGERRWMLHVLKEIAKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQP 316
             F   ++         + E+AK DFNMV A   +E+ + ++WW   GL  +LPF RD+ 
Sbjct: 232 -SFIDAYKRRPDMN-PTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRI 289

Query: 317 LNGTF 321
           +   +
Sbjct: 290 VECYY 294
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.0
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 98.96
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 98.92
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 97.85
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.75
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=4e-104  Score=824.19  Aligned_cols=308  Identities=26%  Similarity=0.420  Sum_probs=284.5

Q ss_pred             CCccccccCCCCcccCCCCCCCCCCCCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHH
Q 040521           39 RPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQ  118 (383)
Q Consensus        39 ~~~~~~~~~~~~~~~~r~~any~PsiW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQ  118 (383)
                      ++||.+-+       .||+||||||+|||+||+++.+++.   .+.+.+++++||++||.||....+|++++|+|||+||
T Consensus         8 ~~~~~~~~-------~R~~~~~~ps~W~d~fl~~~~~~~~---~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lq   77 (550)
T 3m00_A            8 VANYEEEI-------VRPVADFSPSLWGDQFLSFSIKNQV---AEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIE   77 (550)
T ss_dssp             ---------------CCCCCCCCCCTTTTTTSCCCCCHHH---HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             cccccccc-------CCCCCCCCcccccccccccCCcchh---hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            56775544       7999999999999999997654332   3456788999999999999753469999999999999


Q ss_pred             HhCcccccHHHHHHHHHHHHhhhcCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCcccccccccccHHHHHHH
Q 040521          119 RLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEV  198 (383)
Q Consensus       119 RLGIsyhFe~EI~~~L~~iy~~~~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G~F~~~~l~~DvkgLLsL  198 (383)
                      ||||+|||++||+++|++||+.|..    ..|||+|||+|||||||||+||||||++|+|++|+|++ ++.+|++|||+|
T Consensus        78 rLGi~~hF~~EI~~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~-~l~~d~~glL~L  152 (550)
T 3m00_A           78 RLGISYHFEKEIDDILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNL  152 (550)
T ss_dssp             HTTCGGGCHHHHHHHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCG-GGGGCHHHHHHH
T ss_pred             HcCchhhhHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccc-cchhchHHHHHH
Confidence            9999999999999999999988642    37999999999999999999999999999999999999 899999999999


Q ss_pred             HHhhccCccCchHHHHHHHHHHHHHHHHHhccCchHHHHHHHhccCCCCCCcchhhchhhhHh-hccCCcccCHHHHHHH
Q 040521          199 YEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFG-NFQGERRWMLHVLKEI  277 (383)
Q Consensus       199 YeAS~L~~~gE~ILdeA~~Fs~~~Lk~~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~-~Y~~~~~~~~~~LLeL  277 (383)
                      ||||||++|||+|||||+.||++||++.+++++++|+++|+|||++|+|+++||+|||+ ||+ +|++++++| +.||||
T Consensus       153 YeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~-yI~~~Y~~~~~~n-~~lLel  230 (550)
T 3m00_A          153 YEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRF-FISSIYDKEQSKN-NVLLRF  230 (550)
T ss_dssp             HHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHH-HHHHTGGGCTTCC-HHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHH-HHHHHhccccccc-HHHHHH
Confidence            99999999999999999999999999998888889999999999999999999999999 999 999999999 999999


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCccccchhhHHHHHHHhccccCCCCccccccCCCccceeeEEEeeecc
Q 040521          278 AKKDFNMVHALHHKEIVQVTKWWKDLGLAKKLPFARDQPLNGTFGLWLASQIQACQSKEWSSQNPFPSSTLLTTYLMFMG  357 (383)
Q Consensus       278 AKLDFN~~QslhQ~EL~~isrWWkdl~l~~kL~FaRDR~vE~Y~~fwa~~~~fEPq~s~~Ri~l~~ak~~vl~Tvv~~~d  357 (383)
                      ||||||+||++||+||++|+||||++||+++|||||||+||||  ||++|++||||||.+|+  .|||.++|+||+   |
T Consensus       231 AkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~y--fw~~~~~feP~~s~~R~--~~aK~~~l~tvi---D  303 (550)
T 3m00_A          231 AKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY--FWTLGVYFEPQYSQARV--MLVKTISMISIV---D  303 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHH--HHHHHHCCSGGGHHHHH--HHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHH--HHHHHhhCCccchHHHH--HHHHHHHHHHHH---H
Confidence            9999999999999999999999999999889999999999999  99999999999999999  999999999999   9


Q ss_pred             ccccccccHHHHh
Q 040521          358 RLMNLFSSQKLLL  370 (383)
Q Consensus       358 d~~d~~~s~e~~~  370 (383)
                      |+||++||.|||.
T Consensus       304 D~yD~ygTleEl~  316 (550)
T 3m00_A          304 DTFDAYGTVKELE  316 (550)
T ss_dssp             HHHHTTCCHHHHH
T ss_pred             HHccccCCHHHHH
Confidence            9999999999984
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 8e-42
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-38
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 6e-15
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-14
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  143 bits (362), Expect = 8e-42
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 6/180 (3%)

Query: 78  PSFFEHDIQVEHSRKLK-DLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQR 136
                 +   +    LK   + +    G    + L +ID ++RLGI Y F+ EI+EIL +
Sbjct: 11  IDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQ 70

Query: 137 QYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLM 196
            Y  +S C    +DL   AL+FRLLRQ G+ +  ++F+ F  + G+F   +++ D+  L+
Sbjct: 71  IYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFK-ESLASDVLGLL 125

Query: 197 EVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYHKSLPRFMAK 256
            +YEAS +    ++ L++A  FS   L     HL       + + L    HK +PR   +
Sbjct: 126 NLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETR 185
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 96.15
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=8.2e-69  Score=496.87  Aligned_cols=199  Identities=26%  Similarity=0.362  Sum_probs=182.0

Q ss_pred             CCCCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhCcccccHHHHHHHHHHHHhhh--
Q 040521           64 ASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIIS--  141 (383)
Q Consensus        64 iW~d~fl~s~~~~~~~~~~~~~~~~~~~Lk~eVk~ml~~~~~d~~~~L~lID~LQRLGIsyhFe~EI~~~L~~iy~~~--  141 (383)
                      +|||+||+|+++++..   +.+.+++++||++||.|+... .|++++|+|||+||||||+|||++||+++|++||+..  
T Consensus         1 iW~~~fl~sl~~~~~~---e~~~~r~e~Lkeevr~ml~~~-~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~   76 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTE---ERHLDRKAELIVQVRILLKEK-MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKC   76 (207)
T ss_dssp             CCCHHHHHHCCCSTTS---HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHhCCCCccc---HHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchh
Confidence            7999999999888753   677889999999999999865 6899999999999999999999999999999999752  


Q ss_pred             -cCCCCCCCChhhHhHhhhhhhhcCceeccccccccccCCc-ccccccccccHHHHHHHHHhhccCccCchHHHHHHHHH
Q 040521          142 -STCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEG-RFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFS  219 (383)
Q Consensus       142 -~~~~~~~~DL~~tAL~FRLLRqhGY~VSsDvF~~Fkd~~G-~F~~~~l~~DvkgLLsLYeAS~L~~~gE~ILdeA~~Fs  219 (383)
                       .+......|||+|||+|||||||||+||||||++|+|++| +|+. ++.+||+|||||||||||+++||+|||||+.||
T Consensus        77 ~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~dvF~~F~d~~g~~fk~-~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft  155 (207)
T d1n1ba1          77 FHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKA-SLAQDTKGMLQLYEASFLLRKGEDTLELAREFA  155 (207)
T ss_dssp             HHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCG-GGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHcCCCCCHHHHHHhccCCCCchhh-hHHHhHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence             1223445799999999999999999999999999999999 9999 899999999999999999999999999999999


Q ss_pred             HHHHHHHHh----ccCchHHHHHHHhccCCCCCCcchhhchhhhHhhccCCcc
Q 040521          220 AKMLNECMT----HLDHNQALAIGNTLRHPYHKSLPRFMAKDVFFGNFQGERR  268 (383)
Q Consensus       220 ~~~Lk~~~~----~~~~~L~~~V~~aL~~P~h~~l~RleaR~~yI~~Y~~~~~  268 (383)
                      ++||++.+.    +++++|+++|+|||++|+||+|||||||| ||+.|+++++
T Consensus       156 ~~~L~~~l~~~~~~~~~~l~~~V~~AL~~P~~~~l~rleaR~-yI~~Ye~~~d  207 (207)
T d1n1ba1         156 TKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARW-FIDAYARRPD  207 (207)
T ss_dssp             HHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHH-HHHHHHHCTT
T ss_pred             HHHHHHHHHhcccccchhHHHHHHHHhCCCccCCCcHHHHHH-hHHHhCCCCC
Confidence            999999875    35789999999999999999999999999 9999998764
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure